RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3926
(512 letters)
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 61.6 bits (149), Expect = 8e-13
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
D Y +L ++ E++IR AY++ A+K HPD+N DK+A F + +A EVL D RA
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 313 AYD 315
AYD
Sbjct: 64 AYD 66
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 55.1 bits (132), Expect = 1e-10
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARA 312
D Y L L S+++I+ AYR++AL+ HPDKN + A E F +++A +VL D R
Sbjct: 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP-GAEEKFKEIAEAYDVLSDPRKRE 62
Query: 313 AYD 315
+D
Sbjct: 63 IFD 65
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 55.5 bits (133), Expect = 2e-10
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 243 SSIMADIKDL--DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIE------T 294
SS MA + L D Y +L + D++ Y+K L HPDK D A
Sbjct: 5 SSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQK 64
Query: 295 FHLLSKAIEVLLDKSARAAYD 315
F + +A ++L ++ + YD
Sbjct: 65 FIEIDQAWKILGNEETKKKYD 85
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 54.9 bits (132), Expect = 3e-10
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDD---KKAIETFHLLSKAIEVLLDKS 309
+ + + + + ++ YRK L HPDK + A F L+ A ++
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93
Query: 310 ARAAY 314
+ Y
Sbjct: 94 QKPLY 98
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 53.9 bits (129), Expect = 4e-10
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 252 LDLYGLLELTIDCS--EQDIRSAYRKKALKCHPDKNP-----DDKKAIETFHLLSKAIEV 304
+D + L L Q + ++ + HPDK + A++ +++A +
Sbjct: 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60
Query: 305 LLDKSARAAYD 315
L RA Y
Sbjct: 61 LRHPLMRAEYL 71
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 50.8 bits (121), Expect = 5e-09
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 242 LSSIMADIKDLDLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLS 299
+ +++ L LL+L ++ AY++++L HPDK L+
Sbjct: 1 MDRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHAL----MQELN 56
Query: 300 KAIEVLLDKSARAAYDS 316
+ +
Sbjct: 57 SLWGTFKTEVYNLRMNL 73
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 50.4 bits (120), Expect = 8e-09
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 253 DLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAI-ETFHLLSKAIEVLLDKSAR 311
++ ++E E + + R+ LK HPDKNP++ E F L I L ++
Sbjct: 17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76
Query: 312 AAYDSVIRRK 321
R+
Sbjct: 77 DQNADRASRR 86
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 42.5 bits (99), Expect = 9e-06
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 250 KDLDLYGLLELTIDC--SEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLD 307
+ L L LL L + +R AY KK + HPDK D++K ++ + + D
Sbjct: 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK----MKKMNTLYKKMED 61
Query: 308 KSARAAYDSVIRRKEEVKIRNSKLDATRKKFK----EDLERREK 347
A + +I D + + E+L E+
Sbjct: 62 GVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEE 105
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 35.5 bits (81), Expect = 0.011
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 321 KEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEGSI 380
E + ++ + ++E L++ ++ EN+R + K + + QE ++L KE
Sbjct: 224 HEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE--- 280
Query: 381 RLQEEIKLMTEELNAAKE 398
Q+E ++M E+ +
Sbjct: 281 GFQKESRIMKNEIQDLQT 298
Score = 34.3 bits (78), Expect = 0.028
Identities = 17/115 (14%), Positives = 41/115 (35%), Gaps = 1/115 (0%)
Query: 264 CSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEE 323
+ L + ++ E+ +K + + K+ + +E
Sbjct: 185 KESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 244
Query: 324 VKIRNSKLDATRKKFKEDLERREKEAENERYKGYK-VNKSEEEILQQEIDRLRKE 377
+K K++ R + ++ ER E+ + K + E I++ EI L+ +
Sbjct: 245 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 31.3 bits (70), Expect = 0.044
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 40 TRESLTKIFSKYG------KINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCP 91
+ L FS +G KI + +G A + F D++ A G L N P
Sbjct: 11 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 70
Query: 92 LTLNYLNPDVER 103
+T++Y +
Sbjct: 71 ITVSYAFKKDSK 82
Score = 31.3 bits (70), Expect = 0.044
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 428 TRESLTKIFSKYG------KINILVISPKKRGSALLEFEHADSARRAKLYELG--LPNCP 479
+ L FS +G KI + +G A + F D++ A G L N P
Sbjct: 11 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 70
Query: 480 LTLNYLNPDVER 491
+T++Y +
Sbjct: 71 ITVSYAFKKDSK 82
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 31.4 bits (71), Expect = 0.064
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 35 DTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRA 80
+T V + + IFSKYGKI + +G A +++ + +AR A
Sbjct: 24 NTLVVKKSDVEAIFSKYGKIVGCSV---HKGFAFVQYVNERNARAA 66
Score = 31.4 bits (71), Expect = 0.064
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 423 DTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRA 468
+T V + + IFSKYGKI + +G A +++ + +AR A
Sbjct: 24 NTLVVKKSDVEAIFSKYGKIVGCSV---HKGFAFVQYVNERNARAA 66
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 32.6 bits (74), Expect = 0.12
Identities = 22/156 (14%), Positives = 53/156 (33%), Gaps = 27/156 (17%)
Query: 289 KKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVKIRNSKLDATRKKFKEDLERREKE 348
A+ ++ + + A +++ ++ + L ++ +D R E
Sbjct: 355 AVALA--NIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAML----ERAGDDAARPEWL 408
Query: 349 AENERYKGYKVNKSEEE---ILQQEIDRLRKEGSIRLQEEIKLMTEELNAAKELSELNAK 405
+ +E++ IL + +L +L +E K EL +++EL
Sbjct: 409 EPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK----EL--LDQIAELLRI 462
Query: 406 LNPENYRLRIRWKSSSTDTDVYTRESLTKIFSKYGK 441
L + + + RE L + ++G
Sbjct: 463 LGSADRLMEV------------IREELELVREQFGD 486
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 29.5 bits (66), Expect = 0.19
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 40 TRESLTKIFSKYGKINILVI-----SPKKRGSALLEFEHADSARRA--KLYELGLPNCPL 92
T L + FS G I + + + + G A + F+ A RA + + P+
Sbjct: 13 TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 72
Query: 93 TLNYLNPD 100
+ + D
Sbjct: 73 RIMWSQRD 80
Score = 29.5 bits (66), Expect = 0.19
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 428 TRESLTKIFSKYGKINILVI-----SPKKRGSALLEFEHADSARRA--KLYELGLPNCPL 480
T L + FS G I + + + + G A + F+ A RA + + P+
Sbjct: 13 TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 72
Query: 481 TLNYLNPD 488
+ + D
Sbjct: 73 RIMWSQRD 80
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 29.5 bits (66), Expect = 0.22
Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 40 TRESLTKIFSKYGKINILVI------SPKKRGSALLEFEHADSARRAK---LYELGLPNC 90
+ + ++FS +G++ + + + RG ++F A++A + L
Sbjct: 21 NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 80
Query: 91 PLTLNYLNPDVERE 104
L L + + +V +
Sbjct: 81 RLVLEWADSEVTVQ 94
Score = 29.5 bits (66), Expect = 0.22
Identities = 12/74 (16%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 428 TRESLTKIFSKYGKINILVI------SPKKRGSALLEFEHADSARRAK---LYELGLPNC 478
+ + ++FS +G++ + + + RG ++F A++A + L
Sbjct: 21 NQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 80
Query: 479 PLTLNYLNPDVERE 492
L L + + +V +
Sbjct: 81 RLVLEWADSEVTVQ 94
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 29.5 bits (66), Expect = 0.23
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 40 TRESLTKIFSKYGKI-----NILVISPKKRGSALLEFEHADSARRA 80
T + L IF KYG I ++ + RG A + + + A+ A
Sbjct: 19 TDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
Score = 29.5 bits (66), Expect = 0.23
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 428 TRESLTKIFSKYGKI-----NILVISPKKRGSALLEFEHADSARRA 468
T + L IF KYG I ++ + RG A + + + A+ A
Sbjct: 19 TDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia
coli [TaxId: 562]}
Length = 143
Score = 29.9 bits (67), Expect = 0.36
Identities = 13/95 (13%), Positives = 34/95 (35%), Gaps = 14/95 (14%)
Query: 315 DSVIRRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEI-------- 366
S+ ++ + ++ L+ K +L+R E + + + K + K+ +
Sbjct: 12 GSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAK-MKKLQSMKAGSDRTKLEKDVM 70
Query: 367 -----LQQEIDRLRKEGSIRLQEEIKLMTEELNAA 396
Q+ ++ + R EE + + A
Sbjct: 71 AQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTA 105
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 28.9 bits (64), Expect = 0.38
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 40 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRA--KLYELGLPNCPLTLNYL 97
T + L ++F +I ++ K +G A +EF+ A + + + ++L Y
Sbjct: 29 TEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88
Query: 98 NP 99
Sbjct: 89 GE 90
Score = 28.9 bits (64), Expect = 0.38
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 428 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRA--KLYELGLPNCPLTLNYL 485
T + L ++F +I ++ K +G A +EF+ A + + + ++L Y
Sbjct: 29 TEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88
Query: 486 NP 487
Sbjct: 89 GE 90
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 30.2 bits (67), Expect = 0.65
Identities = 16/81 (19%), Positives = 29/81 (35%)
Query: 321 KEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEGSI 380
+ +ED E ++ EN ++ + E +L I L KE
Sbjct: 653 PNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQ 712
Query: 381 RLQEEIKLMTEELNAAKELSE 401
+L ++ + EL +LS
Sbjct: 713 KLLKQKQEKETELENLLKLSA 733
Score = 27.1 bits (59), Expect = 5.9
Identities = 19/155 (12%), Positives = 44/155 (28%), Gaps = 25/155 (16%)
Query: 241 PLSSIMADIKDLDLYGLLELTIDCSEQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSK 300
P ++I+ ++++L + + + +D+++
Sbjct: 626 PRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVI 685
Query: 301 AIEVLLDKSARAAYDSVIRR--KEEV-KIRNSKLDATRKKFKEDLERREKEAENERYKGY 357
L + I KE K+ +++EKE E E
Sbjct: 686 NGPEELYGTYEYLLGMRIWSLTKERYQKLLK--------------QKQEKETELENLL-- 729
Query: 358 KVNKSEEEILQQEIDRLRKEGSIRLQEEIKLMTEE 392
S ++I ++ QE ++ E
Sbjct: 730 --KLSAKDIWNTDLKAFEVG----YQEFLQRDAEA 758
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 28.1 bits (62), Expect = 0.65
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 40 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNP 99
T + L + FS+YG + + I R A + F A+ +L + + ++ P
Sbjct: 18 TEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77
Query: 100 DVEREESRKQP 110
+ S P
Sbjct: 78 ---KHNSNSGP 85
Score = 28.1 bits (62), Expect = 0.65
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 428 TRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNCPLTLNYLNP 487
T + L + FS+YG + + I R A + F A+ +L + + ++ P
Sbjct: 18 TEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77
Query: 488 DVEREESRKQP 498
+ S P
Sbjct: 78 ---KHNSNSGP 85
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 29.6 bits (66), Expect = 0.82
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 5/77 (6%)
Query: 319 RRKEEVKIRNSKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEG 378
E R +++ + ++ + E + +G + I +LR++
Sbjct: 208 TLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQG-----LAPQDRDARIAQLRQQT 262
Query: 379 SIRLQEEIKLMTEELNA 395
E I+ + + A
Sbjct: 263 FTAPGEAIRAASLDRGA 279
Score = 28.1 bits (62), Expect = 2.7
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 1/109 (0%)
Query: 266 EQDIRSAYRKKALKCHPDKNPDDKKAIETFHLLSKAIEVLLDKSARAAYDSVIRRKEEVK 325
+ A + K D +KA T + I L A A + + E +
Sbjct: 169 PDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQ 228
Query: 326 IRNSKLDATRKKF-KEDLERREKEAENERYKGYKVNKSEEEILQQEIDR 373
R A R + + L ++++A + + E I +DR
Sbjct: 229 TRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRAASLDR 277
>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 27.1 bits (60), Expect = 1.2
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 41 RESLTKIFSKYGKINILVISPKKRGS 66
++ L + F+++GK+ + +SP
Sbjct: 10 QQLLQEAFARHGKVKSVELSPHTDYQ 35
Score = 27.1 bits (60), Expect = 1.2
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 429 RESLTKIFSKYGKINILVISPKKRGS 454
++ L + F+++GK+ + +SP
Sbjct: 10 QQLLQEAFARHGKVKSVELSPHTDYQ 35
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 27.3 bits (60), Expect = 1.2
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 40 TRESLTKIFSKYGKINILVI--------SPKKRGSALLEFEHADSARRA 80
T E+L +FSK G I I G +E++ + A++A
Sbjct: 11 TEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 59
Score = 27.3 bits (60), Expect = 1.2
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 428 TRESLTKIFSKYGKINILVI--------SPKKRGSALLEFEHADSARRA 468
T E+L +FSK G I I G +E++ + A++A
Sbjct: 11 TEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKA 59
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 28.8 bits (63), Expect = 1.6
Identities = 7/38 (18%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 358 KVNKSEEEI--LQQEIDRLRKEGSIRL-QEEIKLMTEE 392
N S +E+ L++ + +++ + EE++ + +E
Sbjct: 327 SKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 26.5 bits (58), Expect = 1.8
Identities = 4/46 (8%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 40 TRESLTKIFSKYGKINILVISPKKRGS-----ALLEFEHADSARRA 80
E + + F +G++ + + + + + F+ + ++
Sbjct: 12 PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 57
Score = 26.5 bits (58), Expect = 1.8
Identities = 4/46 (8%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 428 TRESLTKIFSKYGKINILVISPKKRGS-----ALLEFEHADSARRA 468
E + + F +G++ + + + + + F+ + ++
Sbjct: 12 PEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 57
>d1dqua_ c.1.12.7 (A:) Isocitrate lyase {Aspergillus nidulans
[TaxId: 162425]}
Length = 519
Score = 28.4 bits (63), Expect = 2.1
Identities = 8/65 (12%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 329 SKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDRLRKEGSIRLQEEIKL 388
S ++ +++ +++ + ++ R++ K + E+I+ R G+++++ +
Sbjct: 1 SYIEEEDQRYWDEVAAVKNWWKDSRWRYTKRPFTAEQIV-----AKR--GNLKIEYPSNV 53
Query: 389 MTEEL 393
++L
Sbjct: 54 QAKKL 58
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus
thermophilus, strain hb27 [TaxId: 274]}
Length = 110
Score = 26.8 bits (59), Expect = 2.5
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 315 DSVIRRKEEVKIRN-SKLDATRKKFKEDLERREKEAENERYKGYKVNKSEEEILQQEIDR 373
++ + + + LD ++ K+ L+ + E + K E+E L
Sbjct: 16 RAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKA 75
Query: 374 LRKEGSIRLQEEIKLMTEELNA 395
L +E + RL+E ++ L A
Sbjct: 76 LGEE-AKRLEEALREKEARLEA 96
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 2 [TaxId: 11709]}
Length = 427
Score = 28.0 bits (62), Expect = 3.0
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 355 KGYKVNKSEEEILQQEIDRLRKEGSIR 381
+ + + K + E L++ +++ KEG +
Sbjct: 20 RQWPLTKEKIEALKEICEKMEKEGQLE 46
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 26.1 bits (57), Expect = 3.3
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 34 TDTDVY--------TRESLTKIFSKYGKI-NILVISPKKRG----SALLEFEHADSARRA 80
++T++ T L +F G I ++ K G A ++F ++RA
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
Query: 81 --KLYELGLPNCPLTLNYLNP 99
L + + N L ++Y P
Sbjct: 61 IKVLNGITVRNKRLKVSYARP 81
Score = 26.1 bits (57), Expect = 3.3
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 422 TDTDVY--------TRESLTKIFSKYGKI-NILVISPKKRG----SALLEFEHADSARRA 468
++T++ T L +F G I ++ K G A ++F ++RA
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
Query: 469 --KLYELGLPNCPLTLNYLNP 487
L + + N L ++Y P
Sbjct: 61 IKVLNGITVRNKRLKVSYARP 81
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 26.4 bits (58), Expect = 3.4
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 41 RESLTKIFSKYGKI-NILVISPKKRGSALLEFEHADSARRA 80
RE L SK+G+I +L+ G A + F + A
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYC 73
Score = 26.4 bits (58), Expect = 3.4
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 429 RESLTKIFSKYGKI-NILVISPKKRGSALLEFEHADSARRA 468
RE L SK+G+I +L+ G A + F + A
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYC 73
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 25.0 bits (54), Expect = 7.3
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 35 DTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNC---- 90
R L ++ +G I + K A +E + A+ A Y P
Sbjct: 17 QRGKNLRYQLLQLVEPFGVI-SNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGK 75
Query: 91 PLTLNYLNPDVER 103
P+ ++
Sbjct: 76 PVRVHLSQKYKRI 88
Score = 25.0 bits (54), Expect = 7.3
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 423 DTDVYTRESLTKIFSKYGKINILVISPKKRGSALLEFEHADSARRAKLYELGLPNC---- 478
R L ++ +G I + K A +E + A+ A Y P
Sbjct: 17 QRGKNLRYQLLQLVEPFGVI-SNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGK 75
Query: 479 PLTLNYLNPDVER 491
P+ ++
Sbjct: 76 PVRVHLSQKYKRI 88
>d1xqba_ e.56.1.1 (A:) Hypothetical protein HI0510 {Haemophilus
influenzae [TaxId: 727]}
Length = 231
Score = 26.1 bits (57), Expect = 9.4
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 257 LLELTIDCSEQDIRSAYRKK 276
L EQD R AY++
Sbjct: 183 LSRFIRQVLEQDPRPAYQQG 202
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 24.6 bits (53), Expect = 9.5
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 17/83 (20%)
Query: 31 SSSTDTDVY--------TRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSA 77
+S D ++Y T++ L ++FS+YG+I I + RG + F+ A
Sbjct: 2 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 61
Query: 78 RRAKL----YELGLPNCPLTLNY 96
A + P+T+ +
Sbjct: 62 EEAIKGLNGQKPSGATEPITVKF 84
Score = 24.6 bits (53), Expect = 9.5
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 17/83 (20%)
Query: 419 SSSTDTDVY--------TRESLTKIFSKYGKINILVISPKK-----RGSALLEFEHADSA 465
+S D ++Y T++ L ++FS+YG+I I + RG + F+ A
Sbjct: 2 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 61
Query: 466 RRAKL----YELGLPNCPLTLNY 484
A + P+T+ +
Sbjct: 62 EEAIKGLNGQKPSGATEPITVKF 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.129 0.356
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,805,578
Number of extensions: 85712
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 69
Length of query: 512
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 423
Effective length of database: 1,185,626
Effective search space: 501519798
Effective search space used: 501519798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.3 bits)