BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3927
         (262 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In
           Its Auto-Inhibited State
          Length = 999

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 93/200 (46%), Gaps = 24/200 (12%)

Query: 22  IAQQLTHIELERLSFIGPEEFV-QAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLV 80
           +A Q+T  + E  + +   E +   F + N      FK  K T NL+ +++ FN + + V
Sbjct: 764 LAYQMTTYDWELFNCVHELELIYHTFGRHN------FK--KTTANLDLFLRRFNEIQFWV 815

Query: 81  ATEXXXXXXXXXXXXXXEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQS 140
            TE              + +I+ A  C    N NS  AI+ GL+   +SRL  TW K+ S
Sbjct: 816 VTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPS 875

Query: 141 --GKF-SILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNE 197
              KF +  E  MDPS N  +YR  L AA              +IPF  LL+KD+ F +E
Sbjct: 876 KFKKFYAEFESLMDPSRNHRAYR--LTAAKLEPP---------LIPFMPLLIKDMTFTHE 924

Query: 198 GCTNKLPNGHINFEKFWQLA 217
           G    + N  +NFEK   +A
Sbjct: 925 GNKTFIDN-LVNFEKMRMIA 943


>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly
           Activated By Camp
          Length = 999

 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 93/200 (46%), Gaps = 24/200 (12%)

Query: 22  IAQQLTHIELERLSFIGPEEFV-QAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLV 80
           +A Q+T  + E  + +   E +   F + N      FK  K T NL+ +++ FN + + V
Sbjct: 764 LAYQMTTYDWELFNCVHELELIYHTFGRHN------FK--KTTANLDLFLRRFNEIQFWV 815

Query: 81  ATEXXXXXXXXXXXXXXEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQS 140
            TE              + +I+ A  C    N NS  AI+ GL+   +SRL  TW K+ S
Sbjct: 816 VTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPS 875

Query: 141 --GKF-SILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNE 197
              KF +  E  MDPS N  +YR  L AA              +IPF  LL+KD+ F +E
Sbjct: 876 KFKKFYAEFESLMDPSRNHRAYR--LTAAKLEPP---------LIPFMPLLIKDMTFTHE 924

Query: 198 GCTNKLPNGHINFEKFWQLA 217
           G    + N  +NFEK   +A
Sbjct: 925 GNKTFIDN-LVNFEKMRMIA 943


>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
          Length = 694

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 77/160 (48%), Gaps = 15/160 (9%)

Query: 61  KRTRNLENYVQWFNRLSYLVATEXXXXXXXXXXXXXXEFWIEAARECFNIGNFNSLMAII 120
           K T NL+ +++ FN + + V TE              + +I+ A  C    N NS  AI+
Sbjct: 491 KTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIV 550

Query: 121 AGLNMSPISRLKKTWNKIQS--GKF-SILEHQMDPSSNFSSYRSTLKAAMWRSAGATDER 177
            GL+   +SRL  TW K+ S   KF +  E  MDPS N  +YR  L AA           
Sbjct: 551 MGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYR--LTAAKLEPP------ 602

Query: 178 QRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLA 217
              +IPF  LL+KD+ F +EG    + N  +NFEK   +A
Sbjct: 603 ---LIPFMPLLIKDMTFTHEGNKTFIDN-LVNFEKMRMIA 638


>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1
          Length = 240

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 23/226 (10%)

Query: 22  IAQQLTHIELERLSFIGPEEFV-QAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLV 80
           IA+QLT ++      I  EEF  Q + K   +  T +  MK T++       FN +S  +
Sbjct: 9   IAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKYERTPYI-MKTTKH-------FNHVSNFI 60

Query: 81  ATEXXXXXXXXXXXXXXEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQS 140
           A+E              E W+  A  C  + N+N+++ I + +N S I RLKKTW K+  
Sbjct: 61  ASEIIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSK 120

Query: 141 GKFSILE---HQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNE 197
              S+L+     +     F + R +L+                 +P+  + + DL F+ E
Sbjct: 121 QTKSLLDKLQKLVSSDGRFKNLRESLRNC-----------DPPCVPYLGMYLTDLVFIEE 169

Query: 198 GCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFL 243
           G  N   +G +NF K   ++  + E   ++Q T       K I +L
Sbjct: 170 GTPNYTEDGLVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYL 215


>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific
           Guanine- Nucleotide Exchange Factor Ralgps1a
 pdb|3QXL|B Chain B, Crystal Structure Of The Cdc25 Domain From Ral-Specific
           Guanine- Nucleotide Exchange Factor Ralgps1a
          Length = 271

 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 79/185 (42%), Gaps = 22/185 (11%)

Query: 18  TPNHIAQQLTHIELERLSFIGPEEFVQ-AFAKENPHLETSFKDMKRTRNLENYVQWFNRL 76
           TP   A Q+T +++     I PEE     ++K+  H            N+  + + FN++
Sbjct: 32  TPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKH--------SLAPNVVAFTRRFNQV 83

Query: 77  SYLVATEXXXXXXXXXXXXXXEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTW- 135
           S+ V  E                +++ A++   + N +SLM++++ L  +PI RL KTW 
Sbjct: 84  SFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWA 143

Query: 136 --NKIQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLY 193
             N+     F  L++ M    N+   R  +++     +          IP+  + + DL 
Sbjct: 144 LLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPS----------IPYLGIYLLDLI 193

Query: 194 FLNEG 198
           +++  
Sbjct: 194 YIDSA 198


>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
           Sevenless (Sos)
 pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
           Sevenless (Sos)
          Length = 852

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 22/213 (10%)

Query: 19  PNHIAQQLTHIELERLSFIGPEEFVQAF-AKENPHLETSFKDMKRTRNLENYVQWFNRLS 77
           P  IA+QLT +E +    + P E V +   KE+  +  S   +K  R+  N   WF +  
Sbjct: 584 PIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEI-NSPNLLKMIRHTTNLTLWFEKC- 641

Query: 78  YLVATEXXXXXXXXXXXXXXEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNK 137
            +V TE                 IE  +    + NFN ++ +++ +N SP+ RL  T+ +
Sbjct: 642 -IVETENLEERVAVVSRI-----IEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQ 695

Query: 138 IQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNE 197
           I S +  ILE   + S +   Y+  L  A  RS           +PFF + + ++    E
Sbjct: 696 IPSRQKKILEEAHELSED--HYKKYL--AKLRSINPP------CVPFFGIYLTNILKTEE 745

Query: 198 GCTNKLPNGH---INFEKFWQLAKQVTEFITWK 227
           G    L       INF K  ++A+   E   ++
Sbjct: 746 GNPEVLKRHGKELINFSKRRKVAEITGEIQQYQ 778


>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
           Catalytic Unit Of The Ras Activator Son Of Sevenless
           (Sos)
          Length = 1049

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 22/213 (10%)

Query: 19  PNHIAQQLTHIELERLSFIGPEEFVQAF-AKENPHLETSFKDMKRTRNLENYVQWFNRLS 77
           P  IA+QLT +E +    + P E V +   KE+  +  S   +K  R+  N   WF +  
Sbjct: 781 PIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEI-NSPNLLKMIRHTTNLTLWFEKC- 838

Query: 78  YLVATEXXXXXXXXXXXXXXEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNK 137
            +V TE                 IE  +    + NFN ++ +++ +N SP+ RL  T+ +
Sbjct: 839 -IVETENLEERVAVVSRI-----IEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQ 892

Query: 138 IQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNE 197
           I S +  ILE   + S +   Y+  L  A  RS           +PFF + + ++    E
Sbjct: 893 IPSRQKKILEEAHELSED--HYKKYL--AKLRSINPP------CVPFFGIYLTNILKTEE 942

Query: 198 GCTNKLPNGH---INFEKFWQLAKQVTEFITWK 227
           G    L       INF K  ++A+   E   ++
Sbjct: 943 GNPEVLKRHGKELINFSKRRKVAEITGEIQQYQ 975


>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
           Sevenless Protein At 4.1 Ang.
 pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
           Sevenless Protein At 4.1 Ang
          Length = 847

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 22/213 (10%)

Query: 19  PNHIAQQLTHIELERLSFIGPEEFVQAF-AKENPHLETSFKDMKRTRNLENYVQWFNRLS 77
           P  IA+QLT +E +    + P E V +   KE+  +  S   +K  R+  N   WF +  
Sbjct: 584 PIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEI-NSPNLLKMIRHTTNLTLWFEKC- 641

Query: 78  YLVATEXXXXXXXXXXXXXXEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNK 137
            +V TE                 IE  +    + NFN ++ +++ +N SP+ RL  T+ +
Sbjct: 642 -IVETENLEERVAVVSRI-----IEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQ 695

Query: 138 IQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNE 197
           I S +  ILE   + S +   Y+  L  A  RS           +PFF + + ++    E
Sbjct: 696 IPSRQKKILEEAHELSED--HYKKYL--AKLRSINPP------CVPFFGIYLTNILKTEE 745

Query: 198 GCTNKLPNGH---INFEKFWQLAKQVTEFITWK 227
           G    L       INF K  ++A+   E   ++
Sbjct: 746 GNPEVLKRHGKELINFSKRRKVAEITGEIQQYQ 778


>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless
           (Rem-Cdc25) In The Absence Of Ras
          Length = 490

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 22/213 (10%)

Query: 19  PNHIAQQLTHIELERLSFIGPEEFVQA-FAKENPHLETSFKDMKRTRNLENYVQWFNRLS 77
           P  IA+QLT +E +    + P E V + + KE+  +  S   +K  R+  N   WF +  
Sbjct: 222 PIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEI-NSPNLLKMIRHTTNLTLWFEKC- 279

Query: 78  YLVATEXXXXXXXXXXXXXXEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNK 137
            +V TE                 IE  +    + NFN ++ +++ +N SP+ RL  T+ +
Sbjct: 280 -IVETENLEERVAVVSRI-----IEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQ 333

Query: 138 IQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNE 197
           I S +  ILE   + S +   Y+  L  A  RS           +PFF + + ++    E
Sbjct: 334 IPSRQKKILEEAHELSED--HYKKYL--AKLRSINPP------CVPFFGIYLTNILKTEE 383

Query: 198 GCTNKLPNGH---INFEKFWQLAKQVTEFITWK 227
           G    L       INF K  ++A+   E   ++
Sbjct: 384 GNPEVLKRHGKELINFSKRRKVAEITGEIQQYQ 416


>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-Specific Nucleotide Exchange Factor Sos
 pdb|1NVV|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-specific Nucleotide Exchange Factor Sos
 pdb|1NVW|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-specific Nucleotide Exchange Factor Sos
 pdb|1NVX|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
           The Ras-Specific Nucleotide Exchange Factor Sos
          Length = 481

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 22/213 (10%)

Query: 19  PNHIAQQLTHIELERLSFIGPEEFVQA-FAKENPHLETSFKDMKRTRNLENYVQWFNRLS 77
           P  IA+QLT +E +    + P E V + + KE+  +  S   +K  R+  N   WF +  
Sbjct: 216 PIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEI-NSPNLLKMIRHTTNLTLWFEKC- 273

Query: 78  YLVATEXXXXXXXXXXXXXXEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNK 137
            +V TE                 IE  +    + NFN ++ +++ +N SP+ RL  T+ +
Sbjct: 274 -IVETENLEERVAVVSRI-----IEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQ 327

Query: 138 IQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNE 197
           I S +  ILE   + S +   Y+  L  A  RS           +PFF + + ++    E
Sbjct: 328 IPSRQKKILEEAHELSED--HYKKYL--AKLRSINPP------CVPFFGIYLTNILKTEE 377

Query: 198 GCTNKLPNGH---INFEKFWQLAKQVTEFITWK 227
           G    L       INF K  ++A+   E   ++
Sbjct: 378 GNPEVLKRHGKELINFSKRRKVAEITGEIQQYQ 410


>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
          Length = 484

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 22/213 (10%)

Query: 19  PNHIAQQLTHIELERLSFIGPEEFVQA-FAKENPHLETSFKDMKRTRNLENYVQWFNRLS 77
           P  IA+QLT +E +    + P E V + + KE+  +  S   +K  R+  N   WF +  
Sbjct: 216 PIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEI-NSPNLLKMIRHTTNLTLWFEKC- 273

Query: 78  YLVATEXXXXXXXXXXXXXXEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNK 137
            +V TE                 IE  +    + NFN ++ +++ +N SP+ RL  T+ +
Sbjct: 274 -IVETENLEERVAVVSRI-----IEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQ 327

Query: 138 IQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNE 197
           I S +  ILE   + S +   Y+  L  A  RS           +PFF + + ++    E
Sbjct: 328 IPSRQKKILEEAHELSED--HYKKYL--AKLRSINPP------CVPFFGIYLTNILKTEE 377

Query: 198 GCTNKLPNGH---INFEKFWQLAKQVTEFITWK 227
           G    L       INF K  ++A+   E   ++
Sbjct: 378 GNPEVLKRHGKELINFSKRRKVAEITGEIQQYQ 410


>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
          Length = 477

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 22/213 (10%)

Query: 19  PNHIAQQLTHIELERLSFIGPEEFV-QAFAKENPHLETSFKDMKRTRNLENYVQWFNRLS 77
           P  IA+QLT +E +    + P E V   + KE+  +  S   +K  R+  N   WF +  
Sbjct: 214 PIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEI-NSPNLLKMIRHTTNLTLWFEKC- 271

Query: 78  YLVATEXXXXXXXXXXXXXXEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNK 137
            +V TE                 IE  +    + NFN ++ +++ +N SP+ RL  T+ +
Sbjct: 272 -IVETENLEERVAVVSRI-----IEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQ 325

Query: 138 IQSGKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNE 197
           I S +  ILE   + S +   Y+  L  A  RS           +PFF + + ++    E
Sbjct: 326 IPSRQKKILEEAHELSED--HYKKYL--AKLRSINPP------CVPFFGIYLTNILKTEE 375

Query: 198 GCTNKLPNGH---INFEKFWQLAKQVTEFITWK 227
           G    L       INF K  ++A+   E   ++
Sbjct: 376 GNPEVLKRHGKELINFSKRRKVAEITGEIQQYQ 408


>pdb|3T6G|A Chain A, Structure Of The Complex Between Nsp3 (Shep1) And P130cas
 pdb|3T6G|C Chain C, Structure Of The Complex Between Nsp3 (Shep1) And P130cas
          Length = 331

 Score = 32.0 bits (71), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 103 AARECFNIGNFNSLMAIIAGLNMSPISRLKKTW 135
           AA     +GN  S  A++  L+M+ ISRL++TW
Sbjct: 135 AAELRGTMGNMFSFAAVMGALDMAQISRLEQTW 167


>pdb|1JDI|A Chain A, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
 pdb|1JDI|B Chain B, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
 pdb|1JDI|C Chain C, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
 pdb|1JDI|D Chain D, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
 pdb|1JDI|E Chain E, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
 pdb|1JDI|F Chain F, Crystal Structure Of L-Ribulose-5-Phosphate 4-Epimerase
          Length = 231

 Score = 28.5 bits (62), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 146 LEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLPN 205
           L +Q  PS     +  +  A +W  AG +       IP       D ++    CT K+ +
Sbjct: 82  LLYQAFPSIGGIVHTHSRHATIWAQAGQS-------IPATGTTHADYFYGTIPCTRKMTD 134

Query: 206 GHINFEKFWQLAKQVTE 222
             IN E  W+    + E
Sbjct: 135 AEINGEYEWETGNVIVE 151


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,276,739
Number of Sequences: 62578
Number of extensions: 258698
Number of successful extensions: 491
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 454
Number of HSP's gapped (non-prelim): 22
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)