Query psy3927
Match_columns 262
No_of_seqs 126 out of 1147
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 20:56:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ije_S Guanine nucleotide-rele 100.0 5E-62 1.7E-66 418.2 18.3 228 17-262 4-235 (240)
2 3qxl_A RAS-specific guanine nu 100.0 8.2E-59 2.8E-63 404.1 18.8 235 8-262 24-269 (271)
3 4f7z_A RAP guanine nucleotide 100.0 6.8E-54 2.3E-58 432.5 20.6 231 11-262 755-995 (999)
4 2ii0_A SOS-1, SON of sevenless 100.0 2E-54 6.9E-59 405.6 15.4 231 10-262 215-458 (490)
5 3cf6_E RAP guanine nucleotide 100.0 2.9E-53 1E-57 412.2 20.2 230 12-262 451-690 (694)
6 3ksy_A SOS-1, SON of sevenless 100.0 6.7E-51 2.3E-55 410.8 12.5 232 9-262 773-1017(1049)
7 3t6g_A SH2 domain-containing p 99.7 1.4E-17 4.9E-22 144.3 12.3 122 16-141 47-173 (331)
8 3t6a_A Breast cancer anti-estr 99.7 3.3E-17 1.1E-21 142.1 13.2 122 16-141 46-172 (333)
9 1bax_A M-PMV MA, M-PMV matrix 48.2 27 0.00091 24.5 4.4 35 193-227 36-70 (94)
10 2ket_A Cathelicidin-6; antimic 43.6 13 0.00043 19.0 1.5 24 155-186 2-25 (27)
11 2voi_B BH3-interacting domain 37.5 35 0.0012 19.1 2.9 20 20-39 9-28 (34)
12 2kbw_B BH3-interacting domain 36.3 39 0.0013 19.1 3.0 20 20-39 13-32 (35)
13 1pq1_B BCL2-like protein 11; B 34.9 11 0.00039 20.5 0.6 16 101-116 6-22 (33)
14 2wh6_B BCL-2-like protein 11; 32.7 6.1 0.00021 20.4 -0.7 15 101-115 6-21 (26)
15 3kj0_B BCL-2-like protein 11; 31.5 14 0.00049 19.1 0.6 16 101-116 8-24 (27)
16 1hgv_A PH75 inovirus major coa 28.3 29 0.00098 20.1 1.6 13 16-28 2-14 (46)
17 2rpa_A Katanin P60 ATPase-cont 25.5 1.5E+02 0.0052 19.7 5.5 29 96-124 11-39 (78)
18 2apo_B Ribosome biogenesis pro 22.2 55 0.0019 20.8 2.2 17 150-166 36-52 (60)
19 2aus_D NOP10, ribosome biogene 20.8 61 0.0021 20.6 2.2 17 150-166 35-51 (60)
No 1
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}
Probab=100.00 E-value=5e-62 Score=418.17 Aligned_cols=228 Identities=25% Similarity=0.413 Sum_probs=216.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHHhHHhhcCCCCcccccccccCccHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Q psy3927 17 PTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHVKKKQRVKV 96 (262)
Q Consensus 17 ~~~~~iA~QLTl~d~~lf~~I~~~e~l~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~~~~~~Ra~~ 96 (262)
++|.+||+|||++|+++|++|+|.||++..|.+... ...+|++.+++++||.++.||+++||.+++.++||++
T Consensus 4 ~~p~eiA~QLTl~d~~lf~~I~~~E~l~~~w~~~~~-------~~~~p~i~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~ 76 (240)
T 2ije_S 4 GSALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEK-------YERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASA 76 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGGGGGGGGSTTH-------HHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHhhhHhcCCCC-------CCCCchHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 689999999999999999999999999988876532 2358999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHhCccchhhHHHHHHhcchh---hHHHHHhhcCCCCChHHHHHHHHHHhhhcccc
Q psy3927 97 VEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSG---KFSILEHQMDPSSNFSSYRSTLKAAMWRSAGA 173 (262)
Q Consensus 97 i~~~I~va~~~~~l~Nf~s~~aI~~~L~~~~i~rL~~tw~~l~~~---~~~~l~~l~s~~~n~~~yr~~l~~~~~~~~~~ 173 (262)
|++||+||.+|+++|||||++||++||++++|+||++||+.++++ .+++|+.++++++||++||.+++++
T Consensus 77 i~~fI~iA~~~~~l~Nfns~~aI~~gL~~~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~n~~~yR~~l~~~------- 149 (240)
T 2ije_S 77 IEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNC------- 149 (240)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhccchhhhHHHHHHHhhHHHHHHHHHHHHHHCccchHHHHHHHHHhc-------
Confidence 999999999999999999999999999999999999999999964 6899999999999999999999864
Q ss_pred cccCCCccccchhhhhhHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHHhcCC-CCChh
Q psy3927 174 TDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSP-VLTEN 252 (262)
Q Consensus 174 ~~~~~~p~IP~lg~~l~dl~~i~~~~p~~~~~~liN~~K~~~i~~~i~~~~~~q~~~y~~~~~~~i~~~l~~~~-~~~~~ 252 (262)
.+|||||+|+|++||+++++|+|+++++|+|||+|+++++++|.++.+||+.+|+|.++++|++||.+.+ ..+||
T Consensus 150 ----~~p~IPflg~~L~DL~~i~egnp~~~~~~lINf~K~~~~~~ii~~i~~~q~~~y~~~~~~~i~~~l~~~~~~~~e~ 225 (240)
T 2ije_S 150 ----DPPCVPYLGMYLTDLVFIEEGTPNYTEDGLVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDESFMLDEE 225 (240)
T ss_dssp ----CSSCBCCHHHHHHHHHHHHHHSCSBCTTSCBCHHHHHHHHHHHHHHHHHHHSCCCCCCCHHHHHHHHCCTTCCCHH
T ss_pred ----CCCccCccchHHHHHHHHHhcCCCCCCCCcCcHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHhCcCCCCHH
Confidence 7899999999999999999999999999999999999999999999999999999999999999999987 67889
Q ss_pred hhhcccccCC
Q psy3927 253 DEDPHKTECT 262 (262)
Q Consensus 253 ~L~~~sl~c~ 262 (262)
+||++|++||
T Consensus 226 ~ly~~Sl~~E 235 (240)
T 2ije_S 226 SLYESSLLIE 235 (240)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 9999999997
No 2
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}
Probab=100.00 E-value=8.2e-59 Score=404.11 Aligned_cols=235 Identities=20% Similarity=0.348 Sum_probs=214.8
Q ss_pred CccCccccCCCHHHHHHHHHHHHHHHHhCCCHHHHHhHHhhcCCCCcccccccccCccHHHHHHHHHHHHHHHHHHhcCC
Q psy3927 8 PATDITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKH 87 (262)
Q Consensus 8 ~~~~il~~~~~~~~iA~QLTl~d~~lf~~I~~~e~l~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~ 87 (262)
..++||+ ++|.+||+|||++|+++|++|+|.||++..|.+..+ ...+|++.+++++||.++.||+++||.+
T Consensus 24 ~~fdil~--~~p~elA~QLTlid~~lF~~I~p~E~l~~~w~k~~~-------~~~~pnl~~~i~~fN~ls~wV~~~IL~~ 94 (271)
T 3qxl_A 24 VVFDVLK--VTPEEFASQITLMDIPVFKAIQPEELASCGWSKKEK-------HSLAPNVVAFTRRFNQVSFWVVREILTA 94 (271)
T ss_dssp --CCGGG--SCHHHHHHHHHHHHHHHHHTCCHHHHHHTCTTSTTH-------HHHCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccccc--CCHHHHHHHHHHHHHHHHcCCCHHHHHHhHhccCCc-------CCCCCcHHHHHHHHhHHHHHHHHHhccc
Confidence 4567885 899999999999999999999999999988876421 2468999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhCccchhhHHHHHHhcchh---hHHHHHhhcCCCCChHHHHHHHH
Q psy3927 88 VKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSG---KFSILEHQMDPSSNFSSYRSTLK 164 (262)
Q Consensus 88 ~~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~~L~~~~i~rL~~tw~~l~~~---~~~~l~~l~s~~~n~~~yr~~l~ 164 (262)
++.++||++|++||+||.+|+++|||||++||++||++++|+||++||+.|+++ .|++|+.++++++||++||.+++
T Consensus 95 ~~~~~Ra~~i~kfI~IA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~l~~k~~~~~~~L~~l~~~~~N~~~yR~~l~ 174 (271)
T 3qxl_A 95 QTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIR 174 (271)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHcccchHHHHHHHHHHCCHHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999964 68999999999999999999998
Q ss_pred HHhhhcccccccCCCccccchhhhhhHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHhhcc-CCC-CCCchHHHHH
Q psy3927 165 AAMWRSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQV-TCP-FGKVNKTIMF 242 (262)
Q Consensus 165 ~~~~~~~~~~~~~~~p~IP~lg~~l~dl~~i~~~~p~~~~~~liN~~K~~~i~~~i~~~~~~q~~-~y~-~~~~~~i~~~ 242 (262)
+. ..+|||||+|+||+||+++++|+|++ .++++||.|+++++++++++..||+. +|+ |.+++.||+|
T Consensus 175 ~~----------~~~p~IPflg~~L~DL~fi~~g~p~~-~~~l~n~~k~~~~~~i~~~I~~~Q~~~~Y~~~~~~~~iq~~ 243 (271)
T 3qxl_A 175 SL----------KMVPSIPYLGIYLLDLIYIDSAYPAS-GSIMENEQRSNQMNNILRIIADLQVSCSYDHLTTLPHVQKY 243 (271)
T ss_dssp TT----------TTSCCBCCHHHHHHHHHHHHHHSCSS-SCHHHHHHHHHHHHHHHHHHHHHHHTCCCTTCCCCHHHHHH
T ss_pred hc----------CCCCCCCchHHHHHHHHHHHhcCCCc-ccccccHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHH
Confidence 74 24899999999999999999999997 34567899999999999999999998 995 9999999999
Q ss_pred HhcCCCC------ChhhhhcccccCC
Q psy3927 243 LQSSPVL------TENDEDPHKTECT 262 (262)
Q Consensus 243 l~~~~~~------~~~~L~~~sl~c~ 262 (262)
|.+.+.+ +||++|++|+++|
T Consensus 244 l~~~~~i~~~~~~~ed~~y~lSl~iE 269 (271)
T 3qxl_A 244 LKSVRYIEELQKFVEDDNYKLSLRIE 269 (271)
T ss_dssp HHTSCCCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHhHHHHhhcCCCHHHHHHHHHhcC
Confidence 9997654 6899999999886
No 3
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=100.00 E-value=6.8e-54 Score=432.55 Aligned_cols=231 Identities=26% Similarity=0.406 Sum_probs=214.7
Q ss_pred CccccCCCHHHHHHHHHHHHHHHHhCCCHHHHHhHHhhcCCCCcccccccccCccHHHHHHHHHHHHHHHHHHhcCCCCh
Q psy3927 11 DITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHVKK 90 (262)
Q Consensus 11 ~il~~~~~~~~iA~QLTl~d~~lf~~I~~~e~l~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~~~~ 90 (262)
+|+ +++|.+||+|||++|+++|++|+|.||++..|.+..+ ...+|||.+++++||.+++||+++||.++++
T Consensus 755 ~~~--~~~~~e~A~qlt~~~~~~f~~i~~~e~~~~~~~~~~~-------~~~~~~~~~~~~~~n~~~~wv~~~il~~~~~ 825 (999)
T 4f7z_A 755 TFE--LMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNF-------KKTTANLDLFLRRFNEIQFWVVTEVCLCSQL 825 (999)
T ss_dssp HHT--TSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHCHHHH-------TCCCHHHHHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred chh--cCCHHHHHHHHHHHHHHHHcCCCHHHHHHhHhhcCCC-------CCCChHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 355 5899999999999999999999999999998865421 3468999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhCccchhhHHHHHHhcchh---hHHHHHhhcCCCCChHHHHHHHHHHh
Q psy3927 91 KQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSG---KFSILEHQMDPSSNFSSYRSTLKAAM 167 (262)
Q Consensus 91 ~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~~L~~~~i~rL~~tw~~l~~~---~~~~l~~l~s~~~n~~~yr~~l~~~~ 167 (262)
++||++|++||+||.+|++++||||++||++||++++|+||++||+.|+.+ .|+.|+.|+++++||++||.+++++
T Consensus 826 ~~R~~~~~~~i~ia~~~~~l~Nf~~~~ai~~~l~~~~i~RL~~tw~~~~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~- 904 (999)
T 4f7z_A 826 SKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKL- 904 (999)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHTTSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcCCchhhhHHHHHHHCCHHHHHHHHHHHHHcCCcccHHHHHHHHHhC-
Confidence 999999999999999999999999999999999999999999999999964 6899999999999999999999875
Q ss_pred hhcccccccCCCccccchhhhhhHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCCc------hHHHH
Q psy3927 168 WRSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKV------NKTIM 241 (262)
Q Consensus 168 ~~~~~~~~~~~~p~IP~lg~~l~dl~~i~~~~p~~~~~~liN~~K~~~i~~~i~~~~~~q~~~y~~~~~------~~i~~ 241 (262)
.+|||||||+||+||+++++|+|+++ +|+|||+|+++++++|.++.+||+.+|++.+. .+++.
T Consensus 905 ----------~~p~iP~~g~~l~dl~~~~~gn~~~~-~~linf~k~~~~~~~i~~i~~~q~~~y~~~~~~~~~~~~~~~~ 973 (999)
T 4f7z_A 905 ----------EPPLIPFMPLLIKDMTFTHEGNKTFI-DNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRS 973 (999)
T ss_dssp ----------CSSCBCCHHHHHHHHHHHHHTSCSBS-SSSEEHHHHHHHHHHHHHHHHHTSSCCCCSSCC--CCCHHHHH
T ss_pred ----------CCCeeceehHHHHHHHHHhccCCCCC-CCcCcHHHHHHHHHHHHHHHHHhcCCCCCCccchhhhHHHHHH
Confidence 78999999999999999999999987 89999999999999999999999999987654 46889
Q ss_pred HHhcCCCC-ChhhhhcccccCC
Q psy3927 242 FLQSSPVL-TENDEDPHKTECT 262 (262)
Q Consensus 242 ~l~~~~~~-~~~~L~~~sl~c~ 262 (262)
|+.+.+.. ++++||++|++||
T Consensus 974 ~~~~~~~~~~~~~l~~~S~~~E 995 (999)
T 4f7z_A 974 YVRQLNVIDNQRTLSQMSHRLE 995 (999)
T ss_dssp HHHTCCCCCCHHHHHHHHHTTS
T ss_pred HHHhCCCCCCHHHHHHHHHhcC
Confidence 99998766 6899999999998
No 4
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=100.00 E-value=2e-54 Score=405.60 Aligned_cols=231 Identities=21% Similarity=0.313 Sum_probs=209.4
Q ss_pred cCccccCCCHHHHHHHHHHHHHHHHhCCCHHHHHhHHhhcCCCCcccccccccCccHHHHHHHHHHHHHHHHHHhcCCCC
Q psy3927 10 TDITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHVK 89 (262)
Q Consensus 10 ~~il~~~~~~~~iA~QLTl~d~~lf~~I~~~e~l~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~~~ 89 (262)
++++ +++|.+||+|||++|+++|++|+|.||++..|.+... ...+|++.+++.+||.++.||+.+||.+++
T Consensus 215 ~~ll--~~~p~elA~QLTlid~~lf~~I~~~E~l~~~w~~~~~-------~~~~pnl~~~i~~~n~ls~wV~~~Il~~~~ 285 (490)
T 2ii0_A 215 FDLL--TLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDK-------EINSPNLLKMIRHTTNLTLWFEKCIVETEN 285 (490)
T ss_dssp CCTT--TSCHHHHHHHHHHHHHHHHHHCCGGGTGGGGGGSTTH-------HHHCHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred chhh--ccCHHHHHHHHHHHHHHHHHCCCHHHHHHHHhcCCCc-------CCCCccHHHHHHHHhHHHHHHHHHhcCCCC
Confidence 4566 4899999999999999999999999999998976432 236899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhCccchhhHHHHHHhcchhh---HHHHHhhcCCCCChHHHHHHHHHH
Q psy3927 90 KKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSGK---FSILEHQMDPSSNFSSYRSTLKAA 166 (262)
Q Consensus 90 ~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~~L~~~~i~rL~~tw~~l~~~~---~~~l~~l~s~~~n~~~yr~~l~~~ 166 (262)
+++||++|++||+||.+|+++|||||++||++||++++|+||++||+.|+++. +++|..+ +++||++||.++++.
T Consensus 286 ~~~Ra~~i~kfI~iA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l~~l--~~~n~~~yR~~l~~~ 363 (490)
T 2ii0_A 286 LEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLAKLRSI 363 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHHSCHHHHHHHHHHHHH--HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccchhhhHHHHHHHCCHHHHHHHHHHHHh--chHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999764 4555555 357899999999864
Q ss_pred hhhcccccccCCCccccchhhhhhHHHHHhhcCCCCCCCC---cchHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHHH
Q psy3927 167 MWRSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNG---HINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFL 243 (262)
Q Consensus 167 ~~~~~~~~~~~~~p~IP~lg~~l~dl~~i~~~~p~~~~~~---liN~~K~~~i~~~i~~~~~~q~~~y~~~~~~~i~~~l 243 (262)
.+|||||+|+||+||+++++|+|+++++| +|||+|+++++++|.++.+||+.+|++.++++|++||
T Consensus 364 -----------~~p~IPflg~~L~DL~~i~egnp~~~~~~~~~lINf~K~r~~~~ii~~i~~~Q~~~Y~~~~~~~i~~~l 432 (490)
T 2ii0_A 364 -----------NPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFF 432 (490)
T ss_dssp -----------CSSCBCCCHHHHHHHHHHHHTSCSEEEETTEEEEEHHHHHHHHHHHHHHGGGSSCCCSCCCCHHHHHHH
T ss_pred -----------CCCcccCcHHHHHHHHHHHhcCCcccCCCCCeEEcHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHH
Confidence 68999999999999999999999998654 9999999999999999999999999999999999999
Q ss_pred hcCCCC---Ch----hhhhcccccCC
Q psy3927 244 QSSPVL---TE----NDEDPHKTECT 262 (262)
Q Consensus 244 ~~~~~~---~~----~~L~~~sl~c~ 262 (262)
.+...+ +| |+||++|++||
T Consensus 433 ~~l~~~~~~~e~~~ed~ly~~Sl~~E 458 (490)
T 2ii0_A 433 ENLNPMGNSMEKEFTDYLFNKSLEIE 458 (490)
T ss_dssp HTCCTTTTSCHHHHHHHHHHHHHHHS
T ss_pred HhccccccCchhhhHHHHHHHHHhhC
Confidence 987544 53 67999999997
No 5
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=100.00 E-value=2.9e-53 Score=412.16 Aligned_cols=230 Identities=26% Similarity=0.404 Sum_probs=212.8
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHhCCCHHHHHhHHhhcCCCCcccccccccCccHHHHHHHHHHHHHHHHHHhcCCCChH
Q psy3927 12 ITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHVKKK 91 (262)
Q Consensus 12 il~~~~~~~~iA~QLTl~d~~lf~~I~~~e~l~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~~~~~ 91 (262)
|+ +++|.+||+|||++|+++|++|+|.||++..|.+... ...+|++.+++++||.++.||+++||.+++++
T Consensus 451 l~--~~~~~elA~QLTl~d~~lf~~I~~~E~l~~~~~~~~~-------~~~~pni~~~i~~fN~ls~wV~~~Il~~~~~~ 521 (694)
T 3cf6_E 451 FE--LMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNF-------KKTTANLDLFLRRFNEIQFWVVTEVCLCSQLS 521 (694)
T ss_dssp HT--TSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHCGGGT-------TCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHH
T ss_pred hh--cCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhccCCC-------CCCCchHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 55 5899999999999999999999999999998876422 23689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhCccchhhHHHHHHhcchh---hHHHHHhhcCCCCChHHHHHHHHHHhh
Q psy3927 92 QRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSG---KFSILEHQMDPSSNFSSYRSTLKAAMW 168 (262)
Q Consensus 92 ~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~~L~~~~i~rL~~tw~~l~~~---~~~~l~~l~s~~~n~~~yr~~l~~~~~ 168 (262)
+|+++|++||+||.+|+++|||||++||++||++++|+||++||+.|+++ .|++|+.++++++||++||.+++++
T Consensus 522 ~Ra~~i~~fI~iA~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~N~~~yR~~l~~~-- 599 (694)
T 3cf6_E 522 KRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKL-- 599 (694)
T ss_dssp HHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCCcchhhhHHHHHHCCHHHHHHHHHHHHHhCccccHHHHHHHHHhc--
Confidence 99999999999999999999999999999999999999999999999974 6889999999999999999999875
Q ss_pred hcccccccCCCccccchhhhhhHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHhhccCCCCCC------chHHHHH
Q psy3927 169 RSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGK------VNKTIMF 242 (262)
Q Consensus 169 ~~~~~~~~~~~p~IP~lg~~l~dl~~i~~~~p~~~~~~liN~~K~~~i~~~i~~~~~~q~~~y~~~~------~~~i~~~ 242 (262)
.+|||||+|+||+||+++++|+|+++ +|+|||+|+++++++|..+..||+.+|++.+ .++++.|
T Consensus 600 ---------~~p~IPflg~~L~DL~fi~egn~~~~-~~lINf~K~r~i~~ii~~i~~~q~~~y~~~~~~~~~~~~~i~~~ 669 (694)
T 3cf6_E 600 ---------EPPLIPFMPLLIKDMTFTHEGNKTFI-DNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNHQDVRSY 669 (694)
T ss_dssp ---------CSSCBCCHHHHHHHHHHHHHHSCSEE-TTEEEHHHHHHHHHHHHHHHHHTSSCCC---------CHHHHHH
T ss_pred ---------CCCCcccHHHHHHHHHHHHcCCCchh-ccCcCHHHHHHHHHHHHHHHHHhhCCCCcCccccccchHHHHHH
Confidence 68999999999999999999999986 8999999999999999999999999998865 5789999
Q ss_pred HhcCCCC-ChhhhhcccccCC
Q psy3927 243 LQSSPVL-TENDEDPHKTECT 262 (262)
Q Consensus 243 l~~~~~~-~~~~L~~~sl~c~ 262 (262)
|.+.+.+ ++++||++|++||
T Consensus 670 l~~l~~~~~e~~l~~lSl~~E 690 (694)
T 3cf6_E 670 VRQLNVIDNQRTLSQMSHRLE 690 (694)
T ss_dssp HTSCCCCCCHHHHHHHHHHHC
T ss_pred HHhCCCCCCHHHHHHHHHhcC
Confidence 9999877 4789999999997
No 6
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=100.00 E-value=6.7e-51 Score=410.83 Aligned_cols=232 Identities=21% Similarity=0.307 Sum_probs=210.3
Q ss_pred ccCccccCCCHHHHHHHHHHHHHHHHhCCCHHHHHhHHhhcCCCCcccccccccCccHHHHHHHHHHHHHHHHHHhcCCC
Q psy3927 9 ATDITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHV 88 (262)
Q Consensus 9 ~~~il~~~~~~~~iA~QLTl~d~~lf~~I~~~e~l~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~~ 88 (262)
.++|++ ++|.+||+|||++|+++|++|.|.||++..|.+..+ ...+|++.+++.+||.+++||+.+||.++
T Consensus 773 ~~~ll~--~~~~elA~QLTlid~~lf~~I~p~E~l~~~w~~~~~-------~~~~pn~~~~i~~~n~~s~wV~~~Il~~~ 843 (1049)
T 3ksy_A 773 TFDLLT--LHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDK-------EINSPNLLKMIRHTTNLTLWFEKCIVETE 843 (1049)
T ss_dssp TCCTTT--SCHHHHHHHHHHHHHHHHHHCCGGGGSSSTTTSSCH-------HHHCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred Cccccc--CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCCCc-------ccCCchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 457774 899999999999999999999999999999977532 24589999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHhCccchhhHHHHHHhcchhh---HHHHHhhcCCCCChHHHHHHHHH
Q psy3927 89 KKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSGK---FSILEHQMDPSSNFSSYRSTLKA 165 (262)
Q Consensus 89 ~~~~Ra~~i~~~I~va~~~~~l~Nf~s~~aI~~~L~~~~i~rL~~tw~~l~~~~---~~~l~~l~s~~~n~~~yr~~l~~ 165 (262)
++++||++|++||+||.+|+++|||||++||++||++++|+||++||+.|+++. ++.|+.+ +++||++||.++++
T Consensus 844 ~~~~Ra~~i~~fI~iA~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l~~l--~~~n~~~yR~~l~~ 921 (1049)
T 3ksy_A 844 NLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLAKLRS 921 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSHHHHTCTTTTTSSCHHHHHHHHHHHTT--THHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcccchhHhHHHHHHHCCHHHHHHHHHHHhh--chHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999865 5555555 45789999999986
Q ss_pred HhhhcccccccCCCccccchhhhhhHHHHHhhcCCCCCC---CCcchHHHHHHHHHHHHHHHHhhccCCCCCCchHHHHH
Q psy3927 166 AMWRSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLP---NGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMF 242 (262)
Q Consensus 166 ~~~~~~~~~~~~~~p~IP~lg~~l~dl~~i~~~~p~~~~---~~liN~~K~~~i~~~i~~~~~~q~~~y~~~~~~~i~~~ 242 (262)
. .+|||||+|+||+||+++++|+|++++ +|+|||+|+++++++|.++.+||+.+|+|.++++|+.|
T Consensus 922 ~-----------~~p~IPflg~~L~DL~~i~eg~p~~~~~~~~~lINf~K~~~~~~ii~~i~~~Q~~~Y~~~~~~~i~~~ 990 (1049)
T 3ksy_A 922 I-----------NPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRF 990 (1049)
T ss_dssp C-----------CSSCCCCTHHHHHHHHHHHHHSCSEEEETTEEEEEHHHHHHHHHHHHHHHTTTSSCCCCCCCHHHHHH
T ss_pred C-----------CCCccceeHHHHHHHHHHHccCCccccCCCCCeEcHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHH
Confidence 4 689999999999999999999999874 37999999999999999999999999999999999999
Q ss_pred HhcCC---CCCh----hhhhcccccCC
Q psy3927 243 LQSSP---VLTE----NDEDPHKTECT 262 (262)
Q Consensus 243 l~~~~---~~~~----~~L~~~sl~c~ 262 (262)
|.+.. .++| |++|++|++||
T Consensus 991 l~~l~~~~~~~e~~~~d~ly~lSl~~E 1017 (1049)
T 3ksy_A 991 FENLNPMGNSMEKEFTDYLFNKSLEIE 1017 (1049)
T ss_dssp HHSCCTTTTSCHHHHHHHHHHHHHHHS
T ss_pred HHhcccccccCchhhHHHHHHHHHHhC
Confidence 99853 4566 45999999987
No 7
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=144.30 Aligned_cols=122 Identities=20% Similarity=0.330 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHhHHhhcCCCCc---ccccccccCccHHHHHHHHHHHHHHHHHHhcCCC-ChH
Q psy3927 16 CPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLE---TSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHV-KKK 91 (262)
Q Consensus 16 ~~~~~~iA~QLTl~d~~lf~~I~~~e~l~~~~~~~~~~~---~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~~-~~~ 91 (262)
+.+|..+|.|||.+|+++|+.....+-....++...... -+.+ .+ --..++.++|.+..||+.+||.+. +.+
T Consensus 47 ~~~~~~lA~hlt~~D~~l~~~l~vt~~~~~~mgv~sglELitlPhG--~q--lRldlleR~~~l~~~va~~IL~c~g~~~ 122 (331)
T 3t6g_A 47 EVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHG--RQ--LRLDLLERFHTMSIMLAVDILGSTGSAE 122 (331)
T ss_dssp TSCHHHHHHHHHHHHHHHTTSSSCCHHHHHHHSSSCHHHHTTSGGG--HH--HHHHHHHHHHHHHHHHHHHHHTCCSCHH
T ss_pred ccChHHHHHHHHHHHHHHHHhcCCCHHHHhhhcCCCcceeEEeccc--ch--hhHHHHHHhcchHHHHHHHHhcCCCCHH
Confidence 689999999999999999987654333322221110000 0000 00 123689999999999999999996 899
Q ss_pred HHHHHHHHHHHHHHHHh-hcCChhHHHHHHHHhCccchhhHHHHHHhcchh
Q psy3927 92 QRVKVVEFWIEAARECF-NIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSG 141 (262)
Q Consensus 92 ~Ra~~i~~~I~va~~~~-~l~Nf~s~~aI~~~L~~~~i~rL~~tw~~l~~~ 141 (262)
+|+.++.+||+||.+|+ .+||+++++||+.||+.+.|+||++||..++++
T Consensus 123 ~Ra~lL~k~IqiA~~Lk~~~gnL~sF~AIm~aL~~pqVsRLe~TW~~Lr~k 173 (331)
T 3t6g_A 123 ERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLEQTWVTLRQR 173 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCBHHHHHHHHHHHTSHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhhccHHHHHHHHHHHHhhhh
Confidence 99999999999999999 899999999999999999999999999999964
No 8
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=142.15 Aligned_cols=122 Identities=20% Similarity=0.313 Sum_probs=95.6
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCHHHHHhHHhhcCCCCc---ccccccccCccHHHHHHHHHHHHHHHHHHhcCCC-ChH
Q psy3927 16 CPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLE---TSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHV-KKK 91 (262)
Q Consensus 16 ~~~~~~iA~QLTl~d~~lf~~I~~~e~l~~~~~~~~~~~---~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~~-~~~ 91 (262)
+.+|..+|.|||.+|+++++.....+-....++...... -+.+ .+ --..++.+||.++.||+.+||.+. +.+
T Consensus 46 ~~~~~~lA~hlt~~D~~lar~l~~t~~~~~~mgv~sglELitlPhG--~q--lRldlleR~~~l~~wva~~IL~C~~~~~ 121 (333)
T 3t6a_A 46 NNDPKVIAQHVLSMDCRVARILGVSEEMRRNMGVSSGLELITLPHG--HQ--LRLDIIERHNTMAIGIAVDILGCTGTLE 121 (333)
T ss_dssp HSCHHHHHHHHHHHHHHHTTSSCCCHHHHHHHSSSCHHHHTTSGGG--HH--HHHHHHHHHHHHHHHHHHHHHTSCCSHH
T ss_pred ccChHHHHHHHHHHHHHHHHhcCCcHHHHhhhcCCCcceEEEeecc--ch--hhhHHHHHhcccHHHHHHHHHhCCCchH
Confidence 589999999999999999877554443322221110000 0000 00 113689999999999999999975 488
Q ss_pred HHHHHHHHHHHHHHHHh-hcCChhHHHHHHHHhCccchhhHHHHHHhcchh
Q psy3927 92 QRVKVVEFWIEAARECF-NIGNFNSLMAIIAGLNMSPISRLKKTWNKIQSG 141 (262)
Q Consensus 92 ~Ra~~i~~~I~va~~~~-~l~Nf~s~~aI~~~L~~~~i~rL~~tw~~l~~~ 141 (262)
+|+.++.+||++|.+|+ .+||++|++||+.||+.+.|+||++||..++++
T Consensus 122 eR~~lL~k~IqiA~~Lk~~~gNL~sf~AVm~aL~~pqVSRL~~TW~~Lr~k 172 (333)
T 3t6a_A 122 DRAATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQITRLEKTWTALRHQ 172 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHSHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccHHHHHHHHHHHHhhHH
Confidence 99999999999999999 899999999999999999999999999999864
No 9
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=48.16 E-value=27 Score=24.47 Aligned_cols=35 Identities=11% Similarity=0.323 Sum_probs=30.9
Q ss_pred HHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHhh
Q psy3927 193 YFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWK 227 (262)
Q Consensus 193 ~~i~~~~p~~~~~~liN~~K~~~i~~~i~~~~~~q 227 (262)
.++++..|-+.++|.+|.....++++.+.+.+.-+
T Consensus 36 ~fi~~~cPWFp~eGtl~l~~W~kVG~~L~~~~~~~ 70 (94)
T 1bax_A 36 DFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTF 70 (94)
T ss_pred HHHHHhCCCcCcCCcccHHHHHHHHHHHHHHHHHc
Confidence 47888899999999999999999999999877554
No 10
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=43.56 E-value=13 Score=19.00 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=14.7
Q ss_pred ChHHHHHHHHHHhhhcccccccCCCccccchh
Q psy3927 155 NFSSYRSTLKAAMWRSAGATDERQRIVIPFFS 186 (262)
Q Consensus 155 n~~~yr~~l~~~~~~~~~~~~~~~~p~IP~lg 186 (262)
.|+.+|+..++... .-.|.||.+.
T Consensus 2 rfkrfrkkfkklfk--------klspvipllh 25 (27)
T 2ket_A 2 RFKRFRKKFKKLFK--------KLSPVIPLLH 25 (27)
T ss_dssp CHHHHHHHHHHHHH--------HHSCSCHHHH
T ss_pred cHHHHHHHHHHHHH--------hcCcccchhc
Confidence 45666666555433 2478888774
No 11
>2voi_B BH3-interacting domain death agonist P13; protein-protein complex, BCL-2, membrane, apoptosis, Pro-surviVal, mitochondrion, phosphoprotein; 2.1A {Mus musculus}
Probab=37.53 E-value=35 Score=19.12 Aligned_cols=20 Identities=35% Similarity=0.363 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhCCCH
Q psy3927 20 NHIAQQLTHIELERLSFIGP 39 (262)
Q Consensus 20 ~~iA~QLTl~d~~lf~~I~~ 39 (262)
..||+||.-+--.++.+|+|
T Consensus 9 ~~ia~~la~igd~~d~~i~p 28 (34)
T 2voi_B 9 HNIARHLAQIGDEMDHNIQP 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHccchhhhhhcccCc
Confidence 46999999999999999999
No 12
>2kbw_B BH3-interacting domain death agonist; MCL-1, BID_BH3, complex, alternative splicing, apoptosis, CY developmental protein, differentiation, membrane; NMR {Homo sapiens}
Probab=36.27 E-value=39 Score=19.05 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhCCCH
Q psy3927 20 NHIAQQLTHIELERLSFIGP 39 (262)
Q Consensus 20 ~~iA~QLTl~d~~lf~~I~~ 39 (262)
..||+||.-+--.++.+|+|
T Consensus 13 ~~ia~qla~igd~~d~~i~p 32 (35)
T 2kbw_B 13 RNIARHLAQVGDSMDRSIPP 32 (35)
T ss_dssp HHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHccchhhhhhcccCC
Confidence 46999999999999999988
No 13
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=34.89 E-value=11 Score=20.53 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=12.2
Q ss_pred HHHHHHHhhcCC-hhHH
Q psy3927 101 IEAARECFNIGN-FNSL 116 (262)
Q Consensus 101 I~va~~~~~l~N-f~s~ 116 (262)
|.||++++.+|+ ||..
T Consensus 6 iwIAQELRRIGDeFNa~ 22 (33)
T 1pq1_B 6 IRIAQELRRIGDEFNET 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcc
Confidence 678999988887 5653
No 14
>2wh6_B BCL-2-like protein 11; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Homo sapiens} PDB: 2v6q_B 2nl9_B 3fdl_B 3io8_B 2vm6_B 3io9_B 3d7v_B 3kj1_B 3kz0_C 3kj2_B
Probab=32.66 E-value=6.1 Score=20.38 Aligned_cols=15 Identities=47% Similarity=0.594 Sum_probs=10.0
Q ss_pred HHHHHHHhhcCC-hhH
Q psy3927 101 IEAARECFNIGN-FNS 115 (262)
Q Consensus 101 I~va~~~~~l~N-f~s 115 (262)
|.||++++.+|+ ||.
T Consensus 6 ~~iAqELRRIGDeFN~ 21 (26)
T 2wh6_B 6 IWIAQELRRIGDEFNA 21 (26)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHhh
Confidence 567888877765 443
No 15
>3kj0_B BCL-2-like protein 11; BH3, apoptosis, protein-peptide complex, alternative splicing, cytoplasm, developmental protein, differentiation; 1.70A {Homo sapiens} PDB: 2pqk_B
Probab=31.49 E-value=14 Score=19.10 Aligned_cols=16 Identities=44% Similarity=0.528 Sum_probs=10.6
Q ss_pred HHHHHHHhhcCC-hhHH
Q psy3927 101 IEAARECFNIGN-FNSL 116 (262)
Q Consensus 101 I~va~~~~~l~N-f~s~ 116 (262)
|.+|++++.+|+ ||..
T Consensus 8 ~wiAqELRRIGDeFN~~ 24 (27)
T 3kj0_B 8 IWYAQELRRIGDEFNAY 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 567888877765 5543
No 16
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=28.34 E-value=29 Score=20.08 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHH
Q psy3927 16 CPTPNHIAQQLTH 28 (262)
Q Consensus 16 ~~~~~~iA~QLTl 28 (262)
|++|.|+|.|.|-
T Consensus 2 dfnpseia~~v~~ 14 (46)
T 1hgv_A 2 DFNPSEVASQVTN 14 (46)
T ss_dssp CSCTHHHHHHHHT
T ss_pred CCCHHHHHHHHHH
Confidence 6899999999873
No 17
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=25.51 E-value=1.5e+02 Score=19.72 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHhC
Q psy3927 96 VVEFWIEAARECFNIGNFNSLMAIIAGLN 124 (262)
Q Consensus 96 ~i~~~I~va~~~~~l~Nf~s~~aI~~~L~ 124 (262)
-|.--++.|.++--+|||.+....+.|..
T Consensus 11 ~i~e~~k~ARe~Al~GnYdta~~yY~g~~ 39 (78)
T 2rpa_A 11 MIVENVKLAREYALLGNYDSAMVYYQGVL 39 (78)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 36667889999999999999998888763
No 18
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=22.24 E-value=55 Score=20.84 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=15.0
Q ss_pred cCCCCChHHHHHHHHHH
Q psy3927 150 MDPSSNFSSYRSTLKAA 166 (262)
Q Consensus 150 ~s~~~n~~~yr~~l~~~ 166 (262)
+||++.|..||.+++..
T Consensus 36 fSp~Dky~~yR~~~kk~ 52 (60)
T 2apo_B 36 FSLEDRWGKYRRMLKRA 52 (60)
T ss_dssp CCTTCTTHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHH
Confidence 58899999999999875
No 19
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=20.83 E-value=61 Score=20.62 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=15.1
Q ss_pred cCCCCChHHHHHHHHHH
Q psy3927 150 MDPSSNFSSYRSTLKAA 166 (262)
Q Consensus 150 ~s~~~n~~~yr~~l~~~ 166 (262)
+||++.|..||.+++..
T Consensus 35 fSP~Dky~~yR~~lKk~ 51 (60)
T 2aus_D 35 FSPEDPYGEYRRRLKRE 51 (60)
T ss_dssp CCSCCTTHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHH
Confidence 58899999999999975
Done!