RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3927
(262 letters)
>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS
guanine nucleotide releasing FACT specific nucleotide
exchange factor; 2.20A {Mus musculus}
Length = 240
Score = 224 bits (574), Expect = 5e-74
Identities = 57/240 (23%), Positives = 103/240 (42%), Gaps = 23/240 (9%)
Query: 19 PNHIAQQLTHIELERLSFIGPEEFV-QAFAKENPHLETSFKDMKRTRNLENYVQWFNRLS 77
IA+QLT ++ I EEF Q + K + +RT + + FN +S
Sbjct: 6 ALEIAEQLTLLDHLVFKSIPYEEFFGQGWMKAEKY--------ERTPYIMKTTKHFNHVS 57
Query: 78 YLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWNK 137
+A+E++++ R +E W+ A C + N+N+++ I + +N S I RLKKTW K
Sbjct: 58 NFIASEIIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLK 117
Query: 138 IQSG---KFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLYF 194
+ L+ + F + R +L+ +P+ + + DL F
Sbjct: 118 VSKQTKSLLDKLQKLVSSDGRFKNLRESLRNC-----------DPPCVPYLGMYLTDLVF 166
Query: 195 LNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPVLTENDE 254
+ EG N +G +NF K ++ + E ++Q T K I +L + + +
Sbjct: 167 IEEGTPNYTEDGLVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLDESFMLDEES 226
>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain
homology, guanine-nucleotide exchange factor, S GTPase
RAL subfamily; 2.24A {Homo sapiens}
Length = 271
Score = 201 bits (512), Expect = 3e-64
Identities = 51/250 (20%), Positives = 106/250 (42%), Gaps = 30/250 (12%)
Query: 18 TPNHIAQQLTHIELERLSFIGPEEFV-QAFAKENPHLETSFKDMKRTRNLENYVQWFNRL 76
TP A Q+T +++ I PEE ++K+ H N+ + + FN++
Sbjct: 32 TPEEFASQITLMDIPVFKAIQPEELASCGWSKKEKH--------SLAPNVVAFTRRFNQV 83
Query: 77 SYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKKTWN 136
S+ V E++ K R +++ +++ A++ + N +SLM++++ L +PI RL KTW
Sbjct: 84 SFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWA 143
Query: 137 KIQS---GKFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDLY 193
+ F L++ M N+ R +++ + IP+ + + DL
Sbjct: 144 LLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSL----------KMVPSIPYLGIYLLDLI 193
Query: 194 FLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQVTCP---FGKVNKTIMFLQSSPVLT 250
+++ + N ++ Q+ + I QV+C + +L+S +
Sbjct: 194 YIDSAYPAS-GSIMENEQRSNQMNN-ILRIIADLQVSCSYDHLTTLPHVQKYLKSVRYI- 250
Query: 251 ENDEDPHKTE 260
+E E
Sbjct: 251 --EELQKFVE 258
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 213 bits (542), Expect = 2e-63
Identities = 53/251 (21%), Positives = 99/251 (39%), Gaps = 24/251 (9%)
Query: 15 LCPTPNHIAQQLTHIELERLSFIGPEEFV-QAFAKENPHLETSFKDMKRTRNLENYVQWF 73
L P IA+QLT +E + + P E V + KE+ + NL ++
Sbjct: 777 LTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKE--------INSPNLLKMIRHT 828
Query: 74 NRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKK 133
L+ +V+ ++RV VV IE + + NFN ++ +++ +N SP+ RL
Sbjct: 829 TNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDH 888
Query: 134 TWNKIQSGKFSILEH-QMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDL 192
T+ +I S + ILE ++ Y + L++ +PFF + + ++
Sbjct: 889 TFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSI-----------NPPCVPFFGIYLTNI 937
Query: 193 YFLNEGCTNKLP---NGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPVL 249
EG L INF K ++A+ E ++ + F ++ +
Sbjct: 938 LKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPM 997
Query: 250 TENDEDPHKTE 260
+ E
Sbjct: 998 GNSMEKEFTDY 1008
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo
sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S*
1nvw_S* 1nvx_S* 1bkd_S
Length = 490
Score = 201 bits (512), Expect = 5e-62
Identities = 53/245 (21%), Positives = 99/245 (40%), Gaps = 24/245 (9%)
Query: 15 LCPTPNHIAQQLTHIELERLSFIGPEEFV-QAFAKENPHLETSFKDMKRTRNLENYVQWF 73
L P IA+QLT +E + + P E V + KE+ + NL ++
Sbjct: 218 LTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKE--------INSPNLLKMIRHT 269
Query: 74 NRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKK 133
L+ +V+ ++RV VV IE + + NFN ++ +++ +N SP+ RL
Sbjct: 270 TNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDH 329
Query: 134 TWNKIQSGKFSILEH-QMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDL 192
T+ +I S + ILE ++ Y + L++ +PFF + + ++
Sbjct: 330 TFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSI-----------NPPCVPFFGIYLTNI 378
Query: 193 YFLNEGCTNKLP---NGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPVL 249
EG L INF K ++A+ E ++ + F ++ +
Sbjct: 379 LKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPM 438
Query: 250 TENDE 254
+ E
Sbjct: 439 GNSME 443
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4,
CAMP, SP-camps, GEF, gunanine nucleotide exchange
factor, G-protein, GTP-binding, nucleotide-binding; HET:
SP1; 2.20A {Mus musculus}
Length = 694
Score = 201 bits (511), Expect = 3e-60
Identities = 63/258 (24%), Positives = 107/258 (41%), Gaps = 30/258 (11%)
Query: 7 NPATDITELCPTPNHIAQQLTHIELERLSFIGPEEFV-QAFAKENPHLETSFKDMKRTRN 65
T T + +A Q+T + E + + E + F + N K T N
Sbjct: 444 TTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHNFK--------KTTAN 495
Query: 66 LENYVQWFNRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNM 125
L+ +++ FN + + V TEV + +RV++++ +I+ A C N NS AI+ GL+
Sbjct: 496 LDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSN 555
Query: 126 SPISRLKKTWNKIQSG---KFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVI 182
+SRL TW K+ S ++ E MDPS N +YR T + +I
Sbjct: 556 VAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKL-----------EPPLI 604
Query: 183 PFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQV------TCPFGKV 236
PF LL+KD+ F +EG + + +NFEK +A ++
Sbjct: 605 PFMPLLIKDMTFTHEGNKTFI-DNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNH 663
Query: 237 NKTIMFLQSSPVLTENDE 254
+++ V+
Sbjct: 664 QDVRSYVRQLNVIDNQRT 681
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 202 bits (515), Expect = 8e-60
Identities = 63/258 (24%), Positives = 107/258 (41%), Gaps = 30/258 (11%)
Query: 7 NPATDITELCPTPNHIAQQLTHIELERLSFIGPEEFV-QAFAKENPHLETSFKDMKRTRN 65
T T + +A Q+T + E + + E + F + N K T N
Sbjct: 749 TTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELELIYHTFGRHN--------FKKTTAN 800
Query: 66 LENYVQWFNRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNM 125
L+ +++ FN + + V TEV + +RV++++ +I+ A C N NS AI+ GL+
Sbjct: 801 LDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSN 860
Query: 126 SPISRLKKTWNKIQSG---KFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVI 182
+SRL TW K+ S ++ E MDPS N +YR T + +I
Sbjct: 861 VAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKL-----------EPPLI 909
Query: 183 PFFSLLVKDLYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWKQV------TCPFGKV 236
PF LL+KD+ F +EG + + +NFEK +A ++
Sbjct: 910 PFMPLLIKDMTFTHEGNKTFI-DNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQANKNH 968
Query: 237 NKTIMFLQSSPVLTENDE 254
+++ V+
Sbjct: 969 QDVRSYVRQLNVIDNQRT 986
>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology
domain, GTPase exchange factor, signaling Pro; HET: POG;
2.40A {Homo sapiens}
Length = 333
Score = 126 bits (318), Expect = 7e-35
Identities = 36/203 (17%), Positives = 71/203 (34%), Gaps = 20/203 (9%)
Query: 15 LCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFN 74
P IAQ + ++ +G E ++ + LE + + ++ N
Sbjct: 45 TNNDPKVIAQHVLSMDCRVARILGVSEEMRRNMGVSSGLELITLPHGH-QLRLDIIERHN 103
Query: 75 RLSYLVATEVVKHVKK-KQRVKVVEFWIEAARECFN-IGNFNSLMAIIAGLNMSPISRLK 132
++ +A +++ + R + I+ A E + +G+ S A++ L M I+RL+
Sbjct: 104 TMAIGIAVDILGCTGTLEDRAATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQITRLE 163
Query: 133 KTWNKIQSG---KFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLV 189
KTW ++ + E Q+ P S + +P +
Sbjct: 164 KTWTALRHQYTQTAILYEKQLKPFSKLLHEGREST---------CVPPNNVSVPL----L 210
Query: 190 KDLYFLNEGCTNKLPNGHINFEK 212
L L E G +EK
Sbjct: 211 MPLVTLMERQAVTF-EGTDMWEK 232
>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase
exchange factor, focal-adhesio targeting domain,
signaling protein; 2.50A {Homo sapiens}
Length = 331
Score = 109 bits (273), Expect = 2e-28
Identities = 33/205 (16%), Positives = 73/205 (35%), Gaps = 21/205 (10%)
Query: 19 PNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSY 78
+A+ +T ++ +G + +Q +E R L+ ++ F+ +S
Sbjct: 50 ARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRLD-LLERFHTMSI 108
Query: 79 LVATEVVKHVKK-KQRVKVVEFWIEAARECFN-IGNFNSLMAIIAGLNMSPISRLKKTWN 136
++A +++ ++R ++ I+ A E +GN S A++ L+M+ ISRL++TW
Sbjct: 109 MLAVDILGSTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLEQTWV 168
Query: 137 KIQSG---KFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPF---FSLLVK 190
++ + E ++ P + P L++
Sbjct: 169 TLRQRHTEGAILYEKKLKPFLKSLNEGKEGPPLS-----------NTTFPHVLPLITLLE 217
Query: 191 DLYFLNEGCTNKLPNGHINFEKFWQ 215
EG + E
Sbjct: 218 SDSAPPEG-PEPWGSTEHGVEVVLA 241
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.009
Identities = 32/216 (14%), Positives = 66/216 (30%), Gaps = 68/216 (31%)
Query: 31 LERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHVKK 90
+ L FIG +A+ P+ ++ + S +++ + ++ +
Sbjct: 300 ITVLFFIG-VRCYEAY----PNTSLPPSILEDSLENNE-----GVPSPMLS---ISNLTQ 346
Query: 91 KQRVKVVEFWIEAARECF------NIGNFNS-LMAIIAGLNMSPIS------RLKKTWNK 137
+Q V+ ++ I N +++G P S L+K K
Sbjct: 347 EQ----VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG---PPQSLYGLNLTLRKA--K 397
Query: 138 IQSG------KFSILEHQMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKD 191
SG FS E ++ S+ F L + PF S L+
Sbjct: 398 APSGLDQSRIPFS--ERKLKFSNRF------L---------------PVASPFHSHLLVP 434
Query: 192 LYFLNEGCTNKLPNGHINFEKFWQLAKQVTEFITWK 227
++ L +++F + V +
Sbjct: 435 ---ASDLINKDLVKNNVSFNAK-DIQIPVYDTFDGS 466
Score = 31.2 bits (70), Expect = 0.40
Identities = 49/349 (14%), Positives = 95/349 (27%), Gaps = 126/349 (36%)
Query: 5 IVNPATDITELCPTPNHI-AQQL----------------------THIEL-ER-LSFIGP 39
+ + + + L PT + A QL T EL + L ++
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 40 E------------------EFVQAFAKENP-H-LETSFKDMKRTRNLENYVQWFNRLSYL 79
EF + + N H L T ++ + +Y+
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK-ELI--KNYI 127
Query: 80 VATEVVKHVKKKQ------------RVKVV---------EFWIEAARECFNI--GNFNSL 116
A + K K+ ++V + + E R+ + L
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 117 MAIIAGLNMSPISRLKKTWNKIQSGKFSI---LEHQMD-PSSNF---------------- 156
+ A +S + R K+ + +I LE+ + P ++
Sbjct: 188 IKFSAET-LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL 246
Query: 157 SSYRSTLKAAMW-------RSAGATDERQRIVIPFFSLLVKDLYFLNEGCTNKLPNGHIN 209
+ Y T K + GAT Q +V
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS------------------ 288
Query: 210 FEKFWQLAKQVTEFITW----KQVTCPFGKVNKTIMFLQSSPVLTENDE 254
+E F+ ++ + + P + +I L+ S EN+E
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI--LEDS---LENNE 332
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.069
Identities = 36/244 (14%), Positives = 71/244 (29%), Gaps = 72/244 (29%)
Query: 51 PHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKH-VKKKQRVKVVE--FWI-----E 102
E +F D +++++ +++ E + H + K V FW E
Sbjct: 23 SVFEDAFVDNFDCKDVQDM------PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 103 AARECFNIG----NFNSLMAIIAGLNMSP-------ISRLKKTWNKIQS-GKFSILEHQM 150
+ F N+ LM+ I P I + + +N Q K+++ Q
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 151 DPSSNFSSYRSTLKAAMWRSAGATDERQRIVI---PFF--SLLVKDLYFLNEGCTNKLPN 205
+ R L R A + ++I + + + C +
Sbjct: 137 -----YLKLRQALLEL--RPA------KNVLIDGVLGSGKTWVA------LDVCLSYKVQ 177
Query: 206 GHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQS-----SPVLTENDE----DP 256
++F+ FW + K P + LQ P T +
Sbjct: 178 CKMDFKIFW---------LNLKNCNSP----ETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 257 HKTE 260
+
Sbjct: 225 LRIH 228
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 28.1 bits (62), Expect = 4.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 83 EVVKHVKKKQRVKVVEFWIEAARE--CFNIGNFNSLMAIIAGLNMSPISRLKK 133
E+V V+K+ R+K++ W+EA C N+L I N +P L++
Sbjct: 844 ELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRE 896
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 27.1 bits (59), Expect = 8.2
Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 9/111 (8%)
Query: 41 EFVQAF---AKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVVKHVKKKQRVKVV 97
+FVQ F KENP L+T + + + ++ +N + + T+ + + R
Sbjct: 299 QFVQHFYDYVKENPDLKTPYSVWAKKNKVNSWEPDYNGYIWRLDTKDRNQLPRNFRTMNS 358
Query: 98 EF--WIEAARECFNIGNFNSLMAI----IAGLNMSPISRLKKTWNKIQSGK 142
F + + + + ++G L+ ++
Sbjct: 359 AFRTDVNVKKTGKGFTPTPTRKGLDTLYMSGSAEFSNGELQAMLPVLKQQA 409
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.405
Gapped
Lambda K H
0.267 0.0506 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,981,495
Number of extensions: 222720
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 17
Length of query: 262
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,133,061
Effective search space: 702620370
Effective search space used: 702620370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)