RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3927
         (262 letters)



>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 481

 Score =  174 bits (442), Expect = 3e-52
 Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 24/246 (9%)

Query: 15  LCPTPNHIAQQLTHIELERLSFIGPEEFVQ-AFAKENPHLETSFKDMKRTRNLENYVQWF 73
           L   P  IA+QLT +E +    + P E V   + KE+            + NL   ++  
Sbjct: 212 LTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKE--------INSPNLLKMIRHT 263

Query: 74  NRLSYLVATEVVKHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSPISRLKK 133
             L+      +V+    ++RV VV   IE  +    + NFN ++ +++ +N SP+ RL  
Sbjct: 264 TNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDH 323

Query: 134 TWNKIQSGKFSILEH-QMDPSSNFSSYRSTLKAAMWRSAGATDERQRIVIPFFSLLVKDL 192
           T+ +I S +  ILE        ++  Y + L++                +PFF + + ++
Sbjct: 324 TFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSI-----------NPPCVPFFGIYLTNI 372

Query: 193 YFLNEGCTNKLP---NGHINFEKFWQLAKQVTEFITWKQVTCPFGKVNKTIMFLQSSPVL 249
               EG    L       INF K  ++A+   E   ++         +    F ++   +
Sbjct: 373 LKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQPYCLRVESDIKRFFENLNPM 432

Query: 250 TENDED 255
             + E 
Sbjct: 433 GNSMEK 438


>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 202

 Score = 31.8 bits (72), Expect = 0.051
 Identities = 12/102 (11%), Positives = 33/102 (32%), Gaps = 9/102 (8%)

Query: 26  LTHIELERLSFIGPEEFVQAFAKENPHLETSFKDMKRTRNLENYVQWFNRLSYLVATEVV 85
           +    + R          +   K+N  L  S + +  +   E        +         
Sbjct: 94  IISPWVNRKDPGIDHVLAKLMVKKNVALGFSLRPLLYSNPYER-ANLLRFMMKAWK---- 148

Query: 86  KHVKKKQRVKVVEFWIEAARECFNIGNFNSLMAIIAGLNMSP 127
             + +K +V+       +A+E +++     L+++   + M  
Sbjct: 149 --LVEKYKVRRF--LTSSAQEKWDVRYPRDLISLGVVIGMEI 186


>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
          typhimurium [TaxId: 90371]}
          Length = 417

 Score = 26.4 bits (58), Expect = 4.3
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 53 LETSFKDMKRT--RNLENYVQWFNRLSYLVATEVVKHVKKKQR 93
           + + + MK+     + +    F+RLS  +A  V +    K +
Sbjct: 12 PKAAIRQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQ 54


>d1dgna_ a.77.1.3 (A:) Iceberg {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 89

 Score = 24.8 bits (54), Expect = 4.8
 Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 11 DITELCPTPNHIAQQLTHIELERLSFIGPEEFVQAFAKENPHL 53
           + +   T    A+ L  + +         +F++   +E+P L
Sbjct: 41 KVRDENDTVMDKARVLIDL-VTGKGPKSCCKFIKHLCEEDPQL 82


>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens
           [TaxId: 34413]}
          Length = 210

 Score = 25.1 bits (55), Expect = 8.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 224 ITWKQVTCPFGKVNKT 239
            +++QV CP   V +T
Sbjct: 182 FSFRQVQCPAELVART 197


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 992,048
Number of extensions: 45213
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 5
Length of query: 262
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 178
Effective length of database: 1,254,276
Effective search space: 223261128
Effective search space used: 223261128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)