Query psy3928
Match_columns 115
No_of_seqs 102 out of 1384
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 20:57:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 3.6E-19 7.8E-24 110.9 11.8 85 9-93 31-115 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.2E-17 2.6E-22 116.9 10.0 81 12-92 269-349 (352)
3 PF00076 RRM_1: RNA recognitio 99.7 3.6E-17 7.8E-22 89.6 8.3 70 15-85 1-70 (70)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 3.3E-17 7.1E-22 114.7 9.8 81 11-91 2-82 (352)
5 TIGR01659 sex-lethal sex-letha 99.7 6.3E-17 1.4E-21 113.2 10.4 84 8-91 103-186 (346)
6 KOG0121|consensus 99.7 1.5E-16 3.3E-21 95.3 6.8 80 9-88 33-112 (153)
7 KOG0122|consensus 99.7 4.5E-16 9.9E-21 102.1 8.8 85 8-92 185-269 (270)
8 PF14259 RRM_6: RNA recognitio 99.7 9.6E-16 2.1E-20 84.3 8.2 69 15-84 1-69 (70)
9 TIGR01659 sex-lethal sex-letha 99.7 2.5E-15 5.5E-20 105.2 11.4 81 11-91 192-274 (346)
10 KOG0117|consensus 99.7 1.3E-15 2.9E-20 107.0 9.7 94 10-103 81-177 (506)
11 TIGR01645 half-pint poly-U bin 99.6 2E-15 4.3E-20 111.5 11.0 81 11-91 203-283 (612)
12 KOG0113|consensus 99.6 1.7E-15 3.8E-20 101.8 9.7 84 9-92 98-181 (335)
13 KOG0149|consensus 99.6 9.5E-16 2.1E-20 100.1 7.3 77 8-85 8-84 (247)
14 TIGR01645 half-pint poly-U bin 99.6 1.6E-15 3.5E-20 111.9 8.9 79 10-88 105-183 (612)
15 KOG0125|consensus 99.6 1.7E-15 3.7E-20 103.0 8.3 98 8-107 92-189 (376)
16 KOG0107|consensus 99.6 1.9E-15 4E-20 94.9 7.8 77 11-92 9-85 (195)
17 PLN03120 nucleic acid binding 99.6 2E-14 4.4E-19 96.1 10.0 76 11-90 3-78 (260)
18 KOG4207|consensus 99.6 6.5E-15 1.4E-19 94.8 7.1 84 8-91 9-92 (256)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.6 2.6E-14 5.7E-19 104.4 11.1 81 11-91 294-374 (509)
20 TIGR01628 PABP-1234 polyadenyl 99.6 1.3E-14 2.8E-19 107.3 9.6 76 14-89 2-77 (562)
21 TIGR01622 SF-CC1 splicing fact 99.6 3.3E-14 7.1E-19 102.8 9.9 79 12-90 186-264 (457)
22 PLN03213 repressor of silencin 99.6 2.5E-14 5.5E-19 102.2 8.9 79 9-91 7-87 (759)
23 smart00362 RRM_2 RNA recogniti 99.6 5.9E-14 1.3E-18 76.3 8.2 71 14-86 1-71 (72)
24 KOG0111|consensus 99.5 6.5E-15 1.4E-19 95.7 4.5 98 10-107 8-106 (298)
25 KOG0126|consensus 99.5 6.4E-16 1.4E-20 97.6 -0.6 81 11-91 34-114 (219)
26 TIGR01648 hnRNP-R-Q heterogene 99.5 5.2E-14 1.1E-18 103.7 9.2 73 11-84 57-130 (578)
27 KOG0144|consensus 99.5 2.8E-14 6E-19 100.2 7.3 73 8-80 30-102 (510)
28 TIGR01622 SF-CC1 splicing fact 99.5 7.5E-14 1.6E-18 100.9 9.9 79 10-89 87-165 (457)
29 TIGR01628 PABP-1234 polyadenyl 99.5 9.8E-14 2.1E-18 102.7 10.2 82 9-91 282-363 (562)
30 smart00360 RRM RNA recognition 99.5 1.7E-13 3.6E-18 74.2 8.1 70 17-86 1-70 (71)
31 PLN03121 nucleic acid binding 99.5 2.5E-13 5.4E-18 89.8 9.7 77 10-90 3-79 (243)
32 KOG0130|consensus 99.5 1.4E-13 2.9E-18 83.4 7.7 82 10-91 70-151 (170)
33 KOG0131|consensus 99.5 4.9E-14 1.1E-18 89.1 5.7 83 8-90 5-87 (203)
34 COG0724 RNA-binding proteins ( 99.5 2.8E-13 6.1E-18 90.4 9.2 79 12-90 115-193 (306)
35 KOG0105|consensus 99.5 1.8E-13 4E-18 86.9 7.7 79 10-91 4-82 (241)
36 TIGR01648 hnRNP-R-Q heterogene 99.5 4.4E-13 9.6E-18 98.9 10.1 76 11-94 232-309 (578)
37 KOG0117|consensus 99.5 1.8E-13 3.9E-18 96.4 6.6 80 5-92 252-331 (506)
38 KOG0114|consensus 99.5 9.6E-13 2.1E-17 76.4 8.4 78 11-91 17-94 (124)
39 KOG0145|consensus 99.5 3.9E-13 8.4E-18 89.5 7.6 83 9-91 38-120 (360)
40 KOG0108|consensus 99.4 4.4E-13 9.5E-18 95.8 8.1 80 13-92 19-98 (435)
41 KOG0148|consensus 99.4 1E-12 2.2E-17 87.7 9.2 81 3-89 155-235 (321)
42 cd00590 RRM RRM (RNA recogniti 99.4 2.2E-12 4.8E-17 70.3 9.2 72 14-86 1-72 (74)
43 KOG0148|consensus 99.4 3.9E-13 8.5E-18 89.7 6.4 77 13-89 63-139 (321)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.5E-12 3.3E-17 95.0 9.9 77 10-91 273-350 (481)
45 KOG0144|consensus 99.4 3.9E-13 8.4E-18 94.5 4.7 68 11-79 123-190 (510)
46 KOG0146|consensus 99.4 1.6E-12 3.5E-17 86.8 5.8 83 5-88 11-94 (371)
47 KOG0109|consensus 99.4 1.1E-12 2.4E-17 88.3 4.9 72 13-92 3-74 (346)
48 smart00361 RRM_1 RNA recogniti 99.3 9.4E-12 2E-16 68.5 7.1 61 26-86 2-69 (70)
49 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.3E-11 2.9E-16 90.0 9.9 79 12-92 394-480 (481)
50 KOG0124|consensus 99.3 1.5E-12 3.3E-17 90.3 4.6 75 13-87 114-188 (544)
51 KOG0145|consensus 99.3 1.7E-11 3.7E-16 81.8 8.9 82 10-91 276-357 (360)
52 KOG0127|consensus 99.3 9.9E-12 2.1E-16 89.8 8.1 87 7-93 287-379 (678)
53 KOG0127|consensus 99.3 6.6E-12 1.4E-16 90.6 6.9 85 10-94 3-87 (678)
54 KOG4208|consensus 99.3 1.6E-11 3.5E-16 79.1 7.7 80 10-89 47-127 (214)
55 KOG0146|consensus 99.3 6E-12 1.3E-16 84.2 5.1 86 8-93 281-366 (371)
56 KOG0147|consensus 99.3 1.1E-11 2.3E-16 89.3 6.4 82 14-95 280-361 (549)
57 PF13893 RRM_5: RNA recognitio 99.2 9.3E-11 2E-15 61.7 6.3 55 29-88 1-55 (56)
58 TIGR01642 U2AF_lg U2 snRNP aux 99.2 7.4E-11 1.6E-15 86.4 7.5 74 8-88 171-256 (509)
59 KOG0131|consensus 99.2 8.3E-11 1.8E-15 74.6 6.5 86 10-95 94-180 (203)
60 KOG0415|consensus 99.2 5.2E-11 1.1E-15 82.3 6.1 83 9-91 236-318 (479)
61 KOG1457|consensus 99.2 3.2E-10 7E-15 74.2 8.5 81 8-88 30-111 (284)
62 KOG0124|consensus 99.2 1.7E-10 3.7E-15 80.2 7.4 80 11-90 209-288 (544)
63 KOG4212|consensus 99.1 2.1E-10 4.7E-15 81.2 7.8 76 12-88 44-120 (608)
64 KOG0123|consensus 99.1 3.5E-10 7.7E-15 80.0 8.8 76 13-91 77-152 (369)
65 KOG0533|consensus 99.1 5.3E-10 1.1E-14 74.7 9.1 83 8-91 79-161 (243)
66 KOG4206|consensus 99.1 5.8E-10 1.3E-14 72.8 8.0 77 13-92 10-90 (221)
67 KOG4205|consensus 99.1 2E-10 4.3E-15 79.3 5.1 85 11-96 5-89 (311)
68 KOG0123|consensus 99.0 1.8E-09 4E-14 76.4 7.7 71 13-89 2-72 (369)
69 KOG0109|consensus 99.0 9.6E-10 2.1E-14 74.4 5.4 78 11-96 77-154 (346)
70 KOG4661|consensus 99.0 2.3E-09 4.9E-14 78.4 6.9 81 11-91 404-484 (940)
71 KOG4205|consensus 99.0 1.4E-09 3E-14 75.2 5.5 83 12-95 97-179 (311)
72 KOG4660|consensus 99.0 6.9E-10 1.5E-14 80.3 3.9 74 7-85 70-143 (549)
73 KOG0132|consensus 98.9 3.9E-09 8.4E-14 79.1 7.1 70 12-87 421-490 (894)
74 KOG0153|consensus 98.8 1.2E-08 2.7E-13 70.4 6.8 76 6-87 222-298 (377)
75 PF04059 RRM_2: RNA recognitio 98.8 7.1E-08 1.5E-12 56.1 9.0 70 13-82 2-73 (97)
76 KOG4212|consensus 98.8 1.5E-08 3.2E-13 72.1 7.1 74 10-88 534-607 (608)
77 KOG4209|consensus 98.8 2.3E-08 4.9E-13 66.7 7.6 84 8-92 97-180 (231)
78 KOG1548|consensus 98.8 3.9E-08 8.5E-13 68.0 8.3 85 12-97 134-226 (382)
79 KOG0116|consensus 98.8 3.7E-08 8.1E-13 70.5 8.1 80 11-91 287-366 (419)
80 KOG0110|consensus 98.8 3.8E-08 8.2E-13 73.2 7.7 78 13-90 516-596 (725)
81 KOG0226|consensus 98.7 1.8E-08 3.9E-13 67.1 4.1 83 9-91 187-269 (290)
82 KOG0151|consensus 98.7 4.5E-08 9.7E-13 73.1 6.1 81 9-89 171-254 (877)
83 KOG0110|consensus 98.7 2.5E-08 5.5E-13 74.1 4.7 79 12-90 613-691 (725)
84 KOG4211|consensus 98.6 2.7E-07 5.8E-12 66.4 8.5 80 8-91 6-85 (510)
85 KOG0106|consensus 98.6 1E-07 2.2E-12 62.7 4.6 70 13-90 2-71 (216)
86 KOG4454|consensus 98.5 5.2E-08 1.1E-12 63.8 2.2 73 11-85 8-80 (267)
87 KOG0120|consensus 98.5 1.3E-07 2.8E-12 68.8 4.1 81 11-91 288-368 (500)
88 KOG3152|consensus 98.2 1.8E-06 3.9E-11 57.8 4.2 75 11-85 73-159 (278)
89 KOG1457|consensus 98.2 1.9E-06 4.1E-11 56.8 4.1 64 13-80 211-274 (284)
90 KOG2314|consensus 98.2 1.1E-05 2.4E-10 59.3 7.2 71 11-82 57-133 (698)
91 KOG1995|consensus 98.1 5.4E-06 1.2E-10 57.8 5.3 86 8-93 62-155 (351)
92 PF11608 Limkain-b1: Limkain b 98.1 5.3E-05 1.1E-09 42.7 7.2 69 13-91 3-76 (90)
93 KOG4211|consensus 98.1 1.7E-05 3.6E-10 57.4 6.4 77 11-89 102-179 (510)
94 KOG0147|consensus 98.0 1.7E-06 3.6E-11 63.1 1.3 78 10-88 177-254 (549)
95 KOG4206|consensus 98.0 3.2E-05 7E-10 50.9 6.8 67 9-80 143-209 (221)
96 KOG1190|consensus 98.0 5E-05 1.1E-09 54.1 7.6 75 12-91 297-372 (492)
97 KOG4849|consensus 97.9 2.1E-05 4.6E-10 55.0 4.1 76 11-86 79-156 (498)
98 KOG4307|consensus 97.9 0.0001 2.2E-09 55.8 7.8 83 4-87 858-942 (944)
99 PF08777 RRM_3: RNA binding mo 97.8 0.00013 2.9E-09 43.1 6.2 59 13-77 2-60 (105)
100 KOG0129|consensus 97.7 0.00022 4.8E-09 52.0 6.8 65 8-72 366-431 (520)
101 KOG4210|consensus 97.6 6.3E-05 1.4E-09 51.9 3.8 80 13-93 185-265 (285)
102 KOG0129|consensus 97.6 0.00019 4.1E-09 52.4 6.3 65 11-76 258-328 (520)
103 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00034 7.4E-09 36.2 5.5 52 13-71 2-53 (53)
104 KOG0105|consensus 97.6 0.0018 3.9E-08 41.9 9.2 67 8-81 111-177 (241)
105 KOG0106|consensus 97.6 6.7E-05 1.5E-09 49.6 2.8 68 11-86 98-165 (216)
106 COG5175 MOT2 Transcriptional r 97.5 0.00049 1.1E-08 48.2 6.6 78 12-89 114-200 (480)
107 KOG1855|consensus 97.5 0.00018 3.9E-09 51.6 4.5 68 10-77 229-309 (484)
108 KOG1365|consensus 97.3 0.00031 6.7E-09 49.9 3.9 76 13-89 281-359 (508)
109 KOG1190|consensus 97.3 0.0011 2.4E-08 47.5 6.5 75 11-90 413-489 (492)
110 PF07576 BRAP2: BRCA1-associat 97.1 0.018 3.8E-07 34.4 9.5 76 14-91 15-94 (110)
111 KOG1456|consensus 97.1 0.0056 1.2E-07 43.6 8.1 77 9-90 284-361 (494)
112 KOG1365|consensus 97.1 0.0036 7.7E-08 44.7 6.9 63 12-75 161-227 (508)
113 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0037 8E-08 36.6 5.5 71 11-83 5-82 (100)
114 PF10309 DUF2414: Protein of u 96.9 0.014 3E-07 31.2 6.7 56 11-74 4-62 (62)
115 KOG0120|consensus 96.9 0.0055 1.2E-07 45.3 6.8 60 29-88 426-488 (500)
116 KOG1548|consensus 96.8 0.0077 1.7E-07 42.4 6.6 74 11-88 264-348 (382)
117 PF08952 DUF1866: Domain of un 96.7 0.0064 1.4E-07 37.9 5.5 80 3-91 18-106 (146)
118 PF08675 RNA_bind: RNA binding 96.7 0.018 3.9E-07 32.6 6.4 56 12-76 9-64 (87)
119 KOG0128|consensus 96.6 0.0011 2.3E-08 51.2 1.5 76 12-88 736-811 (881)
120 PF03467 Smg4_UPF3: Smg-4/UPF3 96.5 0.0055 1.2E-07 39.5 4.1 75 10-84 5-85 (176)
121 KOG0115|consensus 96.4 0.0055 1.2E-07 41.5 4.0 65 13-78 32-96 (275)
122 KOG4676|consensus 96.3 0.0098 2.1E-07 42.6 4.8 75 11-86 6-83 (479)
123 KOG0128|consensus 96.1 0.00014 3.1E-09 55.8 -5.1 67 11-77 666-732 (881)
124 KOG0112|consensus 96.1 0.0015 3.3E-08 50.7 0.2 80 9-89 369-448 (975)
125 KOG0112|consensus 95.7 0.022 4.8E-07 44.7 4.8 73 11-89 454-528 (975)
126 KOG0804|consensus 95.7 0.11 2.3E-06 38.1 7.9 69 12-82 74-143 (493)
127 KOG2202|consensus 95.4 0.012 2.6E-07 39.8 2.2 60 29-89 85-145 (260)
128 KOG4307|consensus 95.2 0.016 3.4E-07 44.5 2.5 79 9-88 431-510 (944)
129 KOG2416|consensus 95.2 0.027 5.9E-07 42.4 3.6 74 10-89 442-519 (718)
130 KOG1456|consensus 95.1 0.13 2.9E-06 36.9 6.6 73 9-83 403-476 (494)
131 KOG1996|consensus 94.5 0.2 4.2E-06 35.0 6.1 62 27-88 301-363 (378)
132 KOG4660|consensus 94.2 0.099 2.1E-06 39.0 4.4 70 13-82 389-459 (549)
133 KOG2068|consensus 93.9 0.023 5E-07 39.8 0.7 73 13-85 78-156 (327)
134 KOG2193|consensus 93.2 0.13 2.9E-06 37.5 3.5 67 13-87 2-71 (584)
135 PF15023 DUF4523: Protein of u 92.9 1.2 2.6E-05 27.9 7.0 61 10-77 84-148 (166)
136 PF04847 Calcipressin: Calcipr 92.3 0.35 7.6E-06 31.5 4.4 59 26-90 9-69 (184)
137 KOG4210|consensus 92.1 0.17 3.6E-06 35.2 2.9 73 11-83 87-159 (285)
138 KOG4285|consensus 91.5 1.3 2.9E-05 31.0 6.6 63 12-82 197-259 (350)
139 PF03880 DbpA: DbpA RNA bindin 90.8 1.7 3.6E-05 23.8 6.9 58 22-88 11-73 (74)
140 KOG2253|consensus 90.8 0.27 5.8E-06 37.6 2.9 68 8-84 36-103 (668)
141 KOG4483|consensus 88.7 1.6 3.5E-05 31.9 5.4 58 9-73 388-446 (528)
142 KOG2591|consensus 87.6 2.6 5.6E-05 32.1 6.0 59 11-76 174-234 (684)
143 KOG4410|consensus 87.5 2.1 4.5E-05 29.9 5.2 46 13-64 331-377 (396)
144 KOG2318|consensus 86.7 10 0.00022 29.2 8.7 76 9-84 171-298 (650)
145 KOG4574|consensus 85.7 0.87 1.9E-05 36.1 2.9 76 14-95 300-377 (1007)
146 smart00596 PRE_C2HC PRE_C2HC d 81.9 3 6.4E-05 22.7 3.2 61 27-90 2-63 (69)
147 KOG4019|consensus 80.7 5 0.00011 26.2 4.4 73 11-89 9-87 (193)
148 KOG4676|consensus 76.5 0.5 1.1E-05 34.2 -1.0 57 13-73 152-208 (479)
149 KOG2135|consensus 74.0 2.1 4.6E-05 31.8 1.6 66 18-90 378-444 (526)
150 PF03468 XS: XS domain; Inter 70.7 20 0.00044 21.5 5.6 46 24-72 29-75 (116)
151 PF11767 SET_assoc: Histone ly 70.5 15 0.00032 19.8 5.9 48 24-80 12-59 (66)
152 PF07530 PRE_C2HC: Associated 64.7 17 0.00038 19.6 3.6 60 27-89 2-62 (68)
153 KOG4454|consensus 63.8 1.9 4.1E-05 29.0 -0.4 70 8-78 76-149 (267)
154 KOG2891|consensus 63.3 11 0.00025 26.4 3.3 35 11-45 148-194 (445)
155 COG3214 Uncharacterized protei 62.5 2.9 6.2E-05 30.1 0.3 15 99-113 146-160 (400)
156 PF15513 DUF4651: Domain of un 60.5 25 0.00053 18.8 4.0 18 27-44 9-26 (62)
157 COG0724 RNA-binding proteins ( 57.2 20 0.00043 23.4 3.6 41 8-48 221-261 (306)
158 PF07292 NID: Nmi/IFP 35 domai 56.2 8 0.00017 22.1 1.4 26 9-34 49-74 (88)
159 KOG2193|consensus 56.2 0.44 9.6E-06 34.9 -4.6 74 13-89 81-154 (584)
160 KOG2295|consensus 50.8 1.8 3.9E-05 32.8 -2.3 70 12-81 231-300 (648)
161 PF09707 Cas_Cas2CT1978: CRISP 49.9 39 0.00084 19.2 3.5 45 14-61 27-71 (86)
162 PF02714 DUF221: Domain of unk 48.2 30 0.00065 24.2 3.5 22 57-78 1-22 (325)
163 PF03439 Spt5-NGN: Early trans 45.6 29 0.00063 19.4 2.6 26 52-77 42-67 (84)
164 PRK11558 putative ssRNA endonu 35.4 70 0.0015 18.7 3.1 46 14-63 29-75 (97)
165 PF10567 Nab6_mRNP_bdg: RNA-re 35.2 1.3E+02 0.0028 21.4 4.8 57 12-68 15-78 (309)
166 PF11823 DUF3343: Protein of u 33.5 65 0.0014 17.3 2.7 24 56-79 3-26 (73)
167 KOG1295|consensus 29.4 79 0.0017 23.2 3.2 71 11-81 6-79 (376)
168 KOG4008|consensus 27.4 68 0.0015 22.0 2.4 32 10-41 38-69 (261)
169 smart00186 FBG Fibrinogen-rela 27.1 27 0.00059 23.3 0.5 12 103-114 162-173 (212)
170 PRK14548 50S ribosomal protein 25.8 1.4E+02 0.0029 16.9 5.3 58 14-74 22-81 (84)
171 KOG2579|consensus 24.6 28 0.0006 25.0 0.2 13 102-114 279-291 (338)
172 cd00087 FReD Fibrinogen-relate 24.4 28 0.0006 23.3 0.2 12 103-114 162-173 (215)
173 COG0030 KsgA Dimethyladenosine 24.1 1.5E+02 0.0032 20.6 3.6 27 13-39 96-122 (259)
174 PRK10905 cell division protein 23.7 2.9E+02 0.0063 20.0 5.3 61 13-77 248-309 (328)
175 TIGR02542 B_forsyth_147 Bacter 23.3 82 0.0018 19.2 2.0 44 21-64 83-129 (145)
176 cd00027 BRCT Breast Cancer Sup 23.1 1.1E+02 0.0024 14.9 3.4 27 13-39 2-28 (72)
177 PRK11634 ATP-dependent RNA hel 23.1 2.3E+02 0.0049 22.3 4.8 60 22-90 497-561 (629)
178 PF15407 Spo7_2_N: Sporulation 22.7 31 0.00067 18.6 0.2 18 11-28 26-43 (67)
179 PF12623 Hen1_L: RNA repair, l 22.3 2.7E+02 0.0058 19.2 4.4 61 12-73 118-182 (245)
180 TIGR03636 L23_arch archaeal ri 22.1 1.6E+02 0.0034 16.3 5.4 58 14-74 15-74 (77)
181 PF00147 Fibrinogen_C: Fibrino 21.8 39 0.00085 22.9 0.5 10 104-113 177-186 (235)
182 PF00398 RrnaAD: Ribosomal RNA 21.6 1E+02 0.0022 21.0 2.5 23 12-34 97-119 (262)
183 PF15063 TC1: Thyroid cancer p 21.3 59 0.0013 18.1 1.1 28 13-40 26-53 (79)
184 TIGR01873 cas_CT1978 CRISPR-as 20.9 1.6E+02 0.0035 16.8 2.8 46 14-63 27-74 (87)
185 PF02946 GTF2I: GTF2I-like rep 20.9 1.1E+02 0.0023 17.1 2.0 32 11-42 33-72 (76)
186 PHA01632 hypothetical protein 20.8 1.3E+02 0.0029 15.6 2.2 19 17-35 21-39 (64)
187 PF11411 DNA_ligase_IV: DNA li 20.8 85 0.0018 14.8 1.4 16 22-37 19-34 (36)
188 KOG0156|consensus 20.7 3.7E+02 0.008 20.5 5.5 58 16-83 36-96 (489)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=3.6e-19 Score=110.86 Aligned_cols=85 Identities=18% Similarity=0.247 Sum_probs=78.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||..+++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|+.|++.|++..++++.+.|..
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34467899999999999999999999999999999999988999999999999999999999999999999999999887
Q ss_pred eeecc
Q psy3928 89 TTSRL 93 (115)
Q Consensus 89 ~~~~~ 93 (115)
++.+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 76543
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.75 E-value=1.2e-17 Score=116.91 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=77.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeee
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTS 91 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~ 91 (115)
+..|||+|||..+++++|+++|++||.|..++++.++.++.++|||||+|.+.++|..|+..|||..++|+.++|..++.
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 44799999999999999999999999999999999998999999999999999999999999999999999999998876
Q ss_pred c
Q psy3928 92 R 92 (115)
Q Consensus 92 ~ 92 (115)
+
T Consensus 349 ~ 349 (352)
T TIGR01661 349 K 349 (352)
T ss_pred C
Confidence 4
No 3
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.73 E-value=3.6e-17 Score=89.61 Aligned_cols=70 Identities=33% Similarity=0.534 Sum_probs=65.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceee
Q psy3928 15 VLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSS 85 (115)
Q Consensus 15 l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~ 85 (115)
|||+|||.++++.+|+++|.+||.+..+.+..+ .++..+++|||+|.+.++|++|++.+++..+.+..++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999998887 4889999999999999999999999999998888764
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.73 E-value=3.3e-17 Score=114.70 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
...+|||+|||..+++++|+++|..||.|..++|+.++.+|+++|||||+|.+.++|++|+..|++..+.|+.+.+....
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999887665
Q ss_pred e
Q psy3928 91 S 91 (115)
Q Consensus 91 ~ 91 (115)
+
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 4
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=6.3e-17 Score=113.23 Aligned_cols=84 Identities=15% Similarity=0.265 Sum_probs=77.4
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||++||.++++++|+++|..||.|..++|+.++.+++++|||||+|.++++|++|++.|++..+.++.+.+.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34467899999999999999999999999999999999998899999999999999999999999999999999998887
Q ss_pred Eeee
Q psy3928 88 TTTS 91 (115)
Q Consensus 88 ~~~~ 91 (115)
.+++
T Consensus 183 ~a~p 186 (346)
T TIGR01659 183 YARP 186 (346)
T ss_pred cccc
Confidence 6543
No 6
>KOG0121|consensus
Probab=99.68 E-value=1.5e-16 Score=95.27 Aligned_cols=80 Identities=21% Similarity=0.204 Sum_probs=74.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++||||||+..++|+.|.++|..+|.|+.+.|-.++.+-.++|||||+|.+.++|..|++.+++..++.+.|++..
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 44678999999999999999999999999999999999998888999999999999999999999999999999887654
No 7
>KOG0122|consensus
Probab=99.67 E-value=4.5e-16 Score=102.08 Aligned_cols=85 Identities=25% Similarity=0.335 Sum_probs=78.2
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.+++..+|-|.||+.+++|.+|+++|.+||.+..+.+.+++.+|.++|||||.|.+.++|++|+..|||+-++.--+++.
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 45567889999999999999999999999999999999999999999999999999999999999999998888877777
Q ss_pred Eeeec
Q psy3928 88 TTTSR 92 (115)
Q Consensus 88 ~~~~~ 92 (115)
-.+|+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 66654
No 8
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=9.6e-16 Score=84.27 Aligned_cols=69 Identities=39% Similarity=0.580 Sum_probs=62.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCcee
Q psy3928 15 VLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQS 84 (115)
Q Consensus 15 l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~ 84 (115)
|||+|||+++++++|+++|..+|.+..+.+..++. +..+++|||+|.+.++|.+|++.+++..++|+.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEc
Confidence 79999999999999999999999999999998875 8999999999999999999999999888888765
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.65 E-value=2.5e-15 Score=105.23 Aligned_cols=81 Identities=26% Similarity=0.415 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCC--ceeeEEE
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTD--YQSSILT 88 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~--~~~~v~~ 88 (115)
...+|||+|||..+++++|+++|.+||.|..+.++.++.+++++++|||+|.+.++|++|++.||+..+.+ ..+.|..
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998899999999999999999999999999998876 4666665
Q ss_pred eee
Q psy3928 89 TTS 91 (115)
Q Consensus 89 ~~~ 91 (115)
++.
T Consensus 272 a~~ 274 (346)
T TIGR01659 272 AEE 274 (346)
T ss_pred CCc
Confidence 554
No 10
>KOG0117|consensus
Probab=99.65 E-value=1.3e-15 Score=106.97 Aligned_cols=94 Identities=29% Similarity=0.315 Sum_probs=84.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCC-ceeeEE-
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTD-YQSSIL- 87 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~-~~~~v~- 87 (115)
..++.||||.||.++.|++|.-+|.+.|.|..++|++++.+|.++|||||.|++.+.|+.|++.||++.|.. +.|.+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 346899999999999999999999999999999999999999999999999999999999999999997754 555554
Q ss_pred -EeeeccccCCCCCCCC
Q psy3928 88 -TTTSRLSFGITPLGFE 103 (115)
Q Consensus 88 -~~~~~~~~~~~~~~~~ 103 (115)
.+..|.+.|+.|+.+.
T Consensus 161 Svan~RLFiG~IPK~k~ 177 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKK 177 (506)
T ss_pred eeecceeEeccCCcccc
Confidence 4567899999998764
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.65 E-value=2e-15 Score=111.47 Aligned_cols=81 Identities=15% Similarity=0.198 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..++|||+|||.++++++|+++|+.||.+..+++.+++.+++++|||||+|.+.++|.+|+..||+..++|+.++|....
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 34789999999999999999999999999999999998889999999999999999999999999999999999988766
Q ss_pred e
Q psy3928 91 S 91 (115)
Q Consensus 91 ~ 91 (115)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 12
>KOG0113|consensus
Probab=99.65 E-value=1.7e-15 Score=101.80 Aligned_cols=84 Identities=20% Similarity=0.288 Sum_probs=77.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
.+..++|||+-|+.+++|..|+..|..||.|+.+.|+.++.+|+++|||||+|..+.+...|.+..+|..|+++.|-|..
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred eeec
Q psy3928 89 TTSR 92 (115)
Q Consensus 89 ~~~~ 92 (115)
-..+
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 5443
No 13
>KOG0149|consensus
Probab=99.64 E-value=9.5e-16 Score=100.08 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=68.8
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceee
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSS 85 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~ 85 (115)
.|..-.+||||+|++.+..+.|+++|++||+|.+..++.|+.+|+++||+||.|.+.+.|.+|++..+ -.|+|++-.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aN 84 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKAN 84 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccc
Confidence 34556799999999999999999999999999999999999999999999999999999999999655 467887543
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.63 E-value=1.6e-15 Score=111.93 Aligned_cols=79 Identities=27% Similarity=0.283 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
...++|||+|||..+++++|+++|.+||.|..+.++.++.+++++|||||+|.+.++|+.|++.|||..+.|+.+++..
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 4567999999999999999999999999999999999998999999999999999999999999999999999888764
No 15
>KOG0125|consensus
Probab=99.63 E-value=1.7e-15 Score=102.98 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=85.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
..+..++|+|+|+|....+-+|+.+|.+||.|..|.|+.+ ...++||+||+|++.++|++|-.+|||..+.|++|.|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 3456789999999999999999999999999999999987 46678999999999999999999999999999999999
Q ss_pred EeeeccccCCCCCCCCCcce
Q psy3928 88 TTTSRLSFGITPLGFESGGW 107 (115)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~g~ 107 (115)
.++.|+......-.....||
T Consensus 170 ~ATarV~n~K~~v~p~~~g~ 189 (376)
T KOG0125|consen 170 NATARVHNKKKKVLPYPNGW 189 (376)
T ss_pred ccchhhccCCcccCCCcccc
Confidence 99988765444444444555
No 16
>KOG0107|consensus
Probab=99.63 E-value=1.9e-15 Score=94.92 Aligned_cols=77 Identities=27% Similarity=0.298 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
-.++||||||+..+++.+|...|..||.+..+.|-.+ +.|||||+|.++.+|+.|+..|+|..+.|..++|...+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3689999999999999999999999999999887554 47899999999999999999999999999999998876
Q ss_pred ec
Q psy3928 91 SR 92 (115)
Q Consensus 91 ~~ 92 (115)
.+
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 54
No 17
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=2e-14 Score=96.12 Aligned_cols=76 Identities=22% Similarity=0.234 Sum_probs=68.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..++|||+|||+.+++++|+++|+.||.|..+.|+.++ .++|||||+|.+++.|+.|+. |++..+.|+.+.|....
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 35799999999999999999999999999999998764 356899999999999999995 99999999999887765
No 18
>KOG4207|consensus
Probab=99.58 E-value=6.5e-15 Score=94.81 Aligned_cols=84 Identities=25% Similarity=0.335 Sum_probs=78.1
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
+.+....|-|-||...++.++|+.+|++||.|-.|.|++++.++.++|||||.|....+|+.|+++|+|..++|+.++|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 34455789999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Eeee
Q psy3928 88 TTTS 91 (115)
Q Consensus 88 ~~~~ 91 (115)
.++.
T Consensus 89 ~ary 92 (256)
T KOG4207|consen 89 MARY 92 (256)
T ss_pred hhhc
Confidence 7764
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.58 E-value=2.6e-14 Score=104.39 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=75.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
...+|||+|||..+++++|+++|..||.+..+.++.++.+|.++|||||+|.+.+.|..|+..|++..+.+..+.|..+.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999999999888889999999999999999999999999999999998887765
Q ss_pred e
Q psy3928 91 S 91 (115)
Q Consensus 91 ~ 91 (115)
.
T Consensus 374 ~ 374 (509)
T TIGR01642 374 V 374 (509)
T ss_pred c
Confidence 3
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.58 E-value=1.3e-14 Score=107.27 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=72.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 14 VVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 14 ~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
+|||+|||.++++++|+++|..||.|..+++.+++.+++++|||||+|.+.++|++|+..+++..+.|+.+++...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 6999999999999999999999999999999999888999999999999999999999999999999999888654
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.56 E-value=3.3e-14 Score=102.76 Aligned_cols=79 Identities=23% Similarity=0.278 Sum_probs=74.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..+|||+|||..+++++|+++|..||.|..+.+..++.+|.++|||||+|.+.++|..|+..|+|..+.|..+.|..+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 5799999999999999999999999999999999998888999999999999999999999999999999999888754
No 22
>PLN03213 repressor of silencing 3; Provisional
Probab=99.56 E-value=2.5e-14 Score=102.16 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=71.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCH--HHHHHHHHhhCCCCCCCceeeE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTK--EEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~--~~a~~al~~l~~~~~~~~~~~v 86 (115)
.....+||||||++.+++++|...|..||.|..+.|++ .+| +|||||+|... .++.+|+..|||..++|+.++|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34557999999999999999999999999999999984 466 89999999977 7899999999999999999999
Q ss_pred EEeee
Q psy3928 87 LTTTS 91 (115)
Q Consensus 87 ~~~~~ 91 (115)
..+++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 88876
No 23
>smart00362 RRM_2 RNA recognition motif.
Probab=99.55 E-value=5.9e-14 Score=76.27 Aligned_cols=71 Identities=35% Similarity=0.581 Sum_probs=63.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 14 VVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 14 ~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
+|||+|||..++..+|+++|..||.+..+.+..++ +.+++++||+|.+.+.|+.|+..+++..+.+..+.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 48999999999999999999999999999887765 678899999999999999999999998887776553
No 24
>KOG0111|consensus
Probab=99.54 E-value=6.5e-15 Score=95.72 Aligned_cols=98 Identities=18% Similarity=0.308 Sum_probs=86.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++||||+|...+++.-|..-|-+||.|..++++.+..+++.+||+||+|...++|.+|+..||+..+-|+.|+|-.+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ee-ccccCCCCCCCCCcce
Q psy3928 90 TS-RLSFGITPLGFESGGW 107 (115)
Q Consensus 90 ~~-~~~~~~~~~~~~~~g~ 107 (115)
+| +...+....-|....|
T Consensus 88 kP~kikegsqkPvWADDdW 106 (298)
T KOG0111|consen 88 KPEKIKEGSQKPVWADDDW 106 (298)
T ss_pred CCccccCCCCCCcccCcHH
Confidence 87 4444445555655555
No 25
>KOG0126|consensus
Probab=99.54 E-value=6.4e-16 Score=97.62 Aligned_cols=81 Identities=25% Similarity=0.279 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
+..=|||||||...+|.+|...|++||.+..+.+++++.||+++||||+.|.+..+.--|+..|||..+.|+.++|..+.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 44569999999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred e
Q psy3928 91 S 91 (115)
Q Consensus 91 ~ 91 (115)
.
T Consensus 114 ~ 114 (219)
T KOG0126|consen 114 N 114 (219)
T ss_pred c
Confidence 4
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=5.2e-14 Score=103.73 Aligned_cols=73 Identities=30% Similarity=0.335 Sum_probs=66.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCC-Ccee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPT-DYQS 84 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~-~~~~ 84 (115)
..++|||+|||.+++|++|.++|.++|.|..++|+++ .+++++|||||+|.+.++|++|++.||+..+. ++.+
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l 130 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL 130 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc
Confidence 4589999999999999999999999999999999998 59999999999999999999999999998875 4443
No 27
>KOG0144|consensus
Probab=99.53 E-value=2.8e-14 Score=100.15 Aligned_cols=73 Identities=30% Similarity=0.412 Sum_probs=67.7
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCC
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPT 80 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~ 80 (115)
.+.+.-++|||.+|+.++|.+|+.+|++||.|.+|.|++|+.++.++|||||.|.+..+|.+|+.+|++...-
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktl 102 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTL 102 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhccccc
Confidence 4555679999999999999999999999999999999999999999999999999999999999999987533
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.53 E-value=7.5e-14 Score=100.88 Aligned_cols=79 Identities=28% Similarity=0.275 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||..+++.+|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+. +++..+.|..+.+...
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 346799999999999999999999999999999999998899999999999999999999997 8999999988877654
No 29
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.53 E-value=9.8e-14 Score=102.66 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=75.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
.....+|||+||+..+++++|+++|..||.|..++++.+ .++.++|++||+|.+.++|.+|+..+|+..+.|+.+.|..
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 345678999999999999999999999999999999988 4899999999999999999999999999999999998876
Q ss_pred eee
Q psy3928 89 TTS 91 (115)
Q Consensus 89 ~~~ 91 (115)
+..
T Consensus 361 a~~ 363 (562)
T TIGR01628 361 AQR 363 (562)
T ss_pred ccC
Confidence 653
No 30
>smart00360 RRM RNA recognition motif.
Probab=99.52 E-value=1.7e-13 Score=74.19 Aligned_cols=70 Identities=40% Similarity=0.580 Sum_probs=63.6
Q ss_pred EcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 17 KEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 17 V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
|+|||..+++++|+++|++||.+..+.+..++.++.++++|||+|.+.+.|..|+..+++..+.+..+.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5799999999999999999999999998887767889999999999999999999999988888876654
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.51 E-value=2.5e-13 Score=89.76 Aligned_cols=77 Identities=21% Similarity=0.213 Sum_probs=67.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
..+.+|||+||++.+++++|+++|+.||.|..+.|+++ +...++|||+|.++..++.|+ .|+|..+.+..+.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 35689999999999999999999999999999999876 444579999999999999999 59999999998877654
Q ss_pred e
Q psy3928 90 T 90 (115)
Q Consensus 90 ~ 90 (115)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 3
No 32
>KOG0130|consensus
Probab=99.51 E-value=1.4e-13 Score=83.45 Aligned_cols=82 Identities=24% Similarity=0.313 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
..+.+|||.++....+|+++...|..||.|+.+.+-.++.+|..+||++|+|.+..+|++|+..+|+..+.+..+.|.-.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34679999999999999999999999999999999999889999999999999999999999999999999998887655
Q ss_pred ee
Q psy3928 90 TS 91 (115)
Q Consensus 90 ~~ 91 (115)
..
T Consensus 150 Fv 151 (170)
T KOG0130|consen 150 FV 151 (170)
T ss_pred Ee
Confidence 54
No 33
>KOG0131|consensus
Probab=99.50 E-value=4.9e-14 Score=89.06 Aligned_cols=83 Identities=19% Similarity=0.283 Sum_probs=77.6
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
+.....+|||+||+..+++..|.++|-+.|++..+.+++++-+...+||||++|.++++|+.|++.||...+-|++|++.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999989999999988
Q ss_pred Eee
Q psy3928 88 TTT 90 (115)
Q Consensus 88 ~~~ 90 (115)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 776
No 34
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.49 E-value=2.8e-13 Score=90.42 Aligned_cols=79 Identities=29% Similarity=0.432 Sum_probs=75.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..+|||+|||..+++++|+++|..||.+..+.+..++.++.++|+|||+|.+.+.|..|+..+++..+.|+.+.+....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999988899999999999999999999999999999999999988754
No 35
>KOG0105|consensus
Probab=99.49 E-value=1.8e-13 Score=86.94 Aligned_cols=79 Identities=23% Similarity=0.280 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...+.|||+|||.++.+.+|..+|-+||.|..+.+... -.+.+||||+|++..+|+.|+..-+++.+++..++|.+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35678999999999999999999999999999887443 234569999999999999999999999999999999987
Q ss_pred ee
Q psy3928 90 TS 91 (115)
Q Consensus 90 ~~ 91 (115)
..
T Consensus 81 rg 82 (241)
T KOG0105|consen 81 RG 82 (241)
T ss_pred cC
Confidence 64
No 36
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.48 E-value=4.4e-13 Score=98.88 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhc--CCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKY--GKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~--g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
..++|||+||+.++++++|+++|..| |.|..+.++ ++||||+|.+.++|++|++.||+..++++.+.|..
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45789999999999999999999999 999988764 35999999999999999999999999999999998
Q ss_pred eeeccc
Q psy3928 89 TTSRLS 94 (115)
Q Consensus 89 ~~~~~~ 94 (115)
++++..
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 877543
No 37
>KOG0117|consensus
Probab=99.46 E-value=1.8e-13 Score=96.42 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=72.0
Q ss_pred hhcccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCcee
Q psy3928 5 VENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQS 84 (115)
Q Consensus 5 ~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~ 84 (115)
+++.....+.|||.||+.+++++.|+++|+.||.+.+|+.++| ||||+|.+.++|-+|++.+|++.++|..+
T Consensus 252 ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~i 323 (506)
T KOG0117|consen 252 DEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPI 323 (506)
T ss_pred ChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceE
Confidence 3344556789999999999999999999999999999877654 99999999999999999999999999999
Q ss_pred eEEEeeec
Q psy3928 85 SILTTTSR 92 (115)
Q Consensus 85 ~v~~~~~~ 92 (115)
.+..++|.
T Consensus 324 EvtLAKP~ 331 (506)
T KOG0117|consen 324 EVTLAKPV 331 (506)
T ss_pred EEEecCCh
Confidence 99988874
No 38
>KOG0114|consensus
Probab=99.45 E-value=9.6e-13 Score=76.39 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
-.+.|||.|||..++.++..++|..||.|..+++-.. ...+|-|||.|++..+|.+|++.|.|..+++..+.++.-.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 3578999999999999999999999999999998654 4567899999999999999999999999999998888765
Q ss_pred e
Q psy3928 91 S 91 (115)
Q Consensus 91 ~ 91 (115)
+
T Consensus 94 ~ 94 (124)
T KOG0114|consen 94 P 94 (124)
T ss_pred H
Confidence 4
No 39
>KOG0145|consensus
Probab=99.45 E-value=3.9e-13 Score=89.50 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=75.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
++....+.|.-||..+++++++.+|.+.|+|..|++++|+.+|.+.||+||.|.++.+|++|+..|||..+-.+.|.|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44556899999999999999999999999999999999999999999999999999999999999999877777777776
Q ss_pred eee
Q psy3928 89 TTS 91 (115)
Q Consensus 89 ~~~ 91 (115)
+.|
T Consensus 118 ARP 120 (360)
T KOG0145|consen 118 ARP 120 (360)
T ss_pred ccC
Confidence 665
No 40
>KOG0108|consensus
Probab=99.45 E-value=4.4e-13 Score=95.84 Aligned_cols=80 Identities=28% Similarity=0.341 Sum_probs=76.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeeec
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTSR 92 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~~ 92 (115)
+.+||||+|.+++++.|..+|...|.+..++++.|+.+|+++||+|++|.+.+.++.|++.||+..+.|+.+++.....+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999877653
No 41
>KOG0148|consensus
Probab=99.45 E-value=1e-12 Score=87.74 Aligned_cols=81 Identities=23% Similarity=0.251 Sum_probs=72.4
Q ss_pred hhhhcccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCc
Q psy3928 3 ELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDY 82 (115)
Q Consensus 3 ~~~~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~ 82 (115)
|+..+...+.++|||||++..++++++++.|.+||+|.++++..+ +||+||.|.+.+.|..|+..+|+..+.|.
T Consensus 155 eV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~ 228 (321)
T KOG0148|consen 155 EVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQ 228 (321)
T ss_pred HHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCce
Confidence 555667788899999999999999999999999999999998765 58999999999999999999999999998
Q ss_pred eeeEEEe
Q psy3928 83 QSSILTT 89 (115)
Q Consensus 83 ~~~v~~~ 89 (115)
.++..=-
T Consensus 229 ~VkCsWG 235 (321)
T KOG0148|consen 229 LVRCSWG 235 (321)
T ss_pred EEEEecc
Confidence 7775533
No 42
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.44 E-value=2.2e-12 Score=70.33 Aligned_cols=72 Identities=36% Similarity=0.514 Sum_probs=64.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 14 VVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 14 ~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
+|+|+|||..+++.+|+++|+.+|.+..+.+..++ .+.+++++||+|.+.+.|+.|+..+++..+.+..+.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v 72 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRV 72 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 48999999999999999999999999999888766 3377899999999999999999999998888877654
No 43
>KOG0148|consensus
Probab=99.43 E-value=3.9e-13 Score=89.67 Aligned_cols=77 Identities=25% Similarity=0.353 Sum_probs=71.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
.-+||+.|...++-+.|++.|.+||.|+.+++++|..+++++||+||.|.+.++|+.|++.|||.=+.++.||.-=+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999888888875433
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.43 E-value=1.5e-12 Score=94.96 Aligned_cols=77 Identities=22% Similarity=0.193 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 10 KYGRVVLKEKLPP-EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 10 ~~~~~l~V~~l~~-~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....+|||+|||. .+++++|+++|..||.|..++++.++ +|+|||+|.+.++|+.|+..||+..+.|+.+.|..
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3567999999997 69999999999999999999997753 58999999999999999999999999999999876
Q ss_pred eee
Q psy3928 89 TTS 91 (115)
Q Consensus 89 ~~~ 91 (115)
.+.
T Consensus 348 s~~ 350 (481)
T TIGR01649 348 SKQ 350 (481)
T ss_pred ccc
Confidence 543
No 45
>KOG0144|consensus
Probab=99.39 E-value=3.9e-13 Score=94.48 Aligned_cols=68 Identities=25% Similarity=0.354 Sum_probs=64.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCC
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP 79 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 79 (115)
+.++||||.|++.++|.+++++|.+||.|..|+|+++. .+.++||+||.|.+.+.|..|++.||+...
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhcccee
Confidence 46889999999999999999999999999999999987 889999999999999999999999999853
No 46
>KOG0146|consensus
Probab=99.36 E-value=1.6e-12 Score=86.84 Aligned_cols=83 Identities=23% Similarity=0.295 Sum_probs=71.5
Q ss_pred hhcccC-CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCce
Q psy3928 5 VENNKK-YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQ 83 (115)
Q Consensus 5 ~~~~~~-~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 83 (115)
+.+.+. +.+++|||.|.+.-+|++++++|+.||.+.+|.+++.+ .|.++||+||.|.+..+|+.|+..|+|.......
T Consensus 11 dsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGA 89 (371)
T KOG0146|consen 11 DSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGA 89 (371)
T ss_pred ccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCC
Confidence 333333 67899999999999999999999999999999999887 8899999999999999999999999999766654
Q ss_pred eeEEE
Q psy3928 84 SSILT 88 (115)
Q Consensus 84 ~~v~~ 88 (115)
...+.
T Consensus 90 SSSLV 94 (371)
T KOG0146|consen 90 SSSLV 94 (371)
T ss_pred ccceE
Confidence 44333
No 47
>KOG0109|consensus
Probab=99.35 E-value=1.1e-12 Score=88.28 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=68.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeeec
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTSR 92 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~~ 92 (115)
.++||||||..+++.+|+.+|++||.+.+|.|+.+ |+||..++...++.|++.|++++++|..|.|...+.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999876 9999999999999999999999999999999988876
No 48
>smart00361 RRM_1 RNA recognition motif.
Probab=99.33 E-value=9.4e-12 Score=68.51 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=52.7
Q ss_pred HHHHHHHhh----hcCCeEEEE-eceeCCC--CCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 26 HDYIESVFS----KYGKVTYVS-LPKFKST--GKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 26 ~~~l~~~f~----~~g~i~~~~-i~~~~~~--~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
+++|+++|. .||.+..+. +..++.+ +.++|++||+|.+.++|++|+..|||..+.|+.+.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999884 6666655 889999999999999999999999999999887654
No 49
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.33 E-value=1.3e-11 Score=90.03 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=66.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCC--eEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCce------
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGK--VTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQ------ 83 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~--i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~------ 83 (115)
..+|||+|||..+++++|+++|+.||. +..+++...+ + ..+++|||+|.+.++|..|+..||+..+.+..
T Consensus 394 s~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~ 471 (481)
T TIGR01649 394 SATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYH 471 (481)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccce
Confidence 468999999999999999999999997 7778775433 3 35789999999999999999999999999875
Q ss_pred eeEEEeeec
Q psy3928 84 SSILTTTSR 92 (115)
Q Consensus 84 ~~v~~~~~~ 92 (115)
+++.+.+++
T Consensus 472 lkv~fs~~~ 480 (481)
T TIGR01649 472 LKVSFSTSR 480 (481)
T ss_pred EEEEeccCC
Confidence 666666543
No 50
>KOG0124|consensus
Probab=99.33 E-value=1.5e-12 Score=90.28 Aligned_cols=75 Identities=28% Similarity=0.319 Sum_probs=72.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
+.+|||.+.....|+.|+.-|.+||+|+.+.+.+++.+++.+||+||+|+-++.|+-|++.||+.-+.|+.+.|-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999887765
No 51
>KOG0145|consensus
Probab=99.32 E-value=1.7e-11 Score=81.76 Aligned_cols=82 Identities=26% Similarity=0.304 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
..+.-|||=||.++.+|..|+.+|.+||.+..+++++|..+.+.+||+||...+-++|..|+..|||+.+.++.+.|.+.
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999988777766
Q ss_pred ee
Q psy3928 90 TS 91 (115)
Q Consensus 90 ~~ 91 (115)
+.
T Consensus 356 tn 357 (360)
T KOG0145|consen 356 TN 357 (360)
T ss_pred cC
Confidence 54
No 52
>KOG0127|consensus
Probab=99.31 E-value=9.9e-12 Score=89.75 Aligned_cols=87 Identities=29% Similarity=0.406 Sum_probs=74.0
Q ss_pred cccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhC-----C-CCCC
Q psy3928 7 NNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGL-----N-PCPT 80 (115)
Q Consensus 7 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~-----~-~~~~ 80 (115)
++...+.+|||+|||.++++++|...|++||.+..+.++.++.|+.+.|.|||.|.+...++.|+..-. + ..++
T Consensus 287 en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 287 ENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred ccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 345567899999999999999999999999999999999999999999999999999999999998762 2 3466
Q ss_pred CceeeEEEeeecc
Q psy3928 81 DYQSSILTTTSRL 93 (115)
Q Consensus 81 ~~~~~v~~~~~~~ 93 (115)
|+.+.+..+-.|.
T Consensus 367 GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 367 GRLLKVTLAVTRK 379 (678)
T ss_pred ccEEeeeeccchH
Confidence 6776666655543
No 53
>KOG0127|consensus
Probab=99.31 E-value=6.6e-12 Score=90.65 Aligned_cols=85 Identities=21% Similarity=0.310 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
..+.+|||++||.+++.+.|.++|+.+|+|..+.++.++.++..+||+||.|+..+++++|+....+..+.|+.+++..+
T Consensus 3 ~~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 3 KSGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPA 82 (678)
T ss_pred CCCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccc
Confidence 34589999999999999999999999999999999999888889999999999999999999999999999999998887
Q ss_pred eeccc
Q psy3928 90 TSRLS 94 (115)
Q Consensus 90 ~~~~~ 94 (115)
+.|..
T Consensus 83 ~~R~r 87 (678)
T KOG0127|consen 83 KKRAR 87 (678)
T ss_pred ccccc
Confidence 76543
No 54
>KOG4208|consensus
Probab=99.30 E-value=1.6e-11 Score=79.09 Aligned_cols=80 Identities=30% Similarity=0.322 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhc-CCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKY-GKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~-g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
.....+|+..+|..+.+..+..+|.++ |.+..+++.+++.||.++|||||+|.+++.|.-|.++||++-+.++.+.+-.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 344678999999999999999999998 5677888889999999999999999999999999999999998887665444
Q ss_pred e
Q psy3928 89 T 89 (115)
Q Consensus 89 ~ 89 (115)
.
T Consensus 127 m 127 (214)
T KOG4208|consen 127 M 127 (214)
T ss_pred e
Confidence 3
No 55
>KOG0146|consensus
Probab=99.28 E-value=6e-12 Score=84.17 Aligned_cols=86 Identities=16% Similarity=0.148 Sum_probs=79.8
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
+..+++.|||=-||....+.+|..+|-+||.|...++..|+.+..+++|+||.|.++.+++.|+..|||..|.-+++.|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred Eeeecc
Q psy3928 88 TTTSRL 93 (115)
Q Consensus 88 ~~~~~~ 93 (115)
..+++.
T Consensus 361 LKRPkd 366 (371)
T KOG0146|consen 361 LKRPKD 366 (371)
T ss_pred hcCccc
Confidence 777654
No 56
>KOG0147|consensus
Probab=99.27 E-value=1.1e-11 Score=89.35 Aligned_cols=82 Identities=29% Similarity=0.381 Sum_probs=76.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeeecc
Q psy3928 14 VVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTSRL 93 (115)
Q Consensus 14 ~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~~~ 93 (115)
.+|||||..++++++|+.+|.+||.|..+.+..+..+|.++||+|++|...+.|..|+..|||..+-|+.+.|..++.+.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 39999999999999999999999999999999988899999999999999999999999999999999999998887765
Q ss_pred cc
Q psy3928 94 SF 95 (115)
Q Consensus 94 ~~ 95 (115)
..
T Consensus 360 ~~ 361 (549)
T KOG0147|consen 360 DT 361 (549)
T ss_pred cc
Confidence 43
No 57
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.20 E-value=9.3e-11 Score=61.67 Aligned_cols=55 Identities=35% Similarity=0.457 Sum_probs=47.5
Q ss_pred HHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 29 l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
|+++|++||.|..+.+.... +++|||+|.+.++|+.|++.||+..+.|+.+++..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 67899999999999885432 57999999999999999999999999999888764
No 58
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.19 E-value=7.4e-11 Score=86.39 Aligned_cols=74 Identities=28% Similarity=0.301 Sum_probs=59.3
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcC------------CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhC
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYG------------KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGL 75 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g------------~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 75 (115)
.....++|||+|||..+++.+|.++|..++ .+..+. .+..+|||||+|.+.++|..|+ .|+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCCHHHHhhhh-cCC
Confidence 345568999999999999999999999751 223332 2345789999999999999999 599
Q ss_pred CCCCCCceeeEEE
Q psy3928 76 NPCPTDYQSSILT 88 (115)
Q Consensus 76 ~~~~~~~~~~v~~ 88 (115)
+..+.|..+.+..
T Consensus 244 g~~~~g~~l~v~r 256 (509)
T TIGR01642 244 SIIYSNVFLKIRR 256 (509)
T ss_pred CeEeeCceeEecC
Confidence 9999998877653
No 59
>KOG0131|consensus
Probab=99.19 E-value=8.3e-11 Score=74.60 Aligned_cols=86 Identities=17% Similarity=0.276 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEE-EEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTY-VSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~-~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
.-+..+||+||.+.++|..|...|+.||.+.. .++++++.+|.+++++|+.|++.+.+.+|+..+|+..+..+++++..
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 34578999999999999999999999997744 58889998999999999999999999999999999999999999888
Q ss_pred eeecccc
Q psy3928 89 TTSRLSF 95 (115)
Q Consensus 89 ~~~~~~~ 95 (115)
+......
T Consensus 174 a~k~~~k 180 (203)
T KOG0131|consen 174 AFKKDTK 180 (203)
T ss_pred EEecCCC
Confidence 7764443
No 60
>KOG0415|consensus
Probab=99.19 E-value=5.2e-11 Score=82.35 Aligned_cols=83 Identities=27% Similarity=0.332 Sum_probs=77.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
.++...|||..|.+.++.++|.-+|+.||.|..|.+++++.+|.+..||||+|.+..+.++|.-+|++..++.+.|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred eee
Q psy3928 89 TTS 91 (115)
Q Consensus 89 ~~~ 91 (115)
..+
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 543
No 61
>KOG1457|consensus
Probab=99.16 E-value=3.2e-10 Score=74.18 Aligned_cols=81 Identities=17% Similarity=0.108 Sum_probs=61.6
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCC-CeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTG-KLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~-~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
.....+++||++||.++...+|+.+|+.|.......+..-...+ -.+.++|+.|.+.+.|.+|+..|||..++.....+
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 34567999999999999999999999998655444332211111 23469999999999999999999999988865444
Q ss_pred EE
Q psy3928 87 LT 88 (115)
Q Consensus 87 ~~ 88 (115)
+.
T Consensus 110 Lh 111 (284)
T KOG1457|consen 110 LH 111 (284)
T ss_pred eE
Confidence 43
No 62
>KOG0124|consensus
Probab=99.15 E-value=1.7e-10 Score=80.25 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
.-..|||..+.++.++++|+..|+.||.|..|.+-+.+.++..+||+|++|.+....+.|+..||-..+.|..++|-..-
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 44689999999999999999999999999999999999888899999999999999999999999999999999987654
No 63
>KOG4212|consensus
Probab=99.15 E-value=2.1e-10 Score=81.24 Aligned_cols=76 Identities=26% Similarity=0.314 Sum_probs=69.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhh-cCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSK-YGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~-~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
.+.+||.|+|.+....+|++++.. .|.+..|.++.+. +|+++||+.|+|.+++.+++|++.||.+.++|+.+.+-.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 466999999999999999999985 7899999999987 999999999999999999999999999999999876543
No 64
>KOG0123|consensus
Probab=99.14 E-value=3.5e-10 Score=80.04 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=69.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeee
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTS 91 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~ 91 (115)
..+||-||+++++...|.++|..||.|.+|++..+. .| ++|| ||+|.+++.|.+|+..+||..+.+..+-+.....
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 449999999999999999999999999999999987 45 8899 9999999999999999999999999988765544
No 65
>KOG0533|consensus
Probab=99.14 E-value=5.3e-10 Score=74.67 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=74.7
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
......+|+|.|||..+.+.+|+++|..|+.+..+.+.+++ .|.+.|.|-|.|...++|.++++.+++..++|+.+.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 34455789999999999999999999999988888888887 89999999999999999999999999999999998877
Q ss_pred Eeee
Q psy3928 88 TTTS 91 (115)
Q Consensus 88 ~~~~ 91 (115)
.+.+
T Consensus 158 ~i~~ 161 (243)
T KOG0533|consen 158 IISS 161 (243)
T ss_pred EecC
Confidence 6654
No 66
>KOG4206|consensus
Probab=99.11 E-value=5.8e-10 Score=72.81 Aligned_cols=77 Identities=27% Similarity=0.289 Sum_probs=69.6
Q ss_pred CEEEEcCCCCCCCHHHHHH----HhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 13 RVVLKEKLPPEAEHDYIES----VFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~----~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
.+|||.||+..+..++|++ +|++||.+..+.... +.+-+|-|||.|.+.+.|..|++.|+|..+-|+.+++.+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4999999999999988777 999999999887642 778899999999999999999999999999999999998
Q ss_pred eeec
Q psy3928 89 TTSR 92 (115)
Q Consensus 89 ~~~~ 92 (115)
++..
T Consensus 87 A~s~ 90 (221)
T KOG4206|consen 87 AKSD 90 (221)
T ss_pred ccCc
Confidence 8764
No 67
>KOG4205|consensus
Probab=99.08 E-value=2e-10 Score=79.28 Aligned_cols=85 Identities=24% Similarity=0.259 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
+.+++||++|++.++++.|+++|.+||.+..+.+++++.++.+++|+||+|++.....+++..-. ..++++.+.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~-h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART-HKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccc-cccCCccccceecc
Confidence 67899999999999999999999999999999999999999999999999999888888877544 46788888887777
Q ss_pred eccccC
Q psy3928 91 SRLSFG 96 (115)
Q Consensus 91 ~~~~~~ 96 (115)
+|....
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 765543
No 68
>KOG0123|consensus
Probab=99.01 E-value=1.8e-09 Score=76.43 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=65.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
..+||| +++++.+|.+.|.++|.+..+++.++. + +.|||||.|.++.+|++|++++|...+.|+.+++...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s 72 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWS 72 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehh
Confidence 468998 889999999999999999999999986 5 9999999999999999999999999999999887643
No 69
>KOG0109|consensus
Probab=98.99 E-value=9.6e-10 Score=74.35 Aligned_cols=78 Identities=24% Similarity=0.293 Sum_probs=71.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
...+++|+|+.+.++..+++..|++||.+.++.|+.+ |+||.|.-.++|..|++.|++..+.|+++.|...+
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 4578999999999999999999999999999999865 99999999999999999999999999999999988
Q ss_pred eccccC
Q psy3928 91 SRLSFG 96 (115)
Q Consensus 91 ~~~~~~ 96 (115)
+|...+
T Consensus 149 srlrta 154 (346)
T KOG0109|consen 149 SRLRTA 154 (346)
T ss_pred cccccC
Confidence 875543
No 70
>KOG4661|consensus
Probab=98.96 E-value=2.3e-09 Score=78.42 Aligned_cols=81 Identities=25% Similarity=0.281 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
-++.+||++|...+...+|+.+|.+||.|.-.+++.+-.+...++|+||++++.++|.+|+..|+...+.|+-|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 35789999999999999999999999999988888876666778999999999999999999999999999999998876
Q ss_pred e
Q psy3928 91 S 91 (115)
Q Consensus 91 ~ 91 (115)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 71
>KOG4205|consensus
Probab=98.96 E-value=1.4e-09 Score=75.18 Aligned_cols=83 Identities=19% Similarity=0.326 Sum_probs=73.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeee
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTS 91 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~ 91 (115)
..++||++||.++++.+++++|.+||.+..+.++.+..+..+++++||.|.+++.+.+++. ..-..++++.+.+..+.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 3599999999999999999999999999999999999899999999999999999998887 455678889999988887
Q ss_pred cccc
Q psy3928 92 RLSF 95 (115)
Q Consensus 92 ~~~~ 95 (115)
+...
T Consensus 176 k~~~ 179 (311)
T KOG4205|consen 176 KEVM 179 (311)
T ss_pred hhhc
Confidence 6443
No 72
>KOG4660|consensus
Probab=98.95 E-value=6.9e-10 Score=80.29 Aligned_cols=74 Identities=20% Similarity=0.289 Sum_probs=64.7
Q ss_pred cccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceee
Q psy3928 7 NNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSS 85 (115)
Q Consensus 7 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~ 85 (115)
+.+...++|+|-|||..+++++|+.+|..||+|+.++. +...++.+||+|.+..+|++|++.|++..+-++++.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34566789999999999999999999999999999765 445588999999999999999999999887777654
No 73
>KOG0132|consensus
Probab=98.93 E-value=3.9e-09 Score=79.11 Aligned_cols=70 Identities=21% Similarity=0.356 Sum_probs=62.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.++||||+|+..+++.+|..+|+.||.|.++.+..+ ++||||.....++|.+|+++|.+..+.++.+++.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 479999999999999999999999999999987654 6899999999999999999999888777766544
No 74
>KOG0153|consensus
Probab=98.84 E-value=1.2e-08 Score=70.40 Aligned_cols=76 Identities=26% Similarity=0.340 Sum_probs=61.9
Q ss_pred hcccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCC-CCCCCcee
Q psy3928 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN-PCPTDYQS 84 (115)
Q Consensus 6 ~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~-~~~~~~~~ 84 (115)
+..+..-.+|||++|...+++.+|++.|.+||++..+.+... +++|||+|.+...|+.|....-. ..++|+++
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 334566689999999999999999999999999999988754 35999999999999988865544 34677766
Q ss_pred eEE
Q psy3928 85 SIL 87 (115)
Q Consensus 85 ~v~ 87 (115)
.+.
T Consensus 296 ~i~ 298 (377)
T KOG0153|consen 296 KIK 298 (377)
T ss_pred EEE
Confidence 554
No 75
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.84 E-value=7.1e-08 Score=56.09 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=62.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhh--cCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCc
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSK--YGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDY 82 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~--~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~ 82 (115)
++|.+.|+|...+..+|.+.+.. .|....+.++.|..++.+.|||||.|.+++.|.+..+.++|..+...
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 68999999999999999998876 35667789999988899999999999999999999999999987654
No 76
>KOG4212|consensus
Probab=98.84 E-value=1.5e-08 Score=72.13 Aligned_cols=74 Identities=22% Similarity=0.313 Sum_probs=66.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
.+.++|||.|||.+++...|++-|..+|.+....|+- .|+++| .|.|.++++|+.|+..|++..++|+.|.|.+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 4457899999999999999999999999999888742 577766 8999999999999999999999999988764
No 77
>KOG4209|consensus
Probab=98.83 E-value=2.3e-08 Score=66.75 Aligned_cols=84 Identities=24% Similarity=0.213 Sum_probs=75.5
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
...+...+||+|+...++..++...|+.||.+..+.++.++..+.++|++||+|.+...++.+++ |++..+.+..+.+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34567899999999999998899999999999999999998888899999999999999999999 99999999998877
Q ss_pred Eeeec
Q psy3928 88 TTTSR 92 (115)
Q Consensus 88 ~~~~~ 92 (115)
....+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 66544
No 78
>KOG1548|consensus
Probab=98.81 E-value=3.9e-08 Score=67.97 Aligned_cols=85 Identities=21% Similarity=0.188 Sum_probs=73.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEE--------EEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCce
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTY--------VSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQ 83 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~--------~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 83 (115)
...|||+|||.+++-+++.++|..+|-|.. |++.++. .|+.+|=+.+.|...+++.-|+..|++..+.|..
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 356999999999999999999999986643 6777776 6999999999999999999999999999999999
Q ss_pred eeEEEeeeccccCC
Q psy3928 84 SSILTTTSRLSFGI 97 (115)
Q Consensus 84 ~~v~~~~~~~~~~~ 97 (115)
++|..++-.....+
T Consensus 213 ~rVerAkfq~Kge~ 226 (382)
T KOG1548|consen 213 LRVERAKFQMKGEY 226 (382)
T ss_pred EEEehhhhhhccCc
Confidence 99998876444333
No 79
>KOG0116|consensus
Probab=98.79 E-value=3.7e-08 Score=70.55 Aligned_cols=80 Identities=23% Similarity=0.332 Sum_probs=65.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
....|||.|||.+++..+|.+.|.+||.|+...|....-.++..+|+||+|.+.+.++.++.+- -..++++++.|...+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecc
Confidence 3456999999999999999999999999998776543223444489999999999999999875 556777888887766
Q ss_pred e
Q psy3928 91 S 91 (115)
Q Consensus 91 ~ 91 (115)
+
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 5
No 80
>KOG0110|consensus
Probab=98.77 E-value=3.8e-08 Score=73.22 Aligned_cols=78 Identities=24% Similarity=0.314 Sum_probs=66.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCC---CeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTG---KLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~---~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
.++||.||+.+++...+...|...|.+..+.|...+... -+.||+||+|.+.++|+.|++.|+|..++|..+.+...
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999988776554222 14599999999999999999999999999998877665
Q ss_pred e
Q psy3928 90 T 90 (115)
Q Consensus 90 ~ 90 (115)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 5
No 81
>KOG0226|consensus
Probab=98.71 E-value=1.8e-08 Score=67.10 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=72.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
+....+||.|.|...++.+.|-+.|.+|-.....++++++.+|+++||+||.|.+..++-.|++.|+|.-++.+.|..+.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 44567899999999999999999999998777778899988999999999999999999999999999988887776554
Q ss_pred eee
Q psy3928 89 TTS 91 (115)
Q Consensus 89 ~~~ 91 (115)
...
T Consensus 267 S~w 269 (290)
T KOG0226|consen 267 SEW 269 (290)
T ss_pred hhH
Confidence 443
No 82
>KOG0151|consensus
Probab=98.69 E-value=4.5e-08 Score=73.06 Aligned_cols=81 Identities=15% Similarity=0.268 Sum_probs=69.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCC---CCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceee
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKST---GKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSS 85 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~---~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~ 85 (115)
++..+.+||+||++.++++.|...|..||++..+++++.+.. ...+.|+||.|-+..+|++|++.|+|..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 455689999999999999999999999999999999887632 34467999999999999999999999988777666
Q ss_pred EEEe
Q psy3928 86 ILTT 89 (115)
Q Consensus 86 v~~~ 89 (115)
+.-.
T Consensus 251 ~gWg 254 (877)
T KOG0151|consen 251 LGWG 254 (877)
T ss_pred eccc
Confidence 5443
No 83
>KOG0110|consensus
Probab=98.69 E-value=2.5e-08 Score=74.14 Aligned_cols=79 Identities=27% Similarity=0.406 Sum_probs=69.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..+|.|.|+|...+-.+++.+|..||+++.++++.-...+..+|+|||+|-++++|..|...|.+..+-|+++-+..++
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 4689999999999999999999999999999998754455679999999999999999999999888888876655543
No 84
>KOG4211|consensus
Probab=98.64 E-value=2.7e-07 Score=66.39 Aligned_cols=80 Identities=25% Similarity=0.333 Sum_probs=65.7
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
+.+....|-+.+||+++++++|+++|+.++ |..+.+.+ .+|++.|-|||+|.+.++++.|+++ +...+..+.|.|.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEE
Confidence 344566788899999999999999999996 77766554 3799999999999999999999984 5456677778887
Q ss_pred Eeee
Q psy3928 88 TTTS 91 (115)
Q Consensus 88 ~~~~ 91 (115)
.+..
T Consensus 82 ~~~~ 85 (510)
T KOG4211|consen 82 TAGG 85 (510)
T ss_pred ccCC
Confidence 7654
No 85
>KOG0106|consensus
Probab=98.57 E-value=1e-07 Score=62.71 Aligned_cols=70 Identities=24% Similarity=0.319 Sum_probs=61.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..+||++||..+.+.++..+|..||.+..+.+. .+|+||+|.+..+|..|+..+|+..+.+..+.+..++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 368999999999999999999999999888764 3588999999999999999999999999885555554
No 86
>KOG4454|consensus
Probab=98.52 E-value=5.2e-08 Score=63.77 Aligned_cols=73 Identities=19% Similarity=0.273 Sum_probs=63.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSS 85 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~ 85 (115)
..++|||+|+...++|+.|.++|-+.|+|..+.|...+ .++.+ ||||.|.++....-|+..+||..+.+..+.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 35789999999999999999999999999999998776 45555 999999999999999999999987776543
No 87
>KOG0120|consensus
Probab=98.50 E-value=1.3e-07 Score=68.83 Aligned_cols=81 Identities=20% Similarity=0.234 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
...++||++||....+..+++++..||.++...+..+..+|.++||||.+|.+......|+..|||+.+.+..+.+..+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 45789999999999999999999999999999888888789999999999999999999999999999998887776554
Q ss_pred e
Q psy3928 91 S 91 (115)
Q Consensus 91 ~ 91 (115)
.
T Consensus 368 ~ 368 (500)
T KOG0120|consen 368 V 368 (500)
T ss_pred c
Confidence 3
No 88
>KOG3152|consensus
Probab=98.23 E-value=1.8e-06 Score=57.76 Aligned_cols=75 Identities=27% Similarity=0.276 Sum_probs=62.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCC--------CCeee----EEEEEecCHHHHHHHHHhhCCCC
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKST--------GKLKG----FAFVEFSTKEEATKALELGLNPC 78 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~--------~~~~g----~~fv~f~~~~~a~~al~~l~~~~ 78 (115)
....||++++|+.+....|+++|..||.|-.+.+.....+ |.... -+.|+|.+...|..+...||+.+
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5579999999999999999999999999999988766443 23222 36699999999999999999999
Q ss_pred CCCceee
Q psy3928 79 PTDYQSS 85 (115)
Q Consensus 79 ~~~~~~~ 85 (115)
+.|+.-.
T Consensus 153 Iggkk~S 159 (278)
T KOG3152|consen 153 IGGKKKS 159 (278)
T ss_pred cCCCCCC
Confidence 9997643
No 89
>KOG1457|consensus
Probab=98.22 E-value=1.9e-06 Score=56.80 Aligned_cols=64 Identities=20% Similarity=0.340 Sum_probs=53.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCC
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPT 80 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~ 80 (115)
.++||.||...++|++|+.+|..|.....++|.. + +|. ..+|++|++.+.|..|+..|+|..+.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~-~g~--~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-R-GGM--PVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-C-CCc--ceEeecHHHHHHHHHHHHHhhcceec
Confidence 4799999999999999999999997766666532 2 444 48999999999999999999997543
No 90
>KOG2314|consensus
Probab=98.15 E-value=1.1e-05 Score=59.33 Aligned_cols=71 Identities=27% Similarity=0.383 Sum_probs=59.0
Q ss_pred CCCEEEEcCCCCCCCHH------HHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCc
Q psy3928 11 YGRVVLKEKLPPEAEHD------YIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDY 82 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~------~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~ 82 (115)
....|+|.|+|..-... -|.++|+++|.+..+.++.+..+| ++||.|++|.+..+|+.|++.+||+.++..
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 34678899999754332 378889999999999888877444 899999999999999999999999987765
No 91
>KOG1995|consensus
Probab=98.15 E-value=5.4e-06 Score=57.76 Aligned_cols=86 Identities=17% Similarity=0.129 Sum_probs=74.4
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEE--------EEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCC
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTY--------VSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP 79 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~--------~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 79 (115)
......+|||.+||..++++.+..+|.+++.|+. +.+..++.|+++++-|.|.|.+...|++|+.-+++..+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3556679999999999999999999999986643 56677788999999999999999999999999999999
Q ss_pred CCceeeEEEeeecc
Q psy3928 80 TDYQSSILTTTSRL 93 (115)
Q Consensus 80 ~~~~~~v~~~~~~~ 93 (115)
.+..+.|..++.+.
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99888877766543
No 92
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.06 E-value=5.3e-05 Score=42.75 Aligned_cols=69 Identities=20% Similarity=0.249 Sum_probs=45.4
Q ss_pred CEEEEcCCCCCCCHHH----HHHHhhhcC-CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 13 RVVLKEKLPPEAEHDY----IESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~----l~~~f~~~g-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
..|+|.|||.+.+... |+.++..+| .+..+ ++ +-|++.|.+.+.|.+|.+.|+|-.+-|..|.+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------SG---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------eC---CEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3689999999988766 555666776 34433 22 479999999999999999999999999998887
Q ss_pred Eeee
Q psy3928 88 TTTS 91 (115)
Q Consensus 88 ~~~~ 91 (115)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 6643
No 93
>KOG4211|consensus
Probab=98.05 E-value=1.7e-05 Score=57.43 Aligned_cols=77 Identities=25% Similarity=0.250 Sum_probs=59.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEE-EEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTY-VSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~-~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
....|-+.+||..+++++|.++|+..--+.. +.++.++ .+++.|-|||.|++.+.|+.|+.... ..+..+.|.|...
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhr-e~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHR-ENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHH-HhhccceEEeehh
Confidence 4468889999999999999999998743333 4455555 67789999999999999999998654 3456666666544
No 94
>KOG0147|consensus
Probab=98.05 E-value=1.7e-06 Score=63.11 Aligned_cols=78 Identities=22% Similarity=0.222 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
.+.+++|+-.++...++.+|.++|..+|.|..+.++.++.++.++|.+||+|.+.+.+..|+ .|.|..+.|.++-+..
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 34577888888888999999999999999999999999999999999999999999999998 5899888888776654
No 95
>KOG4206|consensus
Probab=98.02 E-value=3.2e-05 Score=50.91 Aligned_cols=67 Identities=21% Similarity=0.328 Sum_probs=58.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCC
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPT 80 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~ 80 (115)
-....++|+.|+|..++...+..+|.+|...+.++++..+ .+.+||+|.+...+..|...+++..+.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceec
Confidence 3456789999999999999999999999999999887654 569999999999999999999997655
No 96
>KOG1190|consensus
Probab=97.98 E-value=5e-05 Score=54.09 Aligned_cols=75 Identities=20% Similarity=0.189 Sum_probs=65.6
Q ss_pred CCEEEEcCCCC-CCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 12 GRVVLKEKLPP-EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 12 ~~~l~V~~l~~-~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
...|.|.||.. .++.+.|..+|..||.+.+++|+.++. --|.|.+++...|+-|+..|+|..+-|+.+++...+
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 46788888864 578899999999999999999998752 379999999999999999999999999999987765
Q ss_pred e
Q psy3928 91 S 91 (115)
Q Consensus 91 ~ 91 (115)
.
T Consensus 372 H 372 (492)
T KOG1190|consen 372 H 372 (492)
T ss_pred C
Confidence 4
No 97
>KOG4849|consensus
Probab=97.87 E-value=2.1e-05 Score=55.04 Aligned_cols=76 Identities=9% Similarity=0.132 Sum_probs=64.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcC--CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYG--KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g--~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
...-+|||||-+.++.++|.+.+.+.| ++..+++.-++.+|+++|||++...+....++.++.|-...+.|..-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 345689999999999999999998876 5667777888889999999999999999999999999888888765444
No 98
>KOG4307|consensus
Probab=97.86 E-value=0.0001 Score=55.77 Aligned_cols=83 Identities=22% Similarity=0.201 Sum_probs=65.6
Q ss_pred hhhcccCCCC-EEEEcCCCCCCCHHHHHHHhhhcCCeE-EEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCC
Q psy3928 4 LVENNKKYGR-VVLKEKLPPEAEHDYIESVFSKYGKVT-YVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTD 81 (115)
Q Consensus 4 ~~~~~~~~~~-~l~V~~l~~~~~~~~l~~~f~~~g~i~-~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~ 81 (115)
+.+...+.+. .|-+.|+|.+++-++|.++|..|-.+. .+.+-++ +.|...|-|.|.|++.++|.+|...+++.+|..
T Consensus 858 ~~~~~~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~n 936 (944)
T KOG4307|consen 858 LMELIKSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRN 936 (944)
T ss_pred HHHhcCCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccc
Confidence 3444444444 788999999999999999999996543 3444443 489999999999999999999999999988877
Q ss_pred ceeeEE
Q psy3928 82 YQSSIL 87 (115)
Q Consensus 82 ~~~~v~ 87 (115)
+.+.+.
T Consensus 937 r~V~l~ 942 (944)
T KOG4307|consen 937 RVVSLR 942 (944)
T ss_pred eeEEEE
Confidence 766543
No 99
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.79 E-value=0.00013 Score=43.11 Aligned_cols=59 Identities=31% Similarity=0.459 Sum_probs=38.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCC
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNP 77 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~ 77 (115)
..|.+.+++..++.++|+..|..||.|..+.+.. |.. -|+|.|.+.+.|+.|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~----G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR----GDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T----T-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC----CCC--EEEEEECCcchHHHHHHHHHhc
Confidence 5788989999999999999999999998887643 333 7899999999999999877665
No 100
>KOG0129|consensus
Probab=97.66 E-value=0.00022 Score=52.04 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=57.6
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhh-hcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHH
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFS-KYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~-~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~ 72 (115)
.-+..++||||+||.-++..+|-.+|. -||.|..+-|-.|++-..++|=+-|.|++.+.--+|+.
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 345678999999999999999999998 59999999998887778899999999999988888875
No 101
>KOG4210|consensus
Probab=97.65 E-value=6.3e-05 Score=51.89 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=70.6
Q ss_pred CEEE-EcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeee
Q psy3928 13 RVVL-KEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTS 91 (115)
Q Consensus 13 ~~l~-V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~ 91 (115)
.++| |++++..+++++|+..|..+|.+..+++..++.++...+++++.|........++.. +...+.+..+.+....+
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 4555 999999999999999999999999999999988999999999999999999999887 77788888877777766
Q ss_pred cc
Q psy3928 92 RL 93 (115)
Q Consensus 92 ~~ 93 (115)
+.
T Consensus 264 ~~ 265 (285)
T KOG4210|consen 264 RP 265 (285)
T ss_pred Cc
Confidence 53
No 102
>KOG0129|consensus
Probab=97.65 E-value=0.00019 Score=52.39 Aligned_cols=65 Identities=25% Similarity=0.411 Sum_probs=49.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCC--C-CCeee---EEEEEecCHHHHHHHHHhhCC
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKS--T-GKLKG---FAFVEFSTKEEATKALELGLN 76 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~--~-~~~~g---~~fv~f~~~~~a~~al~~l~~ 76 (115)
..++||||+||++++|+.|...|..||.+ .+.++.... . --++| |+|+.|.++..++..+.++..
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~ 328 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE 328 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence 45799999999999999999999999944 344442111 1 11345 999999999999998887765
No 103
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.63 E-value=0.00034 Score=36.21 Aligned_cols=52 Identities=17% Similarity=0.517 Sum_probs=41.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHH
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al 71 (115)
+.|-|.|.+.+.. +.++..|.+||.|....+. ......++.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 4577888888755 4567789999999998774 22348999999999999885
No 104
>KOG0105|consensus
Probab=97.57 E-value=0.0018 Score=41.94 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=57.8
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCC
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTD 81 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~ 81 (115)
.+.....|.|++||++.+..+|+..+..-|.++...+.++ |.+.|+|-..++.+.|+..|....+..
T Consensus 111 srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccC
Confidence 3445578999999999999999999999999998877654 388999999999999999999876555
No 105
>KOG0106|consensus
Probab=97.56 E-value=6.7e-05 Score=49.55 Aligned_cols=68 Identities=29% Similarity=0.348 Sum_probs=59.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
..+.+.|.+++..+.+.+|...|.++|.+....+ ..+.+||+|....++..|+..+++..+.+..+.+
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 4578889999999999999999999998843322 2458999999999999999999999999998887
No 106
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.52 E-value=0.00049 Score=48.24 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=57.4
Q ss_pred CCEEEEcCCCCCCCHHH------HHHHhhhcCCeEEEEeceeC-CCCCeeeE--EEEEecCHHHHHHHHHhhCCCCCCCc
Q psy3928 12 GRVVLKEKLPPEAEHDY------IESVFSKYGKVTYVSLPKFK-STGKLKGF--AFVEFSTKEEATKALELGLNPCPTDY 82 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~------l~~~f~~~g~i~~~~i~~~~-~~~~~~g~--~fv~f~~~~~a~~al~~l~~~~~~~~ 82 (115)
...+||-+||+.+..++ -.++|.+||.|..+.+-..- ......++ .||.|.+.++|.+|+...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999987765544 36899999999987653321 11122233 49999999999999999999999999
Q ss_pred eeeEEEe
Q psy3928 83 QSSILTT 89 (115)
Q Consensus 83 ~~~v~~~ 89 (115)
.++..+-
T Consensus 194 ~lkatYG 200 (480)
T COG5175 194 VLKATYG 200 (480)
T ss_pred eEeeecC
Confidence 8776543
No 107
>KOG1855|consensus
Probab=97.51 E-value=0.00018 Score=51.59 Aligned_cols=68 Identities=26% Similarity=0.335 Sum_probs=55.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEecee---CCC--CC--------eeeEEEEEecCHHHHHHHHHhhCC
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKF---KST--GK--------LKGFAFVEFSTKEEATKALELGLN 76 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~---~~~--~~--------~~g~~fv~f~~~~~a~~al~~l~~ 76 (115)
-..++|.+.|||.+-.-+.|.++|..+|.|+.++|... +.+ +. .+-+|+|+|.....|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36789999999998777889999999999999998765 221 11 245899999999999999998865
Q ss_pred C
Q psy3928 77 P 77 (115)
Q Consensus 77 ~ 77 (115)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 4
No 108
>KOG1365|consensus
Probab=97.32 E-value=0.00031 Score=49.91 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=62.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCC-eEE--EEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGK-VTY--VSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~-i~~--~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
.-|-+++||...+.++|..+|..|.. +.. +.++.+. .|.+.|-|||++.+.+.|.+|.+..+....+.+.+.+...
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 45789999999999999999999863 443 6777765 8899999999999999999999998887666666666543
No 109
>KOG1190|consensus
Probab=97.31 E-value=0.0011 Score=47.49 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=59.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCC-eEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCc-eeeEEE
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGK-VTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDY-QSSILT 88 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~-i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~-~~~v~~ 88 (115)
...++.++|+|.+++|++++..|..-|. ++..+. -++.+.++.+.+.+.++|-.|+..++...+.+. .+||-+
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafkf-----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF-----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeeee-----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 3458899999999999999999998764 455544 344566999999999999999999998877665 456655
Q ss_pred ee
Q psy3928 89 TT 90 (115)
Q Consensus 89 ~~ 90 (115)
.+
T Consensus 488 Sk 489 (492)
T KOG1190|consen 488 SK 489 (492)
T ss_pred ec
Confidence 44
No 110
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=97.14 E-value=0.018 Score=34.36 Aligned_cols=76 Identities=9% Similarity=0.052 Sum_probs=52.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhcC-CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCc---eeeEEEe
Q psy3928 14 VVLKEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDY---QSSILTT 89 (115)
Q Consensus 14 ~l~V~~l~~~~~~~~l~~~f~~~g-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~---~~~v~~~ 89 (115)
.+.+...|..+..+.|..+.+.+- .+..++++++ ....+..+.+.|.+...|......+||..++.. ..++.++
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird--~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV 92 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRD--GTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFV 92 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeC--CCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEE
Confidence 333434444455556665555553 5677888775 344677899999999999999999999987663 4555555
Q ss_pred ee
Q psy3928 90 TS 91 (115)
Q Consensus 90 ~~ 91 (115)
+.
T Consensus 93 ~~ 94 (110)
T PF07576_consen 93 KS 94 (110)
T ss_pred EE
Confidence 44
No 111
>KOG1456|consensus
Probab=97.09 E-value=0.0056 Score=43.60 Aligned_cols=77 Identities=22% Similarity=0.176 Sum_probs=65.0
Q ss_pred cCCCCEEEEcCCCCC-CCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 9 KKYGRVVLKEKLPPE-AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~-~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
...+..+.|-+|... +..+.|..+|-.||.+.++++++-+ .|-|.|+..+....++|+..||+..+-|.++.+.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 445678899999865 5667899999999999999987644 4679999999999999999999999999888876
Q ss_pred Eee
Q psy3928 88 TTT 90 (115)
Q Consensus 88 ~~~ 90 (115)
..+
T Consensus 359 ~Sk 361 (494)
T KOG1456|consen 359 VSK 361 (494)
T ss_pred ecc
Confidence 544
No 112
>KOG1365|consensus
Probab=97.06 E-value=0.0036 Score=44.72 Aligned_cols=63 Identities=27% Similarity=0.231 Sum_probs=49.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhc----CCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhC
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKY----GKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGL 75 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~----g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 75 (115)
.-.|-.++||.+.++.++..+|.+- +....+.++..+ +|+..|-|||.|..+++|+.||.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khr 227 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHR 227 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHH
Confidence 3466678999999999999999632 234455555544 78999999999999999999997543
No 113
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.97 E-value=0.0037 Score=36.63 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=46.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEE-eceeCC------CCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCce
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVS-LPKFKS------TGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQ 83 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~-i~~~~~------~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 83 (115)
...-|.|-+.|+. ....+.+.|++||.|.+.. +..+.. ......+-.+.|.++.+|++||. -||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4456888899998 5577899999999987653 111100 01123489999999999999998 5887777654
No 114
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.88 E-value=0.014 Score=31.17 Aligned_cols=56 Identities=21% Similarity=0.129 Sum_probs=43.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhc---CCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhh
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKY---GKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELG 74 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~---g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 74 (115)
.+.+|+|.|+.. ++.++++.+|..| .....+.++.+. -|-|.|.+...|.+||..|
T Consensus 4 rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 346799999865 6778899999988 135567777653 4789999999999999864
No 115
>KOG0120|consensus
Probab=96.87 E-value=0.0055 Score=45.30 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=47.0
Q ss_pred HHHHhhhcCCeEEEEeceeCCC---CCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 29 IESVFSKYGKVTYVSLPKFKST---GKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 29 l~~~f~~~g~i~~~~i~~~~~~---~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
++.-+..||.+..|.+.++... .-..|..||+|.+.++++.|...|+|..+.++.+-..+
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 4445567888999988876222 33467899999999999999999999999998765443
No 116
>KOG1548|consensus
Probab=96.78 E-value=0.0077 Score=42.40 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=55.5
Q ss_pred CCCEEEEcCCCC----CCC-------HHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCC
Q psy3928 11 YGRVVLKEKLPP----EAE-------HDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP 79 (115)
Q Consensus 11 ~~~~l~V~~l~~----~~~-------~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 79 (115)
..++|.+.|+-. ..+ .++|++--..||.+..+.+. ...+.|.+-|.|.+...|+.|++.|+|.-+
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~----d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY----DRHPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe----ccCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 457788877631 112 12355556789999998764 345678999999999999999999999999
Q ss_pred CCceeeEEE
Q psy3928 80 TDYQSSILT 88 (115)
Q Consensus 80 ~~~~~~v~~ 88 (115)
+|+++....
T Consensus 340 dgRql~A~i 348 (382)
T KOG1548|consen 340 DGRQLTASI 348 (382)
T ss_pred cceEEEEEE
Confidence 999876543
No 117
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.74 E-value=0.0064 Score=37.91 Aligned_cols=80 Identities=19% Similarity=0.152 Sum_probs=50.6
Q ss_pred hhhhcccCCCCEEEEcCCC------CCCCH---HHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHh
Q psy3928 3 ELVENNKKYGRVVLKEKLP------PEAEH---DYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73 (115)
Q Consensus 3 ~~~~~~~~~~~~l~V~~l~------~~~~~---~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 73 (115)
++.....+...+|.|.-.. ....+ .+|.+.|..||.+.-+++..+ .-.|+|.+-..|.+|+.
T Consensus 18 eVi~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals- 88 (146)
T PF08952_consen 18 EVISSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS- 88 (146)
T ss_dssp --S-----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-
T ss_pred HHHHhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-
Confidence 3444455666777776555 22333 257778888998776666432 57899999999999998
Q ss_pred hCCCCCCCceeeEEEeee
Q psy3928 74 GLNPCPTDYQSSILTTTS 91 (115)
Q Consensus 74 l~~~~~~~~~~~v~~~~~ 91 (115)
++|..+.|..+.+...++
T Consensus 89 ~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 89 LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp GCCSEETTEEEEEEE---
T ss_pred cCCcEECCEEEEEEeCCc
Confidence 899999999988887765
No 118
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.65 E-value=0.018 Score=32.56 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=41.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCC
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~ 76 (115)
.+..+|+ .|..+...+|.++|++||.|. +.++.+- =|||.....+.+..++..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 4566776 999999999999999999764 4555432 589999999999999998864
No 119
>KOG0128|consensus
Probab=96.58 E-value=0.0011 Score=51.20 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=64.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
..+++|+|.|...+.++++.++..+|.+..++++..+ .|+++|.+++.|.++.++.+++.......+.-..+.+..
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 4689999999999999999999999999988877776 899999999999999999999988777765555444433
No 120
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.46 E-value=0.0055 Score=39.51 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=46.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhh-cCCe---EEEE--eceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCce
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSK-YGKV---TYVS--LPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQ 83 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~-~g~i---~~~~--i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 83 (115)
....+|.|+.||++++++++.+.+.+ ++.- ..+. ............-||+.|.+.+++......++|..+.+..
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999998887776 5544 3332 1111111123457999999999999999999997755544
Q ss_pred e
Q psy3928 84 S 84 (115)
Q Consensus 84 ~ 84 (115)
.
T Consensus 85 g 85 (176)
T PF03467_consen 85 G 85 (176)
T ss_dssp S
T ss_pred C
Confidence 3
No 121
>KOG0115|consensus
Probab=96.44 E-value=0.0055 Score=41.45 Aligned_cols=65 Identities=23% Similarity=0.240 Sum_probs=55.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCC
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPC 78 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 78 (115)
..|||.||+..++-+.+..-|+.||++....+..+- .++..+-.+|+|.....|..|+..+....
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g 96 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGG 96 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCc
Confidence 679999999999999999999999998765444442 67888899999999999999999886544
No 122
>KOG4676|consensus
Probab=96.29 E-value=0.0098 Score=42.60 Aligned_cols=75 Identities=19% Similarity=0.220 Sum_probs=56.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCC---CCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKST---GKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~---~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
....|-|.||.+.++.++++.+|...|.|..+.|+.+... ......|||.|.+.+.+..|.. |.+..+-+..+-|
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 3458999999999999999999999999999988764322 2345689999999888876665 5555555554433
No 123
>KOG0128|consensus
Probab=96.15 E-value=0.00014 Score=55.79 Aligned_cols=67 Identities=22% Similarity=0.307 Sum_probs=56.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCC
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNP 77 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~ 77 (115)
...++||+||+..+.+.+|...|..+|.+..+++......+..+|+|+++|..+.++.+++......
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~ 732 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC 732 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh
Confidence 3467899999999999999999999998877776655567889999999999999999999755544
No 124
>KOG0112|consensus
Probab=96.13 E-value=0.0015 Score=50.72 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=64.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
.....+||+|||+..+++.+|+..|..+|.+..|.|-..+ -+.-.-|+|+.|.+.+.+..++..+.+..|....+++..
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 3456799999999999999999999999999988876553 222234999999999999999999998877766555444
Q ss_pred e
Q psy3928 89 T 89 (115)
Q Consensus 89 ~ 89 (115)
-
T Consensus 448 G 448 (975)
T KOG0112|consen 448 G 448 (975)
T ss_pred c
Confidence 4
No 125
>KOG0112|consensus
Probab=95.74 E-value=0.022 Score=44.66 Aligned_cols=73 Identities=11% Similarity=0.153 Sum_probs=60.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCce--eeEEE
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQ--SSILT 88 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~--~~v~~ 88 (115)
..+.+++++|+.+.....+...|..||.+..+.+- -|. .|+++.|.+...++.|+..+.+.++.+.. ++|.+
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hgq--~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HGQ--PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cCC--cceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 34679999999999999999999999999886542 233 39999999999999999999999988854 44444
Q ss_pred e
Q psy3928 89 T 89 (115)
Q Consensus 89 ~ 89 (115)
+
T Consensus 528 a 528 (975)
T KOG0112|consen 528 A 528 (975)
T ss_pred c
Confidence 4
No 126
>KOG0804|consensus
Probab=95.70 E-value=0.11 Score=38.06 Aligned_cols=69 Identities=6% Similarity=0.020 Sum_probs=58.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcC-CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCc
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDY 82 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~ 82 (115)
...|.|=.+|..++-.+|..|...+- .|..++++++ ....+-...+.|.+..+|..+...+||..++..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd--~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD--GMPNRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec--CCCceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 67788888999999999999999864 6788999885 344566899999999999999999999987664
No 127
>KOG2202|consensus
Probab=95.40 E-value=0.012 Score=39.76 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=46.3
Q ss_pred HHHHhh-hcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 29 IESVFS-KYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 29 l~~~f~-~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
+...|. +||.+..+.+-.+. .-.-.|-++|.|...++|++|+..||+.-+.|+++.....
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 434444 78988887654432 3345678999999999999999999999999999876654
No 128
>KOG4307|consensus
Probab=95.22 E-value=0.016 Score=44.49 Aligned_cols=79 Identities=18% Similarity=0.109 Sum_probs=56.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEE-EEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTY-VSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~-~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
..-+..|||.+||..+.+.++.++|.....+.. +.|.+.+ ++..++-|||+|..++.+..|+..-...-+..+.|+|.
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 344578999999999999999999987555544 7776666 77788899999999777777765433333333444544
Q ss_pred E
Q psy3928 88 T 88 (115)
Q Consensus 88 ~ 88 (115)
.
T Consensus 510 s 510 (944)
T KOG4307|consen 510 S 510 (944)
T ss_pred c
Confidence 3
No 129
>KOG2416|consensus
Probab=95.18 E-value=0.027 Score=42.43 Aligned_cols=74 Identities=18% Similarity=0.085 Sum_probs=56.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhh-cCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCC---Cceee
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSK-YGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPT---DYQSS 85 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~-~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~---~~~~~ 85 (115)
...+.|||.||-.-++...|+.++.. .|.|... |+ + +-+.+|||.|.+.++|.+...+|||.... ++.+.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 44579999999999999999999995 5555555 32 2 23459999999999999999999998643 34555
Q ss_pred EEEe
Q psy3928 86 ILTT 89 (115)
Q Consensus 86 v~~~ 89 (115)
+.+.
T Consensus 516 adf~ 519 (718)
T KOG2416|consen 516 ADFV 519 (718)
T ss_pred eeec
Confidence 5444
No 130
>KOG1456|consensus
Probab=95.09 E-value=0.13 Score=36.89 Aligned_cols=73 Identities=15% Similarity=0.064 Sum_probs=55.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCC-eEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCce
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGK-VTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQ 83 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~-i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 83 (115)
....++|..-|.|..++|+.|..++..-+. ...+++...+ .....-+.+||++.++|-.++-.+|+.++.+..
T Consensus 403 q~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k--serSssGllEfe~~s~Aveal~~~NH~pi~~p~ 476 (494)
T KOG1456|consen 403 QPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK--SERSSSGLLEFENKSDAVEALMKLNHYPIEGPN 476 (494)
T ss_pred cCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc--ccccccceeeeehHHHHHHHHHHhccccccCCC
Confidence 345678999999999999999999987652 3445554333 222335788999999999999999999887753
No 131
>KOG1996|consensus
Probab=94.50 E-value=0.2 Score=34.95 Aligned_cols=62 Identities=27% Similarity=0.115 Sum_probs=47.3
Q ss_pred HHHHHHhhhcCCeEEEEeceeCCCCCe-eeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 27 DYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 27 ~~l~~~f~~~g~i~~~~i~~~~~~~~~-~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
+++.+-..+||.+..|.|.-.+..-.. .---||+|...++|.+|+..|||.-+.|+.++..+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 457777889999988876555422221 23579999999999999999999999998766544
No 132
>KOG4660|consensus
Probab=94.19 E-value=0.099 Score=39.04 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=48.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhh-hcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCc
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFS-KYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDY 82 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~-~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~ 82 (115)
.++.+-|+|...+...|.+... ..|.-..+.++.+-.+....|||||.|.+...+..+.+++||+..+.+
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~F 459 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKF 459 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhh
Confidence 3444445554444444433322 245556677777776778899999999999999999999999975543
No 133
>KOG2068|consensus
Probab=93.89 E-value=0.023 Score=39.82 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=52.0
Q ss_pred CEEEEcCCCCCCCHHHH---HHHhhhcCCeEEEEeceeCC--CC-CeeeEEEEEecCHHHHHHHHHhhCCCCCCCceee
Q psy3928 13 RVVLKEKLPPEAEHDYI---ESVFSKYGKVTYVSLPKFKS--TG-KLKGFAFVEFSTKEEATKALELGLNPCPTDYQSS 85 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l---~~~f~~~g~i~~~~i~~~~~--~~-~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~ 85 (115)
..+||-+|+.......+ .++|.+||.+..+.+-.++. .+ ....-++|.|...++|..|+...+|...+++.+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 45677788876644433 46788888888887655442 01 1122489999999999999999999988887644
No 134
>KOG2193|consensus
Probab=93.17 E-value=0.13 Score=37.49 Aligned_cols=67 Identities=21% Similarity=0.244 Sum_probs=49.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcC--CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCC-CCCceeeEE
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYG--KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPC-PTDYQSSIL 87 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g--~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~-~~~~~~~v~ 87 (115)
.++|++||.+.++..++..+|.... .-..+.+ ..||+|+.+.+..-|.++.+.+++.. +-|.+..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~--------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~ 71 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVE 71 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee--------ecceeeccCCchhhhhhhHHhhchhhhhcCceeecc
Confidence 4689999999999999999987541 1111111 24799999999999999999999875 444444443
No 135
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.93 E-value=1.2 Score=27.95 Aligned_cols=61 Identities=20% Similarity=0.175 Sum_probs=45.4
Q ss_pred CCCCEEEEcCCCCCCCHH----HHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCC
Q psy3928 10 KYGRVVLKEKLPPEAEHD----YIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNP 77 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~----~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~ 77 (115)
..-.+|.|.=|..++... .+...++.||+|..+.+ .|+. -|.|.|.+..+|=.|+.+++..
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-----cGrq--savVvF~d~~SAC~Av~Af~s~ 148 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-----CGRQ--SAVVVFKDITSACKAVSAFQSR 148 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-----cCCc--eEEEEehhhHHHHHHHHhhcCC
Confidence 445678888777666442 35556678999998865 3443 6999999999999999998864
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.30 E-value=0.35 Score=31.47 Aligned_cols=59 Identities=20% Similarity=0.090 Sum_probs=41.8
Q ss_pred HHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhC--CCCCCCceeeEEEee
Q psy3928 26 HDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGL--NPCPTDYQSSILTTT 90 (115)
Q Consensus 26 ~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~--~~~~~~~~~~v~~~~ 90 (115)
...|+++|..++.+..+..+.. -+-..|.|.+.+.|.++...|+ +..+.|..+++.+..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 3678999999997766654432 2357899999999999999999 888888888887663
No 137
>KOG4210|consensus
Probab=92.12 E-value=0.17 Score=35.22 Aligned_cols=73 Identities=16% Similarity=0.062 Sum_probs=56.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCce
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQ 83 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 83 (115)
...+.|++++...+.+.....++...|......+........+++++.+.|...+.+..++.......+.+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~ 159 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNK 159 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccccccc
Confidence 4578899999999888877788888886666555554557788899999999999999999866654544443
No 138
>KOG4285|consensus
Probab=91.48 E-value=1.3 Score=31.03 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=46.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCc
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDY 82 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~ 82 (115)
..=|-|-++|+. .-..+...|.+||.|...... ....+-+|.|.+..+|++||. .+|+.|++.
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 344566688886 446788999999988775432 223488999999999999998 477766664
No 139
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.80 E-value=1.7 Score=23.77 Aligned_cols=58 Identities=17% Similarity=0.104 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHhhhcC-----CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 22 PEAEHDYIESVFSKYG-----KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 22 ~~~~~~~l~~~f~~~g-----~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
..++..+|..++..-+ .|-.+.+..+ |+||+... +.|+.++..|++..+.|+.+.+..
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 4567778888887654 3445665432 88999887 478899999999999999888764
No 140
>KOG2253|consensus
Probab=90.79 E-value=0.27 Score=37.64 Aligned_cols=68 Identities=19% Similarity=0.154 Sum_probs=56.7
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCcee
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQS 84 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~ 84 (115)
..+...++||+|+...+....++.++..+|.+..+... . |+|.+|.++.....++..++-..+++..+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~--~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD--K-------FGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh--h-------hcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 34566799999999999999999999999977665332 1 89999999999999999999888877654
No 141
>KOG4483|consensus
Probab=88.68 E-value=1.6 Score=31.88 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=48.0
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCC-eEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHh
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGK-VTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~-i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 73 (115)
.+-.+.|-|-++|......+|...|..|+. ...++|+-+. ++|..|.+...|..||..
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 345688889999999888999999999973 4567777654 899999999999999975
No 142
>KOG2591|consensus
Probab=87.59 E-value=2.6 Score=32.10 Aligned_cols=59 Identities=14% Similarity=0.247 Sum_probs=45.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhh--cCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCC
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSK--YGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~--~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~ 76 (115)
+.++|.++-||..+..++++.+|.. +-.+-.|.+-.+. -=||.|.+..+|+.|.+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHH
Confidence 4578999999999999999999976 4445555443332 358999999999999876543
No 143
>KOG4410|consensus
Probab=87.54 E-value=2.1 Score=29.94 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=34.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCe-EEEEeceeCCCCCeeeEEEEEecCH
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKV-TYVSLPKFKSTGKLKGFAFVEFSTK 64 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i-~~~~i~~~~~~~~~~g~~fv~f~~~ 64 (115)
.-|+++||+.++.-.+|+.-+...+.+ ..+.+ ..+.|-||+.|-+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 459999999999999999999988743 33443 12356799999654
No 144
>KOG2318|consensus
Probab=86.70 E-value=10 Score=29.16 Aligned_cols=76 Identities=13% Similarity=0.056 Sum_probs=56.1
Q ss_pred cCCCCEEEEcCCCCC-CCHHHHHHHhhhc----CCeEEEEeceeCC----------CCC---------------------
Q psy3928 9 KKYGRVVLKEKLPPE-AEHDYIESVFSKY----GKVTYVSLPKFKS----------TGK--------------------- 52 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~-~~~~~l~~~f~~~----g~i~~~~i~~~~~----------~~~--------------------- 52 (115)
....+.|-|-|+.|+ +...+|..+|.+| |.|..|.|..... .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345678999999986 6778898888876 4677777643210 011
Q ss_pred ----------------eeeEEEEEecCHHHHHHHHHhhCCCCCCCcee
Q psy3928 53 ----------------LKGFAFVEFSTKEEATKALELGLNPCPTDYQS 84 (115)
Q Consensus 53 ----------------~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~ 84 (115)
...||.|+|.+...|...+..|+|..+.....
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~ 298 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSAN 298 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccc
Confidence 13589999999999999999999998766543
No 145
>KOG4574|consensus
Probab=85.65 E-value=0.87 Score=36.13 Aligned_cols=76 Identities=20% Similarity=0.117 Sum_probs=58.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCC--CCCceeeEEEeee
Q psy3928 14 VVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPC--PTDYQSSILTTTS 91 (115)
Q Consensus 14 ~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~--~~~~~~~v~~~~~ 91 (115)
+.++.|.+-..+...|-.++..||.+.....+++ ..++.|+|...+.|-.|+.+++|.. ..|-+.+|..++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3445566666777778999999999988776654 2489999999999999999999986 4456667777776
Q ss_pred cccc
Q psy3928 92 RLSF 95 (115)
Q Consensus 92 ~~~~ 95 (115)
...+
T Consensus 374 ~~~~ 377 (1007)
T KOG4574|consen 374 LPMY 377 (1007)
T ss_pred cccc
Confidence 5444
No 146
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=81.91 E-value=3 Score=22.73 Aligned_cols=61 Identities=11% Similarity=0.075 Sum_probs=40.4
Q ss_pred HHHHHHhhhcC-CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 27 DYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 27 ~~l~~~f~~~g-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
.+|.+-|...| ++..+..+..++++.+...-+|+.....+... .++-..+.+..+.|....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 35677787777 77888888888777888888888876443332 344445566666655443
No 147
>KOG4019|consensus
Probab=80.72 E-value=5 Score=26.18 Aligned_cols=73 Identities=12% Similarity=0.046 Sum_probs=48.1
Q ss_pred CCCEEEEcCCCCCCCH-----HHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCc-ee
Q psy3928 11 YGRVVLKEKLPPEAEH-----DYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDY-QS 84 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~-----~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~-~~ 84 (115)
-...+.+.+++..+-. .....+|.++.......+.+. .+..-|.|.++..|..|...++...+.+. .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 3455777777755422 224566666655544444432 34567899999999999999999999998 44
Q ss_pred eEEEe
Q psy3928 85 SILTT 89 (115)
Q Consensus 85 ~v~~~ 89 (115)
....+
T Consensus 83 k~yfa 87 (193)
T KOG4019|consen 83 KLYFA 87 (193)
T ss_pred EEEEc
Confidence 44333
No 148
>KOG4676|consensus
Probab=76.49 E-value=0.5 Score=34.24 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=44.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHh
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 73 (115)
++++|++|+..+...++.+.|..+|.+....+- .+-..-+|-++|.......-|++.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~ 208 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRS 208 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHh
Confidence 679999999999999999999999988765542 333344777899888887777774
No 149
>KOG2135|consensus
Probab=73.96 E-value=2.1 Score=31.83 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=47.8
Q ss_pred cCCCCCC-CHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 18 EKLPPEA-EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 18 ~~l~~~~-~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
.-.|... +.++|...|++||.|..+.+-.. .-.|.|+|.+..+|-.|.. ..+..++++.+.+.--.
T Consensus 378 ek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 378 EKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred hccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 3344443 44779999999999998877443 3478999999999877765 56777888877665433
No 150
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=70.73 E-value=20 Score=21.49 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=27.0
Q ss_pred CCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEec-CHHHHHHHHH
Q psy3928 24 AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFS-TKEEATKALE 72 (115)
Q Consensus 24 ~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~-~~~~a~~al~ 72 (115)
++...|++.|+.|.+.+ ++.+.++ ...+|++.|.|. +-.....|+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 35577999999998664 4455554 366889999996 5555555554
No 151
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=70.46 E-value=15 Score=19.79 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=35.5
Q ss_pred CCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCC
Q psy3928 24 AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPT 80 (115)
Q Consensus 24 ~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~ 80 (115)
++-.+++.-|..|+ ...+. .++ + .-||.|.+..+|++|....++..+-
T Consensus 12 ~~v~d~K~~Lr~y~-~~~I~--~d~-t-----GfYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 12 VTVEDFKKRLRKYR-WDRIR--DDR-T-----GFYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred ccHHHHHHHHhcCC-cceEE--ecC-C-----EEEEEECChHHHHHHHHhcCCCEEE
Confidence 45678999999996 44433 222 3 3489999999999999999987543
No 152
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=64.69 E-value=17 Score=19.57 Aligned_cols=60 Identities=17% Similarity=0.133 Sum_probs=36.6
Q ss_pred HHHHHHhhhcC-CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 27 DYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 27 ~~l~~~f~~~g-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
++|.+-|...| .+..+.-+..+.+..+....||+.....+.. +.++=..+.+..+.+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecC
Confidence 35666777666 6777776766666777788999887654422 233333444555555443
No 153
>KOG4454|consensus
Probab=63.77 E-value=1.9 Score=29.03 Aligned_cols=70 Identities=21% Similarity=0.287 Sum_probs=51.7
Q ss_pred ccCCCCEEEEcC----CCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCC
Q psy3928 8 NKKYGRVVLKEK----LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPC 78 (115)
Q Consensus 8 ~~~~~~~l~V~~----l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 78 (115)
++....+++-|+ |...+++..+...|.+-+.+..+++..+. .+.++.+.|+.+.-......+++..++..
T Consensus 76 ~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 76 EDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred cchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 344455666676 66777888888888888888888887765 47777888888877777777777666654
No 154
>KOG2891|consensus
Probab=63.31 E-value=11 Score=26.36 Aligned_cols=35 Identities=17% Similarity=0.396 Sum_probs=27.1
Q ss_pred CCCEEEEcCCCC------------CCCHHHHHHHhhhcCCeEEEEec
Q psy3928 11 YGRVVLKEKLPP------------EAEHDYIESVFSKYGKVTYVSLP 45 (115)
Q Consensus 11 ~~~~l~V~~l~~------------~~~~~~l~~~f~~~g~i~~~~i~ 45 (115)
.+-+||+.++|- -.+++-|+..|..||.|..+.|+
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 356888888873 24567799999999999888764
No 155
>COG3214 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.50 E-value=2.9 Score=30.14 Aligned_cols=15 Identities=47% Similarity=0.917 Sum_probs=11.8
Q ss_pred CCCCCCcceEEeeec
Q psy3928 99 PLGFESGGWWFKSSH 113 (115)
Q Consensus 99 ~~~~~~~g~~~~~~~ 113 (115)
....++||||+++.|
T Consensus 146 ~~~k~aggWW~Ws~~ 160 (400)
T COG3214 146 GRGKGAGGWWGWSPH 160 (400)
T ss_pred ccCccCCCccCCCch
Confidence 445678999999876
No 156
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=60.50 E-value=25 Score=18.77 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=15.2
Q ss_pred HHHHHHhhhcCCeEEEEe
Q psy3928 27 DYIESVFSKYGKVTYVSL 44 (115)
Q Consensus 27 ~~l~~~f~~~g~i~~~~i 44 (115)
.+|+++|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 469999999999887765
No 157
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=57.21 E-value=20 Score=23.36 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=32.8
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeC
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFK 48 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~ 48 (115)
.......+++.+++..+....+...|..+|.+....+....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 34456788999999999999999999999988666554443
No 158
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=56.23 E-value=8 Score=22.11 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=20.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhh
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFS 34 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~ 34 (115)
.-..++|-|.|||...+++.|++.+.
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34568899999999999998875543
No 159
>KOG2193|consensus
Probab=56.22 E-value=0.44 Score=34.92 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=55.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
+++-+.|+|+....+.+..++..||.+..|..+. +..-.-..-+.|...+.+..++..++|..+......+.+.
T Consensus 81 rk~Qirnippql~wevld~Ll~qyg~ve~~eqvn---t~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 81 RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN---TDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc---cchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 5577889999999999999999999887764422 1111123446788999999999999999888776665543
No 160
>KOG2295|consensus
Probab=50.78 E-value=1.8 Score=32.84 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=47.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCC
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTD 81 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~ 81 (115)
.+.+|+.+++++++-.+|..+...+.....+.+...-..........|.|.--.....|+-+||+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 3678899999999999999988877655555443221112223456788876677777888888765443
No 161
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=49.86 E-value=39 Score=19.23 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=26.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEe
Q psy3928 14 VVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61 (115)
Q Consensus 14 ~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f 61 (115)
-+|||+++..+-+.--..+.+..+....+-+... ....||.|-..
T Consensus 27 GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~ 71 (86)
T PF09707_consen 27 GVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTL 71 (86)
T ss_pred CcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEe
Confidence 4899999988776644444444444444333322 22678888776
No 162
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=48.16 E-value=30 Score=24.17 Aligned_cols=22 Identities=41% Similarity=0.532 Sum_probs=18.8
Q ss_pred EEEEecCHHHHHHHHHhhCCCC
Q psy3928 57 AFVEFSTKEEATKALELGLNPC 78 (115)
Q Consensus 57 ~fv~f~~~~~a~~al~~l~~~~ 78 (115)
|||.|.+..+|+.+++.+....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 6999999999999999766543
No 163
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=45.56 E-value=29 Score=19.35 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=21.5
Q ss_pred CeeeEEEEEecCHHHHHHHHHhhCCC
Q psy3928 52 KLKGFAFVEFSTKEEATKALELGLNP 77 (115)
Q Consensus 52 ~~~g~~fv~f~~~~~a~~al~~l~~~ 77 (115)
.-+||-|||-.+..++..|++.+.+.
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CCceEEEEEeCCHHHHHHHHhcccce
Confidence 35789999999999999999877753
No 164
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=35.43 E-value=70 Score=18.68 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=25.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhh-hcCCeEEEEeceeCCCCCeeeEEEEEecC
Q psy3928 14 VVLKEKLPPEAEHDYIESVFS-KYGKVTYVSLPKFKSTGKLKGFAFVEFST 63 (115)
Q Consensus 14 ~l~V~~l~~~~~~~~l~~~f~-~~g~i~~~~i~~~~~~~~~~g~~fv~f~~ 63 (115)
-+|||+++..+-+. |.+... .++....+ +.. +.+ ...||.|-.+-.
T Consensus 29 GVyVg~~S~rVRd~-lW~~v~~~~~~G~av-mv~-~~~-~eqG~~~~t~G~ 75 (97)
T PRK11558 29 GVYVGDVSRRIREM-IWQQVTQLAEEGNVV-MAW-ATN-TESGFEFQTFGE 75 (97)
T ss_pred CcEEcCCCHHHHHH-HHHHHHHhCCCCcEE-EEE-cCC-CCCCcEEEecCC
Confidence 48999888877655 444443 34443333 233 223 334888877764
No 165
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=35.21 E-value=1.3e+02 Score=21.39 Aligned_cols=57 Identities=19% Similarity=0.245 Sum_probs=40.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCC-------CCCeeeEEEEEecCHHHHH
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKS-------TGKLKGFAFVEFSTKEEAT 68 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~-------~~~~~g~~fv~f~~~~~a~ 68 (115)
.+.+...|+..+++-..+...|..||+|..+.+..+.. ..+...-..+.|-+...+-
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 45677889999998888999999999999998876541 1122345667776665543
No 166
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.54 E-value=65 Score=17.26 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.8
Q ss_pred EEEEEecCHHHHHHHHHhhCCCCC
Q psy3928 56 FAFVEFSTKEEATKALELGLNPCP 79 (115)
Q Consensus 56 ~~fv~f~~~~~a~~al~~l~~~~~ 79 (115)
+.++.|.+..+|.++-+.+....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 678999999999999998887654
No 167
>KOG1295|consensus
Probab=29.44 E-value=79 Score=23.17 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=47.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCC-eEEEEeceeCCC--CCeeeEEEEEecCHHHHHHHHHhhCCCCCCC
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGK-VTYVSLPKFKST--GKLKGFAFVEFSTKEEATKALELGLNPCPTD 81 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~-i~~~~i~~~~~~--~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~ 81 (115)
....+.|..||+..++..+.+-+.++-. +....+.....+ ....+.++|.|...++.......++|+.+-.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 3467889999999999998888877632 211112111101 1124578999999999999999999886443
No 168
>KOG4008|consensus
Probab=27.43 E-value=68 Score=22.02 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=26.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEE
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTY 41 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~ 41 (115)
.....+|+-|+|...+++.|.++..+.|-+..
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 34567999999999999999999999874443
No 169
>smart00186 FBG Fibrinogen-related domains (FReDs). Domain present at the C-termini of fibrinogen beta and gamma chains, and a variety of fibrinogen-related proteins, including tenascin and Drosophila scabrous.
Probab=27.11 E-value=27 Score=23.33 Aligned_cols=12 Identities=42% Similarity=1.448 Sum_probs=9.1
Q ss_pred CCcceEEeeecC
Q psy3928 103 ESGGWWFKSSHE 114 (115)
Q Consensus 103 ~~~g~~~~~~~~ 114 (115)
..||||+.++++
T Consensus 162 ~~gGWWy~~C~~ 173 (212)
T smart00186 162 YGGGWWYNNCHA 173 (212)
T ss_pred CCCCEeCCCCCC
Confidence 468999987764
No 170
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=25.82 E-value=1.4e+02 Score=16.91 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=40.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhh-cC-CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhh
Q psy3928 14 VVLKEKLPPEAEHDYIESVFSK-YG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELG 74 (115)
Q Consensus 14 ~l~V~~l~~~~~~~~l~~~f~~-~g-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 74 (115)
..|+.-.+...+..++++.++. |+ .+..+.....+ .+ ..-|+|.+.....|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KG--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--cEEEEEEeCCCCcHHHHHHhh
Confidence 3455566888899999998887 66 56666555443 22 236999999888888776544
No 171
>KOG2579|consensus
Probab=24.60 E-value=28 Score=24.99 Aligned_cols=13 Identities=38% Similarity=1.257 Sum_probs=10.2
Q ss_pred CCCcceEEeeecC
Q psy3928 102 FESGGWWFKSSHE 114 (115)
Q Consensus 102 ~~~~g~~~~~~~~ 114 (115)
...||||+.++|.
T Consensus 279 ~~~GgWWy~~C~~ 291 (338)
T KOG2579|consen 279 SYKGGWWYNNCHA 291 (338)
T ss_pred cCCCccccccccc
Confidence 4579999998774
No 172
>cd00087 FReD Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular arrangement called the disulfide knot. The C termini of fibrinogen chains end in globular domains, which are not completely equivalent. C terminal globular domains of the gamma chains (C-gamma) dimerize and bind to the GPR motif of the N-terminal domain of the alpha chain, while the GHR motif of N-terminal domain of the beta chain binds to the C terminal globular domains of another beta chain (C-beta), which leads to lattice formation.
Probab=24.39 E-value=28 Score=23.33 Aligned_cols=12 Identities=58% Similarity=1.534 Sum_probs=9.2
Q ss_pred CCcceEEeeecC
Q psy3928 103 ESGGWWFKSSHE 114 (115)
Q Consensus 103 ~~~g~~~~~~~~ 114 (115)
..||||+.+++.
T Consensus 162 ~~gGWWy~~C~~ 173 (215)
T cd00087 162 YSGGWWYNSCHA 173 (215)
T ss_pred CCcCCcCCCCCC
Confidence 479999987653
No 173
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=24.06 E-value=1.5e+02 Score=20.61 Aligned_cols=27 Identities=7% Similarity=0.031 Sum_probs=21.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCe
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKV 39 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i 39 (115)
....|+|||..++..-+.+++...-.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 356699999999999888888875444
No 174
>PRK10905 cell division protein DamX; Validated
Probab=23.70 E-value=2.9e+02 Score=19.98 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=35.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCe-eeEEEEEecCHHHHHHHHHhhCCC
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALELGLNP 77 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~-~g~~fv~f~~~~~a~~al~~l~~~ 77 (115)
.+|-|+.+. +++.+..+..+.+ +....+.....+|+. .-..+-.|.+.++|++|+..|-..
T Consensus 248 YTLQL~A~S---s~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 248 YTLQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred eEEEEEecC---CHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 455454443 4566777777765 222222222225553 234555889999999999987653
No 175
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=23.32 E-value=82 Score=19.16 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHhhh---cCCeEEEEeceeCCCCCeeeEEEEEecCH
Q psy3928 21 PPEAEHDYIESVFSK---YGKVTYVSLPKFKSTGKLKGFAFVEFSTK 64 (115)
Q Consensus 21 ~~~~~~~~l~~~f~~---~g~i~~~~i~~~~~~~~~~g~~fv~f~~~ 64 (115)
|...+..+++++|+. |..|.+-.+.++-....+-..||..|...
T Consensus 83 PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 83 PYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 557788999999974 55565545555533344556889888754
No 176
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=23.07 E-value=1.1e+02 Score=14.95 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=20.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCe
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKV 39 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i 39 (115)
..+++.+.........|.+++..+|..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 456777776567888899999998864
No 177
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=23.06 E-value=2.3e+02 Score=22.34 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHhhhcCCeEE-----EEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 22 PEAEHDYIESVFSKYGKVTY-----VSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 22 ~~~~~~~l~~~f~~~g~i~~-----~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..++...|...+..-+.+.. +.|. ..|.||+... ..+...+..|++..+.|+.+.+..+.
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 44566666666665443432 3332 2378998876 55888999999999999998877654
No 178
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=22.68 E-value=31 Score=18.62 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=13.7
Q ss_pred CCCEEEEcCCCCCCCHHH
Q psy3928 11 YGRVVLKEKLPPEAEHDY 28 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~ 28 (115)
..+.+|+|++|..+-.+.
T Consensus 26 tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred cCceEEECCCChHHHHcC
Confidence 457899999998765544
No 179
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=22.32 E-value=2.7e+02 Score=19.19 Aligned_cols=61 Identities=18% Similarity=0.191 Sum_probs=38.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCC-eEEEEeceeCC---CCCeeeEEEEEecCHHHHHHHHHh
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGK-VTYVSLPKFKS---TGKLKGFAFVEFSTKEEATKALEL 73 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~-i~~~~i~~~~~---~~~~~g~~fv~f~~~~~a~~al~~ 73 (115)
+-++-|.-+|-...++-++++|++.|- +..-.+..+.. =|.+ .|..+......-.+.++..
T Consensus 118 pL~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S-~y~~l~L~g~~rl~daL~H 182 (245)
T PF12623_consen 118 PLEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDS-RYVDLTLTGTVRLADALNH 182 (245)
T ss_pred ceEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCC-cceEEEEeeeEEHHHHHhh
Confidence 456778888888889999999999984 44334444432 1333 3666666554445555543
No 180
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=22.13 E-value=1.6e+02 Score=16.33 Aligned_cols=58 Identities=19% Similarity=0.127 Sum_probs=40.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhh-cC-CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhh
Q psy3928 14 VVLKEKLPPEAEHDYIESVFSK-YG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELG 74 (115)
Q Consensus 14 ~l~V~~l~~~~~~~~l~~~f~~-~g-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l 74 (115)
..|+...+...+..++++.++. |+ .+..+.....+ .+ ..-|||.+...+.|......+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RG--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CC--ceEEEEEECCCCcHHHHHHhh
Confidence 3566677889999999998887 66 55666554433 22 236999998877777665543
No 181
>PF00147 Fibrinogen_C: Fibrinogen beta and gamma chains, C-terminal globular domain Fibrinopeptides not included.; InterPro: IPR002181 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the C-terminal globular D domain of the alpha, beta and gamma chains. These domains are related to domains in other proteins: in the Parastichopus parvimensis (Sea cucumber) fibrogen-like FreP-A and FreP-B proteins; in the C terminus of the Drosophila scabrous protein that is involved in the regulation of neurogenesis, possibly through the inhibition of R8 cell differentiation; and in ficolin proteins, which display lectin activity towards N-acetylglucosamine through their fibrogen-like domains []. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0007165 signal transduction; PDB: 2J60_C 2J5Z_B 2J64_C 2J1G_E 2J2P_E 2J3U_B 2J3F_C 2J3O_A 2J0G_B 2J0H_E ....
Probab=21.83 E-value=39 Score=22.88 Aligned_cols=10 Identities=40% Similarity=1.581 Sum_probs=7.8
Q ss_pred CcceEEeeec
Q psy3928 104 SGGWWFKSSH 113 (115)
Q Consensus 104 ~~g~~~~~~~ 113 (115)
.+|||+.+++
T Consensus 177 ~gGWWy~~C~ 186 (235)
T PF00147_consen 177 GGGWWYNNCG 186 (235)
T ss_dssp TSEBCESSST
T ss_pred cCCEeeeccc
Confidence 4799998765
No 182
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=21.62 E-value=1e+02 Score=21.01 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=19.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhh
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFS 34 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~ 34 (115)
...++|+|||...+..-|.+++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 45688999999999888888887
No 183
>PF15063 TC1: Thyroid cancer protein 1
Probab=21.32 E-value=59 Score=18.09 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=22.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeE
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVT 40 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~ 40 (115)
++--+.|+-.++....|+.+|..-|..+
T Consensus 26 RKkasaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 26 RKKASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred hhhhhhhhhhccCHHHHHHHHHHccchh
Confidence 4445678888999999999999998654
No 184
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=20.95 E-value=1.6e+02 Score=16.78 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=24.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhc--CCeEEEEeceeCCCCCeeeEEEEEecC
Q psy3928 14 VVLKEKLPPEAEHDYIESVFSKY--GKVTYVSLPKFKSTGKLKGFAFVEFST 63 (115)
Q Consensus 14 ~l~V~~l~~~~~~~~l~~~f~~~--g~i~~~~i~~~~~~~~~~g~~fv~f~~ 63 (115)
-+|||+++..+.+. |.+...+. +... +.+... +....||.|-.+-.
T Consensus 27 GVyVg~~s~rVRe~-lW~~v~~~~~~~G~-avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 27 GVYVGGVSASVRER-IWDYLAQHCPPKGS-LVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CcEEcCCCHHHHHH-HHHHHHHhCCCCcc-EEEEEe--CCCCCCcEEEecCC
Confidence 48999888877654 44444433 3322 222222 23345677766643
No 185
>PF02946 GTF2I: GTF2I-like repeat; InterPro: IPR004212 This region of sequence similarity is found up to six times in a variety of proteins including general transcription factor II-I (GTF2I). It has been suggested that this may be a DNA binding domain [, ].; PDB: 2E3L_A 2D99_A 2DN4_A 2D9B_A 2EJE_A 1Q60_A 2DZR_A 2DN5_A 2DZQ_A 2ED2_A.
Probab=20.91 E-value=1.1e+02 Score=17.06 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=18.0
Q ss_pred CCCEEEEcCCCCCCC--------HHHHHHHhhhcCCeEEE
Q psy3928 11 YGRVVLKEKLPPEAE--------HDYIESVFSKYGKVTYV 42 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~--------~~~l~~~f~~~g~i~~~ 42 (115)
++..++|.|||.++. ...|+.+++.-..|..+
T Consensus 33 ~p~~v~V~GLPegi~fr~P~~Y~i~~L~~IL~~~~~I~Fv 72 (76)
T PF02946_consen 33 DPEAVYVQGLPEGIPFRRPSNYGIPRLEKILEASSRIRFV 72 (76)
T ss_dssp TTTTEEEES--TT--SS-TTTS-HHHHHHHHHTTTT-EEE
T ss_pred CCCcEEEEeCCCCCcCCCCCcCCHHHHHHHHHccCCcEEE
Confidence 345689999987553 34577777766666553
No 186
>PHA01632 hypothetical protein
Probab=20.81 E-value=1.3e+02 Score=15.64 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=14.9
Q ss_pred EcCCCCCCCHHHHHHHhhh
Q psy3928 17 KEKLPPEAEHDYIESVFSK 35 (115)
Q Consensus 17 V~~l~~~~~~~~l~~~f~~ 35 (115)
|...|...++++|++.+.+
T Consensus 21 ieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 21 IEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred hhhcCCCCCHHHHHHHHHH
Confidence 4578999999998877654
No 187
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=20.76 E-value=85 Score=14.77 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=9.5
Q ss_pred CCCCHHHHHHHhhhcC
Q psy3928 22 PEAEHDYIESVFSKYG 37 (115)
Q Consensus 22 ~~~~~~~l~~~f~~~g 37 (115)
.++++.+|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3568888999987654
No 188
>KOG0156|consensus
Probab=20.72 E-value=3.7e+02 Score=20.45 Aligned_cols=58 Identities=22% Similarity=0.187 Sum_probs=39.2
Q ss_pred EEcCCCCCC---CHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCce
Q psy3928 16 LKEKLPPEA---EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQ 83 (115)
Q Consensus 16 ~V~~l~~~~---~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 83 (115)
+||||+.-. ....+.++-.+||++-.+++-. .-.|..++.+.|+.++.. ++..+.++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~-~d~~fa~Rp 96 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVK-QDLEFADRP 96 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHh-CCccccCCC
Confidence 466665432 3345667767899999887732 247888888999999985 455555554
Done!