Query psy3928
Match_columns 115
No_of_seqs 102 out of 1384
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 20:57:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1.2E-22 4.1E-27 118.4 10.8 83 9-91 16-98 (99)
2 2dnz_A Probable RNA-binding pr 99.9 6.1E-21 2.1E-25 110.0 12.5 86 10-95 3-88 (95)
3 2dhg_A TRNA selenocysteine ass 99.9 7.6E-21 2.6E-25 111.3 11.8 94 9-103 6-101 (104)
4 3s8s_A Histone-lysine N-methyl 99.9 5.2E-21 1.8E-25 113.5 10.9 82 10-91 4-85 (110)
5 1x5s_A Cold-inducible RNA-bind 99.9 1E-20 3.5E-25 110.4 11.9 86 9-94 9-94 (102)
6 2dgs_A DAZ-associated protein 99.9 1.4E-20 4.9E-25 109.3 12.2 87 8-95 6-92 (99)
7 1whw_A Hypothetical protein ri 99.9 1.1E-20 3.8E-25 109.7 11.6 86 9-94 5-90 (99)
8 2dnm_A SRP46 splicing factor; 99.9 5.8E-21 2E-25 111.7 10.4 87 8-94 9-95 (103)
9 2dgp_A Bruno-like 4, RNA bindi 99.9 1.3E-20 4.4E-25 110.7 11.3 88 7-94 8-98 (106)
10 2cpz_A CUG triplet repeat RNA- 99.9 9.8E-21 3.3E-25 112.8 10.7 87 8-94 21-107 (115)
11 1u6f_A Tcubp1, RNA-binding pro 99.9 1.7E-20 5.8E-25 115.0 12.0 86 9-94 39-124 (139)
12 3p5t_L Cleavage and polyadenyl 99.9 1.7E-21 5.9E-26 111.5 6.9 82 13-94 2-85 (90)
13 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.5E-20 5.1E-25 106.7 10.6 83 10-92 4-86 (87)
14 2cph_A RNA binding motif prote 99.9 2.6E-20 8.9E-25 109.5 11.9 88 8-95 11-100 (107)
15 1x5u_A Splicing factor 3B subu 99.8 2.1E-20 7.3E-25 109.5 11.4 87 7-93 10-96 (105)
16 2cq0_A Eukaryotic translation 99.8 1.3E-20 4.5E-25 110.2 10.3 87 8-94 11-97 (103)
17 1x4h_A RNA-binding protein 28; 99.8 1.9E-20 6.7E-25 110.7 11.1 88 8-95 11-104 (111)
18 2jrs_A RNA-binding protein 39; 99.8 2.2E-20 7.4E-25 110.4 11.1 85 8-92 22-106 (108)
19 2cpf_A RNA binding motif prote 99.8 1.5E-20 5.1E-25 108.9 10.1 86 10-95 3-91 (98)
20 3md1_A Nuclear and cytoplasmic 99.8 2.7E-20 9.4E-25 104.7 10.6 80 13-92 2-81 (83)
21 2fy1_A RNA-binding motif prote 99.8 3.7E-20 1.3E-24 110.6 11.6 85 9-94 4-88 (116)
22 3ns6_A Eukaryotic translation 99.8 4.8E-21 1.6E-25 111.7 7.4 85 10-94 4-95 (100)
23 2d9p_A Polyadenylate-binding p 99.8 5.5E-20 1.9E-24 107.5 12.0 85 8-94 11-95 (103)
24 2dng_A Eukaryotic translation 99.8 3.9E-20 1.3E-24 108.1 11.3 85 8-94 11-95 (103)
25 2dgo_A Cytotoxic granule-assoc 99.8 6.4E-20 2.2E-24 109.2 12.3 86 8-93 11-96 (115)
26 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.7E-20 9.3E-25 105.1 10.2 81 9-89 4-84 (85)
27 2cpe_A RNA-binding protein EWS 99.8 1.5E-20 5.3E-25 111.5 9.5 90 6-95 9-106 (113)
28 2do4_A Squamous cell carcinoma 99.8 3.7E-20 1.3E-24 107.7 10.9 85 8-93 13-97 (100)
29 1p27_B RNA-binding protein 8A; 99.8 5.6E-20 1.9E-24 107.9 11.8 83 10-92 21-103 (106)
30 2lxi_A RNA-binding protein 10; 99.8 2.1E-21 7.1E-26 111.5 5.4 80 13-92 2-83 (91)
31 1x5t_A Splicing factor 3B subu 99.8 1.8E-20 6.2E-25 108.1 9.4 85 10-94 3-88 (96)
32 3ex7_B RNA-binding protein 8A; 99.8 4E-20 1.4E-24 111.6 11.0 86 9-94 19-104 (126)
33 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.4E-20 4.7E-25 109.8 8.6 86 9-94 9-94 (102)
34 2lkz_A RNA-binding protein 5; 99.8 7E-21 2.4E-25 110.2 7.0 83 9-91 6-94 (95)
35 1wi8_A EIF-4B, eukaryotic tran 99.8 4.3E-20 1.5E-24 108.2 10.3 86 8-95 11-97 (104)
36 2la6_A RNA-binding protein FUS 99.8 8.7E-20 3E-24 106.0 11.4 82 8-89 9-98 (99)
37 2dnh_A Bruno-like 5, RNA bindi 99.8 1.6E-19 5.5E-24 105.8 12.5 84 9-93 12-98 (105)
38 2x1f_A MRNA 3'-END-processing 99.8 5E-20 1.7E-24 106.4 10.2 83 12-94 2-84 (96)
39 2cqd_A RNA-binding region cont 99.8 7.4E-20 2.5E-24 109.1 10.6 85 7-92 12-96 (116)
40 2div_A TRNA selenocysteine ass 99.8 7E-20 2.4E-24 106.3 10.0 83 9-91 6-93 (99)
41 1oo0_B CG8781-PA, drosophila Y 99.8 9.2E-20 3.1E-24 107.7 10.1 84 9-92 23-106 (110)
42 2cqg_A TDP-43, TAR DNA-binding 99.8 1.4E-19 4.7E-24 105.8 10.8 90 7-98 10-99 (103)
43 3n9u_C Cleavage and polyadenyl 99.8 7.3E-20 2.5E-24 114.6 10.1 81 11-91 54-136 (156)
44 2cq3_A RNA-binding protein 9; 99.8 2E-19 6.9E-24 105.0 11.4 87 7-95 10-96 (103)
45 4f25_A Polyadenylate-binding p 99.8 1.1E-19 3.6E-24 108.4 10.3 79 12-92 5-83 (115)
46 2cqc_A Arginine/serine-rich sp 99.8 6.3E-20 2.1E-24 105.6 8.9 82 9-90 12-93 (95)
47 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.8E-19 6.3E-24 112.4 11.7 83 10-92 37-119 (156)
48 1p1t_A Cleavage stimulation fa 99.8 3E-20 1E-24 108.7 7.5 84 9-92 5-88 (104)
49 2dh8_A DAZ-associated protein 99.8 4.4E-20 1.5E-24 108.2 8.2 86 8-94 12-97 (105)
50 4a8x_A RNA-binding protein wit 99.8 1E-19 3.5E-24 103.3 9.3 81 11-91 3-84 (88)
51 2e5h_A Zinc finger CCHC-type a 99.8 6.8E-20 2.3E-24 105.3 8.6 82 8-89 12-93 (94)
52 2m2b_A RNA-binding protein 10; 99.8 4.5E-20 1.5E-24 112.3 7.8 85 8-93 19-109 (131)
53 3ulh_A THO complex subunit 4; 99.8 2.4E-19 8.3E-24 105.3 10.7 82 8-90 25-106 (107)
54 3s7r_A Heterogeneous nuclear r 99.8 1.8E-19 6.1E-24 102.3 9.8 81 7-88 6-86 (87)
55 2khc_A Testis-specific RNP-typ 99.8 8.4E-20 2.9E-24 109.1 8.5 81 9-89 37-117 (118)
56 3ucg_A Polyadenylate-binding p 99.8 1.2E-19 3.9E-24 103.3 8.7 80 11-91 5-84 (89)
57 2ywk_A Putative RNA-binding pr 99.8 1.6E-19 5.4E-24 104.0 9.3 82 8-90 12-93 (95)
58 2kxn_B Transformer-2 protein h 99.8 1.1E-19 3.7E-24 110.5 8.8 84 9-92 43-126 (129)
59 1s79_A Lupus LA protein; RRM, 99.8 1.5E-19 5E-24 106.0 9.0 80 9-90 8-87 (103)
60 2do0_A HnRNP M, heterogeneous 99.8 7E-19 2.4E-23 104.4 12.1 83 8-91 11-93 (114)
61 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.1E-19 1E-23 104.3 10.3 85 7-93 10-94 (103)
62 2kn4_A Immunoglobulin G-bindin 99.8 2.8E-19 9.5E-24 111.7 10.7 84 10-93 68-151 (158)
63 2dgv_A HnRNP M, heterogeneous 99.8 6.5E-19 2.2E-23 100.8 11.3 82 9-92 5-86 (92)
64 2lcw_A RNA-binding protein FUS 99.7 1.4E-21 4.9E-26 116.6 0.0 88 7-94 2-97 (116)
65 1x5o_A RNA binding motif, sing 99.8 6.1E-19 2.1E-23 104.7 11.3 75 7-82 20-94 (114)
66 1x4b_A Heterogeneous nuclear r 99.8 1.3E-19 4.5E-24 108.0 8.3 84 11-95 26-109 (116)
67 2cqp_A RNA-binding protein 12; 99.8 1E-19 3.5E-24 105.4 7.3 83 9-91 12-94 (98)
68 2nlw_A Eukaryotic translation 99.8 1.5E-19 5.1E-24 106.2 8.0 85 7-93 10-101 (105)
69 2mss_A Protein (musashi1); RNA 99.8 1.7E-19 5.7E-24 99.7 7.6 74 14-88 1-74 (75)
70 1x4e_A RNA binding motif, sing 99.8 4.9E-20 1.7E-24 104.2 5.5 76 10-85 3-78 (85)
71 1wg5_A Heterogeneous nuclear r 99.8 1E-18 3.5E-23 102.4 11.3 82 9-92 12-94 (104)
72 2ek1_A RNA-binding protein 12; 99.8 1.1E-19 3.6E-24 104.7 6.9 81 10-90 13-93 (95)
73 2cpi_A CCR4-NOT transcription 99.8 1.6E-19 5.4E-24 107.0 7.7 85 9-93 12-102 (111)
74 2ki2_A SS-DNA binding protein 99.8 7.4E-20 2.5E-24 104.5 6.0 80 13-93 2-81 (90)
75 1rk8_A CG8781-PA, CG8781-PA pr 99.8 6.6E-19 2.3E-23 110.9 10.9 85 10-94 70-154 (165)
76 2dgw_A Probable RNA-binding pr 99.8 6.5E-19 2.2E-23 100.7 9.8 82 9-93 7-88 (91)
77 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.2E-19 7.4E-24 104.6 7.8 83 8-92 15-98 (100)
78 2krb_A Eukaryotic translation 99.8 3.1E-19 1E-23 100.2 7.9 72 13-86 2-80 (81)
79 2rs2_A Musashi-1, RNA-binding 99.8 3.3E-19 1.1E-23 105.4 8.4 85 8-93 21-105 (109)
80 1wez_A HnRNP H', FTP-3, hetero 99.8 1.1E-18 3.8E-23 102.1 10.5 81 9-92 12-92 (102)
81 2lea_A Serine/arginine-rich sp 99.8 2.5E-19 8.6E-24 109.6 8.0 84 9-92 44-127 (135)
82 2kt5_A RNA and export factor-b 99.8 1.2E-18 4.2E-23 104.9 10.9 83 10-93 33-115 (124)
83 1x4a_A Splicing factor, argini 99.8 1.2E-18 4.2E-23 102.7 10.7 83 8-93 18-100 (109)
84 2jwn_A Embryonic polyadenylate 99.8 8.2E-19 2.8E-23 105.6 10.0 80 11-91 35-114 (124)
85 2dgx_A KIAA0430 protein; RRM d 99.8 4.7E-19 1.6E-23 102.4 8.5 82 9-93 6-91 (96)
86 2cq4_A RNA binding motif prote 99.8 1.4E-19 4.9E-24 107.5 6.3 82 11-93 24-105 (114)
87 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.5E-19 8.7E-24 99.4 6.7 76 13-89 1-76 (77)
88 2cpy_A RNA-binding protein 12; 99.8 2.7E-19 9.3E-24 106.5 7.3 82 9-92 12-94 (114)
89 2fc8_A NCL protein; structure 99.8 1.5E-18 5E-23 101.2 10.2 84 8-94 11-94 (102)
90 1x4g_A Nucleolysin TIAR; struc 99.8 1.1E-18 3.7E-23 103.0 9.7 84 6-95 19-102 (109)
91 2dis_A Unnamed protein product 99.8 1.8E-18 6.1E-23 101.9 10.6 85 10-94 6-94 (109)
92 2fc9_A NCL protein; structure 99.8 1E-18 3.4E-23 101.7 9.2 82 8-93 11-92 (101)
93 2dnq_A RNA-binding protein 4B; 99.8 2.7E-18 9.3E-23 98.0 10.7 78 9-94 5-82 (90)
94 2cpx_A Hypothetical protein FL 99.8 3.2E-19 1.1E-23 106.0 7.0 86 10-95 23-108 (115)
95 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 8.2E-19 2.8E-23 107.4 9.0 80 9-88 60-139 (140)
96 2err_A Ataxin-2-binding protei 99.8 6.5E-19 2.2E-23 104.1 7.9 83 8-92 25-107 (109)
97 1x4d_A Matrin 3; structural ge 99.8 8.6E-19 2.9E-23 102.5 8.2 81 9-95 12-95 (102)
98 3q2s_C Cleavage and polyadenyl 99.8 9.2E-19 3.2E-23 115.6 9.3 81 11-91 67-149 (229)
99 1x4c_A Splicing factor, argini 99.8 2.4E-18 8.1E-23 101.4 9.9 78 9-93 12-94 (108)
100 2hgl_A HNRPF protein, heteroge 99.8 6.6E-19 2.2E-23 107.9 7.4 82 9-92 41-125 (136)
101 3pgw_S U1-70K; protein-RNA com 99.8 2.4E-18 8.3E-23 122.7 11.3 85 11-95 101-185 (437)
102 1sjq_A Polypyrimidine tract-bi 99.8 1.2E-18 4E-23 102.3 7.9 79 9-93 13-93 (105)
103 2cq1_A PTB-like protein L; RRM 99.8 4E-18 1.4E-22 99.5 9.9 82 8-95 11-94 (101)
104 2db1_A Heterogeneous nuclear r 99.8 1E-18 3.5E-23 104.6 7.4 81 9-91 14-97 (118)
105 1wel_A RNA-binding protein 12; 99.8 6.8E-19 2.3E-23 106.1 6.5 83 9-92 22-104 (124)
106 1iqt_A AUF1, heterogeneous nuc 99.8 7.3E-19 2.5E-23 97.1 6.1 74 14-88 1-74 (75)
107 2hgn_A Heterogeneous nuclear r 99.8 4.3E-19 1.5E-23 109.1 5.6 82 9-93 43-124 (139)
108 2lmi_A GRSF-1, G-rich sequence 99.8 9E-19 3.1E-23 103.1 6.6 83 8-92 7-92 (107)
109 2kvi_A Nuclear polyadenylated 99.8 5.1E-18 1.7E-22 98.0 9.4 78 9-94 7-85 (96)
110 2ad9_A Polypyrimidine tract-bi 99.8 6.8E-18 2.3E-22 101.1 10.1 80 9-94 28-109 (119)
111 1why_A Hypothetical protein ri 99.8 8.3E-18 2.8E-22 97.2 10.2 79 9-93 14-94 (97)
112 1wex_A Hypothetical protein (r 99.8 7.2E-18 2.5E-22 98.9 10.0 80 8-93 11-92 (104)
113 2cpj_A Non-POU domain-containi 99.8 6.5E-18 2.2E-22 98.0 9.3 80 8-93 11-90 (99)
114 2a3j_A U1 small nuclear ribonu 99.8 9.7E-18 3.3E-22 101.6 10.4 82 9-93 26-111 (127)
115 2qfj_A FBP-interacting repress 99.8 2E-17 7E-22 107.2 12.5 85 10-94 123-207 (216)
116 3r27_A HnRNP L, heterogeneous 99.8 5.6E-18 1.9E-22 98.5 8.7 78 9-92 18-97 (100)
117 2hvz_A Splicing factor, argini 99.8 5.1E-18 1.8E-22 98.7 8.5 76 13-93 1-76 (101)
118 4f02_A Polyadenylate-binding p 99.8 9.8E-18 3.3E-22 109.3 10.8 82 10-91 13-94 (213)
119 2wbr_A GW182, gawky, LD47780P; 99.8 2E-18 7E-23 97.7 6.4 73 12-90 7-79 (89)
120 2cpd_A Apobec-1 stimulating pr 99.8 1.1E-17 3.8E-22 97.0 9.7 80 7-94 10-91 (99)
121 1fj7_A Nucleolin RBD1, protein 99.8 3.6E-19 1.2E-23 103.6 3.1 81 10-92 15-95 (101)
122 1fxl_A Paraneoplastic encephal 99.8 1.8E-17 6.2E-22 103.3 11.0 80 12-91 2-81 (167)
123 2xs2_A Deleted in azoospermia- 99.7 2.1E-18 7.1E-23 100.6 6.2 83 9-94 6-88 (102)
124 3beg_B Splicing factor, argini 99.7 4.7E-18 1.6E-22 101.3 7.7 69 10-85 14-82 (115)
125 2dnp_A RNA-binding protein 14; 99.7 1.6E-17 5.3E-22 94.8 9.6 78 8-93 5-82 (90)
126 3lqv_A PRE-mRNA branch site pr 99.7 1.6E-17 5.6E-22 98.6 10.0 82 10-94 6-87 (115)
127 2f3j_A RNA and export factor b 99.7 1.4E-17 5E-22 106.0 10.2 82 11-93 87-168 (177)
128 1whx_A Hypothetical protein ri 99.7 1.5E-17 5.3E-22 98.5 9.6 78 10-93 8-85 (111)
129 2la4_A Nuclear and cytoplasmic 99.7 4.6E-18 1.6E-22 98.9 7.2 78 8-91 23-100 (101)
130 2dgt_A RNA-binding protein 30; 99.7 1.8E-17 6.1E-22 94.9 9.6 79 8-94 6-84 (92)
131 2jvr_A Nucleolar protein 3; RN 99.7 5.2E-18 1.8E-22 100.6 7.3 78 10-91 26-104 (111)
132 1b7f_A Protein (SXL-lethal pro 99.7 1.8E-17 6E-22 103.7 10.1 81 11-91 2-82 (168)
133 2dgu_A Heterogeneous nuclear r 99.7 2.2E-17 7.4E-22 96.4 9.7 78 9-94 8-85 (103)
134 2e5j_A Methenyltetrahydrofolat 99.7 1.5E-17 5.2E-22 96.1 8.9 79 10-93 17-95 (97)
135 1fjc_A Nucleolin RBD2, protein 99.7 3E-18 1E-22 98.8 5.9 80 8-92 12-91 (96)
136 2dha_A FLJ20171 protein; RRM d 99.7 5.1E-18 1.8E-22 102.3 7.1 81 9-91 20-104 (123)
137 1wf1_A RNA-binding protein RAL 99.7 1.7E-17 5.7E-22 98.0 9.1 74 11-92 26-100 (110)
138 2dnn_A RNA-binding protein 12; 99.7 8.3E-18 2.8E-22 99.4 7.7 78 12-92 16-93 (109)
139 2i2y_A Fusion protein consists 99.7 2E-17 6.8E-22 102.6 9.6 79 9-92 70-148 (150)
140 2dnl_A Cytoplasmic polyadenyla 99.7 2.1E-17 7.2E-22 98.2 9.3 66 9-75 5-73 (114)
141 1nu4_A U1A RNA binding domain; 99.7 6.3E-18 2.2E-22 97.5 6.6 81 9-92 5-89 (97)
142 2hgm_A HNRPF protein, heteroge 99.7 1.3E-17 4.4E-22 100.9 8.2 79 10-91 40-120 (126)
143 2e5g_A U6 snRNA-specific termi 99.7 3.2E-17 1.1E-21 94.3 9.5 79 10-94 6-84 (94)
144 3md3_A Nuclear and cytoplasmic 99.7 4.4E-17 1.5E-21 101.5 10.7 82 9-90 84-165 (166)
145 2ytc_A PRE-mRNA-splicing facto 99.7 2.4E-17 8.3E-22 92.9 8.6 76 8-89 8-84 (85)
146 2cqh_A IGF-II mRNA-binding pro 99.7 1.2E-17 4.2E-22 95.7 7.3 79 9-94 5-85 (93)
147 2jvo_A Nucleolar protein 3; nu 99.7 1.7E-17 5.9E-22 97.9 8.0 77 8-92 27-103 (108)
148 2j8a_A Histone-lysine N-methyl 99.7 9.8E-18 3.4E-22 101.0 6.9 77 13-89 3-93 (136)
149 2xnq_A Nuclear polyadenylated 99.7 5.3E-17 1.8E-21 94.0 9.6 76 8-91 18-94 (97)
150 2yh0_A Splicing factor U2AF 65 99.7 4.8E-17 1.7E-21 104.2 10.0 84 10-93 112-195 (198)
151 1l3k_A Heterogeneous nuclear r 99.7 5.4E-17 1.8E-21 103.8 10.0 84 8-92 9-92 (196)
152 1x4f_A Matrin 3; structural ge 99.7 3.2E-17 1.1E-21 97.2 8.2 79 9-93 22-103 (112)
153 2e44_A Insulin-like growth fac 99.7 4E-17 1.4E-21 94.0 8.4 79 10-92 13-92 (96)
154 3md3_A Nuclear and cytoplasmic 99.7 5E-17 1.7E-21 101.2 9.5 79 13-92 1-79 (166)
155 3nmr_A Cugbp ELAV-like family 99.7 1.3E-16 4.4E-21 100.2 11.3 72 11-82 2-75 (175)
156 1l3k_A Heterogeneous nuclear r 99.7 8.7E-17 3E-21 102.8 10.4 84 11-95 103-186 (196)
157 2g4b_A Splicing factor U2AF 65 99.7 7.3E-17 2.5E-21 101.3 9.2 79 11-89 93-171 (172)
158 1b7f_A Protein (SXL-lethal pro 99.7 3.8E-16 1.3E-20 97.5 12.0 79 10-88 87-167 (168)
159 2qfj_A FBP-interacting repress 99.7 1.4E-16 4.7E-21 103.3 10.3 80 11-90 27-106 (216)
160 2cjk_A Nuclear polyadenylated 99.7 5E-17 1.7E-21 101.6 7.6 81 11-92 86-166 (167)
161 1wg1_A KIAA1579 protein, homol 99.7 6.4E-17 2.2E-21 91.9 7.3 75 11-92 4-78 (88)
162 4f02_A Polyadenylate-binding p 99.7 1.6E-16 5.4E-21 103.5 10.1 80 11-92 102-181 (213)
163 3egn_A RNA-binding protein 40; 99.7 1.1E-17 3.7E-22 103.0 4.2 84 10-93 43-131 (143)
164 1x5p_A Negative elongation fac 99.7 1.8E-16 6.1E-21 91.6 9.0 78 9-94 12-89 (97)
165 2cq2_A Hypothetical protein LO 99.7 1.2E-16 4.3E-21 94.9 8.3 77 9-91 22-105 (114)
166 1fxl_A Paraneoplastic encephal 99.7 6.9E-16 2.3E-20 96.1 11.8 74 10-83 86-159 (167)
167 3nmr_A Cugbp ELAV-like family 99.7 6.8E-16 2.3E-20 96.9 11.5 78 11-89 94-174 (175)
168 1sjr_A Polypyrimidine tract-bi 99.7 4.6E-16 1.6E-20 97.6 9.9 77 12-92 46-124 (164)
169 2hzc_A Splicing factor U2AF 65 99.7 2.4E-16 8.2E-21 89.1 7.2 71 10-87 4-85 (87)
170 2cjk_A Nuclear polyadenylated 99.7 1.9E-16 6.6E-21 98.9 7.4 78 11-90 2-79 (167)
171 3d2w_A TAR DNA-binding protein 99.7 4.6E-16 1.6E-20 88.7 8.0 76 8-92 7-84 (89)
172 3zzy_A Polypyrimidine tract-bi 99.7 7.3E-16 2.5E-20 93.5 9.1 76 12-92 28-106 (130)
173 1wf0_A TDP-43, TAR DNA-binding 99.7 1.1E-16 3.9E-21 90.8 5.2 75 10-93 3-79 (88)
174 3tyt_A Heterogeneous nuclear r 99.7 5.3E-16 1.8E-20 100.8 8.8 76 11-91 3-79 (205)
175 2voo_A Lupus LA protein; RNA-b 99.7 9.2E-16 3.2E-20 98.9 9.6 76 12-89 109-184 (193)
176 2e5i_A Heterogeneous nuclear r 99.7 1.7E-15 5.8E-20 91.3 9.9 73 14-92 27-102 (124)
177 2diu_A KIAA0430 protein; struc 99.6 2.8E-15 9.6E-20 85.7 10.0 74 12-95 8-87 (96)
178 3pgw_A U1-A; protein-RNA compl 99.6 3.2E-15 1.1E-19 100.7 10.7 82 8-92 5-90 (282)
179 3smz_A Protein raver-1, ribonu 99.6 6.5E-15 2.2E-19 99.2 11.9 83 10-92 93-175 (284)
180 1fje_B Nucleolin RBD12, protei 99.6 1.2E-15 4.2E-20 96.0 7.2 77 11-92 98-174 (175)
181 2bz2_A Negative elongation fac 99.6 3.2E-15 1.1E-19 89.7 8.5 76 10-93 37-112 (121)
182 2adc_A Polypyrimidine tract-bi 99.6 4.5E-15 1.5E-19 97.6 9.8 79 8-91 30-109 (229)
183 2ghp_A U4/U6 snRNA-associated 99.6 2E-15 6.9E-20 102.1 8.3 82 10-92 208-291 (292)
184 3smz_A Protein raver-1, ribonu 99.6 5.2E-15 1.8E-19 99.7 9.9 82 10-92 182-264 (284)
185 2pe8_A Splicing factor 45; RRM 99.6 1E-14 3.5E-19 85.5 9.9 84 9-92 5-94 (105)
186 1qm9_A Polypyrimidine tract-bi 99.6 5.1E-15 1.7E-19 95.0 7.8 76 11-91 2-78 (198)
187 3u1l_A PRE-mRNA-splicing facto 99.6 1E-14 3.5E-19 96.6 8.6 79 9-93 131-230 (240)
188 3pgw_A U1-A; protein-RNA compl 99.6 2.6E-14 8.8E-19 96.2 10.0 77 9-90 204-281 (282)
189 3sde_A Paraspeckle component 1 99.6 3.5E-14 1.2E-18 95.0 10.2 80 11-91 95-178 (261)
190 1qm9_A Polypyrimidine tract-bi 99.5 3.7E-14 1.3E-18 90.9 9.4 77 11-92 119-197 (198)
191 3tyt_A Heterogeneous nuclear r 99.5 1.2E-14 4E-19 94.5 6.8 71 11-83 122-194 (205)
192 2ghp_A U4/U6 snRNA-associated 99.5 2.6E-14 9E-19 96.6 8.5 83 10-93 115-198 (292)
193 1fje_B Nucleolin RBD12, protei 99.5 1.1E-15 3.8E-20 96.2 1.6 82 8-91 9-90 (175)
194 2dit_A HIV TAT specific factor 99.5 7.1E-14 2.4E-18 82.7 9.2 82 10-95 13-105 (112)
195 2adc_A Polypyrimidine tract-bi 99.5 6.3E-14 2.1E-18 92.1 9.8 77 11-92 150-228 (229)
196 3sde_A Paraspeckle component 1 99.5 5.7E-14 2E-18 93.9 7.8 76 10-91 20-95 (261)
197 1jmt_A Splicing factor U2AF 35 99.5 1.3E-14 4.4E-19 85.0 3.9 71 17-88 20-102 (104)
198 2g4b_A Splicing factor U2AF 65 99.5 8.5E-14 2.9E-18 87.2 6.5 73 11-90 3-86 (172)
199 3v4m_A Splicing factor U2AF 65 99.5 3.3E-13 1.1E-17 79.1 8.1 82 11-92 4-97 (105)
200 2yh0_A Splicing factor U2AF 65 99.4 1.3E-13 4.6E-18 88.0 6.2 74 11-91 3-87 (198)
201 3ue2_A Poly(U)-binding-splicin 99.4 9E-13 3.1E-17 78.7 9.1 81 11-91 19-108 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.4E-12 1.2E-16 74.1 10.9 75 12-93 10-91 (100)
203 3tht_A Alkylated DNA repair pr 99.4 8.6E-13 3E-17 91.5 8.0 67 8-80 14-82 (345)
204 1owx_A Lupus LA protein, SS-B, 99.2 1.1E-10 3.9E-15 69.7 9.0 74 9-88 15-92 (121)
205 3s6e_A RNA-binding protein 39; 99.2 4.8E-11 1.6E-15 70.8 5.5 76 12-91 7-92 (114)
206 2dnr_A Synaptojanin-1; RRM dom 99.0 1.1E-09 3.7E-14 62.0 6.6 73 10-91 5-85 (91)
207 3dxb_A Thioredoxin N-terminall 99.0 5.4E-09 1.9E-13 68.1 9.0 67 25-91 142-212 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.9 4E-09 1.4E-13 60.0 5.0 77 5-90 8-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.6 2.2E-07 7.5E-12 54.1 6.9 76 9-90 18-98 (117)
210 1whv_A Poly(A)-specific ribonu 97.9 6E-05 2E-09 43.0 6.3 55 12-75 16-70 (100)
211 3ctr_A Poly(A)-specific ribonu 97.7 7.2E-05 2.5E-09 42.7 4.9 54 13-75 7-60 (101)
212 1uw4_A UPF3X; nonsense mediate 97.7 0.00039 1.3E-08 39.2 7.6 72 13-84 2-75 (91)
213 2dhx_A Poly (ADP-ribose) polym 97.4 0.0036 1.2E-07 36.0 9.6 71 10-89 6-81 (104)
214 1wey_A Calcipressin 1; structu 97.4 0.00027 9.3E-09 40.7 4.9 75 11-91 4-83 (104)
215 1wwh_A Nucleoporin 35, nucleop 97.2 0.0017 5.8E-08 38.3 6.7 67 7-81 19-85 (119)
216 2l08_A Regulator of nonsense t 97.0 0.0013 4.3E-08 37.5 4.2 73 12-84 9-83 (97)
217 3pq1_A Poly(A) RNA polymerase; 96.9 0.0006 2.1E-08 49.1 3.1 56 12-73 53-108 (464)
218 2kn4_A Immunoglobulin G-bindin 96.4 0.0036 1.2E-07 38.1 3.8 33 42-76 3-35 (158)
219 3p3d_A Nucleoporin 53; structu 94.9 0.05 1.7E-06 32.6 4.5 74 13-88 8-95 (132)
220 3d45_A Poly(A)-specific ribonu 94.1 0.29 9.8E-06 35.7 7.8 57 12-77 440-496 (507)
221 2i2y_A Fusion protein consists 94.1 0.015 5.1E-07 35.1 1.0 41 50-91 9-50 (150)
222 2g0c_A ATP-dependent RNA helic 38.7 41 0.0014 17.2 6.8 58 23-89 12-74 (76)
223 3ghg_C Fibrinogen gamma chain; 33.2 10 0.00035 26.9 0.3 11 104-114 331-341 (411)
224 3ghg_B Fibrinogen beta chain; 30.5 12 0.00041 27.0 0.2 11 104-114 399-409 (461)
225 1fzc_B Fibrin; blood coagulati 28.6 13 0.00046 25.5 0.2 12 103-114 265-276 (328)
226 1lwu_C Fibrinogen gamma chain; 28.4 13 0.00044 25.5 0.1 11 104-114 251-261 (323)
227 1fzc_C Fibrin; blood coagulati 28.3 14 0.00047 25.4 0.2 11 104-114 244-254 (319)
228 1m1j_B Fibrinogen beta chain; 28.0 13 0.00045 26.9 0.1 11 104-114 403-413 (464)
229 2wnp_F Ficolin-1; glycoprotein 27.6 14 0.00047 23.9 0.1 11 104-114 166-176 (217)
230 1fzd_A Fibrinogen-420; blood c 27.1 14 0.00048 23.5 0.1 11 104-114 139-149 (201)
231 1m1j_C Fibrinogen gamma chain; 26.9 14 0.00049 26.2 0.1 11 104-114 331-341 (409)
232 1lwu_B Fibrinogen beta chain; 26.8 14 0.00049 25.3 0.1 12 103-114 262-273 (323)
233 3h7h_B Transcription elongatio 26.7 43 0.0015 18.9 2.1 26 52-77 49-74 (106)
234 2d39_A Ficolin-1; innate immun 26.5 15 0.00051 24.1 0.2 11 104-114 163-173 (237)
235 2j5z_A Ficolin-3; hydroxylatio 26.5 14 0.00047 24.0 0.0 11 104-114 172-182 (221)
236 1z3u_A Angiopoietin-2, ANG-2; 25.8 15 0.00053 23.7 0.1 11 104-114 163-173 (217)
237 1jc9_A Techylectin-5A; fibrino 25.1 16 0.00055 24.4 0.1 11 104-114 211-221 (269)
238 3lpe_A Putative transcription 23.4 72 0.0025 17.2 2.6 24 53-76 49-72 (92)
239 2fib_A Fibrinogen; fibrinogen, 23.3 18 0.00063 24.1 0.1 11 104-114 189-199 (269)
240 4e8u_A Putative uncharacterize 22.8 1.4E+02 0.0049 18.4 8.1 58 12-72 12-81 (172)
241 3fut_A Dimethyladenosine trans 22.6 96 0.0033 20.4 3.5 29 13-42 111-139 (271)
242 2jr3_A Pelovaterin; beta-defen 22.0 42 0.0014 15.0 1.2 10 98-107 4-13 (42)
243 3pc6_A DNA repair protein XRCC 21.5 1.1E+02 0.0036 17.1 3.1 29 11-39 9-37 (104)
244 2cu1_A Mitogen-activated prote 21.1 1.2E+02 0.0042 17.0 6.6 65 19-92 23-88 (103)
245 2q2k_A Hypothetical protein; p 20.9 21 0.0007 17.8 -0.0 21 16-36 42-62 (70)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=118.42 Aligned_cols=83 Identities=22% Similarity=0.284 Sum_probs=77.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
..++++|||+|||.++++++|+++|++||.|..+++++++.+|.++|||||+|.+.++|++|++.||+..+.|+.++|..
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999887
Q ss_pred eee
Q psy3928 89 TTS 91 (115)
Q Consensus 89 ~~~ 91 (115)
++|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 764
No 2
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=6.1e-21 Score=109.97 Aligned_cols=86 Identities=26% Similarity=0.287 Sum_probs=79.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||..+++++|+++|.+||.+..+.+..++.++.++|||||+|.+.++|++|+..||+..+.|+.++|..+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999888
Q ss_pred eecccc
Q psy3928 90 TSRLSF 95 (115)
Q Consensus 90 ~~~~~~ 95 (115)
+++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 775544
No 3
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=7.6e-21 Score=111.30 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=82.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhh-cCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCC-CCCceeeE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSK-YGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPC-PTDYQSSI 86 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~-~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~-~~~~~~~v 86 (115)
....++|||+|||.++++++|+++|.. ||.|..+.++.++ ++.++|||||+|.+.++|++|++.|++.. +.|+.+.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 455689999999999999999999999 9999999999998 99999999999999999999999999999 99999998
Q ss_pred EEeeeccccCCCCCCCC
Q psy3928 87 LTTTSRLSFGITPLGFE 103 (115)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ 103 (115)
..+.++.....+...++
T Consensus 85 ~~a~~~~~~~~~~~~~p 101 (104)
T 2dhg_A 85 SVAIPKASRVKPVESGP 101 (104)
T ss_dssp CBCCCCCSCCCCCCCCC
T ss_pred EEccCCCcCCCCCCCCC
Confidence 88876555443333333
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=5.2e-21 Score=113.46 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||..+++++|+++|++||.|..+.|+.++.+++++|||||+|.+.++|++|++.||+..+.|+.+.|..+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999877
Q ss_pred ee
Q psy3928 90 TS 91 (115)
Q Consensus 90 ~~ 91 (115)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 5
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1e-20 Score=110.39 Aligned_cols=86 Identities=22% Similarity=0.291 Sum_probs=80.0
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|++.||+..+.++.+.|..
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999888899999999999999999999999999999999999998
Q ss_pred eeeccc
Q psy3928 89 TTSRLS 94 (115)
Q Consensus 89 ~~~~~~ 94 (115)
++++..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 886544
No 6
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=109.27 Aligned_cols=87 Identities=16% Similarity=0.212 Sum_probs=79.6
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+. +++..+.|+.+.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999 99999999999998
Q ss_pred Eeeecccc
Q psy3928 88 TTTSRLSF 95 (115)
Q Consensus 88 ~~~~~~~~ 95 (115)
.+.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 88765443
No 7
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-20 Score=109.66 Aligned_cols=86 Identities=26% Similarity=0.273 Sum_probs=79.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.+.|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999999988899999999999999999999999999999999999988
Q ss_pred eeeccc
Q psy3928 89 TTSRLS 94 (115)
Q Consensus 89 ~~~~~~ 94 (115)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 877544
No 8
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5.8e-21 Score=111.68 Aligned_cols=87 Identities=22% Similarity=0.247 Sum_probs=80.3
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|..||.|..+.+..++.++.++|||||+|.+.++|++|+..||+..+.|+.+.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999999999998
Q ss_pred Eeeeccc
Q psy3928 88 TTTSRLS 94 (115)
Q Consensus 88 ~~~~~~~ 94 (115)
.+++...
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 8876443
No 9
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.85 E-value=1.3e-20 Score=110.65 Aligned_cols=88 Identities=18% Similarity=0.261 Sum_probs=79.9
Q ss_pred cccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCC---CCce
Q psy3928 7 NNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP---TDYQ 83 (115)
Q Consensus 7 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~---~~~~ 83 (115)
......++|||+|||..+++++|+++|.+||.|..+.++.++.++.++|||||+|.+.++|++|++.|++..+ .++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456678999999999999999999999999999999999988899999999999999999999999999987 8888
Q ss_pred eeEEEeeeccc
Q psy3928 84 SSILTTTSRLS 94 (115)
Q Consensus 84 ~~v~~~~~~~~ 94 (115)
+.|..+.++..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 88888776443
No 10
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=9.8e-21 Score=112.76 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=80.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|++.||+..+.++.++|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred Eeeeccc
Q psy3928 88 TTTSRLS 94 (115)
Q Consensus 88 ~~~~~~~ 94 (115)
.++++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 8876544
No 11
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-20 Score=115.04 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=79.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.++|..
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44568999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred eeeccc
Q psy3928 89 TTSRLS 94 (115)
Q Consensus 89 ~~~~~~ 94 (115)
++++..
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 876544
No 12
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.85 E-value=1.7e-21 Score=111.51 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=71.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcC--CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYG--KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g--~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
.+|||+|||.++++++|+++|.+|| .+..+.++.++.+|+++|||||+|.+.++|++|++.||+..+.|+.+.|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998899999999999999999999999999999999999988777
Q ss_pred eccc
Q psy3928 91 SRLS 94 (115)
Q Consensus 91 ~~~~ 94 (115)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6433
No 13
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=106.66 Aligned_cols=83 Identities=25% Similarity=0.280 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||.++++++|+++|++||.+..+.+..++.++.++|||||+|.+.++|++|++.|++..+.|+.+.|..+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999998887
Q ss_pred eec
Q psy3928 90 TSR 92 (115)
Q Consensus 90 ~~~ 92 (115)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 14
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.6e-20 Score=109.45 Aligned_cols=88 Identities=28% Similarity=0.424 Sum_probs=80.6
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEecee-CCCCCeeeEEEEEecCHHHHHHHHHhh-CCCCCCCceee
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKF-KSTGKLKGFAFVEFSTKEEATKALELG-LNPCPTDYQSS 85 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~-~~~~~~~g~~fv~f~~~~~a~~al~~l-~~~~~~~~~~~ 85 (115)
.....++|||+|||..+++++|+++|..||.|..+.++.+ +.++.++|||||+|.+.++|++|+..| |+..+.|+.+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 4556789999999999999999999999999999999988 678999999999999999999999999 99999999999
Q ss_pred EEEeeecccc
Q psy3928 86 ILTTTSRLSF 95 (115)
Q Consensus 86 v~~~~~~~~~ 95 (115)
|..++++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9988875443
No 15
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.1e-20 Score=109.54 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=80.0
Q ss_pred cccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 7 NNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 7 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
......++|||+|||..+++++|+++|.+||.|..+.+..++.++.++|||||+|.+.++|++|+..|++..+.|+.+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999998
Q ss_pred EEeeecc
Q psy3928 87 LTTTSRL 93 (115)
Q Consensus 87 ~~~~~~~ 93 (115)
..++++.
T Consensus 90 ~~a~~~~ 96 (105)
T 1x5u_A 90 NKASAHN 96 (105)
T ss_dssp EETTTTS
T ss_pred EECCCCC
Confidence 8877543
No 16
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-20 Score=110.15 Aligned_cols=87 Identities=20% Similarity=0.306 Sum_probs=80.3
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45567899999999999999999999999999999999998899999999999999999999999999999999999988
Q ss_pred Eeeeccc
Q psy3928 88 TTTSRLS 94 (115)
Q Consensus 88 ~~~~~~~ 94 (115)
.++++..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 8776543
No 17
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.9e-20 Score=110.65 Aligned_cols=88 Identities=24% Similarity=0.320 Sum_probs=80.5
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhC------CCCCCC
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGL------NPCPTD 81 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~------~~~~~~ 81 (115)
.....++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..++ +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999998889999999999999999999999999 999999
Q ss_pred ceeeEEEeeecccc
Q psy3928 82 YQSSILTTTSRLSF 95 (115)
Q Consensus 82 ~~~~v~~~~~~~~~ 95 (115)
+.+.|..+.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99998888775444
No 18
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.85 E-value=2.2e-20 Score=110.36 Aligned_cols=85 Identities=24% Similarity=0.270 Sum_probs=79.2
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|++||.+..+.++.++.++.++|||||+|.+.++|++|++.+++..+.|+.++|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35567899999999999999999999999999999999998899999999999999999999999999999999999988
Q ss_pred Eeeec
Q psy3928 88 TTTSR 92 (115)
Q Consensus 88 ~~~~~ 92 (115)
.++++
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 77654
No 19
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-20 Score=108.94 Aligned_cols=86 Identities=21% Similarity=0.224 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCC---CCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKS---TGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~---~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
.+.++|||+|||.++++++|+++|..||.|..+.+..++. ++.++|||||+|.+.++|++|+..|++..+.|+.+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999998875 5589999999999999999999999999999999988
Q ss_pred EEeeecccc
Q psy3928 87 LTTTSRLSF 95 (115)
Q Consensus 87 ~~~~~~~~~ 95 (115)
..++++...
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 887765443
No 20
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=2.7e-20 Score=104.69 Aligned_cols=80 Identities=14% Similarity=0.174 Sum_probs=75.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeeec
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTSR 92 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~~ 92 (115)
.+|||+|||.++++++|+++|.+||.+..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.+++..++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999998877754
No 21
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=110.64 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=78.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||.++++++|+++|+.||.|..+.+..++ ++.++|||||+|.+.++|++|++.|++..+.|..+.|..
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3556899999999999999999999999999999999988 899999999999999999999999999999999999998
Q ss_pred eeeccc
Q psy3928 89 TTSRLS 94 (115)
Q Consensus 89 ~~~~~~ 94 (115)
++++..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 876543
No 22
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.84 E-value=4.8e-21 Score=111.71 Aligned_cols=85 Identities=25% Similarity=0.261 Sum_probs=78.8
Q ss_pred CCCCEEEEcCCCC------CCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCC-c
Q psy3928 10 KYGRVVLKEKLPP------EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTD-Y 82 (115)
Q Consensus 10 ~~~~~l~V~~l~~------~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~-~ 82 (115)
...++|||+|||. .+++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.||+..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3457999999999 99999999999999999999999999889999999999999999999999999999999 9
Q ss_pred eeeEEEeeeccc
Q psy3928 83 QSSILTTTSRLS 94 (115)
Q Consensus 83 ~~~v~~~~~~~~ 94 (115)
.+.|..+.++..
T Consensus 84 ~l~V~~a~~~~~ 95 (100)
T 3ns6_A 84 RLFLYTMKDVER 95 (100)
T ss_dssp BCEEEESHHHHH
T ss_pred EEEEEECchhhh
Confidence 999988876543
No 23
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=5.5e-20 Score=107.47 Aligned_cols=85 Identities=22% Similarity=0.252 Sum_probs=78.2
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|..||.|..+.+..+ ++.+++||||+|.+.++|++|+..||+..+.++.+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 4456789999999999999999999999999999999887 88999999999999999999999999999999999999
Q ss_pred Eeeeccc
Q psy3928 88 TTTSRLS 94 (115)
Q Consensus 88 ~~~~~~~ 94 (115)
.++++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 8876544
No 24
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=3.9e-20 Score=108.15 Aligned_cols=85 Identities=22% Similarity=0.265 Sum_probs=78.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|..|| |..+.++.++.++.++|||||+|.+.++|++|+ .|++..+.|+.+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 445678999999999999999999999996 999999999888999999999999999999999 899999999999998
Q ss_pred Eeeeccc
Q psy3928 88 TTTSRLS 94 (115)
Q Consensus 88 ~~~~~~~ 94 (115)
.+.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 8876544
No 25
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=6.4e-20 Score=109.16 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=79.8
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|++.|++..+.|+.+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Eeeecc
Q psy3928 88 TTTSRL 93 (115)
Q Consensus 88 ~~~~~~ 93 (115)
.++++.
T Consensus 91 ~a~~~~ 96 (115)
T 2dgo_A 91 WATRKP 96 (115)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 887643
No 26
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=2.7e-20 Score=105.14 Aligned_cols=81 Identities=25% Similarity=0.331 Sum_probs=75.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||.++++++|+++|.+||.+..+.++.++.++.++|||||+|.+.++|++|++.||+..+.|+.+++..
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999999988999999999999999999999999999999999888776
Q ss_pred e
Q psy3928 89 T 89 (115)
Q Consensus 89 ~ 89 (115)
+
T Consensus 84 a 84 (85)
T 3mdf_A 84 A 84 (85)
T ss_dssp C
T ss_pred c
Confidence 4
No 27
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=111.53 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=81.1
Q ss_pred hcccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeE--------EEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCC
Q psy3928 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVT--------YVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNP 77 (115)
Q Consensus 6 ~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~--------~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~ 77 (115)
+......++|||+|||..+++++|+++|..||.+. .+.+..++.++.++|||||+|.+.++|++|+..||+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34556778999999999999999999999999998 6999998889999999999999999999999999999
Q ss_pred CCCCceeeEEEeeecccc
Q psy3928 78 CPTDYQSSILTTTSRLSF 95 (115)
Q Consensus 78 ~~~~~~~~v~~~~~~~~~ 95 (115)
.+.|+.+.|..++++...
T Consensus 89 ~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp EETTEECEEECSSCCCCS
T ss_pred ccCCCEEEEEECCCCCCC
Confidence 999999998887765443
No 28
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=107.69 Aligned_cols=85 Identities=19% Similarity=0.225 Sum_probs=78.5
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|..||.+..+.+..++ ++.++|||||+|.+.++|++|+..|++..+.|+.+.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999988 89999999999999999999999999999999999988
Q ss_pred Eeeecc
Q psy3928 88 TTTSRL 93 (115)
Q Consensus 88 ~~~~~~ 93 (115)
.++++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 877644
No 29
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.6e-20 Score=107.91 Aligned_cols=83 Identities=27% Similarity=0.311 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||..+++++|+++|..||.|..+.+..++.++.++|||||+|.+.++|++|+..|++..+.|+.+.|..+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 44578999999999999999999999999999999999888999999999999999999999999999999999999887
Q ss_pred eec
Q psy3928 90 TSR 92 (115)
Q Consensus 90 ~~~ 92 (115)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 764
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-21 Score=111.51 Aligned_cols=80 Identities=30% Similarity=0.408 Sum_probs=72.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcC-CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhC-CCCCCCceeeEEEee
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGL-NPCPTDYQSSILTTT 90 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~-~~~~~~~~~~v~~~~ 90 (115)
++|||+|||.++++++|+++|++|| .+..+++++++.++.++|||||+|.+.++|++|++.++ +..+.|+.++|..+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 79999999999899999999999999999999999875 456889988887766
Q ss_pred ec
Q psy3928 91 SR 92 (115)
Q Consensus 91 ~~ 92 (115)
++
T Consensus 82 ~~ 83 (91)
T 2lxi_A 82 PK 83 (91)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 31
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=108.15 Aligned_cols=85 Identities=19% Similarity=0.290 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEE-EeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYV-SLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~-~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
...++|||+|||..+++++|+++|..||.+..+ .++.++.++.++|||||+|.+.++|++|+..||+..+.|+.+.|..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999 9999888999999999999999999999999999999999999888
Q ss_pred eeeccc
Q psy3928 89 TTSRLS 94 (115)
Q Consensus 89 ~~~~~~ 94 (115)
+.++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 776443
No 32
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.84 E-value=4e-20 Score=111.64 Aligned_cols=86 Identities=26% Similarity=0.285 Sum_probs=79.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..||+..+.|..+.|..
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44567999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred eeeccc
Q psy3928 89 TTSRLS 94 (115)
Q Consensus 89 ~~~~~~ 94 (115)
+.++..
T Consensus 99 a~~~~~ 104 (126)
T 3ex7_B 99 CFVRGP 104 (126)
T ss_dssp SEESSS
T ss_pred ecCCCC
Confidence 876544
No 33
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=109.84 Aligned_cols=86 Identities=23% Similarity=0.292 Sum_probs=79.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|++.|++..+.|+.+.|..
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34678999999999999999999999999999999999988899999999999999999999999999999999999988
Q ss_pred eeeccc
Q psy3928 89 TTSRLS 94 (115)
Q Consensus 89 ~~~~~~ 94 (115)
++++..
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 34
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=7e-21 Score=110.16 Aligned_cols=83 Identities=23% Similarity=0.282 Sum_probs=74.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCC--eEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCC----CCCc
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGK--VTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPC----PTDY 82 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~--i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~----~~~~ 82 (115)
...-.+|||+|||+.+++++|+++|++||. +..+++++++.++.++|||||+|.+.++|++|++.||+.. ++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 445679999999999999999999999995 6789999999899999999999999999999999999974 7888
Q ss_pred eeeEEEeee
Q psy3928 83 QSSILTTTS 91 (115)
Q Consensus 83 ~~~v~~~~~ 91 (115)
.+.|..++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 888877653
No 35
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=4.3e-20 Score=108.17 Aligned_cols=86 Identities=20% Similarity=0.250 Sum_probs=78.3
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCC-CCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKST-GKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~-~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
.....++|||+|||..+++++|+++|..|| +..+.++.++.+ +.++|||||+|.+.++|++|+ .+++..+.++.+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345678999999999999999999999999 999999998877 899999999999999999999 99999999999999
Q ss_pred EEeeecccc
Q psy3928 87 LTTTSRLSF 95 (115)
Q Consensus 87 ~~~~~~~~~ 95 (115)
..+.++...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 888775443
No 36
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=8.7e-20 Score=105.98 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=76.3
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEE--------EEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCC
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTY--------VSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP 79 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~--------~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 79 (115)
.....++|||+|||.++++++|+++|++||.+.. +.++.++.++.++|||||+|.+.++|++|++.|++..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456789999999999999999999999999999 99999988999999999999999999999999999999
Q ss_pred CCceeeEEEe
Q psy3928 80 TDYQSSILTT 89 (115)
Q Consensus 80 ~~~~~~v~~~ 89 (115)
.|+.++|..+
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999888765
No 37
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=1.6e-19 Score=105.76 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=77.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCC---ceee
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTD---YQSS 85 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~---~~~~ 85 (115)
....++|||+|||..+++++|+++|..||.|..+.+..++ ++.++|||||+|.+.++|++|+..|++..+.+ +.+.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 4467899999999999999999999999999999999988 89999999999999999999999999999998 8888
Q ss_pred EEEeeecc
Q psy3928 86 ILTTTSRL 93 (115)
Q Consensus 86 v~~~~~~~ 93 (115)
|..+.++.
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 88777543
No 38
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=5e-20 Score=106.44 Aligned_cols=83 Identities=22% Similarity=0.193 Sum_probs=77.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeee
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTS 91 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~ 91 (115)
.++|||+|||..+++++|+++|++||.+..+.+..++.++.++|||||+|.+.++|++|++.+++..++|+.+.|..+.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999999988899999999999999999999999999999999999988876
Q ss_pred ccc
Q psy3928 92 RLS 94 (115)
Q Consensus 92 ~~~ 94 (115)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 543
No 39
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.4e-20 Score=109.07 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=78.2
Q ss_pred cccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 7 NNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 7 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
..+...++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..+++ .+.++.+.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3456678999999999999999999999999999999999988899999999999999999999999998 899999999
Q ss_pred EEeeec
Q psy3928 87 LTTTSR 92 (115)
Q Consensus 87 ~~~~~~ 92 (115)
..+.+.
T Consensus 91 ~~a~~~ 96 (116)
T 2cqd_A 91 NLAYLG 96 (116)
T ss_dssp EESTTT
T ss_pred EEcccC
Confidence 887653
No 40
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7e-20 Score=106.26 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=76.0
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeE-EEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCce----
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVT-YVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQ---- 83 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~-~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~---- 83 (115)
....++|||+|||.++++++|+++|.+||.+. .+.++.++.++.++|||||+|.+.++|++|++.||+..+.+..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34678999999999999999999999999999 9999999889999999999999999999999999999999988
Q ss_pred eeEEEeee
Q psy3928 84 SSILTTTS 91 (115)
Q Consensus 84 ~~v~~~~~ 91 (115)
+++..+++
T Consensus 86 l~v~~a~~ 93 (99)
T 2div_A 86 FKLNYATY 93 (99)
T ss_dssp CCEEETTC
T ss_pred EEEeecCC
Confidence 66666553
No 41
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=9.2e-20 Score=107.68 Aligned_cols=84 Identities=24% Similarity=0.285 Sum_probs=78.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||..+++++|+++|..||.+..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|..+.|..
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34567899999999999999999999999999999999888999999999999999999999999999999999999888
Q ss_pred eeec
Q psy3928 89 TTSR 92 (115)
Q Consensus 89 ~~~~ 92 (115)
+.++
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 7764
No 42
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=105.75 Aligned_cols=90 Identities=22% Similarity=0.247 Sum_probs=78.4
Q ss_pred cccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 7 NNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 7 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
......++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+.. +..++|+.+.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEE
Confidence 3455678999999999999999999999999999999999988899999999999999999999994 56788888888
Q ss_pred EEeeeccccCCC
Q psy3928 87 LTTTSRLSFGIT 98 (115)
Q Consensus 87 ~~~~~~~~~~~~ 98 (115)
..+.++.....+
T Consensus 88 ~~a~~~~~~~~~ 99 (103)
T 2cqg_A 88 KLPNSKQSQDSG 99 (103)
T ss_dssp ECCCTTCCCCCS
T ss_pred EecCCCCcCCCC
Confidence 888776554433
No 43
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.82 E-value=7.3e-20 Score=114.56 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcC--CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYG--KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g--~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
..++|||+|||.++++++|+++|..|| .+..+.++.++.+|.++|||||+|.+.++|++|+..||+..+.|+.+.|..
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999988999999999999999999999999999999999999988
Q ss_pred eee
Q psy3928 89 TTS 91 (115)
Q Consensus 89 ~~~ 91 (115)
+.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 765
No 44
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2e-19 Score=105.05 Aligned_cols=87 Identities=20% Similarity=0.265 Sum_probs=77.6
Q ss_pred cccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 7 NNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 7 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
......++|||+|||..+++++|+++|..||.|..+.++.++ +.++|||||+|.+.++|++|+..|++..+.|+.+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345667899999999999999999999999999999998875 337899999999999999999999999999999999
Q ss_pred EEeeecccc
Q psy3928 87 LTTTSRLSF 95 (115)
Q Consensus 87 ~~~~~~~~~ 95 (115)
..+.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 888775443
No 45
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=1.1e-19 Score=108.43 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=72.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeee
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTS 91 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~ 91 (115)
..+|||+|||.++++++|+++|..||.|..++|+.++ +.++|||||+|.+.++|++|++.|++..+.|+.+.|..+.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999885 45899999999999999999999999999999999987765
Q ss_pred c
Q psy3928 92 R 92 (115)
Q Consensus 92 ~ 92 (115)
+
T Consensus 83 ~ 83 (115)
T 4f25_A 83 R 83 (115)
T ss_dssp C
T ss_pred c
Confidence 4
No 46
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.3e-20 Score=105.63 Aligned_cols=82 Identities=22% Similarity=0.214 Sum_probs=75.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||..+++++|+++|..||.+..+.++.++.++.++|||||+|.+.++|++|+..||+..+.|+.+.|..
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34567999999999999999999999999999999999988899999999999999999999999999999999888776
Q ss_pred ee
Q psy3928 89 TT 90 (115)
Q Consensus 89 ~~ 90 (115)
++
T Consensus 92 a~ 93 (95)
T 2cqc_A 92 PS 93 (95)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 47
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=1.8e-19 Score=112.44 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||..+++++|+++|..||.|..+.|+.++.++.+++||||+|.+.++|++|+..|++..+.+..+.|..+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999888999999999999999999999999999999999999988
Q ss_pred eec
Q psy3928 90 TSR 92 (115)
Q Consensus 90 ~~~ 92 (115)
++.
T Consensus 117 ~~~ 119 (156)
T 1h2v_Z 117 AGF 119 (156)
T ss_dssp SCC
T ss_pred CCC
Confidence 763
No 48
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3e-20 Score=108.66 Aligned_cols=84 Identities=25% Similarity=0.310 Sum_probs=78.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
+...++|||+|||..+++++|+++|..||.+..+.+..++.++.++|||||+|.+.++|++|++.+++..+.|+.+.|..
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34458899999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred eeec
Q psy3928 89 TTSR 92 (115)
Q Consensus 89 ~~~~ 92 (115)
+.++
T Consensus 85 a~~~ 88 (104)
T 1p1t_A 85 AASE 88 (104)
T ss_dssp TTCT
T ss_pred CCCc
Confidence 7764
No 49
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.4e-20 Score=108.22 Aligned_cols=86 Identities=21% Similarity=0.193 Sum_probs=78.3
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+.. ++..+.|+.+.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 456778999999999999999999999999999999999988999999999999999999999999 9999999988887
Q ss_pred Eeeeccc
Q psy3928 88 TTTSRLS 94 (115)
Q Consensus 88 ~~~~~~~ 94 (115)
.+.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 7765443
No 50
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=103.32 Aligned_cols=81 Identities=26% Similarity=0.342 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCC-eeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGK-LKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~-~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
..++|||+|||.++++++|+++|.+||.+..+.+..++.++. ++|+|||+|.+.++|++|+..||+..+.|+.+.+..+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999876665 8999999999999999999999999999999998877
Q ss_pred ee
Q psy3928 90 TS 91 (115)
Q Consensus 90 ~~ 91 (115)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 51
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.8e-20 Score=105.34 Aligned_cols=82 Identities=28% Similarity=0.248 Sum_probs=76.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|.+||.+..+.+..++.++.++|||||+|.+.++|++|++.||+..+.|+.+.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999988887
Q ss_pred Ee
Q psy3928 88 TT 89 (115)
Q Consensus 88 ~~ 89 (115)
.+
T Consensus 92 ~a 93 (94)
T 2e5h_A 92 IA 93 (94)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 52
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=4.5e-20 Score=112.31 Aligned_cols=85 Identities=21% Similarity=0.258 Sum_probs=78.2
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEE--EEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCC----CCCC
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTY--VSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNP----CPTD 81 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~--~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~----~~~~ 81 (115)
.....++|||+|||.++++++|+++|.+||.+.. ++|+.++.++.++|||||+|.+. +|.+|+..||+. .++|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999976 99999998999999999999999 999999999999 9999
Q ss_pred ceeeEEEeeecc
Q psy3928 82 YQSSILTTTSRL 93 (115)
Q Consensus 82 ~~~~v~~~~~~~ 93 (115)
+.+.|..++++.
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999998887653
No 53
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=2.4e-19 Score=105.32 Aligned_cols=82 Identities=21% Similarity=0.213 Sum_probs=76.1
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|.+||.|..+.++.++ ++.++|||||+|.+.++|++|++.|++..+.|+.+.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34557899999999999999999999999999999999988 99999999999999999999999999999999998887
Q ss_pred Eee
Q psy3928 88 TTT 90 (115)
Q Consensus 88 ~~~ 90 (115)
.++
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 54
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=1.8e-19 Score=102.27 Aligned_cols=81 Identities=17% Similarity=0.261 Sum_probs=72.5
Q ss_pred cccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 7 NNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 7 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
......++|||+|||..+++++|+++|.+||.+..+.++.++.++.++|||||+|.+.++|++|++. ++..++|+.+.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEE
Confidence 3456778999999999999999999999999999999999988899999999999999999999975 667788888776
Q ss_pred EE
Q psy3928 87 LT 88 (115)
Q Consensus 87 ~~ 88 (115)
..
T Consensus 85 ~~ 86 (87)
T 3s7r_A 85 KK 86 (87)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 55
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=8.4e-20 Score=109.07 Aligned_cols=81 Identities=21% Similarity=0.175 Sum_probs=75.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||.++++++|+++|..||.+..+.+..++.++.++|||||+|.+.++|++|++.||+..+.|+.++|..
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45568999999999999999999999999999999999888899999999999999999999999999999999888775
Q ss_pred e
Q psy3928 89 T 89 (115)
Q Consensus 89 ~ 89 (115)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 4
No 56
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=1.2e-19 Score=103.35 Aligned_cols=80 Identities=25% Similarity=0.298 Sum_probs=74.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..++|||+|||.++++++|+++|.+||.+..+.+..++.++.++|||||+|.+.++|++|+ .+++..+.|+.+.|..++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3478999999999999999999999999999999998889999999999999999999999 999999999999888766
Q ss_pred e
Q psy3928 91 S 91 (115)
Q Consensus 91 ~ 91 (115)
+
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 57
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=103.99 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=75.2
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|.+||.|..+.+..++ ++.++|||||+|.+.++|++|++.|++..+.|+.+.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 44566899999999999999999999999999999999988 48999999999999999999999999999999988877
Q ss_pred Eee
Q psy3928 88 TTT 90 (115)
Q Consensus 88 ~~~ 90 (115)
.++
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 654
No 58
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=1.1e-19 Score=110.51 Aligned_cols=84 Identities=21% Similarity=0.211 Sum_probs=77.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..++|+.+.|..
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999988877
Q ss_pred eeec
Q psy3928 89 TTSR 92 (115)
Q Consensus 89 ~~~~ 92 (115)
++++
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 6653
No 59
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=106.02 Aligned_cols=80 Identities=24% Similarity=0.258 Sum_probs=73.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
+...++|||+|||.++++++|+++|++||.|..+.++.++. +.++|||||+|.+.++|++|+. +++..++|+.+.|..
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999885 9999999999999999999999 899999999998876
Q ss_pred ee
Q psy3928 89 TT 90 (115)
Q Consensus 89 ~~ 90 (115)
..
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 54
No 60
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=7e-19 Score=104.42 Aligned_cols=83 Identities=22% Similarity=0.236 Sum_probs=76.9
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|..||.|..+.+..++ ++.++|||||+|.+.++|++|+..|++..+.++.+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34557899999999999999999999999999999999987 69999999999999999999999999999999999998
Q ss_pred Eeee
Q psy3928 88 TTTS 91 (115)
Q Consensus 88 ~~~~ 91 (115)
.++.
T Consensus 90 ~a~~ 93 (114)
T 2do0_A 90 MDER 93 (114)
T ss_dssp ECSC
T ss_pred Eccc
Confidence 7764
No 61
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.1e-19 Score=104.28 Aligned_cols=85 Identities=16% Similarity=0.145 Sum_probs=75.9
Q ss_pred cccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 7 NNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 7 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
......++|||+|||..+++++|+++|.+||.|..+.+..++ +.++|||||+|.+.++|++|+..|++..+.|+.+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 345667899999999999999999999999999999998875 336899999999999999999999999999999998
Q ss_pred EEeeecc
Q psy3928 87 LTTTSRL 93 (115)
Q Consensus 87 ~~~~~~~ 93 (115)
..++++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqi_A 88 NWATTPS 94 (103)
T ss_dssp EECCCTT
T ss_pred EECCCCc
Confidence 8877643
No 62
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=2.8e-19 Score=111.66 Aligned_cols=84 Identities=24% Similarity=0.317 Sum_probs=78.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|+.|+..||+..+.|+.+.|..+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred eecc
Q psy3928 90 TSRL 93 (115)
Q Consensus 90 ~~~~ 93 (115)
++..
T Consensus 148 ~~~~ 151 (158)
T 2kn4_A 148 RYGR 151 (158)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7643
No 63
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=6.5e-19 Score=100.82 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=75.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||.++++++|+++|.+||.+..+.+..+ ++.++|||||+|.+.++|++|+..|++..+.|+.+.|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999988873 789999999999999999999999999999999988887
Q ss_pred eeec
Q psy3928 89 TTSR 92 (115)
Q Consensus 89 ~~~~ 92 (115)
+++.
T Consensus 83 a~~~ 86 (92)
T 2dgv_A 83 DRNA 86 (92)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 7653
No 64
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-21 Score=116.60 Aligned_cols=88 Identities=19% Similarity=0.215 Sum_probs=79.7
Q ss_pred cccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEE--------EEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCC
Q psy3928 7 NNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTY--------VSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPC 78 (115)
Q Consensus 7 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~--------~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 78 (115)
+...+.++|||+|||..+++++|+++|..||.+.. +.++.++.++.++|||||+|.+.++|++|+..||+..
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 34556789999999999999999999999999988 8888888789999999999999999999999999999
Q ss_pred CCCceeeEEEeeeccc
Q psy3928 79 PTDYQSSILTTTSRLS 94 (115)
Q Consensus 79 ~~~~~~~v~~~~~~~~ 94 (115)
+.|+.+.|..++++..
T Consensus 82 ~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 82 FSGNPIKVSFATRRAD 97 (116)
Confidence 9999999888876543
No 65
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.1e-19 Score=104.73 Aligned_cols=75 Identities=12% Similarity=0.216 Sum_probs=69.2
Q ss_pred cccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCc
Q psy3928 7 NNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDY 82 (115)
Q Consensus 7 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~ 82 (115)
......++|||+|||.++++++|+++|..||.|..+.++.++ ++.++|||||+|.+.++|++|+..||+..+.+.
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 344567899999999999999999999999999999999998 899999999999999999999999999998543
No 66
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=108.00 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=77.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+.. ++..+.|+.+.|..+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 348999999999999999999999999999999999988899999999999999999999998 9999999999988887
Q ss_pred ecccc
Q psy3928 91 SRLSF 95 (115)
Q Consensus 91 ~~~~~ 95 (115)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 65543
No 67
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1e-19 Score=105.37 Aligned_cols=83 Identities=19% Similarity=0.184 Sum_probs=75.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||..+++++|+++|..||.+..+.++.++.++.++|||||+|.+.++|++|++.|++..+.|+.++|..
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34567999999999999999999999999998777778777999999999999999999999999999999999988887
Q ss_pred eee
Q psy3928 89 TTS 91 (115)
Q Consensus 89 ~~~ 91 (115)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 654
No 68
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=106.17 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=74.8
Q ss_pred cccCCCCEEEEcCCCCCC------CHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCC
Q psy3928 7 NNKKYGRVVLKEKLPPEA------EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPT 80 (115)
Q Consensus 7 ~~~~~~~~l~V~~l~~~~------~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~ 80 (115)
......++|||+|||..+ ++++|+++|++||.|..+.++ +.+|.++|||||+|.+.++|++|+..|||..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 345557899999999999 679999999999999999988 348899999999999999999999999999999
Q ss_pred Cc-eeeEEEeeecc
Q psy3928 81 DY-QSSILTTTSRL 93 (115)
Q Consensus 81 ~~-~~~v~~~~~~~ 93 (115)
|+ .+.|..+....
T Consensus 88 g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 88 KQHTFRVNLFTDFD 101 (105)
T ss_dssp TTCEEEEECSCCCC
T ss_pred CCceEEEEEcchHh
Confidence 98 88887766443
No 69
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=1.7e-19 Score=99.74 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=69.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 14 VVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 14 ~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
+|||+|||.++++++|+++|++||.+..+.++.++.++.++|||||+|.+.++|++|++ +++..++|+.+.+..
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 48999999999999999999999999999999988889999999999999999999998 999999999887753
No 70
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.9e-20 Score=104.19 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=70.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceee
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSS 85 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~ 85 (115)
...++|||+|||.++++++|+++|.+||.+..+.++.++.++.++|||||+|.+.++|++|++.||+..+.++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 78 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK 78 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEe
Confidence 4678999999999999999999999999999999999988899999999999999999999999999988887654
No 71
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1e-18 Score=102.39 Aligned_cols=82 Identities=26% Similarity=0.259 Sum_probs=74.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEE-EEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTY-VSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~-~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
....++|||+|||..+++++|+++|.+||.+.. +.|+.+ .+++++|||||+|.+.++|++|+.. ++..+.++.+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 355789999999999999999999999999987 888887 5899999999999999999999998 9999999999988
Q ss_pred Eeeec
Q psy3928 88 TTTSR 92 (115)
Q Consensus 88 ~~~~~ 92 (115)
.+..+
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 77653
No 72
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=1.1e-19 Score=104.72 Aligned_cols=81 Identities=20% Similarity=0.164 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||.++++++|+++|.+||.+..+.++.++.++.++|||||+|.+.++|++|++.||+..+.|+.++|...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 44689999999999999999999999999988888888888999999999999999999999999999999999888765
Q ss_pred e
Q psy3928 90 T 90 (115)
Q Consensus 90 ~ 90 (115)
+
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 73
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=107.03 Aligned_cols=85 Identities=18% Similarity=0.164 Sum_probs=75.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHH---HHhhhcCCeEEEEeceeCCCC---CeeeEEEEEecCHHHHHHHHHhhCCCCCCCc
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIE---SVFSKYGKVTYVSLPKFKSTG---KLKGFAFVEFSTKEEATKALELGLNPCPTDY 82 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~---~~f~~~g~i~~~~i~~~~~~~---~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~ 82 (115)
....++|||+|||..+++++|+ ++|.+||.|..+.+..++.++ .++|||||+|.+.++|++|++.||+..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456799999999999999999 999999999999998876543 5669999999999999999999999999999
Q ss_pred eeeEEEeeecc
Q psy3928 83 QSSILTTTSRL 93 (115)
Q Consensus 83 ~~~v~~~~~~~ 93 (115)
.++|..++++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99988877654
No 74
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.80 E-value=7.4e-20 Score=104.47 Aligned_cols=80 Identities=25% Similarity=0.292 Sum_probs=73.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeeec
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTSR 92 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~~ 92 (115)
++|||+|||.++++++|+++|++||.+..+.+..++.++.++|||||+|.+.+ |++|+..+|+..+.|+.+.+..+.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999999888999999999999999 99999999999999999999887764
Q ss_pred c
Q psy3928 93 L 93 (115)
Q Consensus 93 ~ 93 (115)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 75
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=6.6e-19 Score=110.93 Aligned_cols=85 Identities=24% Similarity=0.266 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||..+++.+|+.+|.+||.|..+.|+.++.++.++|||||+|.+.++|+.|+..||+..+.|..+.|..+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34578999999999999999999999999999999999889999999999999999999999999999999999999888
Q ss_pred eeccc
Q psy3928 90 TSRLS 94 (115)
Q Consensus 90 ~~~~~ 94 (115)
.++..
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 76443
No 76
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.5e-19 Score=100.74 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=75.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||.++++++|+++|..| .+..+.++.+ .++.++|+|||+|.+.++|++|+. +++..+.|+.+.|..
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 8999999988 589999999999999999999999 999999999999888
Q ss_pred eeecc
Q psy3928 89 TTSRL 93 (115)
Q Consensus 89 ~~~~~ 93 (115)
++++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 77653
No 77
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=104.59 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=73.4
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeC-CCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFK-STGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~-~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
.....++|||+|||.++++++|+++|..|| +..+.+..++ .+++++|||||+|.+.++|++|+ .+++..+.|+.+.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345678999999999999999999999999 9999999987 58999999999999999999999 89999999999988
Q ss_pred EEeeec
Q psy3928 87 LTTTSR 92 (115)
Q Consensus 87 ~~~~~~ 92 (115)
..++++
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 877654
No 78
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=100.16 Aligned_cols=72 Identities=25% Similarity=0.438 Sum_probs=66.1
Q ss_pred CEEEEcCCCCCC------CHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCc-eee
Q psy3928 13 RVVLKEKLPPEA------EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDY-QSS 85 (115)
Q Consensus 13 ~~l~V~~l~~~~------~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~-~~~ 85 (115)
++|||+|||..+ ++++|+++|++||.+..+.++ +.+|.++|||||+|.+.++|++|+..||+..+.|+ .++
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 679999999999999999887 34889999999999999999999999999999998 765
Q ss_pred E
Q psy3928 86 I 86 (115)
Q Consensus 86 v 86 (115)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 4
No 79
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=3.3e-19 Score=105.36 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=74.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|..||.+..+.++.++.++.++|||||+|.+.++|++|+..++ ..++|+.+.+.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999875 88899998888
Q ss_pred Eeeecc
Q psy3928 88 TTTSRL 93 (115)
Q Consensus 88 ~~~~~~ 93 (115)
.+.++.
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 777543
No 80
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-18 Score=102.06 Aligned_cols=81 Identities=23% Similarity=0.247 Sum_probs=72.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||.++++++|+++|.+||. ..+.|+.++ +++++|||||+|.+.++|++|+. +++..+.++.+.|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 345689999999999999999999999994 489999988 89999999999999999999995 799999999988877
Q ss_pred eeec
Q psy3928 89 TTSR 92 (115)
Q Consensus 89 ~~~~ 92 (115)
..+.
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 6643
No 81
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=2.5e-19 Score=109.63 Aligned_cols=84 Identities=24% Similarity=0.319 Sum_probs=78.0
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..|++..+.|+.+.|..
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 123 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 123 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567899999999999999999999999999999999888899999999999999999999999999999999999988
Q ss_pred eeec
Q psy3928 89 TTSR 92 (115)
Q Consensus 89 ~~~~ 92 (115)
+++.
T Consensus 124 a~~~ 127 (135)
T 2lea_A 124 ARYG 127 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7764
No 82
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=1.2e-18 Score=104.90 Aligned_cols=83 Identities=19% Similarity=0.237 Sum_probs=77.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||..+++++|+++|..||.|..+.+..++ ++.++|||||+|.+.++|++|+..+++..+.|+.+.|..+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 445799999999999999999999999999999999988 8999999999999999999999999999999999999887
Q ss_pred eecc
Q psy3928 90 TSRL 93 (115)
Q Consensus 90 ~~~~ 93 (115)
.+..
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 7643
No 83
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=102.70 Aligned_cols=83 Identities=25% Similarity=0.283 Sum_probs=73.6
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||.++++++|+++|.+||.|..+.+.. ++.+++||||+|.+.++|++|++.||+..+.++.+.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345668999999999999999999999999999998854 45678999999999999999999999999999998888
Q ss_pred Eeeecc
Q psy3928 88 TTTSRL 93 (115)
Q Consensus 88 ~~~~~~ 93 (115)
.++++.
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 777543
No 84
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=8.2e-19 Score=105.57 Aligned_cols=80 Identities=19% Similarity=0.263 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+ .+++..+.|+.+.|..++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4589999999999999999999999999999999999889999999999999999999999 899999999999888776
Q ss_pred e
Q psy3928 91 S 91 (115)
Q Consensus 91 ~ 91 (115)
+
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 85
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.7e-19 Score=102.44 Aligned_cols=82 Identities=16% Similarity=0.084 Sum_probs=74.0
Q ss_pred cCCCCEEEEcCCCCCCCHHHHH----HHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCcee
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIE----SVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQS 84 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~----~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~ 84 (115)
....++|||+|||..+++++|+ ++|.+||.|..+.++.++.+ ++||||+|.+.++|++|++.||+..+.|+.+
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456899999999999999999 99999999999999988744 7899999999999999999999999999999
Q ss_pred eEEEeeecc
Q psy3928 85 SILTTTSRL 93 (115)
Q Consensus 85 ~v~~~~~~~ 93 (115)
+|..++++.
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 988876543
No 86
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-19 Score=107.52 Aligned_cols=82 Identities=21% Similarity=0.211 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+ .+++..+.|+.+.|..++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3479999999999999999999999999999999999888999999999999999999999 999999999999998877
Q ss_pred ecc
Q psy3928 91 SRL 93 (115)
Q Consensus 91 ~~~ 93 (115)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 654
No 87
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.5e-19 Score=99.36 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=70.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
++|||+|||.++++++|+++|++||.+..+.++.++.++.++|+|||+|.+.++|++|+..++ ..++|+.+.+..+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999988889999999999999999999999999 8999998887653
No 88
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=106.46 Aligned_cols=82 Identities=13% Similarity=0.063 Sum_probs=75.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCe-EEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKV-TYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i-~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
....++|||+|||.++++++|+++|..||.+ ..+.|+.++ ++.++|||||+|.+.++|++|+.. ++..+.|+.+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4456899999999999999999999999998 789999988 999999999999999999999997 9999999999998
Q ss_pred Eeeec
Q psy3928 88 TTTSR 92 (115)
Q Consensus 88 ~~~~~ 92 (115)
.+.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 88764
No 89
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.5e-18 Score=101.16 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=74.5
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||.++++++|+++|..|+ .+.++.++.++.++|||||+|.+.++|++|++.|++..+.++.+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345678999999999999999999999874 56677777789999999999999999999999999999999999998
Q ss_pred Eeeeccc
Q psy3928 88 TTTSRLS 94 (115)
Q Consensus 88 ~~~~~~~ 94 (115)
.++++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 8876544
No 90
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=102.97 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=74.7
Q ss_pred hcccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceee
Q psy3928 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSS 85 (115)
Q Consensus 6 ~~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~ 85 (115)
.......++|||+|||..+++++|+++|..||.|..+.+..+ +|||||+|.+.++|++|+..|++..+.|+.+.
T Consensus 19 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 19 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 92 (109)
T ss_dssp HHSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 345566789999999999999999999999999999988754 68999999999999999999999999999999
Q ss_pred EEEeeecccc
Q psy3928 86 ILTTTSRLSF 95 (115)
Q Consensus 86 v~~~~~~~~~ 95 (115)
|..++++...
T Consensus 93 v~~a~~~~~~ 102 (109)
T 1x4g_A 93 CYWGKESPDM 102 (109)
T ss_dssp EECCCCCCSS
T ss_pred EEecCCCCCC
Confidence 8888775543
No 91
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-18 Score=101.88 Aligned_cols=85 Identities=18% Similarity=0.112 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCC-eEEEEec-eeCCCCCeeeEEEEEecCHHHHHHHHHhhC--CCCCCCceee
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGK-VTYVSLP-KFKSTGKLKGFAFVEFSTKEEATKALELGL--NPCPTDYQSS 85 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~-i~~~~i~-~~~~~~~~~g~~fv~f~~~~~a~~al~~l~--~~~~~~~~~~ 85 (115)
...++|||+|||..+++++|+++|..||. +..+.++ .++.++.++|||||+|.+.++|+.|+..|+ +..+.|+.+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35679999999999999999999999998 9999988 777788999999999999999999999996 5889999999
Q ss_pred EEEeeeccc
Q psy3928 86 ILTTTSRLS 94 (115)
Q Consensus 86 v~~~~~~~~ 94 (115)
|..++++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 998877544
No 92
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=101.75 Aligned_cols=82 Identities=23% Similarity=0.289 Sum_probs=72.7
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|.+||.| .++.+ .++.++|||||+|.+.++|++|+..|++..+.++.+.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44567899999999999999999999999966 55655 488899999999999999999999999999999999988
Q ss_pred Eeeecc
Q psy3928 88 TTTSRL 93 (115)
Q Consensus 88 ~~~~~~ 93 (115)
.++++.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 887653
No 93
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.7e-18 Score=97.99 Aligned_cols=78 Identities=22% Similarity=0.257 Sum_probs=70.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||.++++++|+++|.+||.+..+.+. ++||||+|.+.++|++|+..+++..+.++.++|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999886 46999999999999999999999999999999888
Q ss_pred eeeccc
Q psy3928 89 TTSRLS 94 (115)
Q Consensus 89 ~~~~~~ 94 (115)
++++..
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 776544
No 94
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-19 Score=106.03 Aligned_cols=86 Identities=21% Similarity=0.210 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||..+++++|+++|..||.+..+.+..+..++.++|||||+|.+.++|++|+..|++..+.|+.+.|..+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 34589999999999999999999999998843322222227889999999999999999999999999999999999988
Q ss_pred eecccc
Q psy3928 90 TSRLSF 95 (115)
Q Consensus 90 ~~~~~~ 95 (115)
+++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 875443
No 95
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=8.2e-19 Score=107.36 Aligned_cols=80 Identities=25% Similarity=0.333 Sum_probs=74.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||..+++++|+++|.+||.+..+.++.++.++.++|||||+|.+.++|++|++.+++..+.|+.++|..
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999998887754
No 96
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=104.09 Aligned_cols=83 Identities=22% Similarity=0.294 Sum_probs=75.4
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||.++++++|+++|..||.|..+.+..++ +.++|||||+|.+.++|++|+..|++..++|+.+.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999998875 4588999999999999999999999999999999988
Q ss_pred Eeeec
Q psy3928 88 TTTSR 92 (115)
Q Consensus 88 ~~~~~ 92 (115)
.++++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 87754
No 97
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.6e-19 Score=102.51 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=70.7
Q ss_pred cCCCCEEEEcCCCC-CCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCC--CCCceee
Q psy3928 9 KKYGRVVLKEKLPP-EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPC--PTDYQSS 85 (115)
Q Consensus 9 ~~~~~~l~V~~l~~-~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~--~~~~~~~ 85 (115)
..+.++|||+|||. .+++++|+++|.+||.|..+.++.+ +++|||+|.+.++|++|++.|++.. +.|+.+.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34568999999999 9999999999999999999998754 3799999999999999999998754 8999999
Q ss_pred EEEeeecccc
Q psy3928 86 ILTTTSRLSF 95 (115)
Q Consensus 86 v~~~~~~~~~ 95 (115)
|..++.....
T Consensus 86 V~~a~~~~~~ 95 (102)
T 1x4d_A 86 VHLSQKYKRI 95 (102)
T ss_dssp EEEECCCTTS
T ss_pred EEECCCCCCC
Confidence 9888764443
No 98
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=9.2e-19 Score=115.61 Aligned_cols=81 Identities=12% Similarity=0.156 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcC--CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYG--KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g--~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
..++|||+|||..+++++|+++|..|| .|..+.|+.++.+++++|||||+|.+.++|++|++.||+..+.++.|.|..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 999999999988999999999999999999999999999999999999987
Q ss_pred eee
Q psy3928 89 TTS 91 (115)
Q Consensus 89 ~~~ 91 (115)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 654
No 99
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-18 Score=101.44 Aligned_cols=78 Identities=22% Similarity=0.236 Sum_probs=70.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCC-----ce
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTD-----YQ 83 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~-----~~ 83 (115)
....++|||+|||.++++++|+++|.+||.|..+.++.+ |||||+|.+.++|++|++.||+..+.+ ..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345689999999999999999999999999999988754 799999999999999999999999998 78
Q ss_pred eeEEEeeecc
Q psy3928 84 SSILTTTSRL 93 (115)
Q Consensus 84 ~~v~~~~~~~ 93 (115)
+.|..++++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 8888777643
No 100
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=6.6e-19 Score=107.92 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=75.0
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCC---eEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceee
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGK---VTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSS 85 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~---i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~ 85 (115)
....++|||+|||.++++++|+++|.+||. +..+.++.++. |+++|||||+|.+.++|++|++ +++..+.++.+.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 445689999999999999999999999998 78899999885 9999999999999999999999 999999999999
Q ss_pred EEEeeec
Q psy3928 86 ILTTTSR 92 (115)
Q Consensus 86 v~~~~~~ 92 (115)
|..++++
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 8877543
No 101
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.78 E-value=2.4e-18 Score=122.75 Aligned_cols=85 Identities=14% Similarity=0.234 Sum_probs=79.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..++|||+|||..+++.+|..+|.+||.|..|.|+.++.++.++|||||+|.+.++|++|+..||+..|.|..|.|..+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 34799999999999999999999999999999999998899999999999999999999999999999999999999888
Q ss_pred ecccc
Q psy3928 91 SRLSF 95 (115)
Q Consensus 91 ~~~~~ 95 (115)
++...
T Consensus 181 ~~~~~ 185 (437)
T 3pgw_S 181 GRTVK 185 (437)
T ss_pred CCCCC
Confidence 65443
No 102
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=102.27 Aligned_cols=79 Identities=25% Similarity=0.246 Sum_probs=69.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCC--CCCCCceeeE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN--PCPTDYQSSI 86 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~--~~~~~~~~~v 86 (115)
....++|||+|||.++++++|+++|.+||.|..+.++.+ +|||||+|.+.++|++|++.+++ ..+.|+.++|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999998753 58999999999999999998875 5688998888
Q ss_pred EEeeecc
Q psy3928 87 LTTTSRL 93 (115)
Q Consensus 87 ~~~~~~~ 93 (115)
..++++.
T Consensus 87 ~~A~~~~ 93 (105)
T 1sjq_A 87 QFSNHKE 93 (105)
T ss_dssp CCCSSSS
T ss_pred EEcCCCC
Confidence 7776543
No 103
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4e-18 Score=99.55 Aligned_cols=82 Identities=24% Similarity=0.224 Sum_probs=70.7
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhC--CCCCCCceee
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGL--NPCPTDYQSS 85 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~--~~~~~~~~~~ 85 (115)
.....++|||+|||..+++++|+++|.+||.|..+.++.+ +|||||+|.+.++|++|++.++ +..+.|+.+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456689999999999999999999999999999987643 6899999999999999999875 5568999999
Q ss_pred EEEeeecccc
Q psy3928 86 ILTTTSRLSF 95 (115)
Q Consensus 86 v~~~~~~~~~ 95 (115)
|..++++...
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9888765443
No 104
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=1e-18 Score=104.60 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=74.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCC---eEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceee
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGK---VTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSS 85 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~---i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~ 85 (115)
....++|||+|||.++++++|+++|..||. +..+.|+.++. ++++|||||+|.+.++|++|++ +++..+.++.+.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 456789999999999999999999999998 88999999885 9999999999999999999999 999999999999
Q ss_pred EEEeee
Q psy3928 86 ILTTTS 91 (115)
Q Consensus 86 v~~~~~ 91 (115)
|..+..
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 987765
No 105
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.8e-19 Score=106.11 Aligned_cols=83 Identities=24% Similarity=0.259 Sum_probs=73.9
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||..+++++|+++|..||.+..+.++.+..++.++|||||+|.+.++|++|+. +|+..+.|+.+.|..
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456899999999999999999999999998775555555699999999999999999999999 999999999999988
Q ss_pred eeec
Q psy3928 89 TTSR 92 (115)
Q Consensus 89 ~~~~ 92 (115)
++..
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 7653
No 106
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.77 E-value=7.3e-19 Score=97.08 Aligned_cols=74 Identities=24% Similarity=0.393 Sum_probs=68.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 14 VVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 14 ~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
+|||+|||.++++++|+++|++||.+..+.++.++.++.++|||||+|.+.++|++|++. ++..+.|+.+.+..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 589999999999999999999999999999999888899999999999999999999995 88889999887754
No 107
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=4.3e-19 Score=109.09 Aligned_cols=82 Identities=24% Similarity=0.220 Sum_probs=72.9
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||.++++++|+++|.+|| +..+.|+.++. ++++|||||+|.+.++|++|+ .+++..+.++.+.|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34567999999999999999999999999 77999999884 999999999999999999999 7899999999998887
Q ss_pred eeecc
Q psy3928 89 TTSRL 93 (115)
Q Consensus 89 ~~~~~ 93 (115)
+.++.
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 76543
No 108
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.77 E-value=9e-19 Score=103.12 Aligned_cols=83 Identities=16% Similarity=0.159 Sum_probs=75.5
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCC---eEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCcee
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGK---VTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQS 84 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~---i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~ 84 (115)
.....++|||+|||.++++++|+++|..||. +..+.++.++. |.++|||||+|.+.++|++|+. +++..+.|+.+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999999999999999999987 88999999885 9999999999999999999999 99999999999
Q ss_pred eEEEeeec
Q psy3928 85 SILTTTSR 92 (115)
Q Consensus 85 ~v~~~~~~ 92 (115)
.|..+.++
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 98887653
No 109
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=5.1e-18 Score=98.00 Aligned_cols=78 Identities=15% Similarity=0.286 Sum_probs=69.6
Q ss_pred cCCCCEEEEcCCCC-CCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 9 KKYGRVVLKEKLPP-EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 9 ~~~~~~l~V~~l~~-~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
....++|||+|||. .+++++|+++|.+||.|..+.+. +|||||+|.+.++|+.|+..|++..+.|+.+.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999998873 5799999999999999999999999999999998
Q ss_pred Eeeeccc
Q psy3928 88 TTTSRLS 94 (115)
Q Consensus 88 ~~~~~~~ 94 (115)
.+++...
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 8876433
No 110
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.8e-18 Score=101.12 Aligned_cols=80 Identities=25% Similarity=0.234 Sum_probs=70.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCC--CCCCCceeeE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN--PCPTDYQSSI 86 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~--~~~~~~~~~v 86 (115)
....++|||+|||.++++++|+++|++||.|..+.++.+ +|||||+|.+.++|++|++.+++ ..+.|+.+.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 445689999999999999999999999999999998764 58999999999999999999874 5789999999
Q ss_pred EEeeeccc
Q psy3928 87 LTTTSRLS 94 (115)
Q Consensus 87 ~~~~~~~~ 94 (115)
..++++..
T Consensus 102 ~~a~~k~~ 109 (119)
T 2ad9_A 102 QFSNHKEL 109 (119)
T ss_dssp EECSSSSC
T ss_pred EEccCCCC
Confidence 98876543
No 111
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.3e-18 Score=97.19 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=70.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCC--CceeeE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPT--DYQSSI 86 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~--~~~~~v 86 (115)
....++|||+|||.++++++|+++|.+||.|..+.+..+ ++||||+|.+.++|++|++.||+..+. ++.+.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345689999999999999999999999999999988643 679999999999999999999999999 899988
Q ss_pred EEeeecc
Q psy3928 87 LTTTSRL 93 (115)
Q Consensus 87 ~~~~~~~ 93 (115)
..++++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 8877643
No 112
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.2e-18 Score=98.92 Aligned_cols=80 Identities=21% Similarity=0.243 Sum_probs=69.9
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCC--CCCceee
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPC--PTDYQSS 85 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~--~~~~~~~ 85 (115)
.....++|||+|||..+++++|+++|.+||.|..+.++.+ +|||||+|.+.++|++|++.+++.. +.|+.+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456789999999999999999999999999999987642 5899999999999999999987654 8999999
Q ss_pred EEEeeecc
Q psy3928 86 ILTTTSRL 93 (115)
Q Consensus 86 v~~~~~~~ 93 (115)
|..++.+.
T Consensus 85 V~~a~~~~ 92 (104)
T 1wex_A 85 FNYSTSKR 92 (104)
T ss_dssp EEECSSSS
T ss_pred EEEccCcc
Confidence 98887643
No 113
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.5e-18 Score=98.00 Aligned_cols=80 Identities=24% Similarity=0.240 Sum_probs=71.7
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|.+||.+..+.+..+ +|||||+|.+.++|++|++.|++..+.|+.+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3456689999999999999999999999999999988643 5899999999999999999999999999999988
Q ss_pred Eeeecc
Q psy3928 88 TTTSRL 93 (115)
Q Consensus 88 ~~~~~~ 93 (115)
.++++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 877643
No 114
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=9.7e-18 Score=101.62 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=72.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHH----HHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCcee
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIE----SVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQS 84 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~----~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~ 84 (115)
....++|||+|||..+++++|+ ++|++||.|..+.+.. ++.++|||||+|.+.++|+.|+..|||..+.|+.+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456899999999999998865 7999999999887742 67889999999999999999999999999999999
Q ss_pred eEEEeeecc
Q psy3928 85 SILTTTSRL 93 (115)
Q Consensus 85 ~v~~~~~~~ 93 (115)
.|..++.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 998887643
No 115
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.76 E-value=2e-17 Score=107.19 Aligned_cols=85 Identities=19% Similarity=0.235 Sum_probs=79.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||..+++++|+++|..||.|..+.+..++.++.++|+|||+|.+.++|.+|+..||+..+.|+.+.|..+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred eeccc
Q psy3928 90 TSRLS 94 (115)
Q Consensus 90 ~~~~~ 94 (115)
.++..
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87543
No 116
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.76 E-value=5.6e-18 Score=98.53 Aligned_cols=78 Identities=19% Similarity=0.174 Sum_probs=69.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCC--CCCceeeE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPC--PTDYQSSI 86 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~--~~~~~~~v 86 (115)
..+.++|||+|||..+++++|+++|.+||.+..+.+++ .+|+|||+|.+.++|.+|++.+++.. +.|+.+.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 44678999999999999999999999999999998864 25799999999999999999999886 77999888
Q ss_pred EEeeec
Q psy3928 87 LTTTSR 92 (115)
Q Consensus 87 ~~~~~~ 92 (115)
..++++
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 887653
No 117
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=5.1e-18 Score=98.70 Aligned_cols=76 Identities=25% Similarity=0.244 Sum_probs=70.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeeec
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTSR 92 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~~ 92 (115)
++|||+|||.++++++|+++|++||.+..+.+..+ ++|||||+|.+.++|++|+..|++..+.|..+.|..++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999988765 6789999999999999999999999999999999988764
Q ss_pred c
Q psy3928 93 L 93 (115)
Q Consensus 93 ~ 93 (115)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 118
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.76 E-value=9.8e-18 Score=109.27 Aligned_cols=82 Identities=17% Similarity=0.181 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||.++++++|+++|++||.|..++|+.++.+++++|||||+|.+.++|++|++.+++..+.++.+++...
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34579999999999999999999999999999999999989999999999999999999999999999999998887665
Q ss_pred ee
Q psy3928 90 TS 91 (115)
Q Consensus 90 ~~ 91 (115)
..
T Consensus 93 ~~ 94 (213)
T 4f02_A 93 QR 94 (213)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 119
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=2e-18 Score=97.72 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=67.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
...|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.++++|++|++.||+..+.|+.|++..++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46799999999999999999999999999998854 57999999999999999999999999999999987764
No 120
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=96.99 Aligned_cols=80 Identities=19% Similarity=0.242 Sum_probs=70.3
Q ss_pred cccCCCCEEEEcCCCCCCCHHHHHHHhhhc--CCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCcee
Q psy3928 7 NNKKYGRVVLKEKLPPEAEHDYIESVFSKY--GKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQS 84 (115)
Q Consensus 7 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~--g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~ 84 (115)
......++|||+|||..+++++|+++|.+| |.+..+.+. ++||||+|.+.++|++|+..||+..+.|+.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999 888888764 4699999999999999999999999999999
Q ss_pred eEEEeeeccc
Q psy3928 85 SILTTTSRLS 94 (115)
Q Consensus 85 ~v~~~~~~~~ 94 (115)
.|..++++..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 8888776543
No 121
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-19 Score=103.64 Aligned_cols=81 Identities=17% Similarity=0.112 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||.++++++|+++|..||.+.. .++.++.++.++|||||+|.+.++|++|++ +++..+.|+.+.|..+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35689999999999999999999999998876 566666678899999999999999999999 9999999999988877
Q ss_pred eec
Q psy3928 90 TSR 92 (115)
Q Consensus 90 ~~~ 92 (115)
+++
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 122
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=1.8e-17 Score=103.33 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=75.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeee
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTS 91 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~ 91 (115)
.++|||+|||.++++++|+++|..||.+..+.+..++.++.++|+|||+|.+.++|++|++.+++..+.+..+.+....+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999999988999999999999999999999999999999999988877664
No 123
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=2.1e-18 Score=100.56 Aligned_cols=83 Identities=22% Similarity=0.285 Sum_probs=74.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||.++++++|+++|..||.+..+.++.++ ++.++|||||+|.+.++|++|+. ++..++|..+.+..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 99999999999999999999999 88888889888877
Q ss_pred eeeccc
Q psy3928 89 TTSRLS 94 (115)
Q Consensus 89 ~~~~~~ 94 (115)
+.++..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 766543
No 124
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=4.7e-18 Score=101.26 Aligned_cols=69 Identities=23% Similarity=0.269 Sum_probs=61.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceee
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSS 85 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~ 85 (115)
...++|||+|||.++++++|+++|.+||.|..+.++.+ |||||+|.+.++|++|++.||+..++|..+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 45689999999999999999999999999999988653 8999999999999999999999999998833
No 125
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=94.80 Aligned_cols=78 Identities=14% Similarity=0.188 Sum_probs=70.4
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|.+||.|..+.+.+ +||||+|.+.++|++|+..|++..+.|+.+.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345678999999999999999999999999999998863 399999999999999999999999999999988
Q ss_pred Eeeecc
Q psy3928 88 TTTSRL 93 (115)
Q Consensus 88 ~~~~~~ 93 (115)
.++++.
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 887653
No 126
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=1.6e-17 Score=98.63 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||..+++++|+++|..||.+..+.++.+ +.++|||||+|.+.++|++|+..||+..+.|+.+.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45689999999999999999999999999999988754 455899999999999999999999999999999999988
Q ss_pred eeccc
Q psy3928 90 TSRLS 94 (115)
Q Consensus 90 ~~~~~ 94 (115)
.++..
T Consensus 83 ~~~~~ 87 (115)
T 3lqv_A 83 NANRA 87 (115)
T ss_dssp CHHHH
T ss_pred cCChh
Confidence 76443
No 127
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.75 E-value=1.4e-17 Score=106.03 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..++|||+|||..+++++|+++|..||.|..+.+..++ ++.++|||||+|.+.++|++|++.+++..+.|..+.|..+.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45799999999999999999999999999999999988 89999999999999999999999999999999999998877
Q ss_pred ecc
Q psy3928 91 SRL 93 (115)
Q Consensus 91 ~~~ 93 (115)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 643
No 128
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=98.49 Aligned_cols=78 Identities=24% Similarity=0.210 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||..+++++|+++|.+||.|..+.++. +++||||+|.+.++|+.|++.||+..+.|+.+.|..+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3457999999999999999999999999999998863 4579999999999999999999999999999999887
Q ss_pred eecc
Q psy3928 90 TSRL 93 (115)
Q Consensus 90 ~~~~ 93 (115)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 6543
No 129
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.6e-18 Score=98.92 Aligned_cols=78 Identities=14% Similarity=0.074 Sum_probs=69.0
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||.++++++|+++|..||.|..+.+. .++|||||+|.+.++|+.|+..|++..++|+.++|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34456899999999999999999999999999999886 346899999999999999999999999999988876
Q ss_pred Eeee
Q psy3928 88 TTTS 91 (115)
Q Consensus 88 ~~~~ 91 (115)
.+++
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 6554
No 130
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-17 Score=94.92 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=70.5
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|.+||.+..+.+.+ +||||+|.+.++|++|+..||+..+.|+.+.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345678999999999999999999999999999998863 399999999999999999999999999999888
Q ss_pred Eeeeccc
Q psy3928 88 TTTSRLS 94 (115)
Q Consensus 88 ~~~~~~~ 94 (115)
.++++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 8876443
No 131
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=5.2e-18 Score=100.59 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcC-CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....+|||+|||.++++++|+++|.+|| .+..+.+.. ..++|||||+|.+.++|++|++.||+..++|+.++|..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3457999999999999999999999999 899988753 34789999999999999999999999999999998887
Q ss_pred eee
Q psy3928 89 TTS 91 (115)
Q Consensus 89 ~~~ 91 (115)
++.
T Consensus 102 a~~ 104 (111)
T 2jvr_A 102 DDN 104 (111)
T ss_dssp SCC
T ss_pred CCC
Confidence 664
No 132
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.74 E-value=1.8e-17 Score=103.66 Aligned_cols=81 Identities=15% Similarity=0.259 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..++|||+|||.++++++|+++|+.||.+..+.+..++.++.++|||||+|.+.++|++|++.+++..+.|+.+.+....
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999998888766
Q ss_pred e
Q psy3928 91 S 91 (115)
Q Consensus 91 ~ 91 (115)
+
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 4
No 133
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=2.2e-17 Score=96.44 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=70.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||.++++++|+++|.+||.|..+.++ ++||||+|.+.++|++|+..|++..+.++.+.|..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3456899999999999999999999999999999885 34999999999999999999999999999999998
Q ss_pred eeeccc
Q psy3928 89 TTSRLS 94 (115)
Q Consensus 89 ~~~~~~ 94 (115)
++++..
T Consensus 80 a~~~~~ 85 (103)
T 2dgu_A 80 AKPPDQ 85 (103)
T ss_dssp CCCCCC
T ss_pred cCCCcc
Confidence 876543
No 134
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=96.13 Aligned_cols=79 Identities=14% Similarity=0.126 Sum_probs=69.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||..+++++|+++|..||.+. +.++. +.++|||||+|.+.++|++|+..||+..+.|+.+.|..+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4468999999999999999999999999886 55543 356789999999999999999999999999999999887
Q ss_pred eecc
Q psy3928 90 TSRL 93 (115)
Q Consensus 90 ~~~~ 93 (115)
+++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 135
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=3e-18 Score=98.83 Aligned_cols=80 Identities=25% Similarity=0.352 Sum_probs=70.4
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||..+++++|+++|..||.+..+ ..++.++|||||+|.+.++|++|+..+++..+.|+.+.+.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34557899999999999999999999999977655 2378899999999999999999999999999999998888
Q ss_pred Eeeec
Q psy3928 88 TTTSR 92 (115)
Q Consensus 88 ~~~~~ 92 (115)
.+.++
T Consensus 87 ~a~~~ 91 (96)
T 1fjc_A 87 YTGEK 91 (96)
T ss_dssp ECSSS
T ss_pred EcCCC
Confidence 77653
No 136
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.1e-18 Score=102.31 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=72.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCe----EEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCcee
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKV----TYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQS 84 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i----~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~ 84 (115)
.....+|||+|||+++++++|+++|.+||.| ..+.|+.++ +|+++|||||+|.+.++|++|++. ++..+.++.+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 4567899999999999999999999999875 578888885 899999999999999999999997 8889999988
Q ss_pred eEEEeee
Q psy3928 85 SILTTTS 91 (115)
Q Consensus 85 ~v~~~~~ 91 (115)
.|..+++
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 8877765
No 137
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=1.7e-17 Score=97.99 Aligned_cols=74 Identities=26% Similarity=0.337 Sum_probs=68.0
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 11 YGRVVLKEKLPPE-AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 11 ~~~~l~V~~l~~~-~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
..++|||+|||.. +++++|+++|.+||.|..+.+ +++||||+|.+.++|++|+..|++..+.|..+.|..+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3479999999999 999999999999999999887 4689999999999999999999999999999999887
Q ss_pred eec
Q psy3928 90 TSR 92 (115)
Q Consensus 90 ~~~ 92 (115)
+++
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 138
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.3e-18 Score=99.43 Aligned_cols=78 Identities=21% Similarity=0.205 Sum_probs=71.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeee
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTS 91 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~ 91 (115)
..+|||+|||.++++++|+++|..| .+..+.|+.++ .|+++|+|||+|.+.++|++|+ .+++..+.++.+.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 89999999987 5999999999999999999999 6999999999988877665
Q ss_pred c
Q psy3928 92 R 92 (115)
Q Consensus 92 ~ 92 (115)
+
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 3
No 139
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.74 E-value=2e-17 Score=102.56 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=72.0
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|||..+++++|+++|.+||.|..+.++.+ ++|||||+|.+.++|+.|+..||+..+.|+.++|..
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999998764 578999999999999999999999999999999888
Q ss_pred eeec
Q psy3928 89 TTSR 92 (115)
Q Consensus 89 ~~~~ 92 (115)
++++
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7654
No 140
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.1e-17 Score=98.24 Aligned_cols=66 Identities=26% Similarity=0.466 Sum_probs=59.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCC---CCeeeEEEEEecCHHHHHHHHHhhC
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKST---GKLKGFAFVEFSTKEEATKALELGL 75 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~---~~~~g~~fv~f~~~~~a~~al~~l~ 75 (115)
....++|||+|||.++++++|+++|.+||.+. +.++.++.+ |.++|||||+|.+.++|++|++.++
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 34568999999999999999999999999999 888877666 7899999999999999999999983
No 141
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=6.3e-18 Score=97.54 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=72.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHH----HHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCcee
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIE----SVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQS 84 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~----~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~ 84 (115)
....++|||+|||.++++++|+ ++|.+||.+..+.+.. ++.++|||||+|.+.++|+.|+..|++..+.|+.+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999998863 56778999999999999999999999999999999
Q ss_pred eEEEeeec
Q psy3928 85 SILTTTSR 92 (115)
Q Consensus 85 ~v~~~~~~ 92 (115)
.+..+++.
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 98887654
No 142
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.73 E-value=1.3e-17 Score=100.91 Aligned_cols=79 Identities=25% Similarity=0.302 Sum_probs=70.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeE--EEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVT--YVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~--~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
....+|||+|||+++++++|+++|.+| .+. .+.|+.++. |+++|||||+|.+.++|++|++. ++..+.|+.+.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 456789999999999999999999999 677 899999885 99999999999999999999985 6688999998887
Q ss_pred Eeee
Q psy3928 88 TTTS 91 (115)
Q Consensus 88 ~~~~ 91 (115)
.+..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 7654
No 143
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.2e-17 Score=94.26 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=68.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||.++++++|+++|..||.+..+ +.++.++. ||||+|.+.++|++|+. +++..+.|+.+.|..+
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 455799999999999999999999999999987 44444555 99999999999999999 9999999999888766
Q ss_pred eeccc
Q psy3928 90 TSRLS 94 (115)
Q Consensus 90 ~~~~~ 94 (115)
.++..
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 55433
No 144
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.4e-17 Score=101.48 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=76.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
.....+|||+|||..+++++|+++|++||.+..+.+..++.++.++|+|||+|.+.++|.+|+..||+..+.|+.+.+..
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999988876
Q ss_pred ee
Q psy3928 89 TT 90 (115)
Q Consensus 89 ~~ 90 (115)
++
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 145
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=92.93 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=68.2
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhh-CCCCCCCceeeE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELG-LNPCPTDYQSSI 86 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l-~~~~~~~~~~~v 86 (115)
.+...++|||+|||..+++++|+++|.+||.+..+.+..+ +|||||+|.+.++|+.|+..| ++..+.|+.+.+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 4556789999999999999999999999999999988753 589999999999999999999 999999988887
Q ss_pred EEe
Q psy3928 87 LTT 89 (115)
Q Consensus 87 ~~~ 89 (115)
..+
T Consensus 82 ~~a 84 (85)
T 2ytc_A 82 KWG 84 (85)
T ss_dssp EEC
T ss_pred Eec
Confidence 654
No 146
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=95.74 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=68.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCC-eEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCC-CCCCCceeeE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGK-VTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN-PCPTDYQSSI 86 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~-i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~-~~~~~~~~~v 86 (115)
....++|||+|||.++++++|+++|.+||. +..+.+. ++|||||+|.+.++|++|++.||+ ..+.|+.+.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 345689999999999999999999999998 5555442 468999999999999999999999 8999999999
Q ss_pred EEeeeccc
Q psy3928 87 LTTTSRLS 94 (115)
Q Consensus 87 ~~~~~~~~ 94 (115)
..++++..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 88876543
No 147
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.73 E-value=1.7e-17 Score=97.85 Aligned_cols=77 Identities=21% Similarity=0.350 Sum_probs=69.4
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||.++++++|+++|.+||.|..+.+. +|||||+|.+.++|++|+..|++..+.|+.+.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999886 5799999999999999999999999999998887
Q ss_pred Eeeec
Q psy3928 88 TTTSR 92 (115)
Q Consensus 88 ~~~~~ 92 (115)
.++++
T Consensus 99 ~a~~~ 103 (108)
T 2jvo_A 99 YSKLP 103 (108)
T ss_dssp SCSCC
T ss_pred EecCC
Confidence 77653
No 148
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.73 E-value=9.8e-18 Score=100.96 Aligned_cols=77 Identities=9% Similarity=0.119 Sum_probs=69.0
Q ss_pred CEEEEcCC----CCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecC----HHH----HHHHHH--hhCCCC
Q psy3928 13 RVVLKEKL----PPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFST----KEE----ATKALE--LGLNPC 78 (115)
Q Consensus 13 ~~l~V~~l----~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~----~~~----a~~al~--~l~~~~ 78 (115)
..|||+|| |+.+++..|+.+|++||.|..+.++.|+.||.++|||||+|.+ ++. |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999995 333 788888 789999
Q ss_pred CCCceeeEEEe
Q psy3928 79 PTDYQSSILTT 89 (115)
Q Consensus 79 ~~~~~~~v~~~ 89 (115)
++|+.++|..-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999888753
No 149
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=5.3e-17 Score=93.99 Aligned_cols=76 Identities=16% Similarity=0.332 Sum_probs=68.5
Q ss_pred ccCCCCEEEEcCCCC-CCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 8 NKKYGRVVLKEKLPP-EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~-~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
.....++|||+|||. ++++++|+++|..||.+..+.+. +|||||+|.+.++|++|+..+++..+.|+.+.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678999999998 99999999999999999999883 679999999999999999999999999999988
Q ss_pred EEeee
Q psy3928 87 LTTTS 91 (115)
Q Consensus 87 ~~~~~ 91 (115)
..+++
T Consensus 90 ~~a~~ 94 (97)
T 2xnq_A 90 EVSSS 94 (97)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 87664
No 150
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.72 E-value=4.8e-17 Score=104.17 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||..+++++|+++|.+||.+..+.+..++.++.++|+|||+|.+.++|.+|+..|++..++|+.+.+..+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45689999999999999999999999999999999998889999999999999999999999999999999999998887
Q ss_pred eecc
Q psy3928 90 TSRL 93 (115)
Q Consensus 90 ~~~~ 93 (115)
.++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 151
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=5.4e-17 Score=103.80 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=75.5
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+.. ++..+.|+.+.+.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 344668999999999999999999999999999999999988899999999999999999999987 8888999988887
Q ss_pred Eeeec
Q psy3928 88 TTTSR 92 (115)
Q Consensus 88 ~~~~~ 92 (115)
...+.
T Consensus 88 ~~~~~ 92 (196)
T 1l3k_A 88 RAVSR 92 (196)
T ss_dssp ECCC-
T ss_pred cccCc
Confidence 76543
No 152
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.2e-17 Score=97.22 Aligned_cols=79 Identities=22% Similarity=0.288 Sum_probs=68.8
Q ss_pred cCCCCEEEEcCCCCC-CCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCC--CCCCCceee
Q psy3928 9 KKYGRVVLKEKLPPE-AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN--PCPTDYQSS 85 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~-~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~--~~~~~~~~~ 85 (115)
....++|||+|||.+ +++++|+++|.+||.|..+.+++ ++|||||+|.+.++|+.|++.|++ ..+.|+.+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345689999999998 99999999999999999998863 358999999999999999998864 458999999
Q ss_pred EEEeeecc
Q psy3928 86 ILTTTSRL 93 (115)
Q Consensus 86 v~~~~~~~ 93 (115)
|..++.+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 98887543
No 153
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=94.04 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEE-EeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYV-SLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~-~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
...++|||+|||..+++++|+++|..||.+..+ .++.++.++. |||+|.+.++|++|+..||+..+.|+.+.|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346899999999999999999999999999999 4776653333 99999999999999999999999999999988
Q ss_pred eeec
Q psy3928 89 TTSR 92 (115)
Q Consensus 89 ~~~~ 92 (115)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8765
No 154
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=5e-17 Score=101.21 Aligned_cols=79 Identities=20% Similarity=0.195 Sum_probs=72.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeeec
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTSR 92 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~~ 92 (115)
++|||+|||.++++++|+++|++||.+..+.++.++ ++.++|+|||+|.+.++|++|+..+++..+.+..+.+....+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999887 6788999999999999999999999999999999888776543
No 155
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.72 E-value=1.3e-16 Score=100.19 Aligned_cols=72 Identities=21% Similarity=0.238 Sum_probs=66.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCC--CeeeEEEEEecCHHHHHHHHHhhCCCCCCCc
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTG--KLKGFAFVEFSTKEEATKALELGLNPCPTDY 82 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~--~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~ 82 (115)
+.++|||+|||.++++++|+++|.+||.+..+.++.++.++ .++|||||+|.+.++|++|++.+++..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 75 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG 75 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC
Confidence 56899999999999999999999999999999999998776 8999999999999999999999999887643
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.71 E-value=8.7e-17 Score=102.83 Aligned_cols=84 Identities=18% Similarity=0.338 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..++|||+|||..+++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..++|+.+.|..+.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 457999999999999999999999999999999999988899999999999999999999987 7889999999998887
Q ss_pred ecccc
Q psy3928 91 SRLSF 95 (115)
Q Consensus 91 ~~~~~ 95 (115)
++...
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 76543
No 157
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.71 E-value=7.3e-17 Score=101.26 Aligned_cols=79 Identities=19% Similarity=0.227 Sum_probs=74.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...+|||+|||..+++++|+++|.+||.+..+.+..++.++.++|+|||+|.+.++|.+|+..||+..+.|+.+.|..+
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3588999999999999999999999999999999999889999999999999999999999999999999998887654
No 158
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=3.8e-16 Score=97.53 Aligned_cols=79 Identities=27% Similarity=0.414 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCC--ceeeEE
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTD--YQSSIL 87 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~--~~~~v~ 87 (115)
....+|||+|||..+++++|+++|.+||.+..+.+..++.++.++|+|||+|.+.++|.+|+..||+..+.| ..+.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 456899999999999999999999999999999999988889999999999999999999999999999988 777665
Q ss_pred E
Q psy3928 88 T 88 (115)
Q Consensus 88 ~ 88 (115)
.
T Consensus 167 ~ 167 (168)
T 1b7f_A 167 L 167 (168)
T ss_dssp E
T ss_pred e
Confidence 4
No 159
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=1.4e-16 Score=103.27 Aligned_cols=80 Identities=25% Similarity=0.230 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..++|||+|||.++++++|+++|..||.|..+.++.++.++.++|||||+|.+.++|++|+..+++..+.|+.+.+....
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45799999999999999999999999999999999988889999999999999999999999999999999998886544
No 160
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.70 E-value=5e-17 Score=101.59 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=75.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
...+|||+|||..+++++|+++|++||.+..+.+..++.++.++|+|||+|.+.++|++|++ +++..+.|+.+.|..+.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35689999999999999999999999999999999988789999999999999999999998 89999999999988877
Q ss_pred ec
Q psy3928 91 SR 92 (115)
Q Consensus 91 ~~ 92 (115)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 161
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=6.4e-17 Score=91.94 Aligned_cols=75 Identities=16% Similarity=0.232 Sum_probs=67.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..++|||+|||..+++++|+++|.+| .+..+.+. .++|||||+|.+.++|++|++.+|+..+.|+.+++..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46789999999999999999999999 89888873 567899999999999999999999999999999888765
Q ss_pred ec
Q psy3928 91 SR 92 (115)
Q Consensus 91 ~~ 92 (115)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=1.6e-16 Score=103.53 Aligned_cols=80 Identities=21% Similarity=0.238 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
...+|||+|||..+++++|+++|..||.|..+.++.++ +.++|||||+|.+.++|++|++.||+..++|+.+.|..++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999874 5579999999999999999999999999999999998876
Q ss_pred ec
Q psy3928 91 SR 92 (115)
Q Consensus 91 ~~ 92 (115)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 53
No 163
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=102.98 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=71.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEE--ecee---CCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCcee
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVS--LPKF---KSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQS 84 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~--i~~~---~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~ 84 (115)
...++|||+|||..+++++|+.+|..||.|..+. ++.+ ..++.++|||||+|.+.++|++|+..||+..+.|+.+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4567999999999999999999999999886631 1111 2378899999999999999999999999999999999
Q ss_pred eEEEeeecc
Q psy3928 85 SILTTTSRL 93 (115)
Q Consensus 85 ~v~~~~~~~ 93 (115)
.|..+++..
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 998887643
No 164
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=91.58 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=68.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....++|||+|+ ++++++|+++|.+||.|..+.+. .++|||||+|.+.++|++|+..|++..+.|+.+.|..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345689999996 89999999999999999999883 4567999999999999999999999999999988887
Q ss_pred eeeccc
Q psy3928 89 TTSRLS 94 (115)
Q Consensus 89 ~~~~~~ 94 (115)
+.++..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 776543
No 165
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=94.86 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=65.1
Q ss_pred cCCCCEEEE--cCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCC-----CC
Q psy3928 9 KKYGRVVLK--EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP-----TD 81 (115)
Q Consensus 9 ~~~~~~l~V--~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~-----~~ 81 (115)
....++||| +||+.++++++|+++|.+||.|..+.++. .+|||||+|.+.++|++|++.|||..+ .+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 445678999 88999999999999999999999988753 268999999999999999999999876 45
Q ss_pred ceeeEEEeee
Q psy3928 82 YQSSILTTTS 91 (115)
Q Consensus 82 ~~~~v~~~~~ 91 (115)
..+.+.++..
T Consensus 96 ~~l~v~~a~~ 105 (114)
T 2cq2_A 96 ITLYLNFVEK 105 (114)
T ss_dssp EECEEEEESC
T ss_pred cEEEEEeccc
Confidence 5666666653
No 166
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.69 E-value=6.9e-16 Score=96.11 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=69.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCce
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQ 83 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 83 (115)
....+|||+|||..+++++|+++|.+||.+..+.+..++.+|.++|+|||+|.+.++|.+|++.||+..+.|+.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 35678999999999999999999999999999999998888999999999999999999999999999999965
No 167
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=6.8e-16 Score=96.89 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCC---ceeeEE
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTD---YQSSIL 87 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~---~~~~v~ 87 (115)
..++|||+|||..+++++|+++|++||.+..+.++.++ +|.++|+|||+|.+.++|.+|++.||+..+.+ +.+.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56799999999999999999999999999999998886 68999999999999999999999999987764 666665
Q ss_pred Ee
Q psy3928 88 TT 89 (115)
Q Consensus 88 ~~ 89 (115)
.+
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 43
No 168
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=4.6e-16 Score=97.61 Aligned_cols=77 Identities=16% Similarity=0.032 Sum_probs=68.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCC--ceeeEEEe
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTD--YQSSILTT 89 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~--~~~~v~~~ 89 (115)
..+|||+||+..+++++|+++|++||.|..+.+... .++++|||+|.+.++|++|++.|||..+.+ +.++|..+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 457899999999999999999999999999988532 257899999999999999999999999966 88888887
Q ss_pred eec
Q psy3928 90 TSR 92 (115)
Q Consensus 90 ~~~ 92 (115)
+++
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 764
No 169
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.67 E-value=2.4e-16 Score=89.10 Aligned_cols=71 Identities=23% Similarity=0.238 Sum_probs=64.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhc----C-------CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCC
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKY----G-------KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPC 78 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~----g-------~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 78 (115)
...++|||+|||.++++++|+++|.+| | .+..+.+..+ +|||||+|.+.++|++|+ .+|+..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999999 8 8888887643 689999999999999999 999999
Q ss_pred CCCceeeEE
Q psy3928 79 PTDYQSSIL 87 (115)
Q Consensus 79 ~~~~~~~v~ 87 (115)
+.|+.++|.
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999988765
No 170
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=1.9e-16 Score=98.88 Aligned_cols=78 Identities=19% Similarity=0.269 Sum_probs=68.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
+.++|||+|||.++++++|+++|+.||.+..+.++.++.+|.++|||||+|.+.++|++|+.. +..++|+.+.+....
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 457999999999999999999999999999999999988999999999999999999999995 345667766665543
No 171
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=4.6e-16 Score=88.72 Aligned_cols=76 Identities=21% Similarity=0.343 Sum_probs=59.1
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCC--CCceee
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP--TDYQSS 85 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~--~~~~~~ 85 (115)
......+|||+|||.++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++ +++..+ .++.+.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456789999999999999999999999999999998753 68999999999999883 555543 366666
Q ss_pred EEEeeec
Q psy3928 86 ILTTTSR 92 (115)
Q Consensus 86 v~~~~~~ 92 (115)
+..+.++
T Consensus 78 v~~a~~k 84 (89)
T 3d2w_A 78 ISNAEPK 84 (89)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 6666554
No 172
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.66 E-value=7.3e-16 Score=93.46 Aligned_cols=76 Identities=17% Similarity=0.103 Sum_probs=66.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeE-EEEEecCHHHHHHHHHhhCCCCCCC--ceeeEEE
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGF-AFVEFSTKEEATKALELGLNPCPTD--YQSSILT 88 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~-~fv~f~~~~~a~~al~~l~~~~~~~--~~~~v~~ 88 (115)
.-.|||+||+..+++++|+++|++||.|..+.+.... +|+ |||+|.+.++|+.|++.|||..+.+ ..+++.+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 3578899999999999999999999999999876532 466 9999999999999999999999988 6677777
Q ss_pred eeec
Q psy3928 89 TTSR 92 (115)
Q Consensus 89 ~~~~ 92 (115)
+++.
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 7653
No 173
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.1e-16 Score=90.84 Aligned_cols=75 Identities=23% Similarity=0.305 Sum_probs=60.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCC--CCCceeeEE
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPC--PTDYQSSIL 87 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~--~~~~~~~v~ 87 (115)
...++|||+|||.++++++|+++|.+||.|..+.++.+ ++|||||+|.+.++|+++ ++.. +.+..+.+.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcCCceeCCEEEEEE
Confidence 35689999999999999999999999999999988653 678999999999999753 4433 356666666
Q ss_pred Eeeecc
Q psy3928 88 TTTSRL 93 (115)
Q Consensus 88 ~~~~~~ 93 (115)
.+.++.
T Consensus 74 ~a~~~~ 79 (88)
T 1wf0_A 74 NAEPKH 79 (88)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 655543
No 174
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=5.3e-16 Score=100.82 Aligned_cols=76 Identities=21% Similarity=0.198 Sum_probs=69.5
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 11 YGRVVLKEKLP-PEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 11 ~~~~l~V~~l~-~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
+.++|||+||| ..+++++|+++|.+||.|..++++.+ .+|+|||+|.+.++|++|++.|||..+.|+.++|..+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56899999999 89999999999999999999998754 3689999999999999999999999999999998876
Q ss_pred ee
Q psy3928 90 TS 91 (115)
Q Consensus 90 ~~ 91 (115)
+.
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 53
No 175
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.65 E-value=9.2e-16 Score=98.86 Aligned_cols=76 Identities=25% Similarity=0.271 Sum_probs=68.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
.++|||+|||..+++++|+++|.+||.|..+++++++ ++.++|||||+|.+.++|++|+..++. .+.|+.+.|...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~~Gr~l~V~~~ 184 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQ-KYKETDLLILFK 184 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTC-EETTEECEEEET
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCC-eECCEEEEEEEh
Confidence 4789999999999999999999999999999999886 688999999999999999999987664 788888877644
No 176
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1.7e-15 Score=91.29 Aligned_cols=73 Identities=21% Similarity=0.113 Sum_probs=64.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeE-EEEEecCHHHHHHHHHhhCCCCCCC--ceeeEEEee
Q psy3928 14 VVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGF-AFVEFSTKEEATKALELGLNPCPTD--YQSSILTTT 90 (115)
Q Consensus 14 ~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~-~fv~f~~~~~a~~al~~l~~~~~~~--~~~~v~~~~ 90 (115)
.|||+||+..+++++|+++|++||.|..+.+.. + .|+ |||+|.+.++|+.|++.|||..+.+ ..++|..++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 468999999999999999999999999998853 2 275 9999999999999999999999988 477887777
Q ss_pred ec
Q psy3928 91 SR 92 (115)
Q Consensus 91 ~~ 92 (115)
++
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 177
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.8e-15 Score=85.69 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=64.9
Q ss_pred CCE-EEEcCCCCCCCHHH----HHHHhhhcC-CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceee
Q psy3928 12 GRV-VLKEKLPPEAEHDY----IESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSS 85 (115)
Q Consensus 12 ~~~-l~V~~l~~~~~~~~----l~~~f~~~g-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~ 85 (115)
..+ |||+|||..+++++ |+++|.+|| .|..+ ++ |+|||.|.+.++|++|++.|+|..+.|+.++
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 445 99999999999987 668999995 99887 33 8999999999999999999999999999999
Q ss_pred EEEeeecccc
Q psy3928 86 ILTTTSRLSF 95 (115)
Q Consensus 86 v~~~~~~~~~ 95 (115)
+.+++.+...
T Consensus 78 v~~A~~~sd~ 87 (96)
T 2diu_A 78 VSFTPKNREL 87 (96)
T ss_dssp EESSCCSCCC
T ss_pred EEecCCCcce
Confidence 9988875543
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=3.2e-15 Score=100.67 Aligned_cols=82 Identities=21% Similarity=0.286 Sum_probs=73.7
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHH----HHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCce
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIE----SVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQ 83 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~----~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 83 (115)
+....++|||+|||.++++++|+ ++|..||.|..+.+.. +++++|||||+|.+.++|++|++.+|+..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34567899999999999999966 8999999999998864 7888999999999999999999999999999999
Q ss_pred eeEEEeeec
Q psy3928 84 SSILTTTSR 92 (115)
Q Consensus 84 ~~v~~~~~~ 92 (115)
+.|..++..
T Consensus 82 l~v~~a~~~ 90 (282)
T 3pgw_A 82 MRIQYAKTD 90 (282)
T ss_pred EEEEEeccC
Confidence 998877653
No 179
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.63 E-value=6.5e-15 Score=99.22 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=77.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
....+|||+|||..+++++|+++|..||.+..+.++.++.+|.++|+|||+|.+.++|.+|+..+++..+.|+.+.+..+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34679999999999999999999999999999999998889999999999999999999999999999999999998877
Q ss_pred eec
Q psy3928 90 TSR 92 (115)
Q Consensus 90 ~~~ 92 (115)
.+.
T Consensus 173 ~~~ 175 (284)
T 3smz_A 173 DAG 175 (284)
T ss_dssp CGG
T ss_pred CCC
Confidence 654
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.62 E-value=1.2e-15 Score=96.03 Aligned_cols=77 Identities=26% Similarity=0.358 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEee
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTT 90 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~ 90 (115)
..++|||+|||..+++++|+++|.+||.+..+ ..++.++|+|||+|.+.++|.+|+..|++..+.|+.+.+..+.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 45799999999999999999999999977665 3478899999999999999999999999999999998888776
Q ss_pred ec
Q psy3928 91 SR 92 (115)
Q Consensus 91 ~~ 92 (115)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 181
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.61 E-value=3.2e-15 Score=89.73 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=67.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|+ ++++++|+++|..||.|..+.+. .++|||||+|.+.++|++|+..|++..+.|+.+.|..+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45689999996 68999999999999999998874 45689999999999999999999999999999999888
Q ss_pred eecc
Q psy3928 90 TSRL 93 (115)
Q Consensus 90 ~~~~ 93 (115)
+++.
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7643
No 182
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=4.5e-15 Score=97.57 Aligned_cols=79 Identities=20% Similarity=0.153 Sum_probs=71.6
Q ss_pred ccCCCCEEEEcCCCC-CCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeE
Q psy3928 8 NKKYGRVVLKEKLPP-EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSI 86 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~-~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v 86 (115)
.....++|||+|||. ++++++|+++|..||.|..+.+..++ +|||||+|.+.++|++|++.+++..+.|+.+.+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999998754 679999999999999999999999999999998
Q ss_pred EEeee
Q psy3928 87 LTTTS 91 (115)
Q Consensus 87 ~~~~~ 91 (115)
..+..
T Consensus 105 ~~a~~ 109 (229)
T 2adc_A 105 TLSKH 109 (229)
T ss_dssp ECCSC
T ss_pred EEecC
Confidence 87664
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.61 E-value=2e-15 Score=102.09 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHhhhcCCeEEEEeceeCC-CCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 10 KYGRVVLKEKLPPE-AEHDYIESVFSKYGKVTYVSLPKFKS-TGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 10 ~~~~~l~V~~l~~~-~~~~~l~~~f~~~g~i~~~~i~~~~~-~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
...++|||+|||.. +++++|+++|..||.|..+.++.++. ++.++|+|||+|.+.++|.+|+ .||+..+.|+.+.|.
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~ 286 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVS 286 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEE
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEE
Confidence 45689999999999 99999999999999999999998774 4899999999999999999999 999999999999988
Q ss_pred Eeeec
Q psy3928 88 TTTSR 92 (115)
Q Consensus 88 ~~~~~ 92 (115)
.++++
T Consensus 287 ~a~~k 291 (292)
T 2ghp_A 287 LADKK 291 (292)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 87764
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.61 E-value=5.2e-15 Score=99.71 Aligned_cols=82 Identities=23% Similarity=0.269 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCC-CHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 10 KYGRVVLKEKLPPEA-EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~-~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
....+|||+|||..+ ++++|+++|..||.+..+.+..++ +|.++|+|||+|.+.++|.+|+..|++..+.|+.+.+..
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 456899999999995 999999999999999999998887 899999999999999999999999999999999999888
Q ss_pred eeec
Q psy3928 89 TTSR 92 (115)
Q Consensus 89 ~~~~ 92 (115)
+.++
T Consensus 261 a~~~ 264 (284)
T 3smz_A 261 CAPG 264 (284)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 7764
No 185
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=1e-14 Score=85.53 Aligned_cols=84 Identities=20% Similarity=0.052 Sum_probs=72.2
Q ss_pred cCCCCEEEEcCCCC-----CCCHHHHHHHhhhcCCeEEEEeceeCCC-CCeeeEEEEEecCHHHHHHHHHhhCCCCCCCc
Q psy3928 9 KKYGRVVLKEKLPP-----EAEHDYIESVFSKYGKVTYVSLPKFKST-GKLKGFAFVEFSTKEEATKALELGLNPCPTDY 82 (115)
Q Consensus 9 ~~~~~~l~V~~l~~-----~~~~~~l~~~f~~~g~i~~~~i~~~~~~-~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~ 82 (115)
....++|+|.|+.. +-.+++|++.|++||.|..+.++.++.+ +.++|++||+|.+.++|++|+..|||..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35678999999963 2367899999999999999999887643 67899999999999999999999999999999
Q ss_pred eeeEEEeeec
Q psy3928 83 QSSILTTTSR 92 (115)
Q Consensus 83 ~~~v~~~~~~ 92 (115)
.+.+..+.+.
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9998887653
No 186
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.58 E-value=5.1e-15 Score=94.98 Aligned_cols=76 Identities=21% Similarity=0.166 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 11 YGRVVLKEKLPP-EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 11 ~~~~l~V~~l~~-~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
..++|||+|||. .+++++|+++|..||.+..+.++.++ +|||||+|.+.++|+.|+..+++..+.|+.+.+..+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999987654 679999999999999999999999999999998877
Q ss_pred ee
Q psy3928 90 TS 91 (115)
Q Consensus 90 ~~ 91 (115)
..
T Consensus 77 ~~ 78 (198)
T 1qm9_A 77 KH 78 (198)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.57 E-value=1e-14 Score=96.65 Aligned_cols=79 Identities=18% Similarity=0.146 Sum_probs=68.4
Q ss_pred cCCCCEEEEcCCCCCC---------CHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCC
Q psy3928 9 KKYGRVVLKEKLPPEA---------EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP 79 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~---------~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 79 (115)
+...++|||+||+..+ ++++|+.+|.+||.|..+.++.+ +|||||+|.+.++|+.|++.|++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4456899999999998 69999999999999999998753 68999999999999999999999999
Q ss_pred ------------CCceeeEEEeeecc
Q psy3928 80 ------------TDYQSSILTTTSRL 93 (115)
Q Consensus 80 ------------~~~~~~v~~~~~~~ 93 (115)
.|+.+.|..++...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 78888888776543
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=2.6e-14 Score=96.21 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=68.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCC-CceeeEE
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPT-DYQSSIL 87 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~-~~~~~v~ 87 (115)
....++|||+|||..+++++|+++|..||.|..+.+..++ +|+|||+|.+.++|.+|+..||+..+. |+.++|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3456889999999999999999999999999999887543 579999999999999999999999999 8888887
Q ss_pred Eee
Q psy3928 88 TTT 90 (115)
Q Consensus 88 ~~~ 90 (115)
.++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 654
No 189
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=3.5e-14 Score=94.98 Aligned_cols=80 Identities=25% Similarity=0.318 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCC----CceeeE
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPT----DYQSSI 86 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~----~~~~~v 86 (115)
...+|||+|||..+++++|+++|..||.|..+.++.++ +|.++|+|||+|.+.++|.+|+..+++..+. ++.+.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 45789999999999999999999999999999999985 8999999999999999999999999654332 677777
Q ss_pred EEeee
Q psy3928 87 LTTTS 91 (115)
Q Consensus 87 ~~~~~ 91 (115)
..+.+
T Consensus 174 ~~~~~ 178 (261)
T 3sde_A 174 EPMEQ 178 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 76654
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.55 E-value=3.7e-14 Score=90.94 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcC-CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCC-CceeeEEE
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPT-DYQSSILT 88 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~-~~~~~v~~ 88 (115)
..++|||+|||..+++++|+++|..|| .+..+.+..+ .+|+|||+|.+.++|.+|+..|++..+. |+.+.+..
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 368899999999999999999999999 9999988653 2689999999999999999999999999 89999888
Q ss_pred eeec
Q psy3928 89 TTSR 92 (115)
Q Consensus 89 ~~~~ 92 (115)
++++
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 7754
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.54 E-value=1.2e-14 Score=94.46 Aligned_cols=71 Identities=15% Similarity=0.092 Sum_probs=63.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCe--EEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCce
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKV--TYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQ 83 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i--~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 83 (115)
..++|||+|||..+++++|+++|++||.+ ..+++..++ +.++|+|||+|.+.++|.+|+..||+..+.+..
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 35689999999999999999999999998 888887664 555699999999999999999999999888864
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.54 E-value=2.6e-14 Score=96.58 Aligned_cols=83 Identities=14% Similarity=0.207 Sum_probs=69.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcC-CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEE
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~ 88 (115)
...++|||+|||..+++++|+++|..|| .+..+.++.++ .+.++|||||+|.+.++|.+|+..|++..+.|+.+.+..
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 99999998887 478899999999999999999999999999999998887
Q ss_pred eeecc
Q psy3928 89 TTSRL 93 (115)
Q Consensus 89 ~~~~~ 93 (115)
+.+..
T Consensus 194 a~~~~ 198 (292)
T 2ghp_A 194 SNPLE 198 (292)
T ss_dssp CCCC-
T ss_pred CCCCc
Confidence 76543
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=1.1e-15 Score=96.22 Aligned_cols=82 Identities=16% Similarity=0.112 Sum_probs=69.2
Q ss_pred ccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEE
Q psy3928 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSIL 87 (115)
Q Consensus 8 ~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~ 87 (115)
.....++|||+|||.++++++|+++|..||.+..+ ++.+..++.++|||||+|.+.++|++|++ +++..+.|+.+.+.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 34567899999999999999999999999876552 33444478889999999999999999994 99999999998887
Q ss_pred Eeee
Q psy3928 88 TTTS 91 (115)
Q Consensus 88 ~~~~ 91 (115)
...+
T Consensus 87 ~~~~ 90 (175)
T 1fje_B 87 KPKG 90 (175)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7664
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.1e-14 Score=82.66 Aligned_cols=82 Identities=18% Similarity=0.175 Sum_probs=68.6
Q ss_pred CCCCEEEEcCCCCCCC-----------HHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCC
Q psy3928 10 KYGRVVLKEKLPPEAE-----------HDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPC 78 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~-----------~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~ 78 (115)
...++|+|.||..... +++|+++|.+||.|..+.| .++ .++|||||+|.+.++|++|+..||+..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3567899999954332 5789999999999999966 433 378999999999999999999999999
Q ss_pred CCCceeeEEEeeecccc
Q psy3928 79 PTDYQSSILTTTSRLSF 95 (115)
Q Consensus 79 ~~~~~~~v~~~~~~~~~ 95 (115)
++|+.+.+..+.++..+
T Consensus 89 ~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDY 105 (112)
T ss_dssp ETTEECEEEECCSCCCS
T ss_pred ECCcEEEEEEeCCCCCc
Confidence 99999999988776554
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=6.3e-14 Score=92.10 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcC-CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCC-CceeeEEE
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPT-DYQSSILT 88 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g-~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~-~~~~~v~~ 88 (115)
..++|||+|||..+++++|+++|..|| .+..+.+... .+|+|||+|.+.++|.+|+..|++..+. |+.+.+..
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 358899999999999999999999999 9999988542 2579999999999999999999999999 89999888
Q ss_pred eeec
Q psy3928 89 TTSR 92 (115)
Q Consensus 89 ~~~~ 92 (115)
++++
T Consensus 225 a~~~ 228 (229)
T 2adc_A 225 SKST 228 (229)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 7754
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=5.7e-14 Score=93.94 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=68.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
...++|||+|||.++++++|+++|..||.|..+.+..+ +|||||+|.+.++|+.|+..+++..+.|+.+.+..+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 34579999999999999999999999999999988532 589999999999999999999999999999888766
Q ss_pred ee
Q psy3928 90 TS 91 (115)
Q Consensus 90 ~~ 91 (115)
.+
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.50 E-value=1.3e-14 Score=84.98 Aligned_cols=71 Identities=20% Similarity=0.181 Sum_probs=60.3
Q ss_pred EcCCCCCCCHHHHHHHh------------hhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCcee
Q psy3928 17 KEKLPPEAEHDYIESVF------------SKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQS 84 (115)
Q Consensus 17 V~~l~~~~~~~~l~~~f------------~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~ 84 (115)
+.+||..+++.+|++.| ++||.|..+.++.++ ++.++|++||+|.+.++|++|+..|||..++|+.+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666666777666665 999999999998876 57899999999999999999999999999999988
Q ss_pred eEEE
Q psy3928 85 SILT 88 (115)
Q Consensus 85 ~v~~ 88 (115)
.+..
T Consensus 99 ~v~~ 102 (104)
T 1jmt_A 99 HAEL 102 (104)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 7754
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.48 E-value=8.5e-14 Score=87.17 Aligned_cols=73 Identities=22% Similarity=0.237 Sum_probs=63.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhc----C-------CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCC
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKY----G-------KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP 79 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~----g-------~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 79 (115)
+.++|||+|||.++++++|+++|++| | .+..+.+. .++|||||+|.+.++|++|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45799999999999999999999999 5 56666553 34789999999999999999 8999999
Q ss_pred CCceeeEEEee
Q psy3928 80 TDYQSSILTTT 90 (115)
Q Consensus 80 ~~~~~~v~~~~ 90 (115)
.|+.+.+....
T Consensus 76 ~g~~i~v~~~~ 86 (172)
T 2g4b_A 76 QGQSLKIRRPH 86 (172)
T ss_dssp TTEECEEECCS
T ss_pred cCceeeecCCc
Confidence 99988877654
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=3.3e-13 Score=79.08 Aligned_cols=82 Identities=20% Similarity=0.137 Sum_probs=68.5
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHHhhhcCCeEEEEeceeCCC--CCeeeEEEEEecCHHHHHHHHHhhCCCC
Q psy3928 11 YGRVVLKEKL--PPEAE--------HDYIESVFSKYGKVTYVSLPKFKST--GKLKGFAFVEFSTKEEATKALELGLNPC 78 (115)
Q Consensus 11 ~~~~l~V~~l--~~~~~--------~~~l~~~f~~~g~i~~~~i~~~~~~--~~~~g~~fv~f~~~~~a~~al~~l~~~~ 78 (115)
+.+.|.+.|+ |.... +++|++.|++||.|..+.|++++.+ +.++|++||+|.+.++|++|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4577888887 33333 2579999999999999999888744 3578999999999999999999999999
Q ss_pred CCCceeeEEEeeec
Q psy3928 79 PTDYQSSILTTTSR 92 (115)
Q Consensus 79 ~~~~~~~v~~~~~~ 92 (115)
+.|+.+.+......
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999998876543
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.45 E-value=1.3e-13 Score=88.02 Aligned_cols=74 Identities=22% Similarity=0.250 Sum_probs=63.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhc----C-------CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCC
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKY----G-------KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP 79 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~----g-------~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~ 79 (115)
..++|||+|||.++++++|+++|..| | .+..+.+ +.++|||||+|.+.++|++|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 4555544 345789999999999999999 8999999
Q ss_pred CCceeeEEEeee
Q psy3928 80 TDYQSSILTTTS 91 (115)
Q Consensus 80 ~~~~~~v~~~~~ 91 (115)
.|+.+.+.....
T Consensus 76 ~g~~i~v~~~~~ 87 (198)
T 2yh0_A 76 QGQSLKIRRPHD 87 (198)
T ss_dssp TTEEEEEECCCC
T ss_pred cCceEEEeCCCC
Confidence 999988876654
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.44 E-value=9e-13 Score=78.72 Aligned_cols=81 Identities=17% Similarity=0.130 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCC--CC---CHHHHHHHhhhcCCeEEEEeceeCC----CCCeeeEEEEEecCHHHHHHHHHhhCCCCCCC
Q psy3928 11 YGRVVLKEKLPP--EA---EHDYIESVFSKYGKVTYVSLPKFKS----TGKLKGFAFVEFSTKEEATKALELGLNPCPTD 81 (115)
Q Consensus 11 ~~~~l~V~~l~~--~~---~~~~l~~~f~~~g~i~~~~i~~~~~----~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~ 81 (115)
..++|++.|+-. .+ -+++|++.|++||.|..+.|+.++. ++.++|++||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 568899999842 22 3578999999999999999998864 35678999999999999999999999999999
Q ss_pred ceeeEEEeee
Q psy3928 82 YQSSILTTTS 91 (115)
Q Consensus 82 ~~~~v~~~~~ 91 (115)
+.+.+.....
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999887755
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.4e-12 Score=74.10 Aligned_cols=75 Identities=23% Similarity=0.178 Sum_probs=59.3
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCcee
Q psy3928 12 GRVVLKEKLP-------PEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQS 84 (115)
Q Consensus 12 ~~~l~V~~l~-------~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~ 84 (115)
..++-|.-.. ..+++++|+++|.+||.|..+.|+ +.++|||||+|.+.++|+.|++.+++ +.++.+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4455555433 458899999999999999999886 46789999999999999999998655 467777
Q ss_pred eEEEeeecc
Q psy3928 85 SILTTTSRL 93 (115)
Q Consensus 85 ~v~~~~~~~ 93 (115)
.|..++++.
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 777666543
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.40 E-value=8.6e-13 Score=91.50 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=58.6
Q ss_pred ccCCCCEEEEcC--CCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCC
Q psy3928 8 NKKYGRVVLKEK--LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPT 80 (115)
Q Consensus 8 ~~~~~~~l~V~~--l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~ 80 (115)
......+|||+| |+..+++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||..+.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 345668999998 578999999999999999999987743 3689999999999999999999999763
No 204
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.1e-10 Score=69.65 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=62.5
Q ss_pred cCCCCEEEEcCCCCC-CCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecC-HHHHHHHHHhhC--CCCCCCcee
Q psy3928 9 KKYGRVVLKEKLPPE-AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFST-KEEATKALELGL--NPCPTDYQS 84 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~-~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~-~~~a~~al~~l~--~~~~~~~~~ 84 (115)
-..+..|||+||+.. ++.++|+++|+.||.|..|.+..+.. .|||.|.+ ..+|..|+..++ +..+.+..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 456789999999999 99999999999999999999876542 49999999 899999999995 556777665
Q ss_pred eEEE
Q psy3928 85 SILT 88 (115)
Q Consensus 85 ~v~~ 88 (115)
.+..
T Consensus 89 ~~ev 92 (121)
T 1owx_A 89 TWEV 92 (121)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.17 E-value=4.8e-11 Score=70.79 Aligned_cols=76 Identities=12% Similarity=0.019 Sum_probs=61.6
Q ss_pred CCEEEEcCCCCCCC----------HHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCC
Q psy3928 12 GRVVLKEKLPPEAE----------HDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTD 81 (115)
Q Consensus 12 ~~~l~V~~l~~~~~----------~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~ 81 (115)
.+.|.+.|+-..-. +++|++.|++||.|..+.+..+. ++|++||+|.+.++|++|++.|||..++|
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45677777643221 24689999999999999886542 47999999999999999999999999999
Q ss_pred ceeeEEEeee
Q psy3928 82 YQSSILTTTS 91 (115)
Q Consensus 82 ~~~~v~~~~~ 91 (115)
+.+.+.....
T Consensus 83 R~i~v~~~~~ 92 (114)
T 3s6e_A 83 KMITAAYVPL 92 (114)
T ss_dssp EECEEEEECH
T ss_pred EEEEEEEEcH
Confidence 9999988754
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=1.1e-09 Score=62.02 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=60.4
Q ss_pred CCCCEEEEcCCCC----C-CCH---HHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCC
Q psy3928 10 KYGRVVLKEKLPP----E-AEH---DYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTD 81 (115)
Q Consensus 10 ~~~~~l~V~~l~~----~-~~~---~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~ 81 (115)
+...+|+|.-.+. . ..+ .+|...|.+||.+..+++..++ +||+|.+.+.|.+|+. |||..+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 4567788877652 2 332 5689999999999999998764 8999999999999998 99999999
Q ss_pred ceeeEEEeee
Q psy3928 82 YQSSILTTTS 91 (115)
Q Consensus 82 ~~~~v~~~~~ 91 (115)
+.++|..+++
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999888775
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.95 E-value=5.4e-09 Score=68.13 Aligned_cols=67 Identities=19% Similarity=0.128 Sum_probs=58.7
Q ss_pred CHHHHHHHhhhcCCeEEEEeceeCC----CCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeee
Q psy3928 25 EHDYIESVFSKYGKVTYVSLPKFKS----TGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTS 91 (115)
Q Consensus 25 ~~~~l~~~f~~~g~i~~~~i~~~~~----~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~ 91 (115)
.+++|.+.|.+||.+..+.+..+.. ++.++|++||+|.+.++|++|++.|||..+.|+.+.+.....
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4467999999999999999986643 448899999999999999999999999999999999887653
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=4e-09 Score=59.99 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=62.8
Q ss_pred hhcccCCCCEEEEcCCCCC------CCH---HHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhC
Q psy3928 5 VENNKKYGRVVLKEKLPPE------AEH---DYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGL 75 (115)
Q Consensus 5 ~~~~~~~~~~l~V~~l~~~------~~~---~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 75 (115)
.....+...+|+|.-++.. ..+ .+|.+.|.+||.+..+++..++ +||+|.+.+.|.+|+. |+
T Consensus 8 i~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ld 78 (95)
T 1ufw_A 8 SSFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VD 78 (95)
T ss_dssp SCCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GG
T ss_pred ceecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cC
Confidence 3445667789999887743 332 4589999999999999987763 9999999999999998 99
Q ss_pred CCCCCCceeeEEEee
Q psy3928 76 NPCPTDYQSSILTTT 90 (115)
Q Consensus 76 ~~~~~~~~~~v~~~~ 90 (115)
|..+.|+.++|....
T Consensus 79 G~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 79 GMKVKGRAVKISGPS 93 (95)
T ss_dssp GSEETTEEEEEECCC
T ss_pred CeeeCCeEEEEeccC
Confidence 999999998887654
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.60 E-value=2.2e-07 Score=54.09 Aligned_cols=76 Identities=13% Similarity=-0.024 Sum_probs=66.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHHHhhhc-----CCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCce
Q psy3928 9 KKYGRVVLKEKLPPEAEHDYIESVFSKY-----GKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQ 83 (115)
Q Consensus 9 ~~~~~~l~V~~l~~~~~~~~l~~~f~~~-----g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~ 83 (115)
+...++|-+-+||..++...|+.++.++ |.+..+.+..+. +.|+|+|.+...|.+|.-.|+|..+.|+.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3447888888999999999999999999 889888876654 57999999999999999999999999998
Q ss_pred eeEEEee
Q psy3928 84 SSILTTT 90 (115)
Q Consensus 84 ~~v~~~~ 90 (115)
+++..+.
T Consensus 92 Lr~gTv~ 98 (117)
T 2l9w_A 92 IRSGTIN 98 (117)
T ss_dssp EEEECHH
T ss_pred EEecCHH
Confidence 8876553
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.88 E-value=6e-05 Score=42.95 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=46.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhC
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGL 75 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 75 (115)
.+.+++ ++|+.+...+|.++|++||. ..++++.+- -|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 466777 99999999999999999983 346666553 79999999999999999774
No 211
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.71 E-value=7.2e-05 Score=42.71 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=46.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhC
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGL 75 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~ 75 (115)
+.+++ ++|+.+...+|.++|++|| .-.++++.+- -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 56667 9999999999999999998 5556676653 79999999999999999875
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.68 E-value=0.00039 Score=39.23 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=56.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCC--eeeEEEEEecCHHHHHHHHHhhCCCCCCCcee
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGK--LKGFAFVEFSTKEEATKALELGLNPCPTDYQS 84 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~--~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~ 84 (115)
.+|.|++||++++++++.+.+..............+.+.+ ...-|++.|.+.+++....+.++|..+.+...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg 75 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKG 75 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCC
Confidence 4789999999999999999999887665555544433222 34579999999999999999999997665543
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=0.0036 Score=35.97 Aligned_cols=71 Identities=18% Similarity=0.123 Sum_probs=53.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhh----c-CCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCcee
Q psy3928 10 KYGRVVLKEKLPPEAEHDYIESVFSK----Y-GKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQS 84 (115)
Q Consensus 10 ~~~~~l~V~~l~~~~~~~~l~~~f~~----~-g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~ 84 (115)
....+|.|.|||..+.++.|.-+|++ . |.+..+.... +-|+|+|.+...|++.|+.-. ..+.+..+
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~-H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQAD-HELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSC-CBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCc-ceecCeEE
Confidence 45679999999999999999999987 2 3566654421 468999999999999998623 35566666
Q ss_pred eEEEe
Q psy3928 85 SILTT 89 (115)
Q Consensus 85 ~v~~~ 89 (115)
.|...
T Consensus 77 sV~P~ 81 (104)
T 2dhx_A 77 SLRPA 81 (104)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 66543
No 214
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.45 E-value=0.00027 Score=40.72 Aligned_cols=75 Identities=15% Similarity=-0.007 Sum_probs=59.7
Q ss_pred CCCEEEEcCCCCCC-CH----HHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceee
Q psy3928 11 YGRVVLKEKLPPEA-EH----DYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSS 85 (115)
Q Consensus 11 ~~~~l~V~~l~~~~-~~----~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~ 85 (115)
-+.+|+|.||+..+ .. ..++.+|..|+.......... -.-..|.|.+.++|.+|-..|++..+.|..++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 46789999998755 21 467999999997766554432 12468999999999999999999999999999
Q ss_pred EEEeee
Q psy3928 86 ILTTTS 91 (115)
Q Consensus 86 v~~~~~ 91 (115)
+....+
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 988764
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.23 E-value=0.0017 Score=38.35 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=52.1
Q ss_pred cccCCCCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCC
Q psy3928 7 NNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTD 81 (115)
Q Consensus 7 ~~~~~~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~ 81 (115)
......+-|.|.+.|... ...+...|.+||.|.+.... .+ ..+-.|.|.++.+|++||.. ||..+.+
T Consensus 19 ~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~--~NWihI~Y~s~~~A~rAL~k-NG~ii~g 85 (119)
T 1wwh_A 19 EDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NT--GNWMHIRYQSKLQARKALSK-DGRIFGE 85 (119)
T ss_dssp --CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SS--SSEEEEEESSHHHHHHHHTT-TTCEETT
T ss_pred CCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CC--CCeEEEEeCCHHHHHHHHHh-CCeEecC
Confidence 344456778899999984 57789999999999887651 22 24899999999999999994 8887765
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.96 E-value=0.0013 Score=37.49 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=51.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCC--eeeEEEEEecCHHHHHHHHHhhCCCCCCCcee
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGK--LKGFAFVEFSTKEEATKALELGLNPCPTDYQS 84 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~--~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~ 84 (115)
.-+|.|+.||+.++|+++.+.+...-..........+.+.+ .-.-|+|.|.+.++.....+.++|..+.+.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg 83 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKG 83 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCC
Confidence 45789999999999999888777654433222222221211 23579999999999999999999987655443
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.90 E-value=0.0006 Score=49.07 Aligned_cols=56 Identities=23% Similarity=0.272 Sum_probs=41.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHh
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~ 73 (115)
.++|+|. .|...++.+|.++|++||.|..+.+..+ .| .|+.|||.+.++++.++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SS---EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CC---eEEEEEeCCHHHHHHHHhc
Confidence 4789997 6999999999999999999998866543 23 5999999999998876654
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.39 E-value=0.0036 Score=38.11 Aligned_cols=33 Identities=24% Similarity=0.073 Sum_probs=27.2
Q ss_pred EEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCC
Q psy3928 42 VSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76 (115)
Q Consensus 42 ~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~ 76 (115)
+++.++ ....+||+||+|.+.++|++|++.+++
T Consensus 3 ~kl~ln--~~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 3 YKLILN--GKTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEE--CSSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEec--CccccchhHHHHHHHHhHHHHHHhhcc
Confidence 455665 346899999999999999999988775
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.91 E-value=0.05 Score=32.58 Aligned_cols=74 Identities=9% Similarity=0.117 Sum_probs=50.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEE-EEeceeC------------CCC-CeeeEEEEEecCHHHHHHHHHhhCCCC
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTY-VSLPKFK------------STG-KLKGFAFVEFSTKEEATKALELGLNPC 78 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~-~~i~~~~------------~~~-~~~g~~fv~f~~~~~a~~al~~l~~~~ 78 (115)
.-|.|-+.|... ...+.+.|++||.|.+ ....... ... ....+-.|.|.+..+|++||. .||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 456777998864 4668889999998865 2221100 001 123588999999999999998 68888
Q ss_pred CCCceeeEEE
Q psy3928 79 PTDYQSSILT 88 (115)
Q Consensus 79 ~~~~~~~v~~ 88 (115)
+.|.-+-+..
T Consensus 86 i~G~mIGV~P 95 (132)
T 3p3d_A 86 FNGVLLGVIP 95 (132)
T ss_dssp ETTEECEEEE
T ss_pred eCcEEEEEEE
Confidence 8886444443
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.09 E-value=0.29 Score=35.68 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=45.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhhcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCC
Q psy3928 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNP 77 (115)
Q Consensus 12 ~~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~ 77 (115)
...++|+ +|..+...+|.+.|+.||.+ .++++.+. .|||.|.+.+.|..+++.+...
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHhC
Confidence 4566675 88899999999999999943 45554332 6999999999999999998643
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.08 E-value=0.015 Score=35.11 Aligned_cols=41 Identities=17% Similarity=0.020 Sum_probs=34.7
Q ss_pred CCCeeeEEEEEecCHHHHHHHHHhh-CCCCCCCceeeEEEeee
Q psy3928 50 TGKLKGFAFVEFSTKEEATKALELG-LNPCPTDYQSSILTTTS 91 (115)
Q Consensus 50 ~~~~~g~~fv~f~~~~~a~~al~~l-~~~~~~~~~~~v~~~~~ 91 (115)
...-+|+++++|.+.+.|++|++.+ |+..++| .+.+..+..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4456899999999999999999999 9999999 777765543
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=38.71 E-value=41 Score=17.19 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=35.1
Q ss_pred CCCHHHHHHHhhhcC-----CeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEe
Q psy3928 23 EAEHDYIESVFSKYG-----KVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTT 89 (115)
Q Consensus 23 ~~~~~~l~~~f~~~g-----~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~ 89 (115)
.+...+|..++..-+ .+-.+.+.. .++||+... ..+..++..+++..+.|+.+.+..+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 455566777776543 344555532 278888876 4577889999998889988776544
No 223
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=33.18 E-value=10 Score=26.95 Aligned_cols=11 Identities=36% Similarity=1.344 Sum_probs=8.9
Q ss_pred CcceEEeeecC
Q psy3928 104 SGGWWFKSSHE 114 (115)
Q Consensus 104 ~~g~~~~~~~~ 114 (115)
.||||+.++|.
T Consensus 331 ~GGWWy~~C~~ 341 (411)
T 3ghg_C 331 GSGWWMNKCHA 341 (411)
T ss_dssp TSEECCSSBCS
T ss_pred CCCcccCCCCC
Confidence 57999988774
No 224
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=30.49 E-value=12 Score=27.04 Aligned_cols=11 Identities=45% Similarity=1.627 Sum_probs=9.0
Q ss_pred CcceEEeeecC
Q psy3928 104 SGGWWFKSSHE 114 (115)
Q Consensus 104 ~~g~~~~~~~~ 114 (115)
.||||+...|.
T Consensus 399 ~GGWWy~~C~~ 409 (461)
T 3ghg_B 399 GGGWWYNRCHA 409 (461)
T ss_dssp CSCBCCSSBCS
T ss_pred CCCCCCCCCCC
Confidence 58999998774
No 225
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=28.57 E-value=13 Score=25.49 Aligned_cols=12 Identities=42% Similarity=1.567 Sum_probs=9.3
Q ss_pred CCcceEEeeecC
Q psy3928 103 ESGGWWFKSSHE 114 (115)
Q Consensus 103 ~~~g~~~~~~~~ 114 (115)
..||||+.++|.
T Consensus 265 ~~ggWWy~~C~~ 276 (328)
T 1fzc_B 265 DGGGWWYNRCHA 276 (328)
T ss_dssp TCSCBCCSSBCS
T ss_pred CCCCEeCCCCCC
Confidence 368999988763
No 226
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.42 E-value=13 Score=25.55 Aligned_cols=11 Identities=36% Similarity=1.335 Sum_probs=8.7
Q ss_pred CcceEEeeecC
Q psy3928 104 SGGWWFKSSHE 114 (115)
Q Consensus 104 ~~g~~~~~~~~ 114 (115)
.||||+.++|.
T Consensus 251 ~GGWWy~~C~~ 261 (323)
T 1lwu_C 251 GSGWWMNRCHA 261 (323)
T ss_dssp TSCBCCSSSCS
T ss_pred CCCCccCCCCC
Confidence 57999988763
No 227
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=28.30 E-value=14 Score=25.38 Aligned_cols=11 Identities=36% Similarity=1.344 Sum_probs=8.7
Q ss_pred CcceEEeeecC
Q psy3928 104 SGGWWFKSSHE 114 (115)
Q Consensus 104 ~~g~~~~~~~~ 114 (115)
.||||+.++|.
T Consensus 244 ~GGWWy~~C~~ 254 (319)
T 1fzc_C 244 GSGWWMNKCHA 254 (319)
T ss_dssp TSCBCCSSBCS
T ss_pred CCCCcCCCCCC
Confidence 57999988763
No 228
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.00 E-value=13 Score=26.88 Aligned_cols=11 Identities=45% Similarity=1.627 Sum_probs=8.8
Q ss_pred CcceEEeeecC
Q psy3928 104 SGGWWFKSSHE 114 (115)
Q Consensus 104 ~~g~~~~~~~~ 114 (115)
.||||+.++|.
T Consensus 403 ~GGWWy~~C~~ 413 (464)
T 1m1j_B 403 GGGWWYNRCHA 413 (464)
T ss_dssp TSCBCCSSBCS
T ss_pred CCCEeCCCCCC
Confidence 68999988763
No 229
>2wnp_F Ficolin-1; glycoprotein, innate immunity, fibrinogen-like domain, carbohydrate recognition, lectin, immune system; 1.21A {Homo sapiens} PDB: 2jhm_F 2jhl_F* 2jhh_C 2jhk_F* 2jhi_F* 2j3o_A* 2j3f_A* 2j1g_A* 2j0h_A* 2j0g_A* 2j0y_A* 2j2p_A* 2j3g_A* 2j3u_A* 2j61_B* 2j3f_D* 2j61_A*
Probab=27.64 E-value=14 Score=23.92 Aligned_cols=11 Identities=36% Similarity=1.422 Sum_probs=8.7
Q ss_pred CcceEEeeecC
Q psy3928 104 SGGWWFKSSHE 114 (115)
Q Consensus 104 ~~g~~~~~~~~ 114 (115)
.||||+.+.|.
T Consensus 166 ~GgWWy~~C~~ 176 (217)
T 2wnp_F 166 QGAWWYADCHA 176 (217)
T ss_dssp TSCBCCSSSCS
T ss_pred CCCCccCCCCC
Confidence 58999987763
No 230
>1fzd_A Fibrinogen-420; blood coagulation, alphaec domain, fibrinoge domain, glycosylated protein; HET: NAG MAN NDG; 2.10A {Homo sapiens} SCOP: d.171.1.1
Probab=27.10 E-value=14 Score=23.53 Aligned_cols=11 Identities=36% Similarity=1.516 Sum_probs=8.6
Q ss_pred CcceEEeeecC
Q psy3928 104 SGGWWFKSSHE 114 (115)
Q Consensus 104 ~~g~~~~~~~~ 114 (115)
.||||+.++|.
T Consensus 139 ~GGWWy~~C~~ 149 (201)
T 1fzd_A 139 GGGWWYNNCQA 149 (201)
T ss_dssp CSCBCCSSSCS
T ss_pred CCCCcCCCCCC
Confidence 57999988763
No 231
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.90 E-value=14 Score=26.21 Aligned_cols=11 Identities=36% Similarity=1.335 Sum_probs=8.6
Q ss_pred CcceEEeeecC
Q psy3928 104 SGGWWFKSSHE 114 (115)
Q Consensus 104 ~~g~~~~~~~~ 114 (115)
.||||+.+.|.
T Consensus 331 ~GGWWy~~C~~ 341 (409)
T 1m1j_C 331 GSGWWMNRCHA 341 (409)
T ss_dssp TSCBCCSSSCS
T ss_pred CCCCcCCCCCC
Confidence 57999988763
No 232
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=26.83 E-value=14 Score=25.30 Aligned_cols=12 Identities=42% Similarity=1.586 Sum_probs=9.2
Q ss_pred CCcceEEeeecC
Q psy3928 103 ESGGWWFKSSHE 114 (115)
Q Consensus 103 ~~~g~~~~~~~~ 114 (115)
..||||+.++|.
T Consensus 262 ~~ggWWy~~C~~ 273 (323)
T 1lwu_B 262 DAGGWWYNRCHA 273 (323)
T ss_dssp TTSCBCCSSSCS
T ss_pred CCCCEeCCCCCC
Confidence 368999987763
No 233
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=26.69 E-value=43 Score=18.91 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.1
Q ss_pred CeeeEEEEEecCHHHHHHHHHhhCCC
Q psy3928 52 KLKGFAFVEFSTKEEATKALELGLNP 77 (115)
Q Consensus 52 ~~~g~~fv~f~~~~~a~~al~~l~~~ 77 (115)
.-+||-|||=.+..++..|++.+.+.
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CCceEEEEEeCCHHHHHHHHhcccce
Confidence 35789999999999999999877654
No 234
>2d39_A Ficolin-1; innate immunity system, lectin pathway, immune system; 1.90A {Homo sapiens}
Probab=26.51 E-value=15 Score=24.07 Aligned_cols=11 Identities=36% Similarity=1.422 Sum_probs=8.7
Q ss_pred CcceEEeeecC
Q psy3928 104 SGGWWFKSSHE 114 (115)
Q Consensus 104 ~~g~~~~~~~~ 114 (115)
.||||+.++|.
T Consensus 163 ~GgWWy~~C~~ 173 (237)
T 2d39_A 163 QGAWWYADCHA 173 (237)
T ss_dssp TSCBCCSSCCS
T ss_pred CCCccCCCCCC
Confidence 58999988764
No 235
>2j5z_A Ficolin-3; hydroxylation, alternative splicing, lectin, collagen, immunology, glycoprotein; HET: GAL; 1.73A {Homo sapiens} PDB: 2j60_A* 2j64_A
Probab=26.47 E-value=14 Score=23.96 Aligned_cols=11 Identities=36% Similarity=1.226 Sum_probs=8.7
Q ss_pred CcceEEeeecC
Q psy3928 104 SGGWWFKSSHE 114 (115)
Q Consensus 104 ~~g~~~~~~~~ 114 (115)
.||||+.+.|.
T Consensus 172 ~GgWWy~~C~~ 182 (221)
T 2j5z_A 172 HGAWWYASCYR 182 (221)
T ss_dssp TSCBSCSSSCS
T ss_pred CccEeCCCCCC
Confidence 58999988764
No 236
>1z3u_A Angiopoietin-2, ANG-2; TIE2 binding, angiogenesis, extracellular ligand, signaling protein; 2.25A {Homo sapiens} PDB: 1z3s_A 2gy7_A*
Probab=25.85 E-value=15 Score=23.66 Aligned_cols=11 Identities=45% Similarity=1.510 Sum_probs=8.6
Q ss_pred CcceEEeeecC
Q psy3928 104 SGGWWFKSSHE 114 (115)
Q Consensus 104 ~~g~~~~~~~~ 114 (115)
.||||+.+.|.
T Consensus 163 ~GgWWy~~C~~ 173 (217)
T 1z3u_A 163 TGGWWFDACGP 173 (217)
T ss_dssp CSCBCCSSSCS
T ss_pred cCeEeCCCCCc
Confidence 58999987763
No 237
>1jc9_A Techylectin-5A; fibrinogen related, sugar binding protein; HET: NAG; 2.01A {Tachypleus tridentatus} SCOP: d.171.1.1
Probab=25.15 E-value=16 Score=24.39 Aligned_cols=11 Identities=55% Similarity=1.718 Sum_probs=8.7
Q ss_pred CcceEEeeecC
Q psy3928 104 SGGWWFKSSHE 114 (115)
Q Consensus 104 ~~g~~~~~~~~ 114 (115)
.||||+.+.|.
T Consensus 211 ~GgWWy~~C~~ 221 (269)
T 1jc9_A 211 KGGWWYDRCHE 221 (269)
T ss_dssp CSCBCCSSSCS
T ss_pred cCCEeCCCCCC
Confidence 57999988763
No 238
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=23.42 E-value=72 Score=17.25 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=19.0
Q ss_pred eeeEEEEEecCHHHHHHHHHhhCC
Q psy3928 53 LKGFAFVEFSTKEEATKALELGLN 76 (115)
Q Consensus 53 ~~g~~fv~f~~~~~a~~al~~l~~ 76 (115)
-.||-||+....++.-.+++...+
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTT
T ss_pred cCCEEEEEEecchhHHHHHHCCCC
Confidence 578999999998887777765554
No 239
>2fib_A Fibrinogen; fibrinogen, blood coagulation, fibrin polymerization, complex (blood coagulation/peptide); 2.01A {Homo sapiens} SCOP: d.171.1.1 PDB: 1fic_A 1fid_A 1fib_A 3fib_A
Probab=23.26 E-value=18 Score=24.12 Aligned_cols=11 Identities=36% Similarity=1.344 Sum_probs=8.6
Q ss_pred CcceEEeeecC
Q psy3928 104 SGGWWFKSSHE 114 (115)
Q Consensus 104 ~~g~~~~~~~~ 114 (115)
.||||+.++|.
T Consensus 189 ~GGWWy~~C~~ 199 (269)
T 2fib_A 189 GSGWWMNKCHA 199 (269)
T ss_dssp TSCBCCSSSCS
T ss_pred CCCCcCCCCCC
Confidence 57999988763
No 240
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=22.77 E-value=1.4e+02 Score=18.44 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=37.2
Q ss_pred CCEEEEcCCCC---------CCCHHHHHHHh--hhcCCeEEEEeceeCCCCCeeeEEEEEec-CHHHHHHHHH
Q psy3928 12 GRVVLKEKLPP---------EAEHDYIESVF--SKYGKVTYVSLPKFKSTGKLKGFAFVEFS-TKEEATKALE 72 (115)
Q Consensus 12 ~~~l~V~~l~~---------~~~~~~l~~~f--~~~g~i~~~~i~~~~~~~~~~g~~fv~f~-~~~~a~~al~ 72 (115)
+-.+.|-|+|. ..+...|++.| ..|.++. +.-+.++ ...+|++.|.|. +-.....|+.
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 34555667776 24456789877 8887665 4334443 347889999997 4455555554
No 241
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=22.63 E-value=96 Score=20.37 Aligned_cols=29 Identities=14% Similarity=0.309 Sum_probs=23.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhhcCCeEEE
Q psy3928 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYV 42 (115)
Q Consensus 13 ~~l~V~~l~~~~~~~~l~~~f~~~g~i~~~ 42 (115)
..+.|+|+|..++...|.+++.. ..+...
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 46789999999999999998877 545443
No 242
>2jr3_A Pelovaterin; beta-defensin like peptide, chinese SOFT-shelled turtle eggshell, antibacterial peptide, eggshell matrix; NMR {Pelodiscus sinensis}
Probab=21.96 E-value=42 Score=14.97 Aligned_cols=10 Identities=40% Similarity=0.846 Sum_probs=6.6
Q ss_pred CCCCCCCcce
Q psy3928 98 TPLGFESGGW 107 (115)
Q Consensus 98 ~~~~~~~~g~ 107 (115)
|.++-++|||
T Consensus 4 pssrcgsggw 13 (42)
T 2jr3_A 4 PSSRCGSGGW 13 (42)
T ss_dssp CSCCTTTSSB
T ss_pred ccccccCCCc
Confidence 4455677886
No 243
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=21.51 E-value=1.1e+02 Score=17.11 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=22.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhhcCCe
Q psy3928 11 YGRVVLKEKLPPEAEHDYIESVFSKYGKV 39 (115)
Q Consensus 11 ~~~~l~V~~l~~~~~~~~l~~~f~~~g~i 39 (115)
.+.++|+.+.-+......|.+++..||+.
T Consensus 9 ~g~~f~l~~~~p~~~r~~l~ryiia~GG~ 37 (104)
T 3pc6_A 9 EGKHFFLYGEFPGDERRRLIRYVTAFNGE 37 (104)
T ss_dssp TTCEEEEESCCSTTHHHHHHHHHHHTTCE
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHHHcCCE
Confidence 36789998776544567789999999865
No 244
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.14 E-value=1.2e+02 Score=17.04 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHhh-hcCCeEEEEeceeCCCCCeeeEEEEEecCHHHHHHHHHhhCCCCCCCceeeEEEeeec
Q psy3928 19 KLPPEAEHDYIESVFS-KYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILTTTSR 92 (115)
Q Consensus 19 ~l~~~~~~~~l~~~f~-~~g~i~~~~i~~~~~~~~~~g~~fv~f~~~~~a~~al~~l~~~~~~~~~~~v~~~~~~ 92 (115)
.++.-+.-++|..-.. .||+...+....+ -..|-..+.++..+|++.++... .-+.++++...+.
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss-~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSI-HMKSLKILLVING 88 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCS-SCCSEEEEEEECC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCC-cccceEEEEecCC
Confidence 4577788888876665 4898777766522 25677888999999999887653 3344566655544
No 245
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=20.87 E-value=21 Score=17.79 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=15.1
Q ss_pred EEcCCCCCCCHHHHHHHhhhc
Q psy3928 16 LKEKLPPEAEHDYIESVFSKY 36 (115)
Q Consensus 16 ~V~~l~~~~~~~~l~~~f~~~ 36 (115)
|+.|.|..+....+++.+..|
T Consensus 42 flenvprgtktahirealrry 62 (70)
T 2q2k_A 42 FLENVPRGTKTAHIREALRRY 62 (70)
T ss_dssp HHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHcCCCccchHHHHHHHHHH
Confidence 467888888777777666654
Done!