Your job contains 1 sequence.
>psy3928
MAELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVE
FSTKEEATKALELGLNPCPTDYQSSILTTTSRLSFGITPLGFESGGWWFKSSHEI
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3928
(115 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NJ86 - symbol:LARP7 "Uncharacterized protein"... 189 6.9e-15 1
UNIPROTKB|D6RFF0 - symbol:LARP7 "La-related protein 7" sp... 186 2.0e-14 1
UNIPROTKB|E1BQG3 - symbol:LARP7 "Uncharacterized protein"... 189 7.2e-14 1
UNIPROTKB|F1MR14 - symbol:F1MR14 "Uncharacterized protein... 186 1.4e-13 1
UNIPROTKB|I3LNK9 - symbol:I3LNK9 "Uncharacterized protein... 186 1.4e-13 1
UNIPROTKB|E2QW27 - symbol:LARP7 "Uncharacterized protein"... 186 1.4e-13 1
UNIPROTKB|Q4G0J3 - symbol:LARP7 "La-related protein 7" sp... 186 1.4e-13 1
UNIPROTKB|F1S150 - symbol:LARP7 "Uncharacterized protein"... 186 1.4e-13 1
MGI|MGI:107634 - symbol:Larp7 "La ribonucleoprotein domai... 185 1.8e-13 1
RGD|1592474 - symbol:Larp7 "La ribonucleoprotein domain f... 185 1.8e-13 1
UNIPROTKB|Q5XI01 - symbol:Larp7 "La-related protein 7" sp... 185 1.8e-13 1
ZFIN|ZDB-GENE-030131-6896 - symbol:larp7 "La ribonucleopr... 177 1.2e-12 1
FB|FBgn0260771 - symbol:Larp7 "La related protein 7" spec... 144 4.9e-09 1
WB|WBGene00004387 - symbol:rnp-4 species:6239 "Caenorhabd... 114 6.1e-07 1
GENEDB_PFALCIPARUM|MAL8P1.83 - symbol:MAL8P1.83 "eukaryot... 99 1.4e-06 2
UNIPROTKB|Q8IAZ3 - symbol:MAL8P1.83 "Eukaryotic translati... 99 1.4e-06 2
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 122 1.6e-06 1
DICTYBASE|DDB_G0284663 - symbol:mrd1 "RNA-binding region ... 122 1.9e-06 1
POMBASE|SPAC23A1.09 - symbol:SPAC23A1.09 "RNA-binding pro... 109 2.1e-06 1
POMBASE|SPAC25G10.01 - symbol:SPAC25G10.01 "RNA-binding p... 113 3.4e-06 1
TAIR|locus:2055951 - symbol:AT2G22100 species:3702 "Arabi... 101 4.7e-06 2
MGI|MGI:2655711 - symbol:Rbm28 "RNA binding motif protein... 117 5.2e-06 1
UNIPROTKB|E1BLD4 - symbol:RBM28 "Uncharacterized protein"... 117 5.3e-06 1
GENEDB_PFALCIPARUM|PF14_0057 - symbol:PF14_0057 "RNA bind... 105 5.5e-06 1
UNIPROTKB|Q8IM34 - symbol:PF14_0057 "RNA binding protein,... 105 5.5e-06 1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi... 105 5.5e-06 1
DICTYBASE|DDB_G0275459 - symbol:DDB_G0275459 "RNA-binding... 111 5.7e-06 1
ZFIN|ZDB-GENE-040426-960 - symbol:rbm28 "RNA binding moti... 108 5.7e-06 2
UNIPROTKB|A4RHN3 - symbol:TIF35 "Eukaryotic translation i... 111 5.8e-06 1
TAIR|locus:2173338 - symbol:SC35 "ortholog of human splic... 111 5.8e-06 1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 89 5.9e-06 2
UNIPROTKB|D4A5K7 - symbol:Rbm28 "RNA binding motif protei... 116 6.1e-06 1
RGD|1311336 - symbol:Rbm28 "RNA binding motif protein 28"... 116 6.7e-06 1
ASPGD|ASPL0000076347 - symbol:AN4505 species:162425 "Emer... 104 7.0e-06 1
WB|WBGene00001230 - symbol:eif-3.G species:6239 "Caenorha... 107 1.1e-05 1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ... 102 1.1e-05 1
UNIPROTKB|F1RXX7 - symbol:MKI67 "Uncharacterized protein"... 108 1.2e-05 1
UNIPROTKB|E2RIB8 - symbol:RBM28 "Uncharacterized protein"... 113 1.4e-05 1
UNIPROTKB|J9NXM6 - symbol:MKI67IP "Uncharacterized protei... 107 1.5e-05 1
UNIPROTKB|E2RHG8 - symbol:MKI67IP "Uncharacterized protei... 107 1.6e-05 1
DICTYBASE|DDB_G0270634 - symbol:DDB_G0270634 "putative sp... 108 1.8e-05 1
UNIPROTKB|Q3SZM1 - symbol:MKI67IP "MKI67 FHA domain-inter... 106 2.0e-05 1
SGD|S000006316 - symbol:MRD1 "Essential conserved small r... 112 2.2e-05 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 111 2.2e-05 1
WB|WBGene00011043 - symbol:rbm-28 species:6239 "Caenorhab... 110 2.2e-05 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 107 2.3e-05 1
UNIPROTKB|Q9NW13 - symbol:RBM28 "RNA-binding protein 28" ... 111 2.3e-05 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 110 2.3e-05 1
UNIPROTKB|Q48A10 - symbol:CPS_0338 "RNA-binding protein" ... 99 2.4e-05 1
TIGR_CMR|CPS_0338 - symbol:CPS_0338 "RNA-binding protein"... 99 2.4e-05 1
CGD|CAL0004922 - symbol:orf19.6766 species:5476 "Candida ... 107 2.5e-05 1
UNIPROTKB|Q5ADS5 - symbol:NOP13 "Putative uncharacterized... 107 2.5e-05 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 101 2.6e-05 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 109 2.7e-05 1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 100 2.7e-05 1
UNIPROTKB|Q3ZCE8 - symbol:RBM8A "RNA-binding protein 8A" ... 99 2.8e-05 1
UNIPROTKB|F6XAE9 - symbol:RBM8A "Uncharacterized protein"... 99 2.8e-05 1
UNIPROTKB|Q9Y5S9 - symbol:RBM8A "RNA-binding protein 8A" ... 99 2.8e-05 1
RGD|1310099 - symbol:Rbm8a "RNA binding motif protein 8A"... 99 2.8e-05 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 107 2.9e-05 1
ZFIN|ZDB-GENE-040625-116 - symbol:puf60b "poly-U binding ... 108 2.9e-05 1
UNIPROTKB|C9JE21 - symbol:RBM28 "RNA-binding protein 28" ... 101 2.9e-05 1
UNIPROTKB|E2QV85 - symbol:RBM8A "Uncharacterized protein"... 99 3.0e-05 1
UNIPROTKB|I3LI59 - symbol:RBM8A "Uncharacterized protein"... 99 3.0e-05 1
UNIPROTKB|H3BR27 - symbol:RBMX "RNA-binding motif protein... 98 3.0e-05 1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl... 98 3.0e-05 1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl... 98 3.0e-05 1
UNIPROTKB|K7EP16 - symbol:EIF3G "Eukaryotic translation i... 98 3.0e-05 1
UNIPROTKB|K7GMF5 - symbol:RBMX "Uncharacterized protein" ... 98 3.0e-05 1
UNIPROTKB|K7GQ39 - symbol:RBMX "Uncharacterized protein" ... 98 3.0e-05 1
TAIR|locus:2119797 - symbol:AT4G20030 species:3702 "Arabi... 98 3.0e-05 1
POMBASE|SPAC3G6.04 - symbol:rnp24 "RNA-binding protein Rn... 105 3.7e-05 1
DICTYBASE|DDB_G0278349 - symbol:tra2 "putative transforme... 104 3.9e-05 1
ASPGD|ASPL0000073559 - symbol:AN10574 species:162425 "Eme... 111 4.4e-05 1
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 105 4.5e-05 1
DICTYBASE|DDB_G0276725 - symbol:DDB_G0276725 "putative RN... 96 5.0e-05 1
UNIPROTKB|Q9PTX2 - symbol:cirbp "Cold-inducible RNA-bindi... 96 5.0e-05 1
UNIPROTKB|H3BMS0 - symbol:RNPS1 "RNA-binding protein with... 101 5.3e-05 1
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 89 5.4e-05 2
UNIPROTKB|H3BV80 - symbol:RNPS1 "RNA-binding protein with... 99 5.4e-05 1
UNIPROTKB|K7GKR9 - symbol:RBMX "Uncharacterized protein" ... 98 5.7e-05 1
GENEDB_PFALCIPARUM|PF11_0083 - symbol:PF11_0083 "nucleic ... 106 5.7e-05 1
UNIPROTKB|Q8IIT2 - symbol:PF11_0083 "Nucleic acid binding... 106 5.7e-05 1
UNIPROTKB|E9PFS2 - symbol:MKI67IP "MKI67 FHA domain-inter... 98 6.0e-05 1
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 95 6.3e-05 1
ZFIN|ZDB-GENE-050306-51 - symbol:rbm8a "RNA binding motif... 96 6.4e-05 1
UNIPROTKB|E2RRF5 - symbol:RBM19 "Uncharacterized protein"... 108 6.5e-05 1
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 105 6.5e-05 1
TAIR|locus:4515103555 - symbol:AT5G11412 species:3702 "Ar... 96 6.5e-05 1
UNIPROTKB|B4DN89 - symbol:SRSF2 "Serine/arginine-rich-spl... 98 6.9e-05 1
FB|FBgn0264270 - symbol:Sxl "Sex lethal" species:7227 "Dr... 102 7.4e-05 1
UNIPROTKB|P30352 - symbol:SRSF2 "Serine/arginine-rich spl... 98 8.0e-05 1
UNIPROTKB|Q3MHR5 - symbol:SRSF2 "Serine/arginine-rich spl... 98 8.0e-05 1
UNIPROTKB|E2RDB2 - symbol:SRSF2 "Uncharacterized protein"... 98 8.0e-05 1
UNIPROTKB|Q01130 - symbol:SRSF2 "Serine/arginine-rich spl... 98 8.0e-05 1
UNIPROTKB|Q06A98 - symbol:SRSF2 "Serine/arginine-rich spl... 98 8.0e-05 1
MGI|MGI:98284 - symbol:Srsf2 "serine/arginine-rich splici... 98 8.0e-05 1
RGD|1359422 - symbol:Srsf2 "serine/arginine-rich splicing... 98 8.0e-05 1
UNIPROTKB|Q6PDU1 - symbol:Srsf2 "Serine/arginine-rich spl... 98 8.0e-05 1
UNIPROTKB|I3LLT9 - symbol:ZCRB1 "Uncharacterized protein"... 94 8.1e-05 1
WARNING: Descriptions of 255 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1NJ86 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02009328 IPI:IPI00598515
Ensembl:ENSGALT00000032138 ArrayExpress:F1NJ86 Uniprot:F1NJ86
Length = 233
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 38/65 (58%), Positives = 44/65 (67%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R V E LP H +IE VF K G V YVS+P++KSTG KGFAFVEF TKE+A KA+E
Sbjct: 127 RTVYVELLPKNVNHSWIERVFGKCGNVVYVSIPRYKSTGDPKGFAFVEFETKEQAEKAIE 186
Query: 73 LGLNP 77
NP
Sbjct: 187 FLNNP 191
>UNIPROTKB|D6RFF0 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HOGENOM:HOG000113284
HGNC:HGNC:24912 ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966774
ProteinModelPortal:D6RFF0 SMR:D6RFF0 Ensembl:ENST00000505034
ArrayExpress:D6RFF0 Bgee:D6RFF0 Uniprot:D6RFF0
Length = 299
Score = 186 (70.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 37/65 (56%), Positives = 43/65 (66%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R V E LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+A KA+E
Sbjct: 125 RTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIE 184
Query: 73 LGLNP 77
NP
Sbjct: 185 FLNNP 189
>UNIPROTKB|E1BQG3 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AADN02009328 IPI:IPI00680045 Ensembl:ENSGALT00000019679
ArrayExpress:E1BQG3 Uniprot:E1BQG3
Length = 602
Score = 189 (71.6 bits), Expect = 7.2e-14, P = 7.2e-14
Identities = 38/65 (58%), Positives = 44/65 (67%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R V E LP H +IE VF K G V YVS+P++KSTG KGFAFVEF TKE+A KA+E
Sbjct: 127 RTVYVELLPKNVNHSWIERVFGKCGNVVYVSIPRYKSTGDPKGFAFVEFETKEQAEKAIE 186
Query: 73 LGLNP 77
NP
Sbjct: 187 FLNNP 191
>UNIPROTKB|F1MR14 [details] [associations]
symbol:F1MR14 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:DAAA02016483 EMBL:DAAA02016480 EMBL:DAAA02016481
EMBL:DAAA02016482 IPI:IPI00691372 Ensembl:ENSBTAT00000012693
ArrayExpress:F1MR14 Uniprot:F1MR14
Length = 578
Score = 186 (70.5 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 37/65 (56%), Positives = 43/65 (66%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R V E LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+A KA+E
Sbjct: 123 RTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIE 182
Query: 73 LGLNP 77
NP
Sbjct: 183 FLNNP 187
>UNIPROTKB|I3LNK9 [details] [associations]
symbol:I3LNK9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464
Ensembl:ENSSSCT00000031777 OMA:NASEECE Uniprot:I3LNK9
Length = 580
Score = 186 (70.5 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 37/65 (56%), Positives = 43/65 (66%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R V E LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+A KA+E
Sbjct: 125 RTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIE 184
Query: 73 LGLNP 77
NP
Sbjct: 185 FLNNP 189
>UNIPROTKB|E2QW27 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AAEX03016829 ProteinModelPortal:E2QW27
Ensembl:ENSCAFT00000018607 Uniprot:E2QW27
Length = 582
Score = 186 (70.5 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 37/65 (56%), Positives = 43/65 (66%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R V E LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+A KA+E
Sbjct: 124 RTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIE 183
Query: 73 LGLNP 77
NP
Sbjct: 184 FLNNP 188
>UNIPROTKB|Q4G0J3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 EMBL:CH471057
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 HSSP:P05455 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 EMBL:EU667388 EMBL:AF068284 EMBL:BC066945
EMBL:BC107709 EMBL:AL049996 IPI:IPI00294742 IPI:IPI00395536
PIR:T08692 RefSeq:NP_001253968.1 RefSeq:NP_056269.1
RefSeq:NP_057732.2 UniGene:Hs.713663 ProteinModelPortal:Q4G0J3
SMR:Q4G0J3 DIP:DIP-47624N IntAct:Q4G0J3 MINT:MINT-4540675
STRING:Q4G0J3 PhosphoSite:Q4G0J3 DMDM:121945944 PaxDb:Q4G0J3
PRIDE:Q4G0J3 Ensembl:ENST00000324052 Ensembl:ENST00000344442
Ensembl:ENST00000509061 GeneID:51574 KEGG:hsa:51574 UCSC:uc003iay.3
GeneCards:GC04P113559 HGNC:HGNC:24912 HPA:HPA026842 HPA:HPA027930
MIM:612026 neXtProt:NX_Q4G0J3 PharmGKB:PA145148525
InParanoid:Q4G0J3 ChiTaRS:LARP7 GenomeRNAi:51574 NextBio:55403
ArrayExpress:Q4G0J3 Bgee:Q4G0J3 CleanEx:HS_LARP7
Genevestigator:Q4G0J3 Uniprot:Q4G0J3
Length = 582
Score = 186 (70.5 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 37/65 (56%), Positives = 43/65 (66%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R V E LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+A KA+E
Sbjct: 125 RTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIE 184
Query: 73 LGLNP 77
NP
Sbjct: 185 FLNNP 189
>UNIPROTKB|F1S150 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA EMBL:FP236150
Ensembl:ENSSSCT00000009986 Uniprot:F1S150
Length = 582
Score = 186 (70.5 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 37/65 (56%), Positives = 43/65 (66%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R V E LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+A KA+E
Sbjct: 125 RTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIE 184
Query: 73 LGLNP 77
NP
Sbjct: 185 FLNNP 189
>MGI|MGI:107634 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0035562 "negative regulation of chromatin binding"
evidence=IGI] [GO:0036093 "germ cell proliferation" evidence=IMP]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107634 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 CTD:51574
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 ChiTaRS:LARP7 EMBL:AC113952 EMBL:BC020127
EMBL:BC023165 EMBL:BC029178 EMBL:AK012726 EMBL:AK012772
EMBL:AK015041 EMBL:AK162147 IPI:IPI00340860 IPI:IPI00831552
RefSeq:NP_613059.2 UniGene:Mm.291032 ProteinModelPortal:Q05CL8
SMR:Q05CL8 IntAct:Q05CL8 STRING:Q05CL8 PhosphoSite:Q05CL8
PaxDb:Q05CL8 PRIDE:Q05CL8 DNASU:28036 Ensembl:ENSMUST00000029588
GeneID:28036 KEGG:mmu:28036 UCSC:uc008rhd.1
GeneTree:ENSGT00530000063464 InParanoid:Q05CL8 OMA:NNPPEDA
NextBio:306558 Bgee:Q05CL8 CleanEx:MM_LARP7 Genevestigator:Q05CL8
Uniprot:Q05CL8
Length = 570
Score = 185 (70.2 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 37/65 (56%), Positives = 43/65 (66%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R V E LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+A KA+E
Sbjct: 119 RTVYVELLPKNVTHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIE 178
Query: 73 LGLNP 77
NP
Sbjct: 179 FLNNP 183
>RGD|1592474 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0035562
"negative regulation of chromatin binding" evidence=ISO]
[GO:0036093 "germ cell proliferation" evidence=ISO] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 185 (70.2 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 37/65 (56%), Positives = 43/65 (66%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R V E LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+A KA+E
Sbjct: 120 RTVYVELLPKNVTHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIE 179
Query: 73 LGLNP 77
NP
Sbjct: 180 FLNNP 184
>UNIPROTKB|Q5XI01 [details] [associations]
symbol:Larp7 "La-related protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 185 (70.2 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 37/65 (56%), Positives = 43/65 (66%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R V E LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+A KA+E
Sbjct: 120 RTVYVELLPKNVTHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIE 179
Query: 73 LGLNP 77
NP
Sbjct: 180 FLNNP 184
>ZFIN|ZDB-GENE-030131-6896 [details] [associations]
symbol:larp7 "La ribonucleoprotein domain family,
member 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6896 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
EMBL:BC049455 IPI:IPI00509628 RefSeq:NP_956224.1 UniGene:Dr.29131
HSSP:Q7YZ92 ProteinModelPortal:Q7ZWE3 STRING:Q7ZWE3 PRIDE:Q7ZWE3
GeneID:334956 KEGG:dre:334956 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 InParanoid:Q7ZWE3 KO:K15191 OrthoDB:EOG4TXBS0
NextBio:20810607 ArrayExpress:Q7ZWE3 InterPro:IPR014886
Pfam:PF08777 Uniprot:Q7ZWE3
Length = 555
Score = 177 (67.4 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 37/69 (53%), Positives = 47/69 (68%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R V E LP H ++E VFSK G V Y+S+P++KST KGFAFVEF T+E+A KA+E
Sbjct: 133 RTVYVELLPKTVTHIWLERVFSKCGHVVYISIPRYKSTRHSKGFAFVEFETQEQAQKAVE 192
Query: 73 LGLNPCPTD 81
+ NP P D
Sbjct: 193 MLNNP-PED 200
>FB|FBgn0260771 [details] [associations]
symbol:Larp7 "La related protein 7" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0097322 "7SK snRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:AE014298 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 KO:K15191
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
GO:GO:0097322 EMBL:AY061107 RefSeq:NP_524795.2 UniGene:Dm.31047
SMR:Q9W362 IntAct:Q9W362 STRING:Q9W362 EnsemblMetazoa:FBtr0301275
GeneID:44900 KEGG:dme:Dmel_CG42569 UCSC:CG12058-RA
FlyBase:FBgn0260771 InParanoid:Q9W362 OMA:PGLIVEC OrthoDB:EOG4CVDQ5
GenomeRNAi:44900 NextBio:837804 Uniprot:Q9W362
Length = 595
Score = 144 (55.7 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 27/55 (49%), Positives = 36/55 (65%)
Query: 18 EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
E LP A HD+++ VFS+YG V YVSLP + T K+K FAF+EF KA++
Sbjct: 152 EALPANATHDWLKEVFSRYGPVAYVSLPHYPGTKKIKEFAFIEFEKSGSLEKAVK 206
>WB|WBGene00004387 [details] [associations]
symbol:rnp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0009790 "embryo development" evidence=IMP] [GO:0001703
"gastrulation with mouth forming first" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003723 GO:GO:0006396 GO:GO:0040035 GO:GO:0040022 HSSP:Q9V535
eggNOG:COG0724 GeneTree:ENSGT00550000074641 GO:GO:0001703
EMBL:Z32683 HOGENOM:HOG000183826 KO:K12876 PIR:F88427
RefSeq:NP_497891.1 ProteinModelPortal:Q21832 SMR:Q21832
DIP:DIP-26500N IntAct:Q21832 MINT:MINT-1100537 STRING:Q21832
PaxDb:Q21832 EnsemblMetazoa:R07E5.14.1 EnsemblMetazoa:R07E5.14.2
EnsemblMetazoa:R07E5.14.3 GeneID:175572 KEGG:cel:CELE_R07E5.14
UCSC:R07E5.14.2 CTD:175572 WormBase:R07E5.14 InParanoid:Q21832
OMA:NIHEEAT NextBio:888726 Uniprot:Q21832
Length = 142
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
G +V + EA D + FS+YGK+ + L + TG LKG+A VE+ T++EA +A+
Sbjct: 54 GWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAI 113
Query: 72 E 72
+
Sbjct: 114 D 114
>GENEDB_PFALCIPARUM|MAL8P1.83 [details] [associations]
symbol:MAL8P1.83 "eukaryotictranslation
initiation factor, putative" species:5833 "Plasmodium falciparum"
[GO:0006412 "translation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743 HSSP:P19339
KO:K03248 PANTHER:PTHR10352 HOGENOM:HOG000239560 EMBL:AL844507
RefSeq:XP_001349368.1 ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3
MINT:MINT-1709542 EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434
KEGG:pfa:MAL8P1.83 EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR
ProtClustDB:CLSZ2435783 Uniprot:Q8IAZ3
Length = 266
Score = 99 (39.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L + + + ++F K G + + L K K T KGFAF+ +S +EEA +A+E
Sbjct: 192 LSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSKGFAFITYSKREEAKRAIE 244
Score = 34 (17.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 9 KKYGRVVLKEKLPPE 23
KK VV+K+KL E
Sbjct: 70 KKIQEVVIKKKLNKE 84
>UNIPROTKB|Q8IAZ3 [details] [associations]
symbol:MAL8P1.83 "Eukaryotic translation initiation factor
3 subunit G" species:36329 "Plasmodium falciparum 3D7" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 HSSP:P19339 KO:K03248 PANTHER:PTHR10352
HOGENOM:HOG000239560 EMBL:AL844507 RefSeq:XP_001349368.1
ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3 MINT:MINT-1709542
EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434 KEGG:pfa:MAL8P1.83
EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR ProtClustDB:CLSZ2435783
Uniprot:Q8IAZ3
Length = 266
Score = 99 (39.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L + + + ++F K G + + L K K T KGFAF+ +S +EEA +A+E
Sbjct: 192 LSEDVNENELSNLFGKVGNIVRMFLAKHKETQNSKGFAFITYSKREEAKRAIE 244
Score = 34 (17.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 9 KKYGRVVLKEKLPPE 23
KK VV+K+KL E
Sbjct: 70 KKIQEVVIKKKLNKE 84
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 122 (48.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 65
E + + +K + PE D ++F KYG VT SL + + TGK +GF FV F++ E
Sbjct: 236 EMKANFTNIYVKN-INPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHE 294
Query: 66 EATKALE 72
+A+KA++
Sbjct: 295 DASKAVQ 301
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 122 (48.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 67
NK ++++K LP E+ I +F+ YG++ V +PK K G +GF FVEF T+EEA
Sbjct: 791 NKPSSKIIIKN-LPFESTIKEIRKLFTAYGEIQSVRIPK-KPNGGHRGFGFVEFLTEEEA 848
Query: 68 TKALE-LG 74
A+E LG
Sbjct: 849 KNAMEALG 856
>POMBASE|SPAC23A1.09 [details] [associations]
symbol:SPAC23A1.09 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=NAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC23A1.09
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045292 HOGENOM:HOG000183826
KO:K12876 HSSP:Q9Y5S9 PIR:T38229 RefSeq:NP_594439.1
ProteinModelPortal:O42847 SMR:O42847 STRING:O42847
EnsemblFungi:SPAC23A1.09.1 GeneID:2541998 KEGG:spo:SPAC23A1.09
eggNOG:NOG246776 OMA:ITETTEG OrthoDB:EOG4M9523 NextBio:20803079
Uniprot:O42847
Length = 121
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 20/61 (32%), Positives = 39/61 (63%)
Query: 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
G +++ + PEA + +E +F+ +G V + L + TG +KG+A +E++T E+A KA+
Sbjct: 9 GYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68
Query: 72 E 72
+
Sbjct: 69 D 69
>POMBASE|SPAC25G10.01 [details] [associations]
symbol:SPAC25G10.01 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
Length = 297
Score = 113 (44.8 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 65
E ++ G + + + D ++ +FSK+G VT+V + + T +GF F+ FST E
Sbjct: 94 EGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
Query: 66 EATKALELGLN 76
EAT A++ LN
Sbjct: 154 EATSAID-NLN 163
>TAIR|locus:2055951 [details] [associations]
symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
Uniprot:Q9SHZ5
Length = 382
Score = 101 (40.6 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 23 EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDY 82
+ H+ +++ F YG++T S+ K TG+ KGF FV F T++ A AL+ NP Y
Sbjct: 173 DTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALK---NPEKRMY 229
Query: 83 QSSILTTTSR 92
++ +R
Sbjct: 230 NRTVSCLPAR 239
Score = 32 (16.3 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 6 ENNKKYGRVVLKEKLP 21
+ +KKY V +EK P
Sbjct: 55 KKSKKYEEVEEEEKSP 70
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 117 (46.2 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 28/67 (41%), Positives = 43/67 (64%)
Query: 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATK 69
K R++++ L + D +++VF+ YG V V++PK K GK++GFAFV+F EA K
Sbjct: 112 KKARLIIRN-LSFKCSEDDLKAVFTHYGTVLEVNIPK-KPDGKMRGFAFVQFKNLLEAGK 169
Query: 70 ALELGLN 76
AL+ G N
Sbjct: 170 ALK-GAN 175
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 117 (46.2 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 26/67 (38%), Positives = 45/67 (67%)
Query: 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATK 69
K R++++ L + D +++VFS++G + V++P+ K GK++GFAFV+F EA K
Sbjct: 112 KKARLIIRN-LSFKCSEDDLKTVFSQFGTILEVNIPR-KPDGKMRGFAFVQFKNLLEAGK 169
Query: 70 ALELGLN 76
AL+ G+N
Sbjct: 170 ALK-GMN 175
>GENEDB_PFALCIPARUM|PF14_0057 [details] [associations]
symbol:PF14_0057 "RNA binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
G +++ + EA DYI+ VF ++G++ + L + TG LKG+AF+E+ +A +A+
Sbjct: 22 GWIIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAI 81
Query: 72 E 72
+
Sbjct: 82 D 82
>UNIPROTKB|Q8IM34 [details] [associations]
symbol:PF14_0057 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
G +++ + EA DYI+ VF ++G++ + L + TG LKG+AF+E+ +A +A+
Sbjct: 22 GWIIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAI 81
Query: 72 E 72
+
Sbjct: 82 D 82
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/62 (46%), Positives = 37/62 (59%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQSSILT 88
+ FS+YG+V V + K + KGFA+V FS+KEEA KAL L LN D + IL
Sbjct: 37 LTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL-LELNAQLVDGRVVILD 95
Query: 89 TT 90
TT
Sbjct: 96 TT 97
>DICTYBASE|DDB_G0275459 [details] [associations]
symbol:DDB_G0275459 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275459 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724 KO:K11294
RefSeq:XP_643642.1 ProteinModelPortal:Q75K16 STRING:Q75K16
PRIDE:Q75K16 EnsemblProtists:DDB0231494 GeneID:8620229
KEGG:ddi:DDB_G0275459 InParanoid:Q75K16 OMA:LRINGAN Uniprot:Q75K16
Length = 299
Score = 111 (44.1 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
++ FSK G ++ VSLP ++ +G+LKGFAFV F +++ KA+ L
Sbjct: 177 VKEFFSKCGSISRVSLPVYEDSGRLKGFAFVSFDSEDAVEKAIAL 221
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 108 (43.1 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAT 68
K+ G ++++ L + E D ++ +FSK+G V +P K GK KGFAFV+F EA
Sbjct: 121 KENGWLIIRN-LSFKCEDDELKQIFSKFGTVLETRIP-LKPDGKKKGFAFVQFKCVSEAE 178
Query: 69 KA 70
KA
Sbjct: 179 KA 180
Score = 100 (40.3 bits), Expect = 0.00041, P = 0.00041
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
GR + L ++E + +E V ++G+++YV + TG KG AF +F +KE A K +
Sbjct: 438 GRTIFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDTGVSKGCAFAQFKSKEAAEKCI 497
Query: 72 ELGLN 76
L+
Sbjct: 498 AAALD 502
Score = 99 (39.9 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAT 68
K R++++ L + E D ++ +FS++G V +P K GK +GFAFV F EA
Sbjct: 233 KLKSRLIIRN-LSFKCEEDDLKQIFSEFGTVLEAKIP-LKPDGKKRGFAFVLFKRMPEAG 290
Query: 69 KAL 71
KAL
Sbjct: 291 KAL 293
Score = 33 (16.7 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 76 NPCPTDYQSSILTTTSRLSFGITPLGFE 103
NP P+D LSF G E
Sbjct: 429 NPLPSDVNEGRTIFIRNLSFDSEEEGLE 456
Score = 33 (16.7 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 64 KEEATKALELGLNPCPTDYQSSILTTTSRLSFGITP 99
K + K + L P+ + ++ +TS++S + P
Sbjct: 785 KRDKGKQPVVKLKKTPSRKERNMSKSTSKISMNMKP 820
>UNIPROTKB|A4RHN3 [details] [associations]
symbol:TIF35 "Eukaryotic translation initiation factor 3
subunit G" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 EMBL:CM001232 eggNOG:COG0724 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
RefSeq:XP_003715298.1 ProteinModelPortal:A4RHN3 STRING:A4RHN3
GeneID:2682994 KEGG:mgr:MGG_07109 OrthoDB:EOG4QJVX7 Uniprot:A4RHN3
Length = 303
Score = 111 (44.1 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 24 AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
AE + +F ++G+VT V L K + TG KGFAF+ F+ +E+A KA
Sbjct: 234 AEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAVKA 280
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 111 (44.1 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 27 DYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
D + +F+KYGKV V +P+ + TG +GFAFV + K+EA KA+E
Sbjct: 30 DDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVE 75
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 89 (36.4 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-MAMN 68
Score = 35 (17.4 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 102 FESGGWWFKSS 112
+ S GWW++ S
Sbjct: 169 WRSKGWWWEFS 179
>UNIPROTKB|D4A5K7 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
NextBio:664628 Uniprot:D4A5K7
Length = 700
Score = 116 (45.9 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATK 69
K R++++ L + D ++SVF+ YG V V++P+ K GK++GFAF++F EA K
Sbjct: 112 KKARLIIRN-LSFKCSEDDLKSVFTHYGTVLEVNIPR-KPDGKMRGFAFIQFKNLLEAGK 169
Query: 70 ALELGLN 76
AL+ G N
Sbjct: 170 ALK-GAN 175
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 116 (45.9 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATK 69
K R++++ L + D ++SVF+ YG V V++P+ K GK++GFAF++F EA K
Sbjct: 112 KKARLIIRN-LSFKCSEDDLKSVFTHYGTVLEVNIPR-KPDGKMRGFAFIQFKNLLEAGK 169
Query: 70 ALELGLN 76
AL+ G N
Sbjct: 170 ALK-GAN 175
>ASPGD|ASPL0000076347 [details] [associations]
symbol:AN4505 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 EMBL:BN001303
EMBL:AACD01000078 HOGENOM:HOG000183826 KO:K12876 eggNOG:NOG246776
OrthoDB:EOG4M9523 RefSeq:XP_662109.1 ProteinModelPortal:Q5B4M5
SMR:Q5B4M5 STRING:Q5B4M5 EnsemblFungi:CADANIAT00005939
GeneID:2872307 KEGG:ani:AN4505.2 OMA:IEGWIII Uniprot:Q5B4M5
Length = 158
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 19/61 (31%), Positives = 38/61 (62%)
Query: 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
G +++ + EA + + +F++YG++ SL + TG +KG+A +E+ST EA +A+
Sbjct: 41 GWIIIATNIHEEASEEDVTDLFAEYGEIKNFSLNLDRRTGYVKGYALIEYSTLPEAAEAI 100
Query: 72 E 72
+
Sbjct: 101 K 101
>WB|WBGene00001230 [details] [associations]
symbol:eif-3.G species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00343 SMART:SM00360 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0000003
GO:GO:0003743 EMBL:Z50044 eggNOG:COG0724
GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOGENOM:HOG000239560 PIR:T21238 RefSeq:NP_495778.1
ProteinModelPortal:Q19706 SMR:Q19706 STRING:Q19706 PaxDb:Q19706
EnsemblMetazoa:F22B5.2.1 EnsemblMetazoa:F22B5.2.2
EnsemblMetazoa:F22B5.2.3 GeneID:174346 KEGG:cel:CELE_F22B5.2
CTD:174346 WormBase:F22B5.2 InParanoid:Q19706 OMA:TRTETAF
NextBio:883648 Uniprot:Q19706
Length = 256
Score = 107 (42.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 5 VENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTK 64
++ N+ LP E D + +F K G+V + + + K TG KGFAFV F ++
Sbjct: 168 IDRNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESR 227
Query: 65 EEATKAL 71
++A +A+
Sbjct: 228 DDAARAI 234
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/94 (30%), Positives = 45/94 (47%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP 79
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A +N
Sbjct: 15 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR-DMNGKS 73
Query: 80 TDYQSSILTTTSRLSFGITPLGFESGGWWFKSSH 113
D ++ + ++ SF L G+ K S+
Sbjct: 74 LDGKAIKVEQATKPSFENVYLSPRDDGYSTKDSY 107
>UNIPROTKB|F1RXX7 [details] [associations]
symbol:MKI67 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 OMA:QVRKRIT InterPro:IPR021043
Pfam:PF12196 EMBL:AEMK01028690 EMBL:CU655817
Ensembl:ENSSSCT00000017130 Uniprot:F1RXX7
Length = 294
Score = 108 (43.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 25/67 (37%), Positives = 35/67 (52%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 65
E K V+ LPP I + FS++G VT + L + K TG KG+ FVEF +++
Sbjct: 38 EKQKLTPGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESED 97
Query: 66 EATKALE 72
A A E
Sbjct: 98 VARIAAE 104
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 113 (44.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATK 69
K R++++ L + D +++VF +YG V V++P+ K GK++GFAFV+F EA K
Sbjct: 112 KKARLIIRN-LSFKCSEDDLKTVFGQYGAVLEVNIPR-KPDGKMRGFAFVQFKNLLEAGK 169
Query: 70 ALE 72
AL+
Sbjct: 170 ALK 172
>UNIPROTKB|J9NXM6 [details] [associations]
symbol:MKI67IP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 KO:K14838 InterPro:IPR021043
Pfam:PF12196 EMBL:AAEX03011863 RefSeq:XP_003639749.1
ProteinModelPortal:J9NXM6 Ensembl:ENSCAFT00000044914
GeneID:100856252 KEGG:cfa:100856252 Uniprot:J9NXM6
Length = 297
Score = 107 (42.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
A+ E K V+ LPP I + FS++G VT L + K TG KG+AFVEF
Sbjct: 34 AQQKEKEKLTPGVIYVGHLPPALYETQIRAYFSQFGTVTRFRLSRSKRTGNSKGYAFVEF 93
Query: 62 STKEEA 67
++++ A
Sbjct: 94 ASEDVA 99
>UNIPROTKB|E2RHG8 [details] [associations]
symbol:MKI67IP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 OMA:QVRKRIT InterPro:IPR021043
Pfam:PF12196 EMBL:AAEX03011863 Ensembl:ENSCAFT00000007586
Uniprot:E2RHG8
Length = 299
Score = 107 (42.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
A+ E K V+ LPP I + FS++G VT L + K TG KG+AFVEF
Sbjct: 34 AQQKEKEKLTPGVIYVGHLPPALYETQIRAYFSQFGTVTRFRLSRSKRTGNSKGYAFVEF 93
Query: 62 STKEEA 67
++++ A
Sbjct: 94 ASEDVA 99
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 108 (43.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 67
N+ G V +P + + +F+K+G + +++ K K T KG AF+ FSTKEEA
Sbjct: 13 NQLGGFTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEA 72
Query: 68 TKAL 71
AL
Sbjct: 73 DNAL 76
>UNIPROTKB|Q3SZM1 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9913 "Bos taurus" [GO:0010923 "negative
regulation of phosphatase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000794
GO:GO:0010923 EMBL:BC102791 IPI:IPI00706135 RefSeq:NP_001029526.1
UniGene:Bt.53167 HSSP:Q9BYG3 ProteinModelPortal:Q3SZM1 SMR:Q3SZM1
STRING:Q3SZM1 Ensembl:ENSBTAT00000031564 GeneID:509598
KEGG:bta:509598 CTD:84365 eggNOG:NOG244773
GeneTree:ENSGT00390000011515 HOGENOM:HOG000242795
HOVERGEN:HBG057796 InParanoid:Q3SZM1 KO:K14838 OMA:QVRKRIT
OrthoDB:EOG4MKNGX NextBio:20869038 InterPro:IPR021043 Pfam:PF12196
Uniprot:Q3SZM1
Length = 296
Score = 106 (42.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 65
E K V+ LPP I + FS++G VT L + K TG KG+ FVEF +++
Sbjct: 38 EKQKPTPGVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGFVEFESED 97
Query: 66 EATKALE 72
A A E
Sbjct: 98 VAKIAAE 104
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 112 (44.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 65
++NKK G++++K LP EA + +F+ +G++ V +PK K +GFAFVEF +
Sbjct: 757 KSNKKSGKIIVKN-LPFEATRKDVFELFNSFGQLKSVRVPK-KFDKSARGFAFVEFLLPK 814
Query: 66 EATKALE 72
EA A++
Sbjct: 815 EAENAMD 821
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 111 (44.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 65
E + + +K + PE E + +F K+G++T +L + S GK +GF FV FST E
Sbjct: 217 EMKANFTNIYIKN-IDPEVEDEEFRKLFEKFGEITSATLSR-DSEGKSRGFGFVNFSTHE 274
Query: 66 EATKALE 72
A A+E
Sbjct: 275 SAQAAVE 281
>WB|WBGene00011043 [details] [associations]
symbol:rbm-28 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0009058 "biosynthetic
process" evidence=IEA] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040026
"positive regulation of vulval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0040035 GO:GO:0040026 EMBL:Z83119 HSSP:P52298
eggNOG:NOG323727 GeneTree:ENSGT00550000074976 KO:K14573 OMA:MHALECL
PIR:T23934 RefSeq:NP_497077.2 ProteinModelPortal:O62325 SMR:O62325
STRING:O62325 PaxDb:O62325 EnsemblMetazoa:R05H10.2.1
EnsemblMetazoa:R05H10.2.2 GeneID:175145 KEGG:cel:CELE_R05H10.2
UCSC:R05H10.2 CTD:175145 WormBase:R05H10.2 HOGENOM:HOG000021963
InParanoid:O62325 NextBio:886958 Uniprot:O62325
Length = 608
Score = 110 (43.8 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
G+VV L + + + I+ SK+GK+ + K+K +G KG AFV FST EA+ +
Sbjct: 262 GKVVFLRNLSYDTKEELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCI 321
Query: 72 E 72
E
Sbjct: 322 E 322
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 107 (42.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
AEL ++ V +K + + + ++ VFSKYGK V + S+GK KGF FV F
Sbjct: 180 AELRSKASEFTNVYIKN-FGGDMDDERLKDVFSKYGKTLSVKVMT-DSSGKSKGFGFVSF 237
Query: 62 STKEEATKALE 72
+ E A KA+E
Sbjct: 238 DSHEAAKKAVE 248
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 111 (44.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 25/67 (37%), Positives = 44/67 (65%)
Query: 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATK 69
K R++++ L + D +++VF+++G V V++P+ K GK++GF FV+F EA K
Sbjct: 112 KKARLIIRN-LSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKMRGFGFVQFKNLLEAGK 169
Query: 70 ALELGLN 76
AL+ G+N
Sbjct: 170 ALK-GMN 175
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
AEL K++ V +K + + + ++ +FSKYGK V + TGK KGF FV F
Sbjct: 181 AELGAKAKEFTNVYIKN-FGDDMDDERLKELFSKYGKTLSVKVMT-DPTGKSKGFGFVSF 238
Query: 62 STKEEATKALE 72
E+A KA+E
Sbjct: 239 EKHEDANKAVE 249
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R + LP A + +FS++G V V L K K TGK +GF FVE ++ ++ KA+
Sbjct: 71 RTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMAS-DDLDKAIS 129
Query: 73 LGLNPCPTDYQSSIL 87
LN T++Q L
Sbjct: 130 -ALND--TEFQQRTL 141
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R + LP A + +FS++G V V L K K TGK +GF FVE ++ ++ KA+
Sbjct: 71 RTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMAS-DDLDKAIS 129
Query: 73 LGLNPCPTDYQSSIL 87
LN T++Q L
Sbjct: 130 -ALND--TEFQQRTL 141
>CGD|CAL0004922 [details] [associations]
symbol:orf19.6766 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 107 (42.7 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 5 VENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTK 64
+ ++ R++ L + D +E F G++ + + F+ TGK KGFAF++F +
Sbjct: 207 INSSNPPSRILFVGNLSFDTTEDLLEEHFRHCGEIVKIRMATFQDTGKCKGFAFIDFKDE 266
Query: 65 EEATKALE 72
E AT AL+
Sbjct: 267 EGATTALK 274
>UNIPROTKB|Q5ADS5 [details] [associations]
symbol:NOP13 "Putative uncharacterized protein NOP13"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 107 (42.7 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 5 VENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTK 64
+ ++ R++ L + D +E F G++ + + F+ TGK KGFAF++F +
Sbjct: 207 INSSNPPSRILFVGNLSFDTTEDLLEEHFRHCGEIVKIRMATFQDTGKCKGFAFIDFKDE 266
Query: 65 EEATKALE 72
E AT AL+
Sbjct: 267 EGATTALK 274
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 101 (40.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
AEL K++ V +K E + + ++ +FS++GK V + + GK KGF FV +
Sbjct: 94 AELGAKAKEFTNVYIKN-FGEEVDDESLKELFSQFGKTLSVKVMR-DPNGKSKGFGFVSY 151
Query: 62 STKEEATKALE 72
E+A KA+E
Sbjct: 152 EKHEDANKAVE 162
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 109 (43.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
++L E Y + +K + E + + +F+K+G + SL K + GKLKGF FV +
Sbjct: 209 SQLEETKAHYTNLYVKN-INSETTDEQFQELFAKFGPIVSASLEK-DADGKLKGFGFVNY 266
Query: 62 STKEEATKALELGLN 76
E+A KA+E LN
Sbjct: 267 EKHEDAVKAVE-ALN 280
Score = 107 (42.7 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 5 VENNKKYGRVVLKEK-LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFST 63
+E KY V L K L + + +E F+ YG +T + + ++ GK KGF FV FST
Sbjct: 313 LEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTEN-GKSKGFGFVCFST 371
Query: 64 KEEATKAL 71
EEATKA+
Sbjct: 372 PEEATKAI 379
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 100 (40.3 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E FSKYG +T V + + + T + +GF FV F ++A ALE G+N
Sbjct: 21 LEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALE-GMN 67
>UNIPROTKB|Q3ZCE8 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724
GO:GO:0035145 GeneTree:ENSGT00550000074641 HSSP:P52298
EMBL:BT025376 EMBL:BC102484 IPI:IPI00705285 IPI:IPI00939094
RefSeq:NP_001030401.1 UniGene:Bt.49450 ProteinModelPortal:Q3ZCE8
SMR:Q3ZCE8 STRING:Q3ZCE8 PRIDE:Q3ZCE8 Ensembl:ENSBTAT00000011016
GeneID:518045 KEGG:bta:518045 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 InParanoid:Q3ZCE8 KO:K12876 OMA:WILFVTS
OrthoDB:EOG42822W NextBio:20872569 Uniprot:Q3ZCE8
Length = 174
Score = 99 (39.9 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 23 EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
EA + I F++YG++ + L + TG LKG+ VE+ T +EA A+E GLN
Sbjct: 83 EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME-GLN 135
>UNIPROTKB|F6XAE9 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GeneTree:ENSGT00550000074641 CTD:9939 KO:K12876 OMA:WILFVTS
Ensembl:ENSCAFT00000017835 EMBL:AAEX03011037 RefSeq:XP_533035.1
ProteinModelPortal:F6XAE9 GeneID:475827 KEGG:cfa:475827
Uniprot:F6XAE9
Length = 174
Score = 99 (39.9 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 23 EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
EA + I F++YG++ + L + TG LKG+ VE+ T +EA A+E GLN
Sbjct: 83 EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME-GLN 135
>UNIPROTKB|Q9Y5S9 [details] [associations]
symbol:RBM8A "RNA-binding protein 8A" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005737 "cytoplasm" evidence=NAS] [GO:0003729 "mRNA binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0035145 "exon-exon junction
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005654 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0003729
Gene3D:3.30.70.330 TCDB:3.A.18.1.1 GO:GO:0006406 EMBL:AL160282
GO:GO:0000398 GO:GO:0071013 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0035145 PDB:2HYI PDB:2J0Q PDB:2J0S PDB:2XB2 PDB:3EX7
PDBsum:2HYI PDBsum:2J0Q PDBsum:2J0S PDBsum:2XB2 PDBsum:3EX7
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 EMBL:CH471244
PDB:1P27 PDBsum:1P27 CTD:9939 HOGENOM:HOG000183826
HOVERGEN:HBG055173 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:AF127761 EMBL:AF198620 EMBL:AF231511 EMBL:AF231512
EMBL:AF299118 EMBL:AF403012 EMBL:AF182415 EMBL:AF161463
EMBL:CR541823 EMBL:CR541805 EMBL:AK075009 EMBL:BC017088
IPI:IPI00001757 IPI:IPI00216659 RefSeq:NP_005096.1
RefSeq:XP_003960226.1 UniGene:Hs.591455 ProteinModelPortal:Q9Y5S9
SMR:Q9Y5S9 DIP:DIP-33070N IntAct:Q9Y5S9 MINT:MINT-265248
STRING:Q9Y5S9 PhosphoSite:Q9Y5S9 DMDM:10720244 PaxDb:Q9Y5S9
PRIDE:Q9Y5S9 DNASU:9939 Ensembl:ENST00000330165
Ensembl:ENST00000369307 Ensembl:ENST00000578414
Ensembl:ENST00000583313 GeneID:101060541 GeneID:9939
KEGG:hsa:101060541 KEGG:hsa:9939 UCSC:uc001ent.2 UCSC:uc001enu.2
GeneCards:GC01P145507 HGNC:HGNC:9905 HPA:CAB012803 HPA:HPA018403
MIM:605313 neXtProt:NX_Q9Y5S9 Orphanet:3320 PharmGKB:PA34270
InParanoid:Q9Y5S9 PhylomeDB:Q9Y5S9 ChiTaRS:RBM8A
EvolutionaryTrace:Q9Y5S9 GenomeRNAi:9939 NextBio:37498
PMAP-CutDB:Q9Y5S9 Bgee:Q9Y5S9 CleanEx:HS_RBM8A
Genevestigator:Q9Y5S9 GermOnline:ENSG00000131795 Uniprot:Q9Y5S9
Length = 174
Score = 99 (39.9 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 23 EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
EA + I F++YG++ + L + TG LKG+ VE+ T +EA A+E GLN
Sbjct: 83 EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME-GLN 135
>RGD|1310099 [details] [associations]
symbol:Rbm8a "RNA binding motif protein 8A" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA;ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR008111 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738
PROSITE:PS50102 SMART:SM00360 RGD:1310099 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051028 GO:GO:0071013 eggNOG:COG0724 GO:GO:0035145
GeneTree:ENSGT00550000074641 CTD:9939 HOGENOM:HOG000183826
KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W EMBL:DQ359102
IPI:IPI00210002 RefSeq:NP_001258067.1 RefSeq:XP_001059872.1
UniGene:Rn.37716 ProteinModelPortal:Q27W01 SMR:Q27W01 STRING:Q27W01
PhosphoSite:Q27W01 PRIDE:Q27W01 Ensembl:ENSRNOT00000028807
GeneID:295284 KEGG:rno:295284 UCSC:RGD:1310099 InParanoid:Q27W01
NextBio:639304 Genevestigator:Q27W01 Uniprot:Q27W01
Length = 174
Score = 99 (39.9 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 23 EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
EA + I F++YG++ + L + TG LKG+ VE+ T +EA A+E GLN
Sbjct: 83 EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME-GLN 135
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 107 (42.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
AEL ++ V +K + + + ++ VFSKYGK V + S+GK KGF FV F
Sbjct: 238 AELRSKASEFTNVYIKN-FGGDMDDERLKDVFSKYGKTLSVKVMT-DSSGKSKGFGFVSF 295
Query: 62 STKEEATKALE 72
+ E A KA+E
Sbjct: 296 DSHEAAKKAVE 306
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 108 (43.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 3 ELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFS 62
+L E + Y R+ + + P+ D I+SVF +GK+ L + +TGK KGF F+E+
Sbjct: 174 QLAEEARAYNRIYVAS-IHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYE 232
Query: 63 TKEEATKAL 71
+ + A+
Sbjct: 233 KPQSSLDAV 241
>UNIPROTKB|C9JE21 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010655
EMBL:AC018635 HGNC:HGNC:21863 ChiTaRS:RBM28 IPI:IPI00944978
ProteinModelPortal:C9JE21 SMR:C9JE21 STRING:C9JE21
Ensembl:ENST00000459726 ArrayExpress:C9JE21 Bgee:C9JE21
Uniprot:C9JE21
Length = 204
Score = 101 (40.6 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 10 KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATK 69
K R++++ L + D +++VF+++G V V++P+ K GK++GF FV+F EA K
Sbjct: 146 KKARLIIRN-LSFKCSEDDLKTVFAQFGAVLEVNIPR-KPDGKMRGFGFVQFKNLLEAGK 203
Query: 70 A 70
A
Sbjct: 204 A 204
>UNIPROTKB|E2QV85 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 GO:GO:0071013
GO:GO:0035145 ProteinModelPortal:E2QV85 Ensembl:ENSCAFT00000017835
Uniprot:E2QV85
Length = 177
Score = 99 (39.9 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 23 EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
EA + I F++YG++ + L + TG LKG+ VE+ T +EA A+E GLN
Sbjct: 86 EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME-GLN 138
>UNIPROTKB|I3LI59 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 GO:GO:0071013 GO:GO:0035145
GeneTree:ENSGT00550000074641 OMA:WILFVTS EMBL:CU606940
Ensembl:ENSSSCT00000022923 Uniprot:I3LI59
Length = 177
Score = 99 (39.9 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 23 EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
EA + I F++YG++ + L + TG LKG+ VE+ T +EA A+E GLN
Sbjct: 86 EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME-GLN 138
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 15 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 12 GRVVLK-EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
G LK + L D + VF KYG+V V +P+ + T + +GFAFV F K +A A
Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71
Query: 71 LE 72
++
Sbjct: 72 MD 73
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 12 GRVVLK-EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
G LK + L D + VF KYG+V V +P+ + T + +GFAFV F K +A A
Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71
Query: 71 LE 72
++
Sbjct: 72 MD 73
>UNIPROTKB|K7EP16 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC020931 PANTHER:PTHR10352 HGNC:HGNC:3274
Ensembl:ENST00000593054 Uniprot:K7EP16
Length = 118
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 18 EKLPPEAEHDY----IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
E + P D ++ +F +G ++ + L K K+TG+ KGFAF+ F +E+A +A+
Sbjct: 38 ESMQPNRREDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 95
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 17 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 67
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 17 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 67
>TAIR|locus:2119797 [details] [associations]
symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
Uniprot:Q67XI5
Length = 152
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 17/58 (29%), Positives = 37/58 (63%)
Query: 15 VLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
++ LP D+++ FS +G++ V L K ++ + KG+AF++F+++++A A+E
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIE 99
>POMBASE|SPAC3G6.04 [details] [associations]
symbol:rnp24 "RNA-binding protein Rnp24" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC3G6.04 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 HOGENOM:HOG000193653
OrthoDB:EOG47DDRF EMBL:U24430 EMBL:AB027862 PIR:T38723
RefSeq:NP_594970.1 ProteinModelPortal:Q09100 STRING:Q09100
EnsemblFungi:SPAC3G6.04.1 GeneID:2542965 KEGG:spo:SPAC3G6.04
NextBio:20804000 Uniprot:Q09100
Length = 369
Score = 105 (42.0 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
A + + K+ ++ L E ++ F + G++ V L F+ TGK KGF FV+F
Sbjct: 217 ASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
Query: 62 STKEEATKALELGLNPCPTDY 82
+ KA+ELG N +Y
Sbjct: 277 PDIDTCMKAMELGHNSWRLEY 297
>DICTYBASE|DDB_G0278349 [details] [associations]
symbol:tra2 "putative transformer-2 protein"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0278349 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
GenomeReviews:CM000152_GR EMBL:AAFI02000023 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 HSSP:P62995 KO:K12897 eggNOG:NOG297815
RefSeq:XP_642304.1 ProteinModelPortal:Q54Y98 PRIDE:Q54Y98
EnsemblProtists:DDB0233352 GeneID:8621510 KEGG:ddi:DDB_G0278349
OMA:GIHPRLT Uniprot:Q54Y98
Length = 326
Score = 104 (41.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L P+ E ++ FS++GK+ +V L + TG+ K F FV F KE+A +A E
Sbjct: 120 LAPQTEERDLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVYFENKEDAVRAKE 172
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 111 (44.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
GR + + A D ++ +FS++G V V LP+ K G KGF +V FS+KEEAT AL
Sbjct: 995 GREIHVSNVNWSASEDDLKELFSRFGTVELVRLPR-KVDGGSKGFGYVVFSSKEEATAAL 1053
Query: 72 EL 73
+
Sbjct: 1054 AM 1055
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 105 (42.0 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 24 AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
A+ D I +F+K+G+V V +P T + KGF +V+FS E+A KAL+
Sbjct: 278 ADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALD 326
>DICTYBASE|DDB_G0276725 [details] [associations]
symbol:DDB_G0276725 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0276725 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:COG0724
RefSeq:XP_643007.1 ProteinModelPortal:Q550X7
EnsemblProtists:DDB0202911 GeneID:8620667 KEGG:ddi:DDB_G0276725
InParanoid:Q550X7 Uniprot:Q550X7
Length = 78
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 19/53 (35%), Positives = 35/53 (66%)
Query: 27 DYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP 79
+ +++ FS YG++ + K K TG +G+A++E++ KE+A KA++ LN P
Sbjct: 18 EILKTKFSVYGEIQSLVFVKGKETGISEGYAYIEYNNKEDAVKAID-DLNDQP 69
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 23 EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+ + +E+VFSKYG++ V + K + T + +GF FV F E+A A+ G+N
Sbjct: 16 DTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMA-GMN 68
>UNIPROTKB|H3BMS0 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1
ProteinModelPortal:H3BMS0 SMR:H3BMS0 Ensembl:ENST00000567147
Bgee:H3BMS0 Uniprot:H3BMS0
Length = 257
Score = 101 (40.6 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 19 KLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALE-LGLN 76
+L D+I +FS YGK+ + +P + L KG+A+VEF +EA KAL+ +
Sbjct: 144 RLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG 203
Query: 77 PCP 79
P P
Sbjct: 204 PAP 206
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 89 (36.4 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 21/74 (28%), Positives = 41/74 (55%)
Query: 3 ELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFS 62
E+ + K+ V + + L + ++ ++S F+K+G+V+ + + T K KG+ FV F
Sbjct: 216 EMRIDTSKHFHVFVGD-LSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFP 274
Query: 63 TKEEATKALELGLN 76
K+ A A+ G+N
Sbjct: 275 NKQNAENAIA-GMN 287
Score = 36 (17.7 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 75 LNPCPTDYQSSILTT 89
LNP P D S ++ T
Sbjct: 407 LNPLPIDLSSLMMPT 421
>UNIPROTKB|H3BV80 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1
ProteinModelPortal:H3BV80 SMR:H3BV80 Ensembl:ENST00000569598
Bgee:H3BV80 Uniprot:H3BV80
Length = 211
Score = 99 (39.9 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 19 KLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALE 72
+L D+I +FS YGK+ + +P + L KG+A+VEF +EA KAL+
Sbjct: 73 RLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 127
>UNIPROTKB|K7GKR9 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000035101 Uniprot:K7GKR9
Length = 196
Score = 98 (39.6 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 15 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
>GENEDB_PFALCIPARUM|PF11_0083 [details] [associations]
symbol:PF11_0083 "nucleic acid binding factor,
putative" species:5833 "Plasmodium falciparum" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006139 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014186 RefSeq:XP_001347758.2 ProteinModelPortal:Q8IIT2
EnsemblProtists:PF11_0083:mRNA GeneID:810634 KEGG:pfa:PF11_0083
EuPathDB:PlasmoDB:PF3D7_1107100 HOGENOM:HOG000282219
ProtClustDB:CLSZ2433037 Uniprot:Q8IIT2
Length = 588
Score = 106 (42.4 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAT 68
K+Y R+ +LP EA +E FSK+GK+ + + + S K KGF FV F +E
Sbjct: 223 KEYPRI-FATRLPFEASKKDLEKYFSKFGKIVDIYVSRNISNNKNKGFGFVSFEKQESMN 281
Query: 69 KALE 72
K L+
Sbjct: 282 KVLK 285
>UNIPROTKB|Q8IIT2 [details] [associations]
symbol:PF11_0083 "Nucleic acid binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005575
"cellular_component" evidence=ND] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0006139 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014186 RefSeq:XP_001347758.2
ProteinModelPortal:Q8IIT2 EnsemblProtists:PF11_0083:mRNA
GeneID:810634 KEGG:pfa:PF11_0083 EuPathDB:PlasmoDB:PF3D7_1107100
HOGENOM:HOG000282219 ProtClustDB:CLSZ2433037 Uniprot:Q8IIT2
Length = 588
Score = 106 (42.4 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 24/64 (37%), Positives = 35/64 (54%)
Query: 9 KKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAT 68
K+Y R+ +LP EA +E FSK+GK+ + + + S K KGF FV F +E
Sbjct: 223 KEYPRI-FATRLPFEASKKDLEKYFSKFGKIVDIYVSRNISNNKNKGFGFVSFEKQESMN 281
Query: 69 KALE 72
K L+
Sbjct: 282 KVLK 285
>UNIPROTKB|E9PFS2 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC018737 HGNC:HGNC:17838 IPI:IPI00908705
ProteinModelPortal:E9PFS2 SMR:E9PFS2 Ensembl:ENST00000409201
ArrayExpress:E9PFS2 Bgee:E9PFS2 Uniprot:E9PFS2
Length = 199
Score = 98 (39.6 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 14 VVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 67
VV LP + I S FS++G VT L + K TG KG+AFVEF +++ A
Sbjct: 46 VVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVA 99
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
L PE + I+S F+ +GK++ + K +TGK KG+ FV F K +A A+
Sbjct: 65 LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 116
>ZFIN|ZDB-GENE-050306-51 [details] [associations]
symbol:rbm8a "RNA binding motif protein 8A"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050306-51 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028
eggNOG:COG0724 GeneTree:ENSGT00550000074641 CTD:9939
HOGENOM:HOG000183826 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:BC090261 IPI:IPI00505312 RefSeq:NP_001013363.1
UniGene:Dr.76821 HSSP:Q9Y5S9 ProteinModelPortal:Q5D018 SMR:Q5D018
STRING:Q5D018 PRIDE:Q5D018 Ensembl:ENSDART00000018253 GeneID:503767
KEGG:dre:503767 InParanoid:Q5D018 NextBio:20866311 Bgee:Q5D018
Uniprot:Q5D018
Length = 174
Score = 96 (38.9 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 23 EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
EA + + F+++G++ + L + TG LKG+A VE+ T +EA A+E GLN
Sbjct: 83 EATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAME-GLN 135
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 108 (43.1 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 15 VLKEKLPPEAEHDYIESVFSKYGKVTYVSLPK-FKSTGKLKGFAFVEFSTKEEATKALE 72
+L +P +A+ I+ +FS +G++ V LPK TG +GF FV+F TK++A +A +
Sbjct: 834 ILVRNIPFQADKREIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQ 892
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 105 (42.0 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 3 ELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFS 62
+L E + + R+ + + P+ D I+SVF +G++ SL + +TGK KG+ F+E+
Sbjct: 181 QLAEEARAFNRIYVAS-VHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYD 239
Query: 63 TKEEATKAL 71
+ A A+
Sbjct: 240 KAQSAQDAV 248
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 96 (38.9 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 6 EN-NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTK 64
EN + +Y ++ + LP E ++ + S F ++G + +V++ + TG+ +G+ FV F
Sbjct: 45 ENVDTRYTKIYVGG-LPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDA 103
Query: 65 EEATKALELGLNPCP 79
E AT+A + NP P
Sbjct: 104 ESATRACQ---NPKP 115
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 98 (39.6 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 12 GRVVLK-EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
G LK + L D + VF KYG+V V +P+ + T + +GFAFV F K +A A
Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71
Query: 71 LE 72
++
Sbjct: 72 MD 73
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 102 (41.0 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP 79
LP D ++++F KYG + ++ + K TG+ +G AFV ++ +EEA +A+ N P
Sbjct: 218 LPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 277
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 98 (39.6 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 12 GRVVLK-EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
G LK + L D + VF KYG+V V +P+ + T + +GFAFV F K +A A
Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71
Query: 71 LE 72
++
Sbjct: 72 MD 73
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 98 (39.6 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 12 GRVVLK-EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
G LK + L D + VF KYG+V V +P+ + T + +GFAFV F K +A A
Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71
Query: 71 LE 72
++
Sbjct: 72 MD 73
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 98 (39.6 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 12 GRVVLK-EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
G LK + L D + VF KYG+V V +P+ + T + +GFAFV F K +A A
Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71
Query: 71 LE 72
++
Sbjct: 72 MD 73
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 98 (39.6 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 12 GRVVLK-EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
G LK + L D + VF KYG+V V +P+ + T + +GFAFV F K +A A
Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71
Query: 71 LE 72
++
Sbjct: 72 MD 73
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 98 (39.6 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 12 GRVVLK-EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
G LK + L D + VF KYG+V V +P+ + T + +GFAFV F K +A A
Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71
Query: 71 LE 72
++
Sbjct: 72 MD 73
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 98 (39.6 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 12 GRVVLK-EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
G LK + L D + VF KYG+V V +P+ + T + +GFAFV F K +A A
Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71
Query: 71 LE 72
++
Sbjct: 72 MD 73
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 98 (39.6 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 12 GRVVLK-EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
G LK + L D + VF KYG+V V +P+ + T + +GFAFV F K +A A
Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71
Query: 71 LE 72
++
Sbjct: 72 MD 73
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 98 (39.6 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 12 GRVVLK-EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
G LK + L D + VF KYG+V V +P+ + T + +GFAFV F K +A A
Sbjct: 12 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71
Query: 71 LE 72
++
Sbjct: 72 MD 73
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 15 VLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 67
V LP ++ + +FSKYGKV V++ K K T K KG AF+ F K+ A
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 100 (40.3 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
+ FSKYG+V + + TG+ +GFAFV F++ EEA+ A++L
Sbjct: 50 LREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 106 (42.4 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 3 ELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFS 62
++ + ++ GR+ ++ + EA + S+FS+YG + V + TGK KGF +V+F
Sbjct: 301 QIAQKIEETGRLFIRN-ISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFL 359
Query: 63 TKEEATKA 70
KE+AT+A
Sbjct: 360 KKEDATRA 367
>WB|WBGene00020354 [details] [associations]
symbol:T08B6.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG238057
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 EMBL:FO081718
PIR:T15076 RefSeq:NP_500666.2 ProteinModelPortal:O44530 SMR:O44530
STRING:O44530 EnsemblMetazoa:T08B6.5 GeneID:177260
KEGG:cel:CELE_T08B6.5 UCSC:T08B6.5 CTD:177260 WormBase:T08B6.5
InParanoid:O44530 OMA:ELETHFK NextBio:896018 Uniprot:O44530
Length = 177
Score = 95 (38.5 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 37/114 (32%), Positives = 48/114 (42%)
Query: 1 MAELVENNKKY-GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFV 59
MA E +K R V + ++ IE F+ GKV V++PK K TG K FAFV
Sbjct: 33 MAPTAEEQEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFV 92
Query: 60 EFSTKEEATKALELGLNPCPTDYQSSILTTTSRLSFGITPLGFESGGWWFKSSH 113
EF E AL L L T++ G T + + KSSH
Sbjct: 93 EFQKLESVQLALVLSGTMFRNRKIMVTLKRTNKPGMGRTATA-QKPAHFAKSSH 145
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 94 (38.1 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 23 EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
E + +E VFSKYG+V V + K + + + +GF FV F E+A A+ + +N
Sbjct: 16 ETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAM-MAMN 68
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 104 (41.7 bits), Expect = 0.00010, P = 0.00010
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 65
E+ + GR+ ++ LP + + +E +FSKYG ++ + P + T K KGFAF+ + E
Sbjct: 72 EDLSESGRLFVRN-LPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPE 130
Query: 66 EATKA 70
A KA
Sbjct: 131 HAVKA 135
Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 15 VLKEKLPPEAEHDYIESVFSKYGKVTYVSLPK-FKSTGKLKGFAFVEFSTKEEATKA 70
+L +P +A I +FS +G++ V LPK TG +GF FV+F TK++A KA
Sbjct: 497 ILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKA 553
>UNIPROTKB|F1LWM0 [details] [associations]
symbol:F1LWM0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR007087 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016585 IPI:IPI00557539 Ensembl:ENSRNOT00000040618
ArrayExpress:F1LWM0 Uniprot:F1LWM0
Length = 929
Score = 106 (42.4 bits), Expect = 0.00010, P = 0.00010
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTK 64
E +K +V+ LP A D I +G + V L + KS+G+ +GFAFVEFS
Sbjct: 122 EEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHL 181
Query: 65 EEATKALE 72
++AT+ +E
Sbjct: 182 QDATRWME 189
>UNIPROTKB|P98175 [details] [associations]
symbol:RBM10 "RNA-binding protein 10" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0034393 "positive regulation of
smooth muscle cell apoptotic process" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR007087 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016585
EMBL:CH471164 EMBL:AL513366 EMBL:D50912 EMBL:AK292758 EMBL:AL137421
EMBL:BC003089 EMBL:BC004181 EMBL:BC008733 EMBL:BC024153 EMBL:U35373
IPI:IPI00375731 IPI:IPI00549342 IPI:IPI00915253 IPI:IPI00916428
RefSeq:NP_001191395.1 RefSeq:NP_001191396.1 RefSeq:NP_005667.2
RefSeq:NP_690595.1 UniGene:Hs.401509 PDB:2LXI PDB:2M2B PDBsum:2LXI
PDBsum:2M2B ProteinModelPortal:P98175 SMR:P98175 IntAct:P98175
MINT:MINT-2864879 STRING:P98175 PhosphoSite:P98175 DMDM:218512116
PaxDb:P98175 PRIDE:P98175 DNASU:8241 Ensembl:ENST00000329236
Ensembl:ENST00000345781 Ensembl:ENST00000377604 GeneID:8241
KEGG:hsa:8241 UCSC:uc004dhf.3 UCSC:uc004dhg.3 UCSC:uc004dhh.3
UCSC:uc010nhq.3 CTD:8241 GeneCards:GC0XP047004 HGNC:HGNC:9896
HPA:HPA034972 MIM:300080 MIM:311900 neXtProt:NX_P98175
Orphanet:2886 PharmGKB:PA34259 eggNOG:NOG290849 HOVERGEN:HBG000318
InParanoid:P98175 KO:K13094 OMA:NQHSLNI OrthoDB:EOG4DZ1TN
PhylomeDB:P98175 ChiTaRS:RBM10 GenomeRNAi:8241 NextBio:30996
Bgee:P98175 CleanEx:HS_RBM10 Genevestigator:P98175
GermOnline:ENSG00000182872 Uniprot:P98175
Length = 930
Score = 106 (42.4 bits), Expect = 0.00010, P = 0.00010
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTK 64
E +K +V+ LP A D I +G + V L + KS+G+ +GFAFVEFS
Sbjct: 122 EEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHL 181
Query: 65 EEATKALE 72
++AT+ +E
Sbjct: 182 QDATRWME 189
>MGI|MGI:2384310 [details] [associations]
symbol:Rbm10 "RNA binding motif protein 10" species:10090
"Mus musculus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IGI;IDA] [GO:0034391 "regulation of smooth muscle cell
apoptotic process" evidence=IGI] [GO:0034393 "positive regulation
of smooth muscle cell apoptotic process" evidence=IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR007087 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00641 Pfam:PF01585 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174 PROSITE:PS50199
SMART:SM00355 SMART:SM00360 SMART:SM00443 SMART:SM00547
MGI:MGI:2384310 GO:GO:0008285 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000122
GeneTree:ENSGT00510000046476 GO:GO:0034393 GO:GO:0016585
GO:GO:0070935 HSSP:P08199 CTD:8241 eggNOG:NOG290849
HOVERGEN:HBG000318 KO:K13094 OrthoDB:EOG4DZ1TN EMBL:AK122208
EMBL:AK089105 EMBL:AK145991 EMBL:AK153736 EMBL:AK167666
EMBL:AL672073 EMBL:AL807240 EMBL:BC004674 IPI:IPI00116031
IPI:IPI00468834 IPI:IPI00776254 RefSeq:NP_001161247.1
RefSeq:NP_001161248.1 RefSeq:NP_663602.1 UniGene:Mm.279194
UniGene:Mm.383632 UniGene:Mm.475412 ProteinModelPortal:Q99KG3
SMR:Q99KG3 STRING:Q99KG3 PhosphoSite:Q99KG3 PaxDb:Q99KG3
PRIDE:Q99KG3 Ensembl:ENSMUST00000064911 Ensembl:ENSMUST00000082089
Ensembl:ENSMUST00000084383 Ensembl:ENSMUST00000115374
Ensembl:ENSMUST00000115375 Ensembl:ENSMUST00000177738 GeneID:236732
KEGG:mmu:236732 UCSC:uc009stf.2 UCSC:uc009sth.2 UCSC:uc009sti.2
HOGENOM:HOG000046285 InParanoid:Q99KG3 NextBio:383047 Bgee:Q99KG3
Genevestigator:Q99KG3 Uniprot:Q99KG3
Length = 930
Score = 106 (42.4 bits), Expect = 0.00010, P = 0.00010
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTK 64
E +K +V+ LP A D I +G + V L + KS+G+ +GFAFVEFS
Sbjct: 122 EEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHL 181
Query: 65 EEATKALE 72
++AT+ +E
Sbjct: 182 QDATRWME 189
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 87 (35.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L P+ + I+ F +G++ + LP T + +GF F+ ++ +E K LE
Sbjct: 158 LSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 210
Score = 32 (16.3 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 74 GLNPCPTDYQSSILTTTSRLSFG 96
G P TDY + +T + S G
Sbjct: 305 GYGPGYTDYSAGQQSTYGKASRG 327
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 99 (39.9 bits), Expect = 0.00010, P = 0.00010
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L PEA + I F ++G++ + LP T K +GF F+ F +E K LE
Sbjct: 155 LNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLE 207
>CGD|CAL0005693 [details] [associations]
symbol:orf19.444 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 67
N K+ R+ + L P+ + ++ FSKY ++ V +P + T K KGF FV F E+
Sbjct: 52 NPKHFRLFVGN-LGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDY 110
Query: 68 TKALE 72
A +
Sbjct: 111 LHAFQ 115
>DICTYBASE|DDB_G0288291 [details] [associations]
symbol:DDB_G0288291 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0288291 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000109 eggNOG:COG0724
RefSeq:XP_636795.1 ProteinModelPortal:Q54J52
EnsemblProtists:DDB0187876 GeneID:8626552 KEGG:ddi:DDB_G0288291
InParanoid:Q54J52 OMA:NMHESEI ProtClustDB:CLSZ2429905
Uniprot:Q54J52
Length = 123
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 67
NKK V+ + + D + + F +G + V LP T KLKGF F++F E+A
Sbjct: 12 NKK--NVLYVGGISDDVTIDILRAAFIPFGNINDVILPMDHKTQKLKGFGFIDFELPEDA 69
Query: 68 TKALE 72
AL+
Sbjct: 70 ADALD 74
>UNIPROTKB|Q5A297 [details] [associations]
symbol:CaO19.444 "Potential RNA binding protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0005693 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000078
EMBL:AACQ01000077 eggNOG:NOG306795 RefSeq:XP_715879.1
RefSeq:XP_715929.1 ProteinModelPortal:Q5A297 GeneID:3642415
GeneID:3642464 KEGG:cal:CaO19.444 KEGG:cal:CaO19.8074
HOGENOM:HOG000093291 Uniprot:Q5A297
Length = 145
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 8 NKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 67
N K+ R+ + L P+ + ++ FSKY ++ V +P + T K KGF FV F E+
Sbjct: 52 NPKHFRLFVGN-LGPDGNDELLKEAFSKYPSMSQVHVPIDRKTSKNKGFGFVAFGKSEDY 110
Query: 68 TKALE 72
A +
Sbjct: 111 LHAFQ 115
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 106 (42.4 bits), Expect = 0.00010, P = 0.00010
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 15 VLKEKLPPEAEHDYIESVFSKYGKVTYVSLPK-FKSTGKLKGFAFVEFSTKEEATKA 70
+L +P +A I +FS +G++ V LPK TG +GF FV+F TK++A KA
Sbjct: 826 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 882
>ZFIN|ZDB-GENE-030131-5228 [details] [associations]
symbol:rnps1 "RNA binding protein S1, serine-rich
domain" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5228 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 GeneTree:ENSGT00700000104336 CTD:10921
eggNOG:NOG331533 HOGENOM:HOG000044325 KO:K14325 EMBL:BC057251
EMBL:BC065953 IPI:IPI00490683 RefSeq:NP_956055.1 UniGene:Dr.75879
ProteinModelPortal:Q6PG31 STRING:Q6PG31 Ensembl:ENSDART00000128731
GeneID:327020 KEGG:dre:327020 InParanoid:Q6PG31 NextBio:20809844
Bgee:Q6PG31 Uniprot:Q6PG31
Length = 283
Score = 99 (39.9 bits), Expect = 0.00011, P = 0.00011
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 19 KLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALELGLNP 77
+L D+I+ +F+ YGK+ + +P + + KG+A+VE+ + E+A KAL+ ++
Sbjct: 143 RLTRNVTKDHIQEIFATYGKIKMIDMPSDRLHPNVSKGYAYVEYESPEDAQKALK-HMDG 201
Query: 78 CPTDYQSSILTTTSRLSFGITP 99
D Q +T T+ L+ I P
Sbjct: 202 GQIDGQE--ITATAILAQRIRP 221
>UNIPROTKB|H3BMM9 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1 Ensembl:ENST00000561518
Bgee:H3BMM9 Uniprot:H3BMM9
Length = 284
Score = 99 (39.9 bits), Expect = 0.00011, P = 0.00011
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 19 KLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALE 72
+L D+I +FS YGK+ + +P + L KG+A+VEF +EA KAL+
Sbjct: 167 RLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221
>UNIPROTKB|F1MFZ9 [details] [associations]
symbol:RBM10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0034393 "positive regulation of smooth muscle
cell apoptotic process" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000467 InterPro:IPR000504
InterPro:IPR007087 InterPro:IPR012677 InterPro:IPR015880
Pfam:PF01585 PROSITE:PS50102 PROSITE:PS50157 PROSITE:PS50174
SMART:SM00355 SMART:SM00360 SMART:SM00443 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00510000046476 GO:GO:0016585 OMA:NQHSLNI
EMBL:DAAA02073014 EMBL:DAAA02073009 EMBL:DAAA02073010
EMBL:DAAA02073011 EMBL:DAAA02073012 EMBL:DAAA02073013
IPI:IPI00999955 Ensembl:ENSBTAT00000003758 Uniprot:F1MFZ9
Length = 996
Score = 106 (42.4 bits), Expect = 0.00011, P = 0.00011
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTK 64
E +K +V+ LP A D I +G + V L + KS+G+ +GFAFVEFS
Sbjct: 187 EEEEKASNIVMLRMLPQAATEDDIRGQLQSHGIQAREVRLMRNKSSGQSRGFAFVEFSHL 246
Query: 65 EEATKALE 72
++AT+ +E
Sbjct: 247 QDATRWME 254
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 95 (38.5 bits), Expect = 0.00011, P = 0.00011
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 27 DYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
D + +F +GK+ + L K TG+ KG+ F+ FS E A +ALE
Sbjct: 27 DMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 72
>FB|FBgn0033378 [details] [associations]
symbol:tsu "tsunagi" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0007310 "oocyte
dorsal/ventral axis specification" evidence=IMP] [GO:0007314
"oocyte anterior/posterior axis specification" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=IMP] [GO:0007312 "oocyte
nucleus migration involved in oocyte dorsal/ventral axis
specification" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0007317 "regulation of pole plasm oskar mRNA localization"
evidence=IMP;IPI] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=TAS]
[GO:0046595 "establishment of pole plasm mRNA localization"
evidence=TAS] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IPI] [GO:0007173
"epidermal growth factor receptor signaling pathway" evidence=IMP]
InterPro:IPR000504 InterPro:IPR008111 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102 SMART:SM00360
EMBL:AE013599 GO:GO:0005737 GO:GO:0007173 GO:GO:0000226
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006406
GO:GO:0000398 GO:GO:0071013 GO:GO:0007312 eggNOG:COG0724
GO:GO:0045451 GO:GO:0035145 GO:GO:0007317
GeneTree:ENSGT00550000074641 PDB:1HL6 PDB:1OO0 PDB:1RK8 PDB:2X1G
PDBsum:1HL6 PDBsum:1OO0 PDBsum:1RK8 PDBsum:2X1G KO:K12876
OMA:WILFVTS EMBL:AF173550 EMBL:AY071005 RefSeq:NP_610454.2
UniGene:Dm.19884 ProteinModelPortal:Q9V535 SMR:Q9V535
DIP:DIP-24075N IntAct:Q9V535 MINT:MINT-816263 STRING:Q9V535
PaxDb:Q9V535 PRIDE:Q9V535 EnsemblMetazoa:FBtr0088567 GeneID:35924
KEGG:dme:Dmel_CG8781 UCSC:CG8781-RA CTD:110124 FlyBase:FBgn0033378
InParanoid:Q9V535 OrthoDB:EOG4N02X6 PhylomeDB:Q9V535
EvolutionaryTrace:Q9V535 GenomeRNAi:35924 NextBio:795852
Bgee:Q9V535 GermOnline:CG8781 GO:GO:0046595 Uniprot:Q9V535
Length = 165
Score = 93 (37.8 bits), Expect = 0.00012, P = 0.00012
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
G ++ + EA+ D I+ F YG++ + L + TG KG+A VE+ T ++A A
Sbjct: 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 131
Query: 72 ELGLN 76
E LN
Sbjct: 132 E-ALN 135
>RGD|1587653 [details] [associations]
symbol:LOC688526 "similar to ribonucleic acid binding protein
S1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1587653 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GeneTree:ENSGT00700000104336 IPI:IPI00560964
Ensembl:ENSRNOT00000037439 Uniprot:F1M6U2
Length = 301
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 18 EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALELGLN 76
E+L D+I +FS YGK+ + +P + L KG+ +VEF +EA K L+ +N
Sbjct: 162 ERLTRNVTKDHIMEIFSTYGKIKMIDMPVERILPHLSKGYVYVEFENPDEAEKTLK-HMN 220
Query: 77 PCPTDYQSSILTTTSRLSFGITPL 100
D Q +T T+ L+ PL
Sbjct: 221 GGQIDGQE--ITATAVLAPWPRPL 242
>UNIPROTKB|H3BTC0 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1 Ensembl:ENST00000565870
Bgee:H3BTC0 Uniprot:H3BTC0
Length = 302
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 19 KLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALE 72
+L D+I +FS YGK+ + +P + L KG+A+VEF +EA KAL+
Sbjct: 167 RLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 96 (38.9 bits), Expect = 0.00012, P = 0.00012
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L PEA + I F ++G++ + LP T K +GF F+ F ++ K LE
Sbjct: 91 LNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 93 (37.8 bits), Expect = 0.00012, P = 0.00012
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 23 EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
E D +E F+KYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 15 ETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAM-MAMN 67
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 93 (37.8 bits), Expect = 0.00012, P = 0.00012
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 23 EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+ + +E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 15 DTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAM-MAMN 67
>UNIPROTKB|A6QR16 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9913 "Bos taurus" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003730 GeneTree:ENSGT00700000104336 EMBL:BC150075
IPI:IPI00867269 RefSeq:NP_001095311.1 UniGene:Bt.20502
ProteinModelPortal:A6QR16 STRING:A6QR16 Ensembl:ENSBTAT00000013151
GeneID:504506 KEGG:bta:504506 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 InParanoid:A6QR16 KO:K14325 OMA:TKRKDRT
OrthoDB:EOG44J2KM NextBio:20866696 Uniprot:A6QR16
Length = 305
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 19 KLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALE 72
+L D+I +FS YGK+ + +P + L KG+A+VEF +EA KAL+
Sbjct: 167 RLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221
>UNIPROTKB|F6XEW2 [details] [associations]
symbol:RNPS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 CTD:10921 KO:K14325 OMA:TKRKDRT
Ensembl:ENSCAFT00000030839 EMBL:AAEX03004619 RefSeq:XP_537005.1
ProteinModelPortal:F6XEW2 GeneID:479880 KEGG:cfa:479880
Uniprot:F6XEW2
Length = 305
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 19 KLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALE 72
+L D+I +FS YGK+ + +P + L KG+A+VEF +EA KAL+
Sbjct: 167 RLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221
>UNIPROTKB|Q15287 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0035145
"exon-exon junction complex" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP;IDA;TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471112
TCDB:3.A.18.1.1 GO:GO:0003730 GO:GO:0006406 GO:GO:0000398
Reactome:REACT_1788 EMBL:AC009065 GO:GO:0006369 GO:GO:0031124
Reactome:REACT_78 CTD:10921 eggNOG:NOG331533 KO:K14325 OMA:TKRKDRT
OrthoDB:EOG44J2KM EMBL:L37368 EMBL:AF015608 EMBL:AF274003
EMBL:AK289955 EMBL:AK293343 EMBL:AK303100 EMBL:AK316132
EMBL:BC001659 EMBL:BC001838 EMBL:BC108316 EMBL:AF247662
IPI:IPI00033561 IPI:IPI00479871 IPI:IPI00783594 PIR:JC4525
RefSeq:NP_006702.1 RefSeq:NP_542161.1 UniGene:Hs.355643
UniGene:Hs.507343 UniGene:Hs.733012 PDB:4A8X PDBsum:4A8X
ProteinModelPortal:Q15287 SMR:Q15287 DIP:DIP-32943N IntAct:Q15287
MINT:MINT-1474621 STRING:Q15287 PhosphoSite:Q15287 DMDM:74754492
PaxDb:Q15287 PRIDE:Q15287 DNASU:10921 Ensembl:ENST00000301730
Ensembl:ENST00000320225 Ensembl:ENST00000397086
Ensembl:ENST00000565678 Ensembl:ENST00000566458
Ensembl:ENST00000568631 GeneID:10921 KEGG:hsa:10921 UCSC:uc002cpt.3
UCSC:uc002cpx.3 GeneCards:GC16M002303 H-InvDB:HIX0031789
HGNC:HGNC:10080 HPA:HPA044014 MIM:606447 neXtProt:NX_Q15287
PharmGKB:PA34453 HOVERGEN:HBG053138 InParanoid:Q15287 ChiTaRS:RNPS1
GenomeRNAi:10921 NextBio:41487 ArrayExpress:Q15287 Bgee:Q15287
CleanEx:HS_RNPS1 Genevestigator:Q15287 GermOnline:ENSG00000205937
Uniprot:Q15287
Length = 305
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 19 KLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALE 72
+L D+I +FS YGK+ + +P + L KG+A+VEF +EA KAL+
Sbjct: 167 RLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221
>MGI|MGI:97960 [details] [associations]
symbol:Rnps1 "ribonucleic acid binding protein S1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:97960 GO:GO:0005737
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00700000104336 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 KO:K14325 OMA:TKRKDRT OrthoDB:EOG44J2KM
HOVERGEN:HBG053138 ChiTaRS:RNPS1 EMBL:AK146443 EMBL:AK151150
EMBL:AK165905 EMBL:BC002061 EMBL:BC008089 IPI:IPI00462424
IPI:IPI00656166 RefSeq:NP_001073596.1 RefSeq:NP_001073597.1
RefSeq:NP_033096.2 UniGene:Mm.1951 ProteinModelPortal:Q99M28
SMR:Q99M28 STRING:Q99M28 PhosphoSite:Q99M28 PaxDb:Q99M28
PRIDE:Q99M28 Ensembl:ENSMUST00000088512 Ensembl:ENSMUST00000115371
Ensembl:ENSMUST00000163717 GeneID:19826 KEGG:mmu:19826
UCSC:uc008avs.1 UCSC:uc008avu.1 NextBio:297301 Bgee:Q99M28
CleanEx:MM_RNPS1 Genevestigator:Q99M28
GermOnline:ENSMUSG00000034681 Uniprot:Q99M28
Length = 305
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 19 KLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALE 72
+L D+I +FS YGK+ + +P + L KG+A+VEF +EA KAL+
Sbjct: 167 RLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221
>RGD|1307522 [details] [associations]
symbol:Rnps1 "ribonucleic acid binding protein S1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307522
GO:GO:0005737 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00700000104336 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 KO:K14325 OrthoDB:EOG44J2KM HOVERGEN:HBG053138
EMBL:BC079014 IPI:IPI00464732 RefSeq:NP_001011890.1 UniGene:Rn.7235
ProteinModelPortal:Q6AYK1 STRING:Q6AYK1 Ensembl:ENSRNOT00000010915
GeneID:287113 KEGG:rno:287113 UCSC:RGD:1307522 NextBio:625524
ArrayExpress:Q6AYK1 Genevestigator:Q6AYK1
GermOnline:ENSRNOG00000008703 Uniprot:Q6AYK1
Length = 305
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 19 KLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALE 72
+L D+I +FS YGK+ + +P + L KG+A+VEF +EA KAL+
Sbjct: 167 RLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221
>UNIPROTKB|Q6AYK1 [details] [associations]
symbol:Rnps1 "RNA-binding protein with serine-rich domain
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307522
GO:GO:0005737 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00700000104336 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 KO:K14325 OrthoDB:EOG44J2KM HOVERGEN:HBG053138
EMBL:BC079014 IPI:IPI00464732 RefSeq:NP_001011890.1 UniGene:Rn.7235
ProteinModelPortal:Q6AYK1 STRING:Q6AYK1 Ensembl:ENSRNOT00000010915
GeneID:287113 KEGG:rno:287113 UCSC:RGD:1307522 NextBio:625524
ArrayExpress:Q6AYK1 Genevestigator:Q6AYK1
GermOnline:ENSRNOG00000008703 Uniprot:Q6AYK1
Length = 305
Score = 99 (39.9 bits), Expect = 0.00012, P = 0.00012
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 19 KLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALE 72
+L D+I +FS YGK+ + +P + L KG+A+VEF +EA KAL+
Sbjct: 167 RLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 221
>UNIPROTKB|E1BTK3 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
NextBio:20821039 Uniprot:E1BTK3
Length = 216
Score = 96 (38.9 bits), Expect = 0.00013, P = 0.00013
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 15 VLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 67
V LP ++ + +FSKYGKV V++ K K T K KG AF+ F KE A
Sbjct: 12 VYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESA 64
>UNIPROTKB|E1BV45 [details] [associations]
symbol:RNPS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GeneTree:ENSGT00700000104336 EMBL:AADN02049470
IPI:IPI00602926 ProteinModelPortal:E1BV45
Ensembl:ENSGALT00000015109 OMA:LNPPKCT Uniprot:E1BV45
Length = 243
Score = 97 (39.2 bits), Expect = 0.00013, P = 0.00013
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 19 KLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALE 72
+L D+I +FS YGK+ + +P + L KG+A+VEF ++A KAL+
Sbjct: 167 RLTRNVTKDHIMEIFSTYGKIKMIDMPVDRLNPHLSKGYAYVEFENPDDAEKALK 221
>RGD|1309982 [details] [associations]
symbol:Hnrnpc "heterogeneous nuclear ribonucleoprotein C
(C1/C2)" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=ISO] [GO:0045120 "pronucleus" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309982 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:X16933 IPI:IPI00213609
PIR:S09017 UniGene:Rn.101929 ProteinModelPortal:P17132 SMR:P17132
STRING:P17132 PRIDE:P17132 UCSC:RGD:1309982 ArrayExpress:P17132
Genevestigator:P17132 GermOnline:ENSRNOG00000002292 Uniprot:P17132
Length = 158
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE-----LG 74
L P+ + I F +G+V + LP T K +GF F+ F +E K +E +G
Sbjct: 41 LSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG 100
Query: 75 LNPC 78
L+ C
Sbjct: 101 LSKC 104
>UNIPROTKB|E2R2P7 [details] [associations]
symbol:RNPS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R2P7 Ensembl:ENSCAFT00000030839 Uniprot:E2R2P7
Length = 320
Score = 99 (39.9 bits), Expect = 0.00013, P = 0.00013
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 19 KLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALE 72
+L D+I +FS YGK+ + +P + L KG+A+VEF +EA KAL+
Sbjct: 166 RLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 220
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
AEL K++ V +K E + + ++ +FS++GK V + + S GK KGF FV +
Sbjct: 181 AELGAKAKEFTNVYIKN-FGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSY 238
Query: 62 STKEEATKALE 72
E+A KA+E
Sbjct: 239 EKHEDANKAVE 249
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
AEL K++ V +K E + + ++ +FS++GK V + + S GK KGF FV +
Sbjct: 181 AELGAKAKEFTNVYIKN-FGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSY 238
Query: 62 STKEEATKALE 72
E+A KA+E
Sbjct: 239 EKHEDANKAVE 249
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 103 (41.3 bits), Expect = 0.00014, P = 0.00014
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
AEL K++ V +K E + + ++ +FS++GK V + + S GK KGF FV +
Sbjct: 181 AELGAKAKEFTNVYIKN-FGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSY 238
Query: 62 STKEEATKALE 72
E+A KA+E
Sbjct: 239 EKHEDANKAVE 249
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 98 (39.6 bits), Expect = 0.00015, P = 0.00015
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 17 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 67
>UNIPROTKB|Q9BYG3 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006461 "protein complex assembly" evidence=NAS] [GO:0009303
"rRNA transcription" evidence=NAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016072 "rRNA metabolic process" evidence=NAS]
[GO:0010923 "negative regulation of phosphatase activity"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AB044971 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0006461 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471103 GO:GO:0000794
GO:GO:0009303 GO:GO:0010923 GO:GO:0016072 PDB:2AFF PDBsum:2AFF
CTD:84365 eggNOG:NOG244773 HOGENOM:HOG000242795 HOVERGEN:HBG057796
KO:K14838 OMA:QVRKRIT OrthoDB:EOG4MKNGX InterPro:IPR021043
Pfam:PF12196 EMBL:AK291903 EMBL:AC018737 EMBL:BC012457
EMBL:BC022990 EMBL:BC024238 IPI:IPI00154590 RefSeq:NP_115766.3
UniGene:Hs.367842 ProteinModelPortal:Q9BYG3 SMR:Q9BYG3
DIP:DIP-28134N IntAct:Q9BYG3 MINT:MINT-1031770 STRING:Q9BYG3
PhosphoSite:Q9BYG3 DMDM:71151919 SWISS-2DPAGE:Q9BYG3 PaxDb:Q9BYG3
PeptideAtlas:Q9BYG3 PRIDE:Q9BYG3 DNASU:84365
Ensembl:ENST00000285814 GeneID:84365 KEGG:hsa:84365 UCSC:uc002tnk.3
GeneCards:GC02M122484 HGNC:HGNC:17838 HPA:CAB015382 MIM:611970
neXtProt:NX_Q9BYG3 PharmGKB:PA38470 InParanoid:Q9BYG3
PhylomeDB:Q9BYG3 EvolutionaryTrace:Q9BYG3 GenomeRNAi:84365
NextBio:74141 ArrayExpress:Q9BYG3 Bgee:Q9BYG3 CleanEx:HS_MKI67IP
Genevestigator:Q9BYG3 GermOnline:ENSG00000155438 Uniprot:Q9BYG3
Length = 293
Score = 98 (39.6 bits), Expect = 0.00015, P = 0.00015
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 14 VVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 67
VV LP + I S FS++G VT L + K TG KG+AFVEF +++ A
Sbjct: 46 VVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVA 99
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 98 (39.6 bits), Expect = 0.00015, P = 0.00015
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 15 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 103 (41.3 bits), Expect = 0.00015, P = 0.00015
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
AEL K++ V +K E + + ++ +FS++GK V + + S GK KGF FV +
Sbjct: 221 AELGAKAKEFTNVYIKN-FGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSY 278
Query: 62 STKEEATKALE 72
E+A KA+E
Sbjct: 279 EKHEDANKAVE 289
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 101 (40.6 bits), Expect = 0.00015, P = 0.00015
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 9 KKYGRVVLKEK-------LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
KKYG V E LP +A+ D + + FS+ +V + LP + +G+ KGF +V F
Sbjct: 331 KKYGDTVSPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTF 390
Query: 62 STKEEATKALE 72
++ E+A A E
Sbjct: 391 NSVEDAKSAFE 401
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 98 (39.6 bits), Expect = 0.00016, P = 0.00016
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 15 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 95 (38.5 bits), Expect = 0.00016, P = 0.00016
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 27 DYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
D + +F +GK+ + L K TG+ KG+ F+ FS E A +ALE
Sbjct: 52 DMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 97
>FB|FBgn0036018 [details] [associations]
symbol:CG3335 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0004386 eggNOG:COG0724 HSSP:Q61474 EMBL:AY113652
ProteinModelPortal:Q8MYR4 SMR:Q8MYR4 STRING:Q8MYR4 PaxDb:Q8MYR4
PRIDE:Q8MYR4 FlyBase:FBgn0036018 HOGENOM:HOG000132447
InParanoid:Q8MYR4 OrthoDB:EOG4M63ZP ArrayExpress:Q8MYR4 Bgee:Q8MYR4
Uniprot:Q8MYR4
Length = 918
Score = 104 (41.7 bits), Expect = 0.00016, P = 0.00016
Identities = 20/71 (28%), Positives = 41/71 (57%)
Query: 4 LVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGK--LKGFAFVEF 61
L K+ G +L +P +A++ + +F +G++ + +PK +TG+ +GF FV++
Sbjct: 776 LASQKKQTGTKILVRNIPFQAQYREVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFVDY 835
Query: 62 STKEEATKALE 72
+K EA +A +
Sbjct: 836 MSKAEAKRAFD 846
Score = 103 (41.3 bits), Expect = 0.00021, P = 0.00021
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R+++K+ LP D + +F G +T + L K+ GK + F FV +ST+EEA A+
Sbjct: 3 RIIVKQ-LPKHITEDKLRQIFGAQGTITDLQL-KYTPDGKFRQFCFVGYSTEEEAQSAIR 60
Query: 73 LGLNPC 78
N C
Sbjct: 61 HFDNTC 66
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 98 (39.6 bits), Expect = 0.00017, P = 0.00017
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE-----LG 74
L P+ + I F YG+V + LP T K +GF F+ F +E K +E +G
Sbjct: 146 LSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEKKYHNIG 205
Query: 75 LNPC 78
L+ C
Sbjct: 206 LSKC 209
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAT 68
LP +A +++ +F+++G+V V L K K TGK +GF FV + + T
Sbjct: 71 LPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQAQT 119
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAT 68
LP +A +++ +F+++G+V V L K K TGK +GF FV + + T
Sbjct: 71 LPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQAQT 119
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 99 (39.9 bits), Expect = 0.00017, P = 0.00017
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP 79
L E +E+VF KYG+V V L K + T K +GFAFV F + +A A LN
Sbjct: 15 LNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR-ELNGKA 73
Query: 80 TDYQSSILTTTSRLSFGITP 99
D + + ++ SF TP
Sbjct: 74 LDGKPIKVEQATKPSFS-TP 92
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 102 (41.0 bits), Expect = 0.00017, P = 0.00017
Identities = 25/70 (35%), Positives = 37/70 (52%)
Query: 7 NNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 66
N K+ V +K L D +++ F +YGK+T + K GK KGF FV F ++
Sbjct: 210 NKTKFTNVYVKN-LAESTTDDDLKNAFGEYGKITSAVVMK-DGEGKSKGFGFVNFENADD 267
Query: 67 ATKALELGLN 76
A +A+E LN
Sbjct: 268 AARAVE-SLN 276
>UNIPROTKB|F1NEC5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00586587
Ensembl:ENSGALT00000037991 Uniprot:F1NEC5
Length = 945
Score = 104 (41.7 bits), Expect = 0.00017, P = 0.00017
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 65
E+ + GR+ ++ LP + + +E +FSKYG ++ + P + T K KGFAF+ + E
Sbjct: 396 EDLSESGRLFVRN-LPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPE 454
Query: 66 EATKA 70
A KA
Sbjct: 455 HAVKA 459
Score = 103 (41.3 bits), Expect = 0.00022, P = 0.00022
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 15 VLKEKLPPEAEHDYIESVFSKYGKVTYVSLPK-FKSTGKLKGFAFVEFSTKEEATKA 70
+L +P +A I +FS +G++ V LPK TG +GF FV+F TK++A KA
Sbjct: 821 ILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKA 877
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 104 (41.7 bits), Expect = 0.00017, P = 0.00017
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 15 VLKEKLPPEAEHDYIESVFSKYGKVTYVSLPK-FKSTGKLKGFAFVEFSTKEEATKA 70
+L +P +A+ I +FS +G++ V LPK TG +GF FV+F TK++A +A
Sbjct: 839 ILVRNIPFQADSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRA 895
Score = 100 (40.3 bits), Expect = 0.00046, P = 0.00046
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
GR+ ++ LP + + +E +FSKYG ++ + P T K KGFAFV F E A KA
Sbjct: 403 GRLFVRN-LPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 460
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 101 (40.6 bits), Expect = 0.00018, P = 0.00018
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
AEL K++ V +K E + + ++ +FS++GK V + + GK KGF FV +
Sbjct: 83 AELGAKAKEFTNVYIKN-FGEEVDDESLKELFSQFGKTLSVKVMR-DPNGKSKGFGFVSY 140
Query: 62 STKEEATKALE 72
E+A KA+E
Sbjct: 141 EKHEDANKAVE 151
>ASPGD|ASPL0000001581 [details] [associations]
symbol:AN10765 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016282 "eukaryotic 43S preinitiation complex"
evidence=IEA] [GO:0071541 "eukaryotic translation initiation factor
3 complex, eIF3m" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0071540 "eukaryotic translation initiation factor 3 complex,
eIF3e" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001301
GO:GO:0003743 HSSP:O75821 OMA:SNLSEAM HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353 EMBL:AACD01000103
ProteinModelPortal:C8V330 STRING:Q5B0B3
EnsemblFungi:CADANIAT00007002 Uniprot:C8V330
Length = 289
Score = 97 (39.2 bits), Expect = 0.00018, P = 0.00018
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 24 AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
AE + +F ++G+VT V L + + T + KGFAF+ F+ + +A +A +
Sbjct: 220 AEEQELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDAARACD 268
>UNIPROTKB|K7ENA8 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC020931 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HGNC:HGNC:3274
Ensembl:ENST00000589454 Uniprot:K7ENA8
Length = 289
Score = 97 (39.2 bits), Expect = 0.00018, P = 0.00018
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
++ +F +G ++ + L K K+TG+ KGFAF+ F +E+A +A+
Sbjct: 247 LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 289
>POMBASE|SPBP22H7.02c [details] [associations]
symbol:SPBP22H7.02c "RNA-binding protein Mrd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0030686 "90S preribosome"
evidence=ISO] [GO:0034462 "small-subunit processome assembly"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBP22H7.02c GO:GO:0005730
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 EMBL:AB004535 GO:GO:0030686
GO:GO:0006364 eggNOG:COG0724 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 EMBL:AB028003
RefSeq:NP_595599.1 ProteinModelPortal:O13620 STRING:O13620
PRIDE:O13620 EnsemblFungi:SPBP22H7.02c.1 GeneID:2541303
KEGG:spo:SPBP22H7.02c OMA:VFREKNV NextBio:20802413 Uniprot:O13620
Length = 833
Score = 103 (41.3 bits), Expect = 0.00019, P = 0.00019
Identities = 24/66 (36%), Positives = 37/66 (56%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 65
+++K G +L + LP EA ++S+ YG++ V +PK K +GFAF EF T
Sbjct: 714 DSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPK-KFDRSARGFAFAEFVTAR 772
Query: 66 EATKAL 71
EA A+
Sbjct: 773 EAANAM 778
>ZFIN|ZDB-GENE-040426-1076 [details] [associations]
symbol:eif3g "eukaryotic translation initiation
factor 3, subunit G" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;ISS] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1076 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
HSSP:O75821 GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:AY648835 EMBL:BC049046 EMBL:BC153489 IPI:IPI00500209
RefSeq:NP_957293.1 UniGene:Dr.161 ProteinModelPortal:Q6DRC4
SMR:Q6DRC4 STRING:Q6DRC4 PRIDE:Q6DRC4 Ensembl:ENSDART00000018071
Ensembl:ENSDART00000127487 GeneID:393974 KEGG:dre:393974
InParanoid:Q7ZUH3 OMA:NSEFDAP NextBio:20814945 Bgee:Q6DRC4
Uniprot:Q6DRC4
Length = 293
Score = 97 (39.2 bits), Expect = 0.00019, P = 0.00019
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
++ +F +G ++ + L K K+TG+ KGFAF+ F +E+A +A+
Sbjct: 228 LQELFRPFGSISRIYLAKDKNTGQSKGFAFISFHRREDAARAI 270
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 96 (38.9 bits), Expect = 0.00020, P = 0.00020
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L PEA + I F ++G++ + LP T K +GF F+ F ++ K LE
Sbjct: 91 LNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 103 (41.3 bits), Expect = 0.00020, P = 0.00020
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
GR+ L+ LP + D ++ +F KYG+V+ V + K TG KGFA VEF E A A
Sbjct: 279 GRLFLRN-LPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAA 336
Score = 99 (39.9 bits), Expect = 0.00053, P = 0.00053
Identities = 29/84 (34%), Positives = 41/84 (48%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R+++K LP + F KYG+++ SL K+ GK +GFAFV F + A+ AL
Sbjct: 4 RLIVKN-LPSTCTEQQLRKFFEKYGQISDASL-KYTKEGKFRGFAFVGFLDEGSASNALA 61
Query: 73 LGLNPCPTDYQSSILTTTSRLSFG 96
N T + S LT FG
Sbjct: 62 KS-NQ--TFFNSKKLTVEECRPFG 82
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 101 (40.6 bits), Expect = 0.00020, P = 0.00020
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
AEL K++ V +K E + + + +FS++GK V + + +GK KGF FV +
Sbjct: 110 AELGAKAKEFTNVYIKN-FGEEVDDENLRELFSQFGKTLSVKVMR-DCSGKSKGFGFVSY 167
Query: 62 STKEEATKALE 72
E+A KA+E
Sbjct: 168 EKHEDANKAVE 178
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 93 (37.8 bits), Expect = 0.00020, P = 0.00020
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 24 AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
A D +E F+ G V V++P + TG KGFA++EFS +E A+ L
Sbjct: 77 ATADELEMYFNSCGHVNRVTIPYNRFTGHPKGFAYIEFSDRESVRTAMAL 126
>UNIPROTKB|Q641B2 [details] [associations]
symbol:eif3g-b "Eukaryotic translation initiation factor 3
subunit G-B" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC082427
RefSeq:NP_001087888.1 UniGene:Xl.3547 ProteinModelPortal:Q641B2
SMR:Q641B2 PRIDE:Q641B2 GeneID:447749 KEGG:xla:447749
Xenbase:XB-GENE-6070476 Uniprot:Q641B2
Length = 308
Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
++ +F +G ++ + L K K+TG+ KGFAF+ F +E+A +A+
Sbjct: 243 LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 285
>UNIPROTKB|Q6DJI8 [details] [associations]
symbol:eif3g-a "Eukaryotic translation initiation factor 3
subunit G-A" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 EMBL:BC075190 RefSeq:NP_001086477.1
UniGene:Xl.48772 ProteinModelPortal:Q6DJI8 SMR:Q6DJI8 GeneID:446311
KEGG:xla:446311 CTD:446311 Xenbase:XB-GENE-6251503
HOVERGEN:HBG026850 Uniprot:Q6DJI8
Length = 308
Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
++ +F +G ++ + L K K+TG+ KGFAF+ F +E+A +A+
Sbjct: 243 LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 285
>UNIPROTKB|Q28CY2 [details] [associations]
symbol:eif3g "Eukaryotic translation initiation factor 3
subunit G" species:8364 "Xenopus (Silurana) tropicalis" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
CTD:446311 HOVERGEN:HBG026850 HOGENOM:HOG000239560 EMBL:CR855811
EMBL:BC158150 RefSeq:NP_001016749.1 UniGene:Str.41964
ProteinModelPortal:Q28CY2 SMR:Q28CY2 STRING:Q28CY2
Ensembl:ENSXETT00000047701 GeneID:549503 KEGG:xtr:549503
Xenbase:XB-GENE-6070198 Bgee:Q28CY2 Uniprot:Q28CY2
Length = 310
Score = 97 (39.2 bits), Expect = 0.00021, P = 0.00021
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
++ +F +G ++ + L K K+TG+ KGFAF+ F +E+A +A+
Sbjct: 245 LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 287
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 101 (40.6 bits), Expect = 0.00021, P = 0.00021
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
AEL K++ V +K E + + ++ +FS++GK V + + GK KGF FV +
Sbjct: 181 AELGAKAKEFTNVYIKN-FGEEVDDESLKELFSQFGKTLSVKVMR-DPNGKSKGFGFVSY 238
Query: 62 STKEEATKALE 72
E+A KA+E
Sbjct: 239 EKHEDANKAVE 249
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 27 DYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
D ++S F +YG++ L + TG+ KGFAF+ + T++ A +A+
Sbjct: 32 DELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAV 76
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 27 DYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
D ++S F +YG++ L + TG+ KGFAF+ + T++ A +A+
Sbjct: 32 DELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAV 76
>UNIPROTKB|J9NZ20 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AAEX03015129
RefSeq:XP_534835.1 ProteinModelPortal:J9NZ20
Ensembl:ENSCAFT00000049381 GeneID:477640 KEGG:cfa:477640
Uniprot:J9NZ20
Length = 217
Score = 94 (38.1 bits), Expect = 0.00022, P = 0.00022
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 15 VLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 67
V LP ++ + +FSKYGKV V++ K K T K KG AF+ F K+ A
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
>UNIPROTKB|Q8TBF4 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
Length = 217
Score = 94 (38.1 bits), Expect = 0.00022, P = 0.00022
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 15 VLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 67
V LP ++ + +FSKYGKV V++ K K T K KG AF+ F K+ A
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
>MGI|MGI:1914447 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
Length = 217
Score = 94 (38.1 bits), Expect = 0.00022, P = 0.00022
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 15 VLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 67
V LP ++ + +FSKYGKV V++ K K T K KG AF+ F K+ A
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
>RGD|1309851 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
Length = 217
Score = 94 (38.1 bits), Expect = 0.00022, P = 0.00022
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 15 VLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 67
V LP ++ + +FSKYGKV V++ K K T K KG AF+ F K+ A
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
AEL K++ V +K E + + + +FS++GK V + + +GK KGF FV +
Sbjct: 181 AELGAKAKEFTNVYIKN-FGEEVDDENLRELFSQFGKTLSVKVMR-DCSGKSKGFGFVSY 238
Query: 62 STKEEATKALE 72
E+A KA+E
Sbjct: 239 EKHEDANKAVE 249
>UNIPROTKB|F2Z4J5 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9913 "Bos taurus" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 IPI:IPI00700187 UniGene:Bt.49351 OMA:NSEFDAP
EMBL:DAAA02019449 ProteinModelPortal:F2Z4J5 SMR:F2Z4J5 PRIDE:F2Z4J5
Ensembl:ENSBTAT00000003545 Uniprot:F2Z4J5
Length = 320
Score = 97 (39.2 bits), Expect = 0.00022, P = 0.00022
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
++ +F +G ++ + L K K+TG+ KGFAF+ F +E+A +A+
Sbjct: 255 LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 297
>UNIPROTKB|Q3ZC12 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9913 "Bos taurus" [GO:0006413 "translational
initiation" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=ISS] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
KO:K03248 HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC102984 IPI:IPI00700187
RefSeq:NP_001073091.1 UniGene:Bt.49351 ProteinModelPortal:Q3ZC12
SMR:Q3ZC12 STRING:Q3ZC12 PRIDE:Q3ZC12 GeneID:615695 KEGG:bta:615695
CTD:8666 HOGENOM:HOG000239560 InParanoid:Q3ZC12 OrthoDB:EOG4Z0B62
NextBio:20899745 Uniprot:Q3ZC12
Length = 320
Score = 97 (39.2 bits), Expect = 0.00022, P = 0.00022
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
++ +F +G ++ + L K K+TG+ KGFAF+ F +E+A +A+
Sbjct: 255 LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 297
>UNIPROTKB|E2RGG6 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9615 "Canis lupus familiaris" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 KO:K03248 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 CTD:8666 OMA:NSEFDAP
EMBL:AAEX03012427 RefSeq:XP_854113.1 ProteinModelPortal:E2RGG6
Ensembl:ENSCAFT00000028426 GeneID:612971 KEGG:cfa:612971
NextBio:20898427 Uniprot:E2RGG6
Length = 320
Score = 97 (39.2 bits), Expect = 0.00022, P = 0.00022
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
++ +F +G ++ + L K K+TG+ KGFAF+ F +E+A +A+
Sbjct: 255 LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 297
>UNIPROTKB|O75821 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IC;IDA;TAS]
[GO:0003743 "translation initiation factor activity"
evidence=IC;IDA] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044267 "cellular protein metabolic process"
evidence=TAS] Reactome:REACT_71 Reactome:REACT_17015
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 GO:GO:0048471 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724
GO:GO:0005852 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850
Reactome:REACT_1762 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
OMA:NSEFDAP EMBL:U96074 EMBL:AF020833 EMBL:AF092453 EMBL:AF094850
EMBL:BT006889 EMBL:BC000733 EMBL:BC008469 IPI:IPI00290460
RefSeq:NP_003746.2 UniGene:Hs.529059 PDB:2CQ0 PDBsum:2CQ0
ProteinModelPortal:O75821 SMR:O75821 DIP:DIP-31115N IntAct:O75821
MINT:MINT-3001737 STRING:O75821 PhosphoSite:O75821 PaxDb:O75821
PeptideAtlas:O75821 PRIDE:O75821 DNASU:8666 Ensembl:ENST00000253108
GeneID:8666 KEGG:hsa:8666 UCSC:uc002mnd.3 GeneCards:GC19M010225
HGNC:HGNC:3274 HPA:HPA041997 MIM:603913 neXtProt:NX_O75821
PharmGKB:PA162384827 InParanoid:O75821 PhylomeDB:O75821
ChiTaRS:EIF3G EvolutionaryTrace:O75821 GenomeRNAi:8666
NextBio:32507 Bgee:O75821 CleanEx:HS_EIF3G Genevestigator:O75821
GermOnline:ENSG00000130811 Uniprot:O75821
Length = 320
Score = 97 (39.2 bits), Expect = 0.00022, P = 0.00022
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
++ +F +G ++ + L K K+TG+ KGFAF+ F +E+A +A+
Sbjct: 255 LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 297
>MGI|MGI:1858258 [details] [associations]
symbol:Eif3g "eukaryotic translation initiation factor 3,
subunit G" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISO;IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=ISO;IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1858258 GO:GO:0005634 GO:GO:0048471
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
OMA:NSEFDAP ChiTaRS:EIF3G EMBL:U70733 EMBL:AF108214 EMBL:BC008511
IPI:IPI00622371 RefSeq:NP_058572.2 UniGene:Mm.427309
ProteinModelPortal:Q9Z1D1 SMR:Q9Z1D1 IntAct:Q9Z1D1
MINT:MINT-1572167 STRING:Q9Z1D1 PhosphoSite:Q9Z1D1
REPRODUCTION-2DPAGE:Q9Z1D1 PaxDb:Q9Z1D1 PRIDE:Q9Z1D1
Ensembl:ENSMUST00000004206 GeneID:53356 KEGG:mmu:53356
InParanoid:Q9Z1D1 NextBio:310169 Bgee:Q9Z1D1 Genevestigator:Q9Z1D1
GermOnline:ENSMUSG00000070319 Uniprot:Q9Z1D1
Length = 320
Score = 97 (39.2 bits), Expect = 0.00022, P = 0.00022
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
++ +F +G ++ + L K K+TG+ KGFAF+ F +E+A +A+
Sbjct: 255 LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 297
>RGD|1307191 [details] [associations]
symbol:Eif3g "eukaryotic translation initiation factor 3,
subunit G" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=IEA;ISO;ISS] [GO:0006413
"translational initiation" evidence=ISO;ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 RGD:1307191
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 EMBL:CH473993
GO:GO:0005852 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:BC086383 IPI:IPI00365487 RefSeq:NP_001013113.1
UniGene:Rn.107880 ProteinModelPortal:Q5RK09 SMR:Q5RK09
STRING:Q5RK09 PhosphoSite:Q5RK09 PRIDE:Q5RK09 GeneID:298700
KEGG:rno:298700 UCSC:RGD:1307191 InParanoid:Q5RK09 NextBio:644231
ArrayExpress:Q5RK09 Genevestigator:Q5RK09 Uniprot:Q5RK09
Length = 320
Score = 97 (39.2 bits), Expect = 0.00022, P = 0.00022
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
++ +F +G ++ + L K K+TG+ KGFAF+ F +E+A +A+
Sbjct: 255 LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 297
>UNIPROTKB|Q5RK09 [details] [associations]
symbol:Eif3g "Eukaryotic translation initiation factor 3
subunit G" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 RGD:1307191
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 EMBL:CH473993
GO:GO:0005852 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:BC086383 IPI:IPI00365487 RefSeq:NP_001013113.1
UniGene:Rn.107880 ProteinModelPortal:Q5RK09 SMR:Q5RK09
STRING:Q5RK09 PhosphoSite:Q5RK09 PRIDE:Q5RK09 GeneID:298700
KEGG:rno:298700 UCSC:RGD:1307191 InParanoid:Q5RK09 NextBio:644231
ArrayExpress:Q5RK09 Genevestigator:Q5RK09 Uniprot:Q5RK09
Length = 320
Score = 97 (39.2 bits), Expect = 0.00022, P = 0.00022
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
++ +F +G ++ + L K K+TG+ KGFAF+ F +E+A +A+
Sbjct: 255 LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 297
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 98 (39.6 bits), Expect = 0.00022, P = 0.00022
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG+V V L K + T K +GFAFV F + +A A
Sbjct: 15 LNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
>UNIPROTKB|F1S3I3 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9823 "Sus scrofa" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 OMA:NSEFDAP EMBL:CU462940 Ensembl:ENSSSCT00000014925
Uniprot:F1S3I3
Length = 322
Score = 97 (39.2 bits), Expect = 0.00022, P = 0.00022
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
++ +F +G ++ + L K K+TG+ KGFAF+ F +E+A +A+
Sbjct: 257 LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 299
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
AEL K++ V +K E + + ++ +FS++GK V + + GK KGF FV +
Sbjct: 181 AELGAKAKEFTNVYIKN-FGEEVDDESLKELFSQFGKTLSVKVMR-DPNGKSKGFGFVSY 238
Query: 62 STKEEATKALE 72
E+A KA+E
Sbjct: 239 EKHEDANKAVE 249
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 94 (38.1 bits), Expect = 0.00022, P = 0.00022
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 12 GRVVLK-EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
G LK + L + + VF KYG+V V +P+ + T + +GFAFV F K +A A
Sbjct: 12 GMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71
Query: 71 LE 72
++
Sbjct: 72 MD 73
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 97 (39.2 bits), Expect = 0.00022, P = 0.00022
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L PEA D I F +G++ + LP T K +GF F+ F ++ K LE
Sbjct: 155 LNPEAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILE 207
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 101 (40.6 bits), Expect = 0.00023, P = 0.00023
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
AEL K++ V +K E + + + +FS++GK V + + +GK KGF FV +
Sbjct: 181 AELGAKAKEFTNVYIKN-FGEEVDDENLRELFSQFGKTLSVKVMR-DCSGKSKGFGFVSY 238
Query: 62 STKEEATKALE 72
E+A KA+E
Sbjct: 239 EKHEDANKAVE 249
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 98 (39.6 bits), Expect = 0.00023, P = 0.00023
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 15 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 98 (39.6 bits), Expect = 0.00023, P = 0.00023
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 15 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 98 (39.6 bits), Expect = 0.00023, P = 0.00023
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 15 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 94 (38.1 bits), Expect = 0.00023, P = 0.00023
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 12 GRVVLK-EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
G LK + L + + VF KYG+V V +P+ + T + +GFAFV F K +A A
Sbjct: 12 GMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDA 71
Query: 71 LE 72
++
Sbjct: 72 MD 73
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 98 (39.6 bits), Expect = 0.00024, P = 0.00024
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 15 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 98 (39.6 bits), Expect = 0.00024, P = 0.00024
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 15 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 98 (39.6 bits), Expect = 0.00024, P = 0.00024
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 15 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 98 (39.6 bits), Expect = 0.00024, P = 0.00024
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 15 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 98 (39.6 bits), Expect = 0.00024, P = 0.00024
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 15 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 98 (39.6 bits), Expect = 0.00024, P = 0.00024
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 16 LNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 66
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 98 (39.6 bits), Expect = 0.00025, P = 0.00025
Identities = 33/104 (31%), Positives = 51/104 (49%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
A + +N V L D++++VFS+YG++ +V +P K G FV+F
Sbjct: 250 AGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG------FVQF 303
Query: 62 STKEEATKALELGLNPCPTDYQSSILTTTSRLSFGITPLGFESG 105
S K A +AL + LN + TT RLS+G +P +SG
Sbjct: 304 SEKSCAEEALRM-LNGV------QLGGTTVRLSWGRSPSNKQSG 340
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 98 (39.6 bits), Expect = 0.00025, P = 0.00025
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 1 MAELVENNK-KYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFV 59
+ +++ + K + G + + L ++ +E +FS++G +T + S G KG FV
Sbjct: 210 LEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKV-MVHSNGISKGVGFV 268
Query: 60 EFSTKEEATKALELGLN 76
EFST EEA+KA+ L +N
Sbjct: 269 EFSTSEEASKAM-LKMN 284
>UNIPROTKB|E9PK21 [details] [associations]
symbol:PPIE "Peptidyl-prolyl cis-trans isomerase E"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL035404 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL033527 EMBL:AL049824 HGNC:HGNC:9258
ChiTaRS:PPIE IPI:IPI00985437 ProteinModelPortal:E9PK21 SMR:E9PK21
Ensembl:ENST00000470213 ArrayExpress:E9PK21 Bgee:E9PK21
Uniprot:E9PK21
Length = 208
Score = 93 (37.8 bits), Expect = 0.00025, P = 0.00025
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
RV+ L E + + + F +G +T + +P T K +GFAFVEF E+A A++
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
>TAIR|locus:2055956 [details] [associations]
symbol:UBA1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0017091 "AU-rich
element binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0048255
IPI:IPI00520548 RefSeq:NP_850021.1 UniGene:At.25483
ProteinModelPortal:F4IIL5 SMR:F4IIL5 EnsemblPlants:AT2G22090.2
GeneID:816744 KEGG:ath:AT2G22090 OMA:WETTRET Uniprot:F4IIL5
Length = 347
Score = 97 (39.2 bits), Expect = 0.00025, P = 0.00025
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
LP E + + VF YG++ ++ K+TGK KGF FV F T++ A +AL+
Sbjct: 111 LPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 90 (36.7 bits), Expect = 0.00025, P = 0.00025
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCPTDYQS-SIL 87
+++ FSKYG V + + TG+ +GF FV F++ E +A+E +N D ++ ++
Sbjct: 22 LQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE-AMNGQDLDGRNITVN 80
Query: 88 TTTSRLSFGITPLGFESGGW 107
SR S G G GG+
Sbjct: 81 EAQSRRSDGGGGFGGGGGGY 100
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 95 (38.5 bits), Expect = 0.00026, P = 0.00026
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L PEA + I F ++G++ + LP + K +GF F+ F +E K LE
Sbjct: 91 LNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 96 (38.9 bits), Expect = 0.00026, P = 0.00026
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
+ PE ++ + S F++YG+V + ++ G+ +GFAFVEF+T E AL
Sbjct: 36 ISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLAL 87
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 101 (40.6 bits), Expect = 0.00026, P = 0.00026
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 65
+N Y ++ + +P A D + +F ++G V V+L K + TG+ +G FV+++T E
Sbjct: 116 DNRNNYVKLFIGS-VPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSE 174
Query: 66 EATKAL 71
EA +A+
Sbjct: 175 EAERAI 180
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 101 (40.6 bits), Expect = 0.00026, P = 0.00026
Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 65
+N Y ++ + +P A D + +F ++G V V+L K + TG+ +G FV+++T E
Sbjct: 116 DNRNNYVKLFIGS-VPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSE 174
Query: 66 EATKAL 71
EA +A+
Sbjct: 175 EAERAI 180
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 95 (38.5 bits), Expect = 0.00027, P = 0.00027
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 27 DYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
D + +F +GK+ + L K TG+ KG+ F+ FS E A +ALE
Sbjct: 107 DMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 152
>UNIPROTKB|H0YCP8 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC105219 EMBL:AC105049 HGNC:HGNC:17042 Ensembl:ENST00000532884
Uniprot:H0YCP8
Length = 273
Score = 95 (38.5 bits), Expect = 0.00027, P = 0.00027
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
LP + D I+SVF +GK+ +L + +TGK KG+ F+E+ + + A+
Sbjct: 103 LPQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAV 154
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-MAMN 68
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-MAMN 68
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-MAMN 68
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-MAMN 68
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+P EA + ++ +FS+ G V L + TGK KG+ F E+ +E A A+ LN
Sbjct: 4 IPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR-NLN 59
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
LP + + FS++G + V + + TG+ KG+AFV + T ++A KAL+
Sbjct: 51 LPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALD 103
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
LP + + FS++G + V + + TG+ KG+AFV + T ++A KAL+
Sbjct: 51 LPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALD 103
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 97 (39.2 bits), Expect = 0.00028, P = 0.00028
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
AEL E ++ V +K + + + + SVFSKYG+ V + K ++GK K F FV F
Sbjct: 180 AELREKPAEFTNVYIKN-FGDDMDDESLRSVFSKYGQTLSVKVMK-DASGKSKRFGFVSF 237
Query: 62 STKEEATKALE 72
+ + A A+E
Sbjct: 238 DSHKAAKNAVE 248
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 102 (41.0 bits), Expect = 0.00028, P = 0.00028
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 15 VLKEKLPPEAEHDYIESVFSKYGKVTYVSLPK-FKSTGKLKGFAFVEFSTKEEATKA 70
+L +P +A I +FS +G++ V LPK TG +GF FV+F TK++A +A
Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Score = 99 (39.9 bits), Expect = 0.00059, P = 0.00059
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 65
E+ + GR+ ++ LP + + +E +FSKYG ++ + P T K KGFAF+ F E
Sbjct: 396 EDLAESGRLFVRN-LPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPE 454
Query: 66 EATKA 70
A KA
Sbjct: 455 HAVKA 459
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 95 (38.5 bits), Expect = 0.00030, P = 0.00030
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L PEA + I F ++G++ + LP + K +GF F+ F +E K LE
Sbjct: 161 LNPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 97 (39.2 bits), Expect = 0.00030, P = 0.00030
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ + L K + T K +GFAFV F + +A A
Sbjct: 15 LNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDA 65
>UNIPROTKB|F5H6R6 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048255
EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI01012829
ProteinModelPortal:F5H6R6 SMR:F5H6R6 Ensembl:ENST00000541060
ArrayExpress:F5H6R6 Bgee:F5H6R6 Uniprot:F5H6R6
Length = 201
Score = 92 (37.4 bits), Expect = 0.00030, P = 0.00030
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE-----LG 74
L P+ + I F +G+V + LP T K +GF F+ F +E K +E +G
Sbjct: 35 LSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG 94
Query: 75 LNPC 78
L+ C
Sbjct: 95 LSKC 98
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 97 (39.2 bits), Expect = 0.00030, P = 0.00030
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKA 70
L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 15 LNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDA 65
>UNIPROTKB|F1RVC9 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 EMBL:CU627987
Ensembl:ENSSSCT00000010129 OMA:DASSHGW Uniprot:F1RVC9
Length = 202
Score = 92 (37.4 bits), Expect = 0.00030, P = 0.00030
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE-----LG 74
L P+ + I F +G+V + LP T K +GF F+ F +E K +E +G
Sbjct: 36 LSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG 95
Query: 75 LNPC 78
L+ C
Sbjct: 96 LSKC 99
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 89 (36.4 bits), Expect = 0.00031, P = 0.00031
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-MAMN 68
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 95 (38.5 bits), Expect = 0.00033, P = 0.00033
Identities = 24/70 (34%), Positives = 34/70 (48%)
Query: 7 NNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 66
++K RVV +P + I +FS+ GKV L + TGK KGF F E+ +
Sbjct: 2 SSKPPSRVVFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDS 61
Query: 67 ATKALELGLN 76
A A+ LN
Sbjct: 62 AASAVR-NLN 70
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 92 (37.4 bits), Expect = 0.00034, P = 0.00034
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE-----LG 74
L P+ + I F +G+V + LP T K +GF F+ F +E K +E +G
Sbjct: 93 LSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG 152
Query: 75 LNPC 78
L+ C
Sbjct: 153 LSKC 156
>TAIR|locus:2065190 [details] [associations]
symbol:AT2G47310 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:BT015132 EMBL:BT015799 EMBL:AK229352 IPI:IPI00531580
RefSeq:NP_850472.1 UniGene:At.36378 ProteinModelPortal:Q6AWW6
SMR:Q6AWW6 PRIDE:Q6AWW6 EnsemblPlants:AT2G47310.1 GeneID:819344
KEGG:ath:AT2G47310 TAIR:At2g47310 HOGENOM:HOG000084673
InParanoid:Q6AWW6 OMA:RERIGFA PhylomeDB:Q6AWW6
ProtClustDB:CLSN2918289 Genevestigator:Q6AWW6 Uniprot:Q6AWW6
Length = 512
Score = 98 (39.6 bits), Expect = 0.00035, P = 0.00035
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 25 EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
E+D I VF KYG VT + LPK K TG+ + F+++ EE A+
Sbjct: 123 EYD-IRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAI 168
>UNIPROTKB|D6RF41 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:28401
EMBL:AC009567 IPI:IPI00965528 ProteinModelPortal:D6RF41 SMR:D6RF41
Ensembl:ENST00000512640 ArrayExpress:D6RF41 Bgee:D6RF41
Uniprot:D6RF41
Length = 133
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
G V K+P + D + VF + GK+ L + +G+ +G+AFV ++TKEEA A+
Sbjct: 60 GCEVFVGKIPRDMYEDELVPVFERAGKIYEFRL-MMEFSGENRGYAFVMYTTKEEAQLAI 118
Query: 72 ELGLN 76
+ LN
Sbjct: 119 RI-LN 122
>UNIPROTKB|H3BPG5 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471112 EMBL:AC009065 UniGene:Hs.355643 UniGene:Hs.507343
UniGene:Hs.733012 HGNC:HGNC:10080 ChiTaRS:RNPS1 SMR:H3BPG5
Ensembl:ENST00000561718 Ensembl:ENST00000566397 Uniprot:H3BPG5
Length = 128
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 32 VFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALE 72
+FS YGK+ + +P + L KG+A+VEF +EA KAL+
Sbjct: 3 IFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 44
>UNIPROTKB|H3BR57 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1 Ensembl:ENST00000564760
Bgee:H3BR57 Uniprot:H3BR57
Length = 112
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 32 VFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEATKALE 72
+FS YGK+ + +P + L KG+A+VEF +EA KAL+
Sbjct: 3 IFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 44
>TAIR|locus:2125702 [details] [associations]
symbol:La1 "La protein 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS;IDA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0000478 "endonucleolytic cleavage
involved in rRNA processing" evidence=RCA] [GO:0006406 "mRNA export
from nucleus" evidence=RCA] [GO:0006606 "protein import into
nucleus" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] [GO:0009561 "megagametogenesis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0048825
"cotyledon development" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005618 GO:GO:0005654 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
SMART:SM00715 HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
EMBL:AY056237 IPI:IPI00530410 RefSeq:NP_567904.1 UniGene:At.2236
ProteinModelPortal:Q93ZV7 SMR:Q93ZV7 STRING:Q93ZV7 PRIDE:Q93ZV7
EnsemblPlants:AT4G32720.1 GeneID:829408 KEGG:ath:AT4G32720
TAIR:At4g32720 InParanoid:Q93ZV7 OMA:LPRDNFL PhylomeDB:Q93ZV7
ProtClustDB:CLSN2689721 Genevestigator:Q93ZV7 Uniprot:Q93ZV7
Length = 433
Score = 97 (39.2 bits), Expect = 0.00035, P = 0.00035
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 1 MAELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFV 59
+ +L+E R V + + + +ES FS+YGKV V +P+ + ++ G A V
Sbjct: 106 LEDLIEQLN--ARTVAASPFSYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALV 163
Query: 60 EFSTKEEATKALELGL 75
EF T+E+A ++ L
Sbjct: 164 EFPTEEDAQNVMKQNL 179
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 89 (36.4 bits), Expect = 0.00038, P = 0.00038
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-MAMN 68
>TAIR|locus:2050024 [details] [associations]
symbol:AT2G21440 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC006841 GO:GO:0003676 HSSP:Q61474
eggNOG:NOG323727 KO:K14573 OMA:MRSKPAT EMBL:AY059760 EMBL:BT003003
IPI:IPI00535350 PIR:C84601 RefSeq:NP_565513.1 UniGene:At.14070
ProteinModelPortal:Q9SJT4 SMR:Q9SJT4 STRING:Q9SJT4 PaxDb:Q9SJT4
PRIDE:Q9SJT4 EnsemblPlants:AT2G21440.1 GeneID:816683
KEGG:ath:AT2G21440 TAIR:At2g21440 HOGENOM:HOG000240498
InParanoid:Q9SJT4 PhylomeDB:Q9SJT4 ProtClustDB:CLSN2688313
ArrayExpress:Q9SJT4 Genevestigator:Q9SJT4 Uniprot:Q9SJT4
Length = 1003
Score = 101 (40.6 bits), Expect = 0.00038, P = 0.00038
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 65
E +K ++ LP +A+ I+ VFS G V V +PK TG KGFAFV+F+ K+
Sbjct: 324 EGSKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKK 383
Query: 66 EATKALE 72
+A A++
Sbjct: 384 DAANAIK 390
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 96 (38.9 bits), Expect = 0.00038, P = 0.00038
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP 79
L E +E+VF KYG++ + L K + T K +GFAFV F + +A K + +N
Sbjct: 15 LNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADA-KDVARDMNGKS 73
Query: 80 TDYQSSILTTTSRLSF 95
D ++ + ++ SF
Sbjct: 74 LDGKAIKVEQATKPSF 89
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 96 (38.9 bits), Expect = 0.00038, P = 0.00038
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP 79
L E +E+VF KYG++ + L K + T K +GFAFV F + +A K + +N
Sbjct: 15 LNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADA-KDVARDMNGKS 73
Query: 80 TDYQSSILTTTSRLSF 95
D ++ + ++ SF
Sbjct: 74 LDGKAIKVEQATKPSF 89
>DICTYBASE|DDB_G0286395 [details] [associations]
symbol:u2af2 "U2 snRNP auxiliary factor large
subunit" species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008187 "poly-pyrimidine tract binding"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0286395 GenomeReviews:CM000153_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000085 GO:GO:0000398
GO:GO:0005686 GO:GO:0008187 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_637725.1 ProteinModelPortal:Q54LV5
SMR:Q54LV5 EnsemblProtists:DDB0233353 GeneID:8625590
KEGG:ddi:DDB_G0286395 InParanoid:Q54LV5 OMA:DELMDND Uniprot:Q54LV5
Length = 671
Score = 99 (39.9 bits), Expect = 0.00038, P = 0.00038
Identities = 31/96 (32%), Positives = 45/96 (46%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLNPCP 79
LP + ++S+ S YGK+ +L K +TG KGFAF E+ E A LN P
Sbjct: 385 LPSNLSEEQVKSLLSAYGKLKAFNLVKDTNTGVSKGFAFCEYQDSEVTDVACSK-LNGIP 443
Query: 80 TDYQSSILTTTSRLSFGITPLGFES-GGWWFKSSHE 114
++ ++ R S G P G S GG + H+
Sbjct: 444 LADKTLVV---QRASIGSKPPGDASKGGDVTQQQHQ 476
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 89 (36.4 bits), Expect = 0.00039, P = 0.00039
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-MAMN 68
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 96 (38.9 bits), Expect = 0.00039, P = 0.00039
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 23 EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
E + +E+ F KYG+++ V L K + T K +GFAF+ F + +A A+
Sbjct: 18 ETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAV 66
>RGD|1311411 [details] [associations]
symbol:Ppie "peptidylprolyl isomerase E (cyclophilin E)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003755 "peptidyl-prolyl cis-trans isomerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0006457 "protein folding" evidence=IEA] [GO:0045070 "positive
regulation of viral genome replication" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR002130 InterPro:IPR012677 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PRINTS:PR00153 PROSITE:PS00170
PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360 RGD:1311411
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000065981 GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 HOVERGEN:HBG001065 HSSP:P52011
CTD:10450 KO:K09564 EMBL:AY325152 IPI:IPI00382259
RefSeq:NP_001041333.1 UniGene:Rn.18887 SMR:Q7TP89
Ensembl:ENSRNOT00000043799 GeneID:298508 KEGG:rno:298508
UCSC:RGD:1311411 NextBio:643802 Genevestigator:Q7TP89
Uniprot:Q7TP89
Length = 255
Score = 93 (37.8 bits), Expect = 0.00040, P = 0.00040
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
RV+ L E + + + F +G +T + +P T K +GFAFVEF E+A A++
Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 99 (39.9 bits), Expect = 0.00040, P = 0.00040
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 1 MAELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVE 60
M EL E+ KY V +K + + + ++FSK+G++T ++ + GK KGF FV
Sbjct: 227 MKELGESGLKYTNVFVKN-FGEHLDQEKLSAMFSKFGEITS-AVVMTDAQGKPKGFGFVA 284
Query: 61 FSTKEEATKALE 72
F+ ++ A +A+E
Sbjct: 285 FADQDAAGQAVE 296
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 93 (37.8 bits), Expect = 0.00040, P = 0.00040
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE-----LG 74
L P+ + I F +G+V + LP T K +GF F+ F +E K +E +G
Sbjct: 91 LSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG 150
Query: 75 LNPC 78
L+ C
Sbjct: 151 LSKC 154
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 95 (38.5 bits), Expect = 0.00040, P = 0.00040
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L PE D + + F+ +GK++ + K +TGK KG+ F+ F K +A A++
Sbjct: 104 LSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQ 156
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 93 (37.8 bits), Expect = 0.00040, P = 0.00040
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE-----LG 74
L P+ + I F +G+V + LP T K +GF F+ F +E K +E +G
Sbjct: 92 LSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG 151
Query: 75 LNPC 78
L+ C
Sbjct: 152 LSKC 155
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 89 (36.4 bits), Expect = 0.00042, P = 0.00042
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-MAMN 68
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 89 (36.4 bits), Expect = 0.00042, P = 0.00042
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-MAMN 68
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 89 (36.4 bits), Expect = 0.00042, P = 0.00042
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-MAMN 68
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 89 (36.4 bits), Expect = 0.00042, P = 0.00042
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-MAMN 68
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 89 (36.4 bits), Expect = 0.00042, P = 0.00042
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-MAMN 68
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 89 (36.4 bits), Expect = 0.00042, P = 0.00042
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-MAMN 68
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 89 (36.4 bits), Expect = 0.00042, P = 0.00042
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-MAMN 68
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 89 (36.4 bits), Expect = 0.00042, P = 0.00042
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+E VFSKYG+++ V + K + T + +GF FV F ++A A+ + +N
Sbjct: 22 LEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM-MAMN 68
>UNIPROTKB|E1BUM0 [details] [associations]
symbol:PPIE "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003755 "peptidyl-prolyl cis-trans
isomerase activity" evidence=IEA] [GO:0006457 "protein folding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002130
InterPro:IPR012677 InterPro:IPR016304 InterPro:IPR020892
Pfam:PF00076 Pfam:PF00160 PIRSF:PIRSF001475 PRINTS:PR00153
PROSITE:PS00170 PROSITE:PS50072 PROSITE:PS50102 SMART:SM00360
GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0003755 SUPFAM:SSF50891 GO:GO:0000413
GeneTree:ENSGT00690000101651 CTD:10450 KO:K09564 OMA:AFIEFEL
EMBL:AADN02043740 EMBL:AADN02043741 EMBL:AADN02043742
EMBL:AADN02043743 IPI:IPI00575389 RefSeq:XP_423739.2
UniGene:Gga.4709 ProteinModelPortal:E1BUM0
Ensembl:ENSGALT00000021831 GeneID:426061 KEGG:gga:426061
NextBio:20827786 ArrayExpress:E1BUM0 Uniprot:E1BUM0
Length = 301
Score = 94 (38.1 bits), Expect = 0.00042, P = 0.00042
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
RV+ L E + + + F +G +T + +P T K +GFAFVEF E+A A++
Sbjct: 6 RVLYVGGLAEEVDEKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 93 (37.8 bits), Expect = 0.00042, P = 0.00042
Identities = 24/48 (50%), Positives = 30/48 (62%)
Query: 25 EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
EHD IE F YGKVT V + + F+FV+F T+E+ATKALE
Sbjct: 107 EHD-IEKHFEPYGKVTNVRIRR--------NFSFVQFETQEDATKALE 145
WARNING: HSPs involving 105 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.132 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 115 115 0.00091 102 3 11 23 0.39 31
29 0.45 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 355
No. of states in DFA: 548 (58 KB)
Total size of DFA: 116 KB (2076 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 12.06u 0.07s 12.13t Elapsed: 00:00:08
Total cpu time: 12.08u 0.07s 12.15t Elapsed: 00:00:09
Start: Thu Aug 15 10:56:49 2013 End: Thu Aug 15 10:56:58 2013
WARNINGS ISSUED: 2