RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3928
(115 letters)
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 51.9 bits (124), Expect = 9e-11
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPK-FKSTGKLKGFAFVEFSTKEEATKALELGLN 76
+P +A I +FS +G++ V LPK TG +GF FV+F TK++A KA +
Sbjct: 16 IPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH 73
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 49.9 bits (119), Expect = 4e-10
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L P+ + FS G + + + + T + G+A+V F +A +AL+
Sbjct: 8 LHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 60
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 49.6 bits (118), Expect = 6e-10
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
L + + + F ++G+V + + T + +GF FV F + K L
Sbjct: 8 LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 48.8 bits (116), Expect = 1e-09
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
LP D ++++F KYG + ++ + K TG+ +G AFV ++ +EEA +A+
Sbjct: 14 LPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS 66
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 46.9 bits (111), Expect = 5e-09
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
L P+ + I F +G+V + LP T K +GF F+ F +E K +E
Sbjct: 7 LSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 46.2 bits (109), Expect = 2e-08
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
L E + + + + ++GK+T + + ++ + +GF FV FS+ E A+
Sbjct: 28 LSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 45.0 bits (106), Expect = 4e-08
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
L E + + S F ++G +T + + +T + +GF FV ++T EE A+
Sbjct: 14 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 44.0 bits (103), Expect = 1e-07
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKS-----TGKLKGFAFVEFSTKEEATKALEL 73
+P + + F+ ++ ++ + K FAF+EF + +E T+A+
Sbjct: 9 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAF 67
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 43.4 bits (102), Expect = 1e-07
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
L + ++ FSK+G+V +L TG+ +GF FV F E K ++
Sbjct: 7 LSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 43.9 bits (103), Expect = 2e-07
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
R++ LP + + + +F KYG + + +T + +G A+V + +A A +
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQ---IRVGNTPETRGTAYVVYEDIFDAKNACD 64
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 43.1 bits (101), Expect = 2e-07
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
LP D ++ + + +G + +L K +TG KG+AF E+ +A+
Sbjct: 9 LPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 43.0 bits (101), Expect = 2e-07
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
LP + ++ FS +G+V V + K TG KGF FV F+ E K +
Sbjct: 16 LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 68
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 43.1 bits (101), Expect = 2e-07
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 20 LPPEAEHDYIESVFSKYGKVT---YVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L + ++ VFSK G + GF FVE+ E+A KAL+
Sbjct: 6 LNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 44.6 bits (104), Expect = 3e-07
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
L E + + S F ++G +T + + +T + +GF FV ++T EE A+
Sbjct: 14 LSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Score = 43.5 bits (101), Expect = 6e-07
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
+ + E ++ F +YGK+ + + + +GK +GFAFV F + K +
Sbjct: 105 IKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 158
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 42.6 bits (100), Expect = 4e-07
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L + I +FSK G + + + K GF FVE+ ++ +A A+
Sbjct: 15 LSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 41.9 bits (98), Expect = 7e-07
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
L +E FS GKV V + +++ + KG A+VEF + A+ L
Sbjct: 26 LAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGL 79
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 41.6 bits (97), Expect = 9e-07
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
LP +E +FS+YG++ + + TG +G F+ F + EA +A++
Sbjct: 14 LPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 41.4 bits (97), Expect = 1e-06
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 9/72 (12%)
Query: 7 NNKKYGRVVL--------KEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAF 58
+ ++ RVV+ + P ++ E + + K + G A
Sbjct: 3 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DRHPDGVAS 61
Query: 59 VEFSTKEEATKA 70
V F EEA
Sbjct: 62 VSFRDPEEADYC 73
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 41.1 bits (96), Expect = 1e-06
Identities = 12/53 (22%), Positives = 29/53 (54%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
LP + + ++F G + + + TG G+AFV+F+++ ++ +A++
Sbjct: 10 LPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 40.5 bits (94), Expect = 2e-06
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVS-LPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L PE + + FS +G + + + TG KG+AF+ F++ + + A+E
Sbjct: 6 LDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 59
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 39.9 bits (93), Expect = 3e-06
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
G++++ L I+ +F+++G + ++ + +G+ G A V F K +A KA+
Sbjct: 1 GKLLVS-NLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAM 58
Query: 72 E 72
+
Sbjct: 59 K 59
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 40.4 bits (94), Expect = 3e-06
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 20 LPPEAEHDYIESVFSKYGKVTY--VSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
+P + + I +K + + K +GFAFVE+ + A A
Sbjct: 9 IPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 39.7 bits (92), Expect = 3e-06
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
L + ++ F ++GKV L K+T + +GF FV F +++ K E+
Sbjct: 7 LSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 40.0 bits (93), Expect = 4e-06
Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 2 AELVENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 61
++ + + V ++ E + + KYG+V +++ L G +V+F
Sbjct: 17 SQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCD-NLGDHLVGNVYVKF 75
Query: 62 STKEEATKALE 72
+E+A KA+
Sbjct: 76 RREEDAEKAVI 86
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 39.5 bits (92), Expect = 6e-06
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 20 LPPE-AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L + +E++FSKYGK+ S+ K GFAFV++ + A A+
Sbjct: 23 LNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVNERNARAAVA 68
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 38.5 bits (89), Expect = 1e-05
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L + + +F + G V +PK + TG+ +G+ FVEF ++E+A A++
Sbjct: 17 LDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 69
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 38.5 bits (89), Expect = 2e-05
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L D + +FSK+G V + + + A ++++ A A
Sbjct: 15 LFYPVTLDVLHQIFSKFGTVLKIITFTKNN----QFQALLQYADPVSAQHAKL 63
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 38.0 bits (88), Expect = 2e-05
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
P + YI F++YG + + + + + +K +A KAL
Sbjct: 12 FPQASA-SYILLQFAQYGNILKHVMSNTG------NWMHIRYQSKLQARKALSK 58
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 37.4 bits (86), Expect = 3e-05
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
LP + S+F G++ L + K TG+ G+ FV + ++A KA+
Sbjct: 10 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 37.3 bits (86), Expect = 4e-05
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
+ + FS +G++ + + K ++FV FST E A A+
Sbjct: 26 IASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHESAAHAIV 72
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 37.5 bits (86), Expect = 5e-05
Identities = 11/44 (25%), Positives = 13/44 (29%), Gaps = 6/44 (13%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
ES+F Y K T K + FS A A
Sbjct: 27 FESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARL 64
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 37.6 bits (86), Expect = 5e-05
Identities = 19/68 (27%), Positives = 28/68 (41%)
Query: 6 ENNKKYGRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 65
+ + G V + LP EAE+ ++ F K V + GK G FVEF +
Sbjct: 12 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEA 71
Query: 66 EATKALEL 73
+ AL
Sbjct: 72 DYKAALCR 79
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 37.1 bits (85), Expect = 5e-05
Identities = 9/54 (16%), Positives = 18/54 (33%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
+P + + G+ G A V+F +++A K+ L
Sbjct: 16 IPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL 69
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 36.6 bits (84), Expect = 6e-05
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L + VFSKYG + VS+ + + + +GFAFV F ++A +A E
Sbjct: 17 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 69
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 36.2 bits (83), Expect = 9e-05
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L E + + + F +G +T + +P T K +GFAFVEF E+A A++
Sbjct: 13 LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 36.2 bits (83), Expect = 1e-04
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
+P D I F Y + K+ G G A V F +++EAT A+
Sbjct: 17 MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 69
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 36.2 bits (83), Expect = 1e-04
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L + ++ +F +G ++ + L K K+TG+ KGFAF+ F +E+A +A+
Sbjct: 16 LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 36.3 bits (83), Expect = 1e-04
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
LP + F +G + + + TGK +G+ FV + + A +A +
Sbjct: 18 LPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 35.1 bits (80), Expect = 3e-04
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L + + +E +FS YG ++ + P T K KGFAFV F E A KA
Sbjct: 16 LSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 34.6 bits (79), Expect = 4e-04
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
+ D + FS+YG V V + FAFV F+ + A
Sbjct: 13 CTGDMTEDELREFFSQYGDVMDV-----FIPKPFRAFAFVTFADDQIAQSLCG 60
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.0 bits (80), Expect = 4e-04
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 16 LKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTG--KLKGFAFVEFSTKEEATKALE 72
L + E + + SKYG V + +P+ G FVEF++ + KA++
Sbjct: 18 LLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQ 76
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 34.7 bits (79), Expect = 5e-04
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
VV L + + V K G V + +P K ++F + T EE+ +A
Sbjct: 21 LVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARYRTTEESKRAYV 74
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 34.2 bits (78), Expect = 5e-04
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L ++ + FS +G + + ++ KG+ FV F T+E A +A+E
Sbjct: 16 LDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIE 66
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 33.9 bits (77), Expect = 6e-04
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
G ++ + EA+ D I+ F YG++ + L + TG KG+A VE+ T ++A A
Sbjct: 7 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 66
Query: 72 E 72
E
Sbjct: 67 E 67
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 34.2 bits (78), Expect = 6e-04
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
LPP+ + + +F KYGK V + K K F F+ T+ A A
Sbjct: 16 LPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIAKV 62
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 33.9 bits (77), Expect = 7e-04
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L D ++ VF ++ V GK KG A++EF ++ +A K LE
Sbjct: 24 LSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLE 71
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 33.5 bits (76), Expect = 0.001
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
+++ L + IE F+ + K++ +AFV FS +E+A +A++
Sbjct: 9 KILYVRNLMLSTSEEMIEKEFNNIKPG------AVERVKKIRDYAFVHFSNREDAVEAMK 62
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 33.2 bits (75), Expect = 0.001
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L + +E VFSKYG+++ V + K + T + +GF FV F ++A A+
Sbjct: 13 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 32.8 bits (74), Expect = 0.001
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
+ + E ++ F +YGK+ + + + +GK +GFAFV F + K +
Sbjct: 10 IKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 63
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 33.3 bits (75), Expect = 0.002
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
V LP + I FS V G+ G AFV+F+++E A KAL
Sbjct: 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 74
Query: 72 EL 73
+
Sbjct: 75 KK 76
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 32.8 bits (74), Expect = 0.002
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 12 GRVVLKEKLPPEA-EHDYIESVFSKYGKVTYVSLPKF-KSTGKLKGFAFVEFSTKEEATK 69
GR ++ L E + + + F +G + +++P K AF+ F K+ A +
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 63
Query: 70 ALEL 73
AL++
Sbjct: 64 ALQM 67
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 32.5 bits (73), Expect = 0.002
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
PP I + V + FA+++ ++KE+A +E
Sbjct: 9 FPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 32.4 bits (73), Expect = 0.002
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L P D + +F G+AFV++ + A +A+E
Sbjct: 9 LSPAVTADDLRQLFGDRKLPLA------GQVLLKSGYAFVDYPDQNWAIRAIE 55
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 32.3 bits (73), Expect = 0.003
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L + I +FS+ G + + FVEF +A AL
Sbjct: 16 LSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALA 66
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 32.8 bits (74), Expect = 0.003
Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKF--------KSTGKLKGFAFVEFSTKEEATKAL 71
L D + F + G V K TGK KG A V + A A+
Sbjct: 16 LNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAV 75
Query: 72 E 72
E
Sbjct: 76 E 76
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 31.3 bits (70), Expect = 0.005
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L P + + YGK+ K+T K KG+ FV+F + A KA+
Sbjct: 6 LQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 58
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 32.0 bits (72), Expect = 0.005
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
LP E + +F +G V + K T K F FV + A A++
Sbjct: 26 LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQ 78
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 31.2 bits (70), Expect = 0.008
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 20 LPPEA-EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
L + + + +S+ + + + + + K++G AFV F AT AL
Sbjct: 11 LNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALR 64
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 30.9 bits (69), Expect = 0.012
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 12 GRVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKAL 71
G+ V L ++E + + V ++G + YV + T KG AF +F T+E A K L
Sbjct: 8 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 67
Query: 72 E 72
Sbjct: 68 A 68
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 30.8 bits (69), Expect = 0.012
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
+P + +F ++GK+ V + + K GF FV F +A +A E
Sbjct: 19 IPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK--GFGFVTFENSADADRARE 69
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 29.5 bits (65), Expect = 0.038
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
L P ++ S+ ++ TG + F +V+F + E+ KALEL
Sbjct: 21 LNPNKSVAELKVAISELFAKNDLA-VVDVRTGTNRKFGYVDFESAEDLEKALEL 73
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 29.0 bits (64), Expect = 0.064
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
+P EA + ++ +FS+ G V L + TGK KG+ F E+ +E A A+
Sbjct: 16 IPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 68
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 27.0 bits (59), Expect = 0.27
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
+PP + ++ +FS G V FK K + A ++ + EEA +AL
Sbjct: 18 IPPSVSEEDLKVLFSSNGGVVK----GFKFFQKDRKMALIQMGSVEEAVQALI 66
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 27.1 bits (59), Expect = 0.32
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
VV L + K+G + YV + FK A VEF + A + +
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QALVEFENIDSAKECVT 69
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 26.2 bits (57), Expect = 0.43
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 20 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALEL 73
P +A D I+ G+V + + KG FV F + E A K +E
Sbjct: 14 FPTDATLDDIKEWLEDKGQVLNIQ-MRRTLHKAFKGSIFVVFDSIESAKKFVET 66
>d2i9xa1 d.366.1.1 (A:1-84) Putative septation protein SpoVG
{Staphylococcus epidermidis [TaxId: 1282]}
Length = 84
Score = 25.8 bits (57), Expect = 0.64
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 38 KVTYVSLPKFKSTGKLKGFAFVEF 61
KVT V L K ++ G++K +
Sbjct: 2 KVTDVRLRKIQTDGRMKALVSITL 25
>d2ia9a1 d.366.1.1 (A:1-92) Putative septation protein SpoVG
{Bacillus subtilis [TaxId: 1423]}
Length = 92
Score = 24.7 bits (54), Expect = 1.6
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 38 KVTYVSLPKFKSTGKLKGFAFVEF 61
+VT V L + + G+++ A +
Sbjct: 2 EVTDVRLRRVNTDGRMRAIASITL 25
>d2rdza1 a.138.1.3 (A:38-477) Cytochrome c nitrite reductase
{Escherichia coli [TaxId: 562]}
Length = 440
Score = 25.2 bits (54), Expect = 2.6
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 60 EFSTKEEATKALELGLNPCPTDYQSSILTT 89
+ STKE+A +A+ L + + Q I T
Sbjct: 396 DISTKEKAQQAIGLNMEQIKAEKQDFIKTV 425
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 24.0 bits (51), Expect = 3.3
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 13 RVVLKEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
RV+ KLP E + ++ +GKVT + + K K+ AF+E +T+E A +
Sbjct: 9 RVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN------QAFLELATEEAAITMVN 62
>d1fpn1_ b.121.4.1 (1:) Rhinovirus coat proteins {Human rhinovirus
A 2 (HRV-2) [TaxId: 12130]}
Length = 269
Score = 24.0 bits (52), Expect = 5.6
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 29 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 65
+ES + G + L + + F + +E
Sbjct: 53 LESFLGRSGCIHESKLEVTLANYNKENFTVWAINLQE 89
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 23.1 bits (49), Expect = 5.6
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 27 DYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEATKALE 72
+ FS +G + +S+ + AFV + E A +A+
Sbjct: 18 TLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESADQAVA 57
>d1fida_ d.171.1.1 (A:) Fibrinogen C-terminal domains {Human (Homo
sapiens), gamma [TaxId: 9606]}
Length = 259
Score = 24.0 bits (51), Expect = 6.4
Identities = 4/10 (40%), Positives = 4/10 (40%)
Query: 104 SGGWWFKSSH 113
GWW H
Sbjct: 188 GSGWWMNKCH 197
>d1jlna_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus),
ptp-sl/br7 [TaxId: 10090]}
Length = 297
Score = 23.3 bits (49), Expect = 9.0
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 13 RVVLKEKLPPEAEHDYIESVF 33
RV L+ K ++ YI + +
Sbjct: 72 RVCLRPKNITDSLSTYINANY 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.389
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 435,087
Number of extensions: 17424
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 78
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.3 bits)