BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3929
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 42 SGTLDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVI 86
+GT+ LI+ + T Y D ++ FL + R F KP ELL +I
Sbjct: 406 AGTVIKLIERL--TYHMYADPNFVRTFLTTYRSFCKPQELLSLII 448
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 42 SGTLDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVI 86
+GT+ LI+ + T Y D ++ FL + R F KP ELL +I
Sbjct: 406 AGTVIKLIERL--TYHMYADPNFVRTFLTTYRSFCKPQELLSLII 448
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 30.0 bits (66), Expect = 0.36, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 42 SGTLDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVI 86
+GT+ LI+ + T Y D ++ FL + R F KP ELL +I
Sbjct: 603 AGTVIKLIERL--TYHMYADPNFVRTFLTTYRSFCKPQELLSLII 645
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of
Sevenless (Rem-Cdc25) In The Absence Of Ras
Length = 490
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 42 SGTLDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVI 86
+GT+ LI+ + T Y D ++ FL + R F KP ELL +I
Sbjct: 44 AGTVIKLIERL--TYHMYADPNFVRTFLTTYRSFCKPQELLSLII 86
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 484
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 42 SGTLDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVI 86
+GT+ LI+ + T Y D ++ FL + R F KP ELL +I
Sbjct: 38 AGTVIKLIERL--TYHMYADPNFVRTFLTTYRSFCKPQELLSLII 80
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
Length = 477
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 42 SGTLDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVI 86
+GT+ LI+ + T Y D ++ FL + R F KP ELL +I
Sbjct: 36 AGTVIKLIERL--TYHMYADPNFVRTFLTTYRSFCKPQELLSLII 78
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVV|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVX|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 481
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 42 SGTLDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVI 86
+GT+ LI+ + T Y D ++ FL + R F KP ELL +I
Sbjct: 38 AGTVIKLIERL--TYHMYADPNFVRTFLTTYRSFCKPQELLSLII 80
>pdb|3Q48|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Cupb2
Chaperone
pdb|3Q48|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Cupb2
Chaperone
Length = 257
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 53 VPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVIALCDVQQKLTDKTPHGKKELIR 108
VP D + A F+F +LF +P +L A +Q K + GKK +++
Sbjct: 121 VPPRDEDENNALQFSFRSRFKLFFRPSQLKSVDSAAGKLQWKFLESGGAGKKTVVQ 176
>pdb|3MDN|A Chain A, Structure Of Glutamine Aminotransferase Class-Ii Domain
Protein (Spo2029) From Silicibacter Pomeroyi
pdb|3MDN|B Chain B, Structure Of Glutamine Aminotransferase Class-Ii Domain
Protein (Spo2029) From Silicibacter Pomeroyi
pdb|3MDN|C Chain C, Structure Of Glutamine Aminotransferase Class-Ii Domain
Protein (Spo2029) From Silicibacter Pomeroyi
pdb|3MDN|D Chain D, Structure Of Glutamine Aminotransferase Class-Ii Domain
Protein (Spo2029) From Silicibacter Pomeroyi
Length = 274
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 61 DRAYLFAFLLSSRLFIKPHELLGRVIALCDVQQKLTDKTPH 101
D LF LS L PH L R IA + + TPH
Sbjct: 144 DSEVLFLLALSEGLEHDPHGALARAIARLEGLSRAHGTTPH 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.147 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,062,605
Number of Sequences: 62578
Number of extensions: 101869
Number of successful extensions: 203
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 9
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)