Query psy3929
Match_columns 120
No_of_seqs 72 out of 74
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 20:58:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ii0_A SOS-1, SON of sevenless 98.9 1.2E-09 4.1E-14 91.4 6.3 62 28-91 22-91 (490)
2 3ksy_A SOS-1, SON of sevenless 98.6 6.7E-08 2.3E-12 87.5 6.6 61 28-90 581-649 (1049)
3 4f7z_A RAP guanine nucleotide 98.6 1.1E-08 3.6E-13 89.8 1.1 54 39-92 487-545 (999)
4 3cf6_E RAP guanine nucleotide 77.7 1.1 3.7E-05 39.1 2.3 51 40-90 183-238 (694)
5 1y6x_A Phosphoribosyl-ATP pyro 20.1 29 0.00098 23.9 0.6 45 43-93 8-53 (93)
6 1gng_X Frattide, glycogen synt 18.2 61 0.0021 19.6 1.7 11 77-87 11-21 (39)
7 1yvw_A PRA-PH, phosphoribosyl- 17.0 1.9E+02 0.0063 20.5 4.3 50 42-96 2-51 (115)
8 4afj_X Proto-oncogene FRAT1; t 15.2 52 0.0018 18.9 0.8 11 77-87 2-12 (30)
9 1hv2_A Elongin C, ELC1; protei 15.1 22 0.00074 23.6 -1.0 18 78-95 50-67 (99)
10 1lyp_A CAP18; lipopolysacchari 14.2 83 0.0029 18.1 1.5 15 104-118 14-28 (32)
No 1
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S
Probab=98.92 E-value=1.2e-09 Score=91.41 Aligned_cols=62 Identities=27% Similarity=0.496 Sum_probs=52.3
Q ss_pred cCCcceeeecC--------CCCCcCHHHHHHHHccCCCCCccHHHHHHHHhhccCccChHHHHHHHHHHHHH
Q psy3929 28 RRSWALVYREG--------HLVSGTLDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVIALCDV 91 (120)
Q Consensus 28 ~~~~~LvY~dg--------~lvSGsLeaLI~hLvPT~dyypD~syiFaFLLssRLFI~PhELL~kv~q~C~~ 91 (120)
+....++|.++ .+.+|||++||++|++. .++|.+|+.+||++.|.|++|+|||+++++.|..
T Consensus 22 D~~~~ii~~~~~~~~~g~~~IkagTL~~LVe~Lt~~--~~~D~~f~~~FLlTyRsF~tp~eLL~~Li~Ry~~ 91 (490)
T 2ii0_A 22 DSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTYH--MYADPNFVRTFLTTYRSFCKPQELLSLIIERFEI 91 (490)
T ss_dssp CCTTTEEEC-------CCCCEEEECHHHHHHHHTCS--SSCCHHHHHHHHHHGGGTSCHHHHHHHHHHHHCC
T ss_pred CCCCCeEEecCCCCcCCCceeeecCHHHHHHHHccC--CCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHhc
Confidence 34556777654 57999999999999863 5789999999999999999999999999998864
No 2
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=98.58 E-value=6.7e-08 Score=87.53 Aligned_cols=61 Identities=28% Similarity=0.491 Sum_probs=52.8
Q ss_pred cCCcceeeecC--------CCCCcCHHHHHHHHccCCCCCccHHHHHHHHhhccCccChHHHHHHHHHHHH
Q psy3929 28 RRSWALVYREG--------HLVSGTLDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVIALCD 90 (120)
Q Consensus 28 ~~~~~LvY~dg--------~lvSGsLeaLI~hLvPT~dyypD~syiFaFLLssRLFI~PhELL~kv~q~C~ 90 (120)
+....++|.++ .+.+|||++||+||++ ..++|.+|+.+||++.|.|++|.+||.++++.+.
T Consensus 581 d~~~~i~~~~~~~~~~~~~~IkagTL~~LVe~Lt~--~~~~D~~f~~~FLlTyRsF~tp~elL~lLi~Ry~ 649 (1049)
T 3ksy_A 581 DSEENIIFEENMQPKAGIPIIKAGTVIKLIERLTY--HMYADPNFVRTFLTTYRSFCKPQELLSLIIERFE 649 (1049)
T ss_dssp CCTTTEEECSSSCSSCCSCCEEEECHHHHHHHHTC--SSCCCHHHHHHHHHSCTTTSCHHHHHHHHHHHHC
T ss_pred CCCcceEEeccCCCCCCcceeeccCHHHHHHHHcc--ccCCCHHHHHHHHHHhhccCCHHHHHHHHHHHhc
Confidence 45567788753 4789999999999976 4679999999999999999999999999998874
No 3
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=98.57 E-value=1.1e-08 Score=89.82 Aligned_cols=54 Identities=22% Similarity=0.349 Sum_probs=47.1
Q ss_pred CCCCcCHHHHHHHHccCC-----CCCccHHHHHHHHhhccCccChHHHHHHHHHHHHHH
Q psy3929 39 HLVSGTLDALIQHIVPTI-----DYYPDRAYLFAFLLSSRLFIKPHELLGRVIALCDVQ 92 (120)
Q Consensus 39 ~lvSGsLeaLI~hLvPT~-----dyypD~syiFaFLLssRLFI~PhELL~kv~q~C~~q 92 (120)
.+++||+|.||+||+.+. .++||.+|+.+|||+.|.|++|+|||.++++.++.+
T Consensus 487 ~v~~gT~ekLie~L~~~~~~~~~~~~~~~~f~~~FLlTyr~F~t~~~ll~~Li~r~~~~ 545 (999)
T 4f7z_A 487 TVMSGTPEKILEHFLETIRLEPSLNEATDSVLNDFVMMHCVFMPNTQLCPALVAHYHAQ 545 (999)
T ss_dssp EEEEECHHHHHHHHHHHCCCCTTSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCC
T ss_pred EEeecCHHHHHHHHhcccccCcccccchhhHHHHHHHhccccCCcHHHHHHHHHHHcCC
Confidence 468999999999999653 345677899999999999999999999999998753
No 4
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=77.66 E-value=1.1 Score=39.13 Aligned_cols=51 Identities=24% Similarity=0.434 Sum_probs=42.1
Q ss_pred CCCcCHHHHHHHHccCCCCCc-----cHHHHHHHHhhccCccChHHHHHHHHHHHH
Q psy3929 40 LVSGTLDALIQHIVPTIDYYP-----DRAYLFAFLLSSRLFIKPHELLGRVIALCD 90 (120)
Q Consensus 40 lvSGsLeaLI~hLvPT~dyyp-----D~syiFaFLLssRLFI~PhELL~kv~q~C~ 90 (120)
..+|+-+.+..+|+-...-++ +..|+-.|+|+.|.|+++.+++.++.+...
T Consensus 183 ~l~~~~erL~~~LL~~~~ld~~~~~~~~~~~~dflLTh~~fm~~~~~~~~ll~~~~ 238 (694)
T 3cf6_E 183 VMSGTPEKILEHFLETIRLEPSLNEATDSVLNDFVMMHCVFMPNTQLCPALVAHYH 238 (694)
T ss_dssp EEEECHHHHHHHHHHTCCCCGGGHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred hhcccHHHHHHHHHHhcCCCccccccchhhhhhhhheehhhcCcHHHHHHHHHHhc
Confidence 358899999999986643333 479999999999999999999999988654
No 5
>1y6x_A Phosphoribosyl-ATP pyrophosphatase; helical bundle, histidine, hydrolase, ST genomics, PSI, protein structure initiative; 1.25A {Mycobacterium tuberculosis} SCOP: a.204.1.4 PDB: 3c90_X
Probab=20.10 E-value=29 Score=23.87 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=33.9
Q ss_pred cCHHHHHHHHccCCCCCccHHHHHHHHhhccCccC-hHHHHHHHHHHHHHHh
Q psy3929 43 GTLDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIK-PHELLGRVIALCDVQQ 93 (120)
Q Consensus 43 GsLeaLI~hLvPT~dyypD~syiFaFLLssRLFI~-PhELL~kv~q~C~~qq 93 (120)
+.|+.|-+.+.-.....|+.||+- +||-+ ++-++.||..-+.+-=
T Consensus 8 ~~l~~L~~~I~~Rk~~~pe~SYT~------~L~~~G~~ki~kKvgEEA~E~i 53 (93)
T 1y6x_A 8 KTFEDLFAELGDRARTRPADSTTV------AALDGGVHALGKKLLEEAGEVW 53 (93)
T ss_dssp CSHHHHHHHHHHHHHHCCTTCHHH------HHHHTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCCcHHH------HHHHCcHHHHHHHHHHHHHHHH
Confidence 678888888887777789999974 44443 7889999987776633
No 6
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=18.17 E-value=61 Score=19.63 Aligned_cols=11 Identities=36% Similarity=0.809 Sum_probs=9.2
Q ss_pred ChHHHHHHHHH
Q psy3929 77 KPHELLGRVIA 87 (120)
Q Consensus 77 ~PhELL~kv~q 87 (120)
.||+||++++.
T Consensus 11 dP~~lLQ~Llr 21 (39)
T 1gng_X 11 DPHRLLQQLVL 21 (39)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 59999988875
No 7
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine biosynthesis, structural genomics, PSI, protein structure initiative; 2.60A {Bacillus cereus} SCOP: a.204.1.4
Probab=17.01 E-value=1.9e+02 Score=20.52 Aligned_cols=50 Identities=10% Similarity=0.065 Sum_probs=34.8
Q ss_pred CcCHHHHHHHHccCCCCCccHHHHHHHHhhccCccChHHHHHHHHHHHHHHhhhc
Q psy3929 42 SGTLDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVIALCDVQQKLT 96 (120)
Q Consensus 42 SGsLeaLI~hLvPT~dyypD~syiFaFLLssRLFI~PhELL~kv~q~C~~qq~~~ 96 (120)
++.|+.|-+.+.-.....|+.||+-..+-. -++-++.||..-+.+---.+
T Consensus 2 ~~~L~~L~~~I~~Rk~~~pe~SYT~~L~~k-----G~~kI~kKvgEEA~E~iiAa 51 (115)
T 1yvw_A 2 ENAFKLLYKTIEERKGSPLPESYTNYLFSK-----GEDKILKKIGEECAEVIIAC 51 (115)
T ss_dssp --CHHHHHHHHHHHHHSCCTTSHHHHHHHH-----CHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCCcHHHHHHHC-----cHHHHHHHHHHHHHHHHHHH
Confidence 567888888888777778999997544322 37888999988777644443
No 8
>4afj_X Proto-oncogene FRAT1; transferase-peptide complex, kinase; HET: PTR SJJ; 1.98A {Homo sapiens} PDB: 3zrk_X* 3zrl_X* 3zrm_X*
Probab=15.18 E-value=52 Score=18.94 Aligned_cols=11 Identities=36% Similarity=0.809 Sum_probs=7.4
Q ss_pred ChHHHHHHHHH
Q psy3929 77 KPHELLGRVIA 87 (120)
Q Consensus 77 ~PhELL~kv~q 87 (120)
.||+||++++.
T Consensus 2 Dph~lLQqLl~ 12 (30)
T 4afj_X 2 DPHRLLQQLVL 12 (30)
T ss_dssp --CHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 48999998864
No 9
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=15.09 E-value=22 Score=23.60 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHhhh
Q psy3929 78 PHELLGRVIALCDVQQKL 95 (120)
Q Consensus 78 PhELL~kv~q~C~~qq~~ 95 (120)
....|.||++.|..+++.
T Consensus 50 ~~~iL~kVieyc~~h~~~ 67 (99)
T 1hv2_A 50 DSHILEKAVEYLNYNLKY 67 (99)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccc
Confidence 467899999999998854
No 10
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=14.18 E-value=83 Score=18.14 Aligned_cols=15 Identities=27% Similarity=0.352 Sum_probs=10.2
Q ss_pred HHHhhhhhhhhhhhh
Q psy3929 104 KELIRKYKYNLKFFL 118 (120)
Q Consensus 104 k~~~~~~~~ki~qlL 118 (120)
|+++++++.||--||
T Consensus 14 keklkkigqkiqgll 28 (32)
T 1lyp_A 14 KEKLKKIGQKIQGLL 28 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 677777777775544
Done!