RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3929
(120 letters)
>gnl|CDD|100121 cd06224, REM, Guanine nucleotide exchange factor for Ras-like
GTPases; N-terminal domain (RasGef_N), also called REM
domain (Ras exchanger motif). This domain is common in
nucleotide exchange factors for Ras-like small GTPases
and is typically found immediately N-terminal to the
RasGef (Cdc25-like) domain. REM contacts the GTPase and
is assumed to participate in the catalytic activity of
the exchange factor. Proteins with the REM domain
include Sos1 and Sos2, which relay signals from
tyrosine-kinase mediated signalling to Ras, RasGRP1-4,
RasGRF1,2, CNrasGEF, and RAP-specific nucleotide
exchange factors, to name a few.
Length = 122
Score = 46.6 bits (111), Expect = 1e-07
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 44 TLDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVIALCDVQQ 93
TL+ALI+H+ T D PD +++ FLL+ R F P ELL ++I ++
Sbjct: 1 TLEALIEHLTSTFDM-PDPSFVSTFLLTYRSFTTPTELLEKLIERYEIAP 49
>gnl|CDD|216026 pfam00618, RasGEF_N, RasGEF N-terminal motif. A subset of
guanine nucleotide exchange factor for Ras-like small
GTPases appear to possess this motif/domain N-terminal
to the RasGef (Cdc25-like) domain.
Length = 94
Score = 40.4 bits (95), Expect = 2e-05
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 40 LVSGTLDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVIALCDVQQK 94
+ GTL+AL++H+ T D D ++L FLL+ R F P ELL ++
Sbjct: 2 VKGGTLEALVEHLTST-DDMLDDSFLETFLLTYRSFTTPGELLELLLERFLSPPL 55
>gnl|CDD|214571 smart00229, RasGEFN, Guanine nucleotide exchange factor for
Ras-like GTPases; N-terminal motif. A subset of
guanine nucleotide exchange factor for Ras-like small
GTPases appear to possess this domain N-terminal to the
RasGef (Cdc25-like) domain. The recent crystal
structureof Sos shows that this domain is alpha-helical
and plays a "purely structural role" (Nature 394,
337-343).
Length = 127
Score = 36.9 bits (86), Expect = 5e-04
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 37 EGHLV-SGTLDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVIA 87
+G L+ GTL+ALI+H+ D +++ FLL+ R FI ELL ++
Sbjct: 1 DGGLIKGGTLEALIEHLTEA-FDKADPSFVETFLLTYRSFITTQELLQLLLY 51
>gnl|CDD|215247 PLN02448, PLN02448, UDP-glycosyltransferase family protein.
Length = 459
Score = 30.0 bits (68), Expect = 0.23
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 6 IIRLVKEEEDEEENERKRRRRRRRSWALVYREGHLVSGT----LDALIQHIVPTI 56
I LVK D E E K RRR + + R G+ LDA I+ I
Sbjct: 405 IAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQGR 459
>gnl|CDD|218693 pfam05687, DUF822, Plant protein of unknown function (DUF822).
This family consists of the N terminal regions of
several plant proteins of unknown function.
Length = 151
Score = 28.6 bits (64), Expect = 0.62
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 11 KEEEDEEENERKRRRRRR 28
K E EN ++R RRRR
Sbjct: 6 KPTWKERENNKRRERRRR 23
Score = 25.5 bits (56), Expect = 7.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 16 EEENERKRRRRRRR 29
+E E +RR RRR
Sbjct: 9 WKERENNKRRERRR 22
>gnl|CDD|218898 pfam06101, DUF946, Plant protein of unknown function (DUF946).
This family consists of several hypothetical proteins
from Arabidopsis thaliana and Oryza sativa. The function
of this family is unknown.
Length = 537
Score = 28.8 bits (65), Expect = 0.64
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 46 DALIQHIVPTIDYYPDRAYL 65
ALIQH PTI ++PD YL
Sbjct: 234 HALIQHYGPTIYFHPDEEYL 253
>gnl|CDD|224138 COG1217, TypA, Predicted membrane GTPase involved in stress
response [Signal transduction mechanisms].
Length = 603
Score = 28.7 bits (65), Expect = 0.75
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 2 ITPYIIRLVKEEEDEEENERKRRRRRR 28
+TP IRL K+ + ENERKR +R+
Sbjct: 579 VTPESIRLRKKILN--ENERKRAEKRK 603
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one C
subunit in the genome and that genome is lacking the F
subunit partner (also a thioredcxin reductase homolog)
that is usually found (TIGR03140).
Length = 555
Score = 28.2 bits (63), Expect = 0.94
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 11 KEEEDEEENERKRRRRRRRSWALVYREGHLVSGTLDALIQHIVPTIDYYPDRAYLFAFLL 70
+E E+EE E + A ++G L+ D+L Q +V + L FL
Sbjct: 319 EEYEEEEAKEASEASAAETTPAATTKKGSLLD---DSLRQQLVGIFGRLENPVTLLLFLD 375
Query: 71 SSRLFIKPHELLGRVIALCDVQQKLTDKTPH--GKKELIRKYK 111
S K EL + + +KL + + + E K
Sbjct: 376 GSNE--KSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPK 416
>gnl|CDD|220514 pfam10002, DUF2243, Predicted membrane protein (DUF2243). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 141
Score = 27.6 bits (62), Expect = 1.2
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 22 KRRRRRRRSWALVYREGHLVSGT-----LDALIQHIV---PTIDYYPDR-AYLFAFLLSS 72
+ RRRR W+ G L+ G +D +I H + + Y + + +L
Sbjct: 66 RADLRRRRPWSGRTLWGGLLLGWGLFNLVDGIIDHKILGIHHVRYGDNPLLWDLGWLAFG 125
Query: 73 RLFI 76
L +
Sbjct: 126 ALLL 129
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 27.7 bits (61), Expect = 1.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 14 EDEEENERKRRRRRR 28
+DEEE R+RRRR R
Sbjct: 2 DDEEEAARERRRRER 16
>gnl|CDD|115789 pfam07158, MatC_N, Dicarboxylate carrier protein MatC N-terminus.
This family represents the N-terminal region of the
bacterial dicarboxylate carrier protein MatC. The MatC
protein is an integral membrane protein that could
function as a malonate carrier.
Length = 149
Score = 27.4 bits (61), Expect = 1.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 41 VSGTLDALIQHIVPTIDYYPDRAYLFAFLLSSRL 74
+GT+D L+ H V + FLL++ L
Sbjct: 72 TNGTIDWLVHHAVRAVRGRVGAIPWVMFLLAALL 105
>gnl|CDD|226859 COG4452, CreD, Inner membrane protein involved in colicin E2
resistance [Defense mechanisms].
Length = 443
Score = 27.4 bits (61), Expect = 2.0
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 1 MITPYIIRLVKEEEDEEENERKRRRRRRRSWALVYREGHLVSGTLD 46
++ P I E E + R+R + E +V+G +
Sbjct: 55 LVGPLIAIPYTELYTVEVEGKTVVRKRSF-IHFILPESLMVTGNMK 99
>gnl|CDD|220550 pfam10070, DUF2309, Uncharacterized protein conserved in bacteria
(DUF2309). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 783
Score = 27.6 bits (62), Expect = 2.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 9 LVKEEEDEEENERKRRRRRRRSWA 32
VKE DE+E +RRRRR A
Sbjct: 381 RVKEGGDEDEAAAYDQRRRRRLRA 404
>gnl|CDD|221586 pfam12457, TIP_N, Tuftelin interacting protein N terminal. This
domain family is found in eukaryotes, and is typically
between 99 and 114 amino acids in length. The family is
found in association with pfam08697, pfam01585. There
are two completely conserved residues (G and F) that
may be functionally important. TIP is involved in
enamel assembly by interacting with one of the major
proteins responsible for biomineralisation of enamel -
tuftelin.
Length = 106
Score = 26.6 bits (59), Expect = 2.3
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 13 EEDEEENERKRRRRRRRSW 31
++D+++ +RR R RR
Sbjct: 41 DDDDDDEGERRRGRGRRRS 59
Score = 25.8 bits (57), Expect = 4.5
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 12 EEEDEEENERKRRRRRRRS 30
+++D++E ER+R R RRRS
Sbjct: 41 DDDDDDEGERRRGRGRRRS 59
>gnl|CDD|217301 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals and numerous
prevalence studies have raised questions about its role
in unexplained hepatitis. ORF1 is a large 750 residue
protein. The N-terminal half of this protein
corresponds to the capsid protein.
Length = 525
Score = 27.2 bits (61), Expect = 2.4
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 21 RKRRRRRRRSWALVYR 36
R+R RRRRR R
Sbjct: 31 RRRVRRRRRGRRRRRR 46
>gnl|CDD|235390 PRK05289, PRK05289, UDP-N-acetylglucosamine acyltransferase;
Provisional.
Length = 262
Score = 26.2 bits (59), Expect = 4.0
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 20 ERKRRRRRRRSWALVYREGHLVSGTLDALIQHIVPTIDYYPDRAYLFAFLLSS-RLFIKP 78
R+ RR++ L+YR G + L+ L + + P+ + F+ SS R I+P
Sbjct: 205 SREEIHALRRAYKLLYRSGLTLEEALEELAEEYPDS----PEVKEILDFIESSKRGIIRP 260
>gnl|CDD|204616 pfam11240, DUF3042, Protein of unknown function (DUF3042). This
family of proteins with unknown function appears to be
restricted to Firmicutes.
Length = 54
Score = 25.0 bits (55), Expect = 4.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 6 IIRLVKEEEDEEENERKRRRRRRRS 30
+I ++E+E+ E RK+ R+R S
Sbjct: 30 VIEPIEEKEEFIEENRKKAARKRVS 54
>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like,
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and
other MDR family members. This subgroup of the medium
chain dehydrogenases/reductase (MDR)/zinc-dependent
alcohol dehydrogenase-like family has members identified
as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A
dehydrogenase and alcohol dehydrogenases. The medium
chain dehydrogenases/reductase (MDR)/zinc-dependent
alcohol dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability.
Length = 277
Score = 26.1 bits (58), Expect = 4.5
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 23 RRRRRRRSWALVYREGHLVSGTLDALIQHIVP 54
R + L L G L+ALI H VP
Sbjct: 229 EARNLEEALDL------LAEGRLEALITHRVP 254
>gnl|CDD|182045 PRK09718, PRK09718, hypothetical protein; Validated.
Length = 512
Score = 26.2 bits (57), Expect = 5.1
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 45 LDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVIALCDVQQKLTDKTPHGKK 104
LD I +I+ ID PD A + +L+ +L ++ L + +K+ P+ K
Sbjct: 258 LDGYINNIIKMIDTLPDNAMILKSVLAVKLVMQLKILNIVNKNFIENMKKIFSHCPYIKD 317
Query: 105 ELIRKY 110
+IR Y
Sbjct: 318 PIIRSY 323
>gnl|CDD|238009 cd00052, EH, Eps15 homology domain; found in proteins implicated
in endocytosis, vesicle transport, and signal
transduction. The alignment contains a pair of EF-hand
motifs, typically one of them is canonical and binds to
Ca2+, while the other may not bind to Ca2+. A
hydrophobic binding pocket is formed by residues from
both EF-hand motifs. The EH domain binds to proteins
containing NPF (class I), [WF]W or SWG (class II), or
H[TS]F (class III) sequence motifs.
Length = 67
Score = 24.9 bits (55), Expect = 5.3
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 67 AFLLSSRLFIKPHELLGRVIALCDVQQK 94
FL S L P +L ++ L D +
Sbjct: 23 PFLGKSGL---PRSVLAQIWDLADTDKD 47
>gnl|CDD|197477 smart00027, EH, Eps15 homology domain. Pair of EF hand motifs
that recognise proteins containing Asn-Pro-Phe (NPF)
sequences.
Length = 96
Score = 25.3 bits (56), Expect = 5.6
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 67 AFLLSSRLFIKPHELLGRVIALCDVQQK 94
LL S L P LL ++ L D+
Sbjct: 34 PILLKSGL---PQTLLAKIWNLADIDND 58
>gnl|CDD|221115 pfam11456, DUF3019, Protein of unknown function (DUF3019). This is
a bacterial family of uncharacterized proteins.
Length = 102
Score = 25.3 bits (56), Expect = 5.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 20 ERKRRRRRRRSWAL 33
K+RRRRR W+L
Sbjct: 89 SPKKRRRRRNPWSL 102
>gnl|CDD|215003 smart01060, Catalase, Catalases are antioxidant enzymes that
catalyse the conversion of hydrogen peroxide to water
and molecular oxygen, serving to protect cells from its
toxic effects. Hydrogen peroxide is produced as a
consequence of oxidative cellular metabolism and can be
converted to the highly reactive hydroxyl radical via
transition metals, this radical being able to damage a
wide variety of molecules within a cell, leading to
oxidative stress and cell death. Catalases act to
neutralise hydrogen peroxide toxicity, and are produced
by all aerobic organisms ranging from bacteria to man.
Most catalases are mono-functional, haem-containing
enzymes, although there are also bifunctional
haem-containing peroxidase/catalases that are closely
related to plant peroxidases, and non-haem,
manganese-containing catalases that are found in
bacteria.
Length = 373
Score = 25.9 bits (58), Expect = 6.0
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 6/26 (23%)
Query: 50 QHIVPTIDYYPDRAYLFAFLLSSRLF 75
++VP I++ PD+ +L RLF
Sbjct: 307 SNLVPGIEFSPDK------MLQGRLF 326
>gnl|CDD|219939 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C
terminus. The C terminus of the plasma membrane Nha1
antiporter plays an important role in the immediate
cell response to hypo-osmotic shock which prevents an
execessive loss of ions and water. This domain is found
with pfam00999.
Length = 430
Score = 25.9 bits (57), Expect = 6.7
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 8 RLVKEEE-----DEEENERKRRRRRRR 29
R V++++ + +RRRR+RR
Sbjct: 56 RRVRKKKKGSRAGRRASSLRRRRRQRR 82
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 26.0 bits (57), Expect = 6.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 11 KEEEDEEENERKRRRRRRR 29
K+++ EEE RKR+ R R+
Sbjct: 394 KQDDTEEEERRKRQERERQ 412
>gnl|CDD|236485 PRK09368, PRK09368, gas vesicle synthesis-like protein; Reviewed.
Length = 140
Score = 25.4 bits (56), Expect = 7.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 11 KEEEDEEENERKRRRRRRRS 30
+ ++EEE R+R R R+
Sbjct: 115 RGSDEEEERRRERPRPRKAP 134
>gnl|CDD|220245 pfam09444, MRC1, MRC1-like domain. This putative domain is found
to be the most conserved region in mediator of
replication checkpoint protein 1.
Length = 145
Score = 25.4 bits (56), Expect = 7.3
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 12 EEEDEEENERKRRRRRRRSWALVYREGHLVSGTLDALIQH 51
+ EDE R+ +RR R+ L G LD L ++
Sbjct: 101 DSEDELLQRRRLKRRELALM----RQRLLEDGDLDKLAKN 136
>gnl|CDD|237747 PRK14530, PRK14530, adenylate kinase; Provisional.
Length = 215
Score = 25.5 bits (56), Expect = 7.7
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 21/58 (36%)
Query: 8 RLVKEEEDEEENERKRRRRRRRSWALVYREGHLVSGTLDALIQHIVPTIDYYPDRAYL 65
L++ ++D EE R+R V+ E + P I++Y D+ L
Sbjct: 155 ELIQRDDDTEETVRERLD--------VFEE-------------NTEPVIEHYRDQGVL 191
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 25.6 bits (56), Expect = 7.9
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 9 LVKEEEDEEENERKRRRRRRR 29
EE+ EE E+++R+R ++
Sbjct: 280 RSDSEEETEEKEKEKRKRLKK 300
>gnl|CDD|218749 pfam05788, Orbi_VP1, Orbivirus RNA-dependent RNA polymerase (VP1).
This family consists of the RNA-dependent RNA polymerase
protein VP1 from the Orbiviruses. VP1 may have both
enzymatic and structural roles in the virus life cycle.
Length = 1301
Score = 25.5 bits (56), Expect = 8.3
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 8 RLVKEEEDEEENERKRRRRRRR----------SWALVYREGHLVSGTLDALIQHIVPTID 57
VK + D EE ER+ + R+++ SW ++ TL + ++
Sbjct: 43 HGVKYKRDAEEIEREIKMRKKQLYGLPVLRESSWEELFDIEERSEDTLKIYVNSVLDLEK 102
Query: 58 YYPDRAYL 65
P+ +L
Sbjct: 103 LDPEEEFL 110
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 25.6 bits (56), Expect = 8.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 16 EEENERKRRRRRRRSW 31
E E E+K R R+ W
Sbjct: 333 EREKEQKEREGRQSEW 348
>gnl|CDD|189027 cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. Exonuclease-1 (EXO1) is involved
in multiple, eukaryotic DNA metabolic pathways,
including DNA replication processes (5' flap DNA
endonuclease activity and double stranded DNA
5'-exonuclease activity), DNA repair processes (DNA
mismatch repair (MMR) and post-replication repair
(PRR)), recombination, and telomere integrity. EXO1
functions in the MMS2 error-free branch of the PRR
pathway in the maintenance and repair of stalled
replication forks. Studies also suggest that EXO1 plays
both structural and catalytic roles during MMR-mediated
mutation avoidance. EXO1 belongs to the FEN1-EXO1-like
family of structure-specific, 5' nucleases. These
nucleases contain a PIN (PilT N terminus) domain with a
helical arch/clamp region (I domain) of variable length
(approximately 43 residues in EXO1 PIN domains) and a
H3TH (helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region. Both the H3TH domain
(not included here) and the helical arch/clamp region
are involved in DNA binding. Nucleases within this group
also have a carboxylate-rich active site that is
involved in binding essential divalent metal ion
cofactors (Mg2+/Mn2+). EXO1 nucleases also have
C-terminal Mlh1- and Msh2-binding domains which allow
interaction with MMR and PRR proteins, respectively.
Length = 210
Score = 25.1 bits (56), Expect = 9.6
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 16 EEENERKRRRRRRRSWALVYRE 37
E ER+ RR AL
Sbjct: 87 GTEEERRERREENLEKALELLR 108
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.144 0.428
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,759,361
Number of extensions: 632952
Number of successful extensions: 2026
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1931
Number of HSP's successfully gapped: 110
Length of query: 120
Length of database: 10,937,602
Length adjustment: 83
Effective length of query: 37
Effective length of database: 7,256,220
Effective search space: 268480140
Effective search space used: 268480140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.0 bits)