RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3929
         (120 letters)



>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 481

 Score = 53.3 bits (127), Expect = 5e-10
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 42 SGTLDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVIALCDVQQ 93
          +GT+  LI+ +  T   Y D  ++  FL + R F KP ELL  +I   ++ +
Sbjct: 38 AGTVIKLIERL--TYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPE 87


>d1v5da_ a.102.1.2 (A:) Chitosanase {Bacillus sp., strain k17
           [TaxId: 1409]}
          Length = 386

 Score = 26.9 bits (59), Expect = 0.72
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 57  DYYPDRAYLFAFLLSSRLFIKP 78
            Y+ D   L   L  +  + KP
Sbjct: 363 RYFSDSYNLLTMLFITGNWWKP 384


>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa
          subunit, Orc1p {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 217

 Score = 26.1 bits (57), Expect = 0.96
 Identities = 5/22 (22%), Positives = 12/22 (54%)

Query: 9  LVKEEEDEEENERKRRRRRRRS 30
          +  +E+    +  ++R RRR +
Sbjct: 17 ITTDEQGNIIDGGQKRLRRRGA 38



 Score = 24.5 bits (53), Expect = 3.6
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 11 KEEEDEEENERKRRRRRRRS 30
           E+ +  +  +KR RRR   
Sbjct: 20 DEQGNIIDGGQKRLRRRGAK 39


>d2bg1a1 e.3.1.1 (A:337-789) Penicillin-binding protein 1b,
          transpeptidase domain {Streptococcus pneumoniae [TaxId:
          1313]}
          Length = 453

 Score = 25.4 bits (54), Expect = 2.0
 Identities = 9/49 (18%), Positives = 21/49 (42%)

Query: 5  YIIRLVKEEEDEEENERKRRRRRRRSWALVYREGHLVSGTLDALIQHIV 53
          Y+ +       E +NE  ++  R  +   +   G+ ++ T+D  I   +
Sbjct: 18 YLAQRDNVSAKELKNEATQKFYRDLAAKEIENGGYKITTTIDQKIHSAM 66


>d1kwfa_ a.102.1.2 (A:) CelA cellulase {Clostridium thermocellum
           [TaxId: 1515]}
          Length = 363

 Score = 25.4 bits (55), Expect = 2.1
 Identities = 6/22 (27%), Positives = 8/22 (36%)

Query: 57  DYYPDRAYLFAFLLSSRLFIKP 78
            YY +   L   L  +  F  P
Sbjct: 338 GYYGNSLRLLTLLYITGNFPNP 359


>d1i6aa_ c.94.1.1 (A:) Hydrogen peroxide-inducible genes LysR-type
           activator OxyR, regulatory domain {Escherichia coli
           [TaxId: 562]}
          Length = 212

 Score = 25.2 bits (53), Expect = 2.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 28  RRSWALVYREGHLVSGTLDALIQHIVPTIDYYPD 61
           RR+  LVYR G  +    + L + I   +D + D
Sbjct: 179 RRTIGLVYRPGSPLRSRYEQLAEAIRARMDGHFD 212


>d1x1ia1 a.102.3.2 (A:26-386) Xanthan lyase {Bacillus sp. gl1
           [TaxId: 84635]}
          Length = 361

 Score = 24.1 bits (52), Expect = 5.6
 Identities = 9/75 (12%), Positives = 21/75 (28%), Gaps = 1/75 (1%)

Query: 43  GTLDALIQHIVPTIDYYPDRAYLFAFLLSSRLFIKPHELLGRVIALCDVQQKLTDKTPHG 102
             L          +D    R Y++  L  +      + +  R+  +      +     +G
Sbjct: 33  DKLAQDANDYWEDMDLSSSRTYIWYALRGNGTSDNVNAVYERLRTMALAATTVGSSL-YG 91

Query: 103 KKELIRKYKYNLKFF 117
             +L       L + 
Sbjct: 92  NADLKEDILDALDWL 106


>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 97

 Score = 23.3 bits (50), Expect = 6.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 8  RLVKEEEDEEENERKRRRRRR 28
           L  + ED  +N    RRR+R
Sbjct: 77 TLDPQSEDMFDNGSFLRRRKR 97


>d2pq6a1 c.87.1.10 (A:8-480) (Iso)flavonoid glycosyltransferase
           {Medicago truncatula [TaxId: 3880]}
          Length = 473

 Score = 24.0 bits (50), Expect = 6.8
 Identities = 7/50 (14%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 6   IIRLVKE--EEDEEENERKRRRRRRRSWALVYREGHLVSGTLDALIQHIV 53
           + +L+ E    D+ +  +++    ++      R G      L+ +I+ ++
Sbjct: 422 LAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 471


>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg)
          {Thermus thermophilus [TaxId: 274]}
          Length = 89

 Score = 22.9 bits (49), Expect = 9.0
 Identities = 5/43 (11%), Positives = 12/43 (27%)

Query: 21 RKRRRRRRRSWALVYREGHLVSGTLDALIQHIVPTIDYYPDRA 63
           +  +   R    +  +  L +G  +      +      P R 
Sbjct: 15 FRGLKESARPLKALLLDQRLAAGVGNIYADEALFRARLSPFRP 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.144    0.428 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 482,985
Number of extensions: 21862
Number of successful extensions: 141
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 24
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.2 bits)