Query psy3930
Match_columns 299
No_of_seqs 335 out of 2920
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 21:00:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08036 LARP_5 La RNA-binding 100.0 3.4E-32 7.3E-37 187.8 4.6 68 1-68 8-75 (75)
2 cd08035 LARP_4 La RNA-binding 100.0 1.3E-31 2.9E-36 186.6 3.6 68 1-68 8-75 (75)
3 cd08033 LARP_6 La RNA-binding 100.0 2.1E-30 4.6E-35 183.2 3.4 68 1-68 8-77 (77)
4 cd08032 LARP_7 La RNA-binding 100.0 3.6E-30 7.8E-35 183.8 3.4 68 1-68 13-82 (82)
5 cd08031 LARP_4_5_like La RNA-b 100.0 3.6E-30 7.9E-35 181.1 2.7 68 1-68 8-75 (75)
6 cd08037 LARP_1 La RNA-binding 100.0 1.9E-29 4E-34 175.4 2.8 66 1-68 8-73 (73)
7 cd08038 LARP_2 La RNA-binding 100.0 2.4E-29 5.3E-34 174.8 3.3 66 1-68 8-73 (73)
8 smart00715 LA Domain in the RN 100.0 2.4E-29 5.1E-34 180.0 2.9 69 1-69 11-80 (80)
9 cd08029 LA_like_fungal La-moti 99.9 4E-29 8.6E-34 176.7 3.1 67 1-68 8-76 (76)
10 cd08028 LARP_3 La RNA-binding 99.9 5.7E-29 1.2E-33 178.1 3.3 68 1-68 12-82 (82)
11 cd08034 LARP_1_2 La RNA-bindin 99.9 8.6E-29 1.9E-33 173.0 3.4 66 1-68 8-73 (73)
12 cd08030 LA_like_plant La-motif 99.9 2.5E-28 5.5E-33 176.9 3.4 68 1-68 9-90 (90)
13 cd07323 LAM LA motif RNA-bindi 99.9 4.4E-28 9.5E-33 171.8 3.4 68 1-68 8-75 (75)
14 KOG1855|consensus 99.9 1.8E-26 4E-31 206.0 10.1 164 1-279 148-326 (484)
15 PF05383 La: La domain; Inter 99.9 4.8E-24 1E-28 144.9 -0.3 54 1-54 5-61 (61)
16 KOG4213|consensus 99.8 5.1E-22 1.1E-26 158.5 1.0 134 1-155 21-162 (205)
17 KOG2591|consensus 99.8 3.4E-20 7.3E-25 170.5 6.9 145 1-277 104-250 (684)
18 TIGR01659 sex-lethal sex-letha 99.8 1.7E-19 3.6E-24 164.9 10.6 118 158-278 157-274 (346)
19 TIGR01645 half-pint poly-U bin 99.7 6.7E-18 1.5E-22 162.6 10.3 117 158-277 157-282 (612)
20 cd08032 LARP_7 La RNA-binding 99.7 2.8E-18 6.1E-23 122.6 3.8 80 105-184 1-82 (82)
21 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.5E-17 3.3E-22 153.4 9.6 81 197-280 270-350 (352)
22 KOG0148|consensus 99.7 1.5E-17 3.3E-22 141.3 8.7 113 158-283 112-238 (321)
23 PLN03134 glycine-rich RNA-bind 99.7 1.6E-16 3.5E-21 127.8 12.2 84 194-280 32-115 (144)
24 KOG0145|consensus 99.7 5.9E-17 1.3E-21 137.0 8.3 117 158-277 91-207 (360)
25 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.1E-16 2.3E-21 147.7 9.2 115 158-275 53-167 (352)
26 cd08036 LARP_5 La RNA-binding 99.7 1.4E-17 3E-22 115.3 2.1 73 111-183 2-74 (75)
27 cd08035 LARP_4 La RNA-binding 99.7 2.9E-17 6.2E-22 114.7 2.6 73 111-183 2-74 (75)
28 cd08033 LARP_6 La RNA-binding 99.7 4.1E-17 9E-22 115.5 2.9 74 111-184 2-77 (77)
29 cd08031 LARP_4_5_like La RNA-b 99.7 4.8E-17 1E-21 114.6 2.8 73 111-183 2-74 (75)
30 cd08028 LARP_3 La RNA-binding 99.7 8.3E-17 1.8E-21 115.4 3.9 77 108-184 3-82 (82)
31 smart00715 LA Domain in the RN 99.6 6.6E-17 1.4E-21 115.8 3.2 77 108-184 2-79 (80)
32 cd08037 LARP_1 La RNA-binding 99.6 8.3E-17 1.8E-21 112.1 2.7 71 111-181 2-72 (73)
33 cd08038 LARP_2 La RNA-binding 99.6 9.2E-17 2E-21 111.9 2.7 71 111-181 2-72 (73)
34 cd08029 LA_like_fungal La-moti 99.6 2.3E-16 5E-21 111.6 2.6 73 111-184 2-76 (76)
35 TIGR01628 PABP-1234 polyadenyl 99.6 8.4E-16 1.8E-20 150.4 7.1 114 158-275 50-163 (562)
36 TIGR01628 PABP-1234 polyadenyl 99.6 1.3E-15 2.8E-20 149.1 8.3 116 158-277 227-362 (562)
37 TIGR01622 SF-CC1 splicing fact 99.6 2.1E-15 4.5E-20 144.1 9.0 115 158-276 139-263 (457)
38 cd08034 LARP_1_2 La RNA-bindin 99.6 3.2E-16 6.9E-21 109.7 2.4 69 111-179 2-70 (73)
39 cd07323 LAM LA motif RNA-bindi 99.6 1.1E-15 2.4E-20 108.4 2.4 74 111-184 2-75 (75)
40 cd08030 LA_like_plant La-motif 99.6 1.1E-15 2.4E-20 111.1 2.2 74 111-184 3-90 (90)
41 TIGR01642 U2AF_lg U2 snRNP aux 99.6 4.4E-14 9.5E-19 136.7 14.0 121 146-277 226-373 (509)
42 PF00076 RRM_1: RNA recognitio 99.5 1.8E-14 3.8E-19 101.1 7.5 70 199-272 1-70 (70)
43 COG5193 LHP1 La protein, small 99.5 6.1E-15 1.3E-19 131.8 5.9 169 1-170 79-331 (438)
44 KOG0121|consensus 99.5 5.5E-14 1.2E-18 107.0 8.0 81 193-276 33-113 (153)
45 KOG0122|consensus 99.5 7.9E-14 1.7E-18 117.3 8.9 79 194-275 187-265 (270)
46 KOG0109|consensus 99.5 1.9E-14 4.1E-19 123.7 5.0 138 130-282 5-153 (346)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 9.3E-14 2E-18 133.4 8.8 120 158-282 321-479 (481)
48 KOG0144|consensus 99.5 2.1E-14 4.6E-19 129.3 3.9 122 146-277 79-204 (510)
49 TIGR01659 sex-lethal sex-letha 99.5 2.6E-13 5.6E-18 124.3 10.7 80 193-275 104-183 (346)
50 KOG0124|consensus 99.5 2.4E-13 5.2E-18 120.1 8.8 129 145-276 132-287 (544)
51 KOG0127|consensus 99.5 2.6E-13 5.6E-18 125.5 9.4 84 196-279 292-378 (678)
52 KOG0113|consensus 99.5 3.2E-13 7E-18 116.5 9.3 95 193-290 98-195 (335)
53 KOG0149|consensus 99.4 2E-13 4.4E-18 114.4 7.7 78 195-276 11-88 (247)
54 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 2.8E-13 6.1E-18 130.1 9.8 113 158-275 46-170 (481)
55 PLN03120 nucleic acid binding 99.4 6.5E-13 1.4E-17 114.8 11.0 82 196-284 4-85 (260)
56 PF14259 RRM_6: RNA recognitio 99.4 4E-13 8.7E-18 94.5 7.6 70 199-272 1-70 (70)
57 KOG0126|consensus 99.4 3.3E-14 7.1E-19 114.5 0.8 86 193-281 32-117 (219)
58 TIGR01648 hnRNP-R-Q heterogene 99.4 1.5E-12 3.2E-17 125.6 11.3 111 160-274 19-133 (578)
59 KOG0148|consensus 99.4 2.4E-13 5.3E-18 115.8 4.8 75 198-279 64-138 (321)
60 TIGR01648 hnRNP-R-Q heterogene 99.4 4.4E-12 9.5E-17 122.4 13.9 115 146-278 185-306 (578)
61 KOG0107|consensus 99.4 1.7E-12 3.6E-17 104.2 8.8 75 196-278 10-84 (195)
62 PF05383 La: La domain; Inter 99.4 4.2E-14 9.1E-19 96.1 -0.6 58 113-170 1-61 (61)
63 PLN03121 nucleic acid binding 99.4 4E-12 8.7E-17 108.2 10.8 81 194-281 3-83 (243)
64 KOG0131|consensus 99.4 2.3E-12 5E-17 104.0 8.8 120 146-276 54-174 (203)
65 TIGR01645 half-pint poly-U bin 99.4 1.5E-12 3.2E-17 125.9 9.1 79 194-275 105-183 (612)
66 KOG4213|consensus 99.4 1.4E-12 3E-17 104.7 6.8 146 107-257 11-169 (205)
67 KOG4207|consensus 99.4 1.8E-12 3.9E-17 106.6 7.3 78 196-276 13-90 (256)
68 KOG0117|consensus 99.4 7.4E-12 1.6E-16 113.5 11.7 117 160-278 44-163 (506)
69 KOG0117|consensus 99.3 1E-11 2.3E-16 112.5 12.5 108 158-276 216-328 (506)
70 KOG0123|consensus 99.3 1.8E-11 3.9E-16 112.9 13.6 129 131-275 14-149 (369)
71 KOG0130|consensus 99.3 4.8E-12 1E-16 97.3 8.0 84 193-279 69-152 (170)
72 KOG0127|consensus 99.3 4.2E-12 9.2E-17 117.6 8.8 116 160-279 57-196 (678)
73 smart00362 RRM_2 RNA recogniti 99.3 9.7E-12 2.1E-16 86.5 8.5 71 198-273 1-71 (72)
74 KOG0147|consensus 99.3 1.6E-12 3.5E-17 120.6 5.6 118 158-279 229-358 (549)
75 TIGR01642 U2AF_lg U2 snRNP aux 99.3 4.2E-12 9.2E-17 122.9 7.9 115 158-275 345-498 (509)
76 KOG0144|consensus 99.3 7.2E-12 1.6E-16 113.1 7.7 88 188-275 26-113 (510)
77 PLN03213 repressor of silencin 99.3 1.6E-11 3.5E-16 112.5 9.5 76 194-276 8-85 (759)
78 smart00360 RRM RNA recognition 99.3 2.3E-11 5E-16 84.2 8.2 70 201-273 1-70 (71)
79 KOG0105|consensus 99.2 3.3E-11 7.2E-16 97.5 8.7 78 195-278 5-82 (241)
80 TIGR01622 SF-CC1 splicing fact 99.2 3.7E-11 8.1E-16 114.8 10.2 80 193-276 86-165 (457)
81 KOG0114|consensus 99.2 6.3E-11 1.4E-15 87.1 8.6 76 194-275 16-91 (124)
82 KOG0125|consensus 99.2 3.2E-11 7E-16 105.6 8.0 81 194-279 94-174 (376)
83 COG0724 RNA-binding proteins ( 99.2 6.1E-11 1.3E-15 104.0 9.6 79 196-277 115-193 (306)
84 KOG0111|consensus 99.2 2.2E-11 4.9E-16 101.0 5.5 80 193-275 7-86 (298)
85 KOG0131|consensus 99.2 2.6E-11 5.6E-16 98.0 5.4 80 195-277 8-87 (203)
86 KOG0108|consensus 99.2 4.5E-11 9.7E-16 111.4 7.9 80 197-279 19-98 (435)
87 KOG1855|consensus 99.2 1.5E-11 3.3E-16 111.0 4.4 119 106-232 137-264 (484)
88 cd00590 RRM RRM (RNA recogniti 99.2 2.3E-10 4.9E-15 79.9 9.3 73 198-274 1-73 (74)
89 KOG0145|consensus 99.2 7.5E-11 1.6E-15 100.3 7.7 87 193-286 38-124 (360)
90 KOG0110|consensus 99.2 7E-11 1.5E-15 112.7 7.8 115 159-276 569-690 (725)
91 KOG0146|consensus 99.1 5.1E-11 1.1E-15 101.6 5.6 87 192-281 281-367 (371)
92 smart00361 RRM_1 RNA recogniti 99.1 4.6E-10 1E-14 79.0 7.3 61 210-273 2-69 (70)
93 KOG0123|consensus 99.1 1.6E-10 3.5E-15 106.6 6.2 113 158-274 123-241 (369)
94 KOG0124|consensus 99.0 2.3E-10 5E-15 101.5 4.8 78 194-274 111-188 (544)
95 KOG4212|consensus 99.0 1.2E-09 2.6E-14 99.1 8.2 79 194-276 42-121 (608)
96 KOG4205|consensus 98.9 6.1E-10 1.3E-14 99.7 3.5 114 160-278 58-175 (311)
97 KOG0109|consensus 98.9 2.9E-09 6.2E-14 92.1 6.4 76 197-283 3-78 (346)
98 PF13893 RRM_5: RNA recognitio 98.9 7.8E-09 1.7E-13 69.3 6.6 55 213-275 1-55 (56)
99 KOG4208|consensus 98.9 9.7E-09 2.1E-13 84.9 8.0 79 194-275 47-126 (214)
100 KOG0153|consensus 98.8 1.1E-08 2.5E-13 90.4 8.2 80 193-284 225-304 (377)
101 COG5193 LHP1 La protein, small 98.8 5.6E-10 1.2E-14 100.3 -0.7 54 1-54 278-331 (438)
102 KOG0116|consensus 98.8 2.3E-08 4.9E-13 92.9 9.0 80 196-279 288-367 (419)
103 KOG2590|consensus 98.7 2E-09 4.3E-14 100.1 0.4 58 1-63 308-365 (448)
104 KOG0415|consensus 98.7 2E-08 4.3E-13 89.0 6.4 81 193-276 236-316 (479)
105 KOG4205|consensus 98.7 1.9E-08 4.2E-13 90.1 5.3 81 195-279 5-85 (311)
106 KOG4206|consensus 98.7 7.6E-08 1.6E-12 80.8 7.8 76 196-277 9-88 (221)
107 KOG0132|consensus 98.6 7.8E-08 1.7E-12 93.0 7.1 89 194-295 419-507 (894)
108 KOG0146|consensus 98.6 1.1E-07 2.3E-12 81.6 7.0 79 195-275 18-97 (371)
109 KOG0533|consensus 98.6 2.8E-07 6E-12 79.6 9.1 79 196-278 83-161 (243)
110 KOG4212|consensus 98.5 1.8E-07 3.9E-12 85.1 7.2 75 193-275 533-607 (608)
111 KOG0110|consensus 98.5 3.8E-07 8.2E-12 87.6 8.7 77 198-277 517-596 (725)
112 KOG4209|consensus 98.5 5.6E-07 1.2E-11 77.8 7.8 82 192-277 97-178 (231)
113 KOG2591|consensus 98.5 1.4E-07 3E-12 88.2 4.2 76 108-183 95-170 (684)
114 KOG4661|consensus 98.5 3.7E-07 7.9E-12 85.6 6.9 79 194-275 403-481 (940)
115 PF08777 RRM_3: RNA binding mo 98.4 3.9E-07 8.4E-12 69.2 5.5 74 196-275 1-76 (105)
116 KOG4206|consensus 98.4 1.1E-06 2.4E-11 73.9 8.3 101 158-264 60-208 (221)
117 KOG0105|consensus 98.4 1.4E-06 3.1E-11 71.0 8.4 114 158-279 53-190 (241)
118 KOG1457|consensus 98.4 2.4E-06 5.2E-11 71.6 9.2 95 194-289 32-128 (284)
119 KOG4211|consensus 98.4 1.9E-06 4.2E-11 79.8 9.1 140 116-273 27-176 (510)
120 KOG4660|consensus 98.3 3.8E-07 8.3E-12 85.5 4.1 72 193-272 72-143 (549)
121 KOG1548|consensus 98.3 2.1E-06 4.5E-11 76.3 8.1 78 194-275 132-217 (382)
122 KOG4454|consensus 98.3 3.7E-07 8E-12 76.2 3.1 80 194-278 7-86 (267)
123 KOG0151|consensus 98.2 2.8E-06 6E-11 81.8 6.9 81 193-280 171-254 (877)
124 KOG0226|consensus 98.2 2.6E-06 5.7E-11 72.7 5.9 79 193-274 187-265 (290)
125 KOG0106|consensus 98.2 6.3E-07 1.4E-11 75.9 2.1 107 158-275 43-167 (216)
126 PF04059 RRM_2: RNA recognitio 98.1 2.5E-05 5.5E-10 58.1 9.4 68 197-265 2-71 (97)
127 KOG0106|consensus 98.1 5.1E-06 1.1E-10 70.4 4.9 69 197-276 2-70 (216)
128 KOG4211|consensus 97.9 4.7E-05 1E-09 70.8 8.0 73 196-275 10-82 (510)
129 KOG0120|consensus 97.8 3.4E-05 7.3E-10 73.1 5.7 114 160-277 233-367 (500)
130 KOG1190|consensus 97.7 0.0017 3.6E-08 59.4 14.8 73 196-276 297-370 (492)
131 KOG0120|consensus 97.6 0.00014 3E-09 69.0 5.9 114 158-274 339-487 (500)
132 KOG0147|consensus 97.5 3.1E-05 6.8E-10 72.8 1.6 81 193-277 176-256 (549)
133 KOG1457|consensus 97.5 9.6E-05 2.1E-09 62.2 4.2 60 197-261 211-270 (284)
134 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00043 9.2E-09 45.6 5.6 52 197-255 2-53 (53)
135 KOG1995|consensus 97.4 0.00019 4.2E-09 64.4 4.9 80 193-275 63-150 (351)
136 PF11608 Limkain-b1: Limkain b 97.4 0.001 2.2E-08 47.6 7.4 67 197-276 3-74 (90)
137 KOG1190|consensus 97.4 0.001 2.3E-08 60.7 8.8 111 158-275 343-487 (492)
138 KOG2314|consensus 97.3 0.00037 8.1E-09 65.9 5.8 72 196-269 58-135 (698)
139 KOG4210|consensus 97.3 0.00054 1.2E-08 61.3 6.4 76 195-274 183-259 (285)
140 KOG0112|consensus 97.2 0.00037 8.1E-09 69.2 4.9 144 130-284 375-536 (975)
141 KOG0129|consensus 97.2 0.0011 2.4E-08 62.3 7.2 65 193-257 367-432 (520)
142 KOG1548|consensus 97.2 0.0037 8E-08 56.0 10.0 109 160-275 193-348 (382)
143 KOG2590|consensus 97.0 0.00019 4.1E-09 67.3 0.8 160 7-178 204-364 (448)
144 KOG3152|consensus 97.0 0.00048 1E-08 59.2 3.1 71 196-269 74-156 (278)
145 KOG0128|consensus 97.0 0.00033 7.2E-09 69.2 2.0 133 130-275 670-811 (881)
146 COG5175 MOT2 Transcriptional r 96.8 0.0042 9.2E-08 55.4 6.9 77 196-275 114-199 (480)
147 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.0084 1.8E-07 44.9 7.3 72 196-272 6-84 (100)
148 KOG0115|consensus 96.7 0.007 1.5E-07 52.2 7.4 101 166-276 10-111 (275)
149 PF08952 DUF1866: Domain of un 96.4 0.012 2.6E-07 46.8 6.8 75 193-279 24-108 (146)
150 KOG1365|consensus 96.4 0.008 1.7E-07 54.6 6.1 76 196-275 280-358 (508)
151 KOG1456|consensus 96.3 0.045 9.7E-07 49.8 10.3 119 145-266 307-474 (494)
152 KOG4307|consensus 96.3 0.013 2.8E-07 57.1 7.3 76 196-275 866-943 (944)
153 KOG0129|consensus 96.1 0.012 2.6E-07 55.5 6.2 64 193-257 256-325 (520)
154 KOG1456|consensus 96.0 0.041 8.8E-07 50.0 8.7 75 194-276 285-360 (494)
155 KOG4849|consensus 95.9 0.0095 2.1E-07 53.5 3.9 62 196-257 80-143 (498)
156 PF09421 FRQ: Frequency clock 95.8 0.0062 1.3E-07 61.8 2.8 50 20-69 473-523 (989)
157 KOG0128|consensus 95.7 0.00071 1.5E-08 67.0 -4.0 64 194-257 665-728 (881)
158 KOG1365|consensus 95.4 0.05 1.1E-06 49.6 6.7 60 197-257 162-225 (508)
159 PF10309 DUF2414: Protein of u 95.3 0.12 2.6E-06 35.1 6.8 53 197-257 6-61 (62)
160 KOG4454|consensus 95.3 0.0059 1.3E-07 51.5 0.5 86 159-261 58-147 (267)
161 PF08675 RNA_bind: RNA binding 94.7 0.17 3.8E-06 36.3 6.6 52 197-257 10-61 (87)
162 COG0724 RNA-binding proteins ( 94.6 0.032 7E-07 48.3 3.4 89 158-246 165-275 (306)
163 KOG2202|consensus 94.2 0.025 5.5E-07 48.8 1.8 62 211-276 83-145 (260)
164 PLN03134 glycine-rich RNA-bind 93.6 0.012 2.5E-07 47.3 -1.3 31 158-188 84-114 (144)
165 KOG4676|consensus 93.5 0.13 2.9E-06 47.0 5.0 76 197-276 8-86 (479)
166 KOG0112|consensus 93.0 0.034 7.4E-07 55.8 0.6 68 193-262 369-436 (975)
167 PF03467 Smg4_UPF3: Smg-4/UPF3 92.5 0.25 5.4E-06 41.1 5.1 68 195-263 6-79 (176)
168 KOG0111|consensus 92.3 0.043 9.4E-07 46.4 0.2 46 145-190 29-92 (298)
169 PF13893 RRM_5: RNA recognitio 92.2 0.059 1.3E-06 35.4 0.8 26 159-184 30-55 (56)
170 KOG2416|consensus 91.9 0.16 3.5E-06 48.9 3.5 75 194-275 442-518 (718)
171 PF15023 DUF4523: Protein of u 91.5 0.74 1.6E-05 36.5 6.2 72 193-279 83-158 (166)
172 KOG4307|consensus 91.3 0.14 3E-06 50.2 2.5 81 194-278 432-513 (944)
173 KOG2193|consensus 91.1 0.16 3.5E-06 47.0 2.6 75 197-279 2-76 (584)
174 KOG1996|consensus 90.9 0.7 1.5E-05 40.9 6.2 62 210-274 300-362 (378)
175 PF07576 BRAP2: BRCA1-associat 90.9 3.1 6.8E-05 31.7 9.1 64 197-263 13-78 (110)
176 KOG2278|consensus 90.0 0.25 5.5E-06 40.3 2.6 52 18-69 27-82 (207)
177 KOG2068|consensus 88.4 0.23 5E-06 44.7 1.4 71 197-271 78-155 (327)
178 PF00076 RRM_1: RNA recognitio 87.8 0.035 7.5E-07 37.8 -3.4 24 158-181 47-70 (70)
179 PF01885 PTS_2-RNA: RNA 2'-pho 87.4 0.36 7.7E-06 40.5 1.9 52 19-70 26-82 (186)
180 KOG0130|consensus 85.4 0.17 3.6E-06 39.7 -1.0 45 135-186 106-150 (170)
181 KOG4210|consensus 84.6 0.82 1.8E-05 41.0 2.8 63 195-257 87-149 (285)
182 PF11767 SET_assoc: Histone ly 84.4 4.4 9.6E-05 27.8 5.7 45 207-261 11-55 (66)
183 KOG4285|consensus 83.7 7 0.00015 35.0 8.1 69 196-275 197-266 (350)
184 PLN03213 repressor of silencin 83.5 0.17 3.7E-06 47.8 -2.0 58 130-187 25-87 (759)
185 KOG4574|consensus 81.2 1.2 2.7E-05 44.8 2.8 71 198-275 300-370 (1007)
186 PRK00819 RNA 2'-phosphotransfe 80.8 1.2 2.7E-05 37.0 2.3 50 19-70 27-78 (179)
187 KOG2193|consensus 78.9 0.16 3.5E-06 47.0 -3.8 106 158-273 45-151 (584)
188 KOG0804|consensus 78.1 8.2 0.00018 36.4 6.9 65 196-263 74-139 (493)
189 KOG4660|consensus 77.3 3.2 6.9E-05 40.0 4.1 69 196-265 388-457 (549)
190 KOG2253|consensus 76.4 2.9 6.2E-05 41.2 3.6 71 193-275 37-107 (668)
191 KOG2135|consensus 73.6 2.3 5E-05 40.2 2.1 73 193-275 369-442 (526)
192 smart00361 RRM_1 RNA recogniti 72.9 4.3 9.2E-05 27.8 2.9 34 142-182 36-69 (70)
193 PRK14548 50S ribosomal protein 72.8 13 0.00028 26.8 5.5 57 198-257 22-80 (84)
194 TIGR03636 L23_arch archaeal ri 70.9 14 0.00031 26.2 5.2 57 198-257 15-73 (77)
195 KOG0107|consensus 69.7 0.99 2.1E-05 37.1 -1.0 35 145-186 49-83 (195)
196 KOG0114|consensus 69.0 0.85 1.8E-05 34.2 -1.4 43 145-187 37-94 (124)
197 PF04847 Calcipressin: Calcipr 66.7 13 0.00029 31.0 5.1 58 209-275 8-67 (184)
198 PLN03120 nucleic acid binding 63.8 1.4 3.1E-05 38.7 -1.2 29 158-187 51-79 (260)
199 KOG0132|consensus 61.3 1.8 3.9E-05 43.3 -1.2 90 129-218 423-528 (894)
200 KOG4676|consensus 56.2 2.6 5.7E-05 38.9 -1.0 58 196-257 151-208 (479)
201 KOG0125|consensus 56.0 2.8 6.1E-05 37.9 -0.8 66 116-188 103-174 (376)
202 PF03880 DbpA: DbpA RNA bindin 54.7 56 0.0012 22.6 5.9 58 206-275 11-73 (74)
203 PTZ00315 2'-phosphotransferase 54.7 10 0.00022 37.5 2.6 51 20-70 400-456 (582)
204 KOG4483|consensus 53.7 55 0.0012 30.6 7.0 56 195-257 390-446 (528)
205 KOG2295|consensus 51.7 2.9 6.3E-05 40.3 -1.4 66 196-262 231-296 (648)
206 KOG0122|consensus 51.4 5 0.00011 34.8 0.0 31 158-188 239-269 (270)
207 PF11608 Limkain-b1: Limkain b 50.3 29 0.00063 25.1 3.7 49 131-186 22-75 (90)
208 KOG4207|consensus 47.2 6.6 0.00014 33.3 0.1 33 146-185 58-90 (256)
209 KOG2891|consensus 45.6 29 0.00063 30.8 3.8 34 197-230 150-195 (445)
210 KOG0126|consensus 44.9 2.1 4.5E-05 35.5 -3.1 55 131-185 39-112 (219)
211 PF15513 DUF4651: Domain of un 41.8 53 0.0012 22.2 3.8 19 211-229 9-27 (62)
212 KOG4410|consensus 41.4 30 0.00066 30.8 3.3 47 196-248 330-377 (396)
213 PLN03121 nucleic acid binding 39.0 6 0.00013 34.4 -1.4 28 158-186 52-79 (243)
214 PF07530 PRE_C2HC: Associated 38.7 47 0.001 22.8 3.3 59 211-275 2-61 (68)
215 PF07292 NID: Nmi/IFP 35 domai 37.3 80 0.0017 23.0 4.5 25 193-217 49-73 (88)
216 PTZ00191 60S ribosomal protein 33.5 1.3E+02 0.0028 24.1 5.5 55 199-256 84-140 (145)
217 smart00596 PRE_C2HC PRE_C2HC d 32.1 62 0.0013 22.4 3.0 59 211-275 2-61 (69)
218 KOG0121|consensus 31.2 21 0.00045 28.0 0.6 28 158-185 86-113 (153)
219 PF10567 Nab6_mRNP_bdg: RNA-re 29.6 82 0.0018 28.3 4.1 80 196-275 15-104 (309)
220 PF03468 XS: XS domain; Inter 29.5 88 0.0019 24.0 3.8 48 197-247 9-65 (116)
221 KOG2318|consensus 28.3 3.8E+02 0.0083 26.6 8.5 80 194-274 172-303 (650)
222 KOG0415|consensus 27.7 16 0.00034 33.5 -0.6 56 131-186 243-317 (479)
223 KOG0113|consensus 25.8 20 0.00044 32.1 -0.3 63 121-183 91-176 (335)
224 KOG0108|consensus 25.0 70 0.0015 30.6 3.1 42 139-187 56-97 (435)
225 PF08952 DUF1866: Domain of un 24.9 90 0.002 25.0 3.2 35 145-187 72-106 (146)
226 PF10736 DUF2527: Protein of u 23.7 36 0.00078 20.0 0.5 10 1-10 16-25 (38)
227 TIGR02697 WPE_wolbac Wolbachia 21.8 78 0.0017 18.7 1.7 28 4-32 7-34 (36)
228 cd00027 BRCT Breast Cancer Sup 20.1 1.5E+02 0.0033 18.7 3.3 26 197-222 2-27 (72)
No 1
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=3.4e-32 Score=187.79 Aligned_cols=68 Identities=28% Similarity=0.473 Sum_probs=66.7
Q ss_pred CeeecCCCCcCcChHHHHhhccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCcceeec
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKG 68 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~~~vrr 68 (299)
|||||||+||++|.||+++|+.+|||||++|++||||++||+|.+.|++||+.|++||||+||++||.
T Consensus 8 vEyYFS~~NL~~D~fLr~~md~~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~~S~~vevse~g~kVRp 75 (75)
T cd08036 8 LEFCLSRENLASDMYLISQMDSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEKGEKVRP 75 (75)
T ss_pred eeeeechhhccccHHHHHHhccCCCEehHHHhccHHHHHhcCCHHHHHHHHhhCCeEEECCCCCccCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999983
No 2
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.97 E-value=1.3e-31 Score=186.61 Aligned_cols=68 Identities=28% Similarity=0.458 Sum_probs=66.7
Q ss_pred CeeecCCCCcCcChHHHHhhccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCcceeec
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKG 68 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~~~vrr 68 (299)
|||||||+||++|.||+++|+.+|||||++|++||||++||+|++.|++||+.|+.||||+||++||.
T Consensus 8 vEyYFSd~NL~~D~fL~~~md~~G~Vpi~~iasF~rik~lt~d~~~I~~AL~~S~~levsedg~kVRp 75 (75)
T cd08035 8 LEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKVRP 75 (75)
T ss_pred HHhhcCHhhcccCHHHHHhhCcCCCEehHHHhccHHHHHhcCCHHHHHHHHHcCCeEEEcCCCCccCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999983
No 3
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.96 E-value=2.1e-30 Score=183.23 Aligned_cols=68 Identities=37% Similarity=0.534 Sum_probs=66.2
Q ss_pred CeeecCCCCcCcChHHHHhh--ccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCcceeec
Q psy3930 1 MEFYLSDSNLRKDRFFSQLL--QESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKG 68 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~--~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~~~vrr 68 (299)
|||||||+||++|.||+++| +.+|||||++|++||||++|+.|.+.|++||+.|+.|||++|+++|||
T Consensus 8 vEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~~d~~~VRR 77 (77)
T cd08033 8 VEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDGKKVRR 77 (77)
T ss_pred HHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCC
Confidence 79999999999999999999 568999999999999999999999999999999999999999999997
No 4
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=99.96 E-value=3.6e-30 Score=183.79 Aligned_cols=68 Identities=31% Similarity=0.644 Sum_probs=66.3
Q ss_pred CeeecCCCCcCcChHHHHhhc--cCCCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCcceeec
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQ--ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKG 68 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~--~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~~~vrr 68 (299)
|||||||+||++|.||+++|+ .+|||||++|++||||++||.|.+.|++||+.|+.|||++|+++|||
T Consensus 13 vEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRR 82 (82)
T cd08032 13 VDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRIRR 82 (82)
T ss_pred HHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEcCCCCccCC
Confidence 799999999999999999998 57999999999999999999999999999999999999999999997
No 5
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.96 E-value=3.6e-30 Score=181.10 Aligned_cols=68 Identities=32% Similarity=0.529 Sum_probs=66.6
Q ss_pred CeeecCCCCcCcChHHHHhhccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCcceeec
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKG 68 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~~~vrr 68 (299)
|||||||+||++|.||+++|+.+|||||++|++||||++|+.|.+.|++||+.|+.|||++|+++||.
T Consensus 8 vEfYFSd~NL~~D~fL~~~m~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VR~ 75 (75)
T cd08031 8 LEYYFSRENLANDAYLLSQMDSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEKGEKVRP 75 (75)
T ss_pred HHHHcCHhhhccCHHHHHHhCCCCCEEHHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999984
No 6
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.95 E-value=1.9e-29 Score=175.42 Aligned_cols=66 Identities=29% Similarity=0.522 Sum_probs=63.5
Q ss_pred CeeecCCCCcCcChHHHHhhccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCcceeec
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKG 68 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~~~vrr 68 (299)
|||||||+||++|.||+++|+.+|||||++|++||||++||.|.+.|++||+.|+.|||+++ +|||
T Consensus 8 vEyYFSd~NL~~D~fLr~~md~dG~Vpi~~ia~F~rmk~Lt~d~~~I~~Al~~S~~vev~~~--~~r~ 73 (73)
T cd08037 8 IEYYFSVDNLERDFFLRRKMDEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDM--KIRR 73 (73)
T ss_pred HHHhccHhhhccCHHHHHHhccCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEecc--hhcC
Confidence 79999999999999999999999999999999999999999999999999999999999998 5664
No 7
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.95 E-value=2.4e-29 Score=174.83 Aligned_cols=66 Identities=23% Similarity=0.443 Sum_probs=63.3
Q ss_pred CeeecCCCCcCcChHHHHhhccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCcceeec
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKG 68 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~~~vrr 68 (299)
|||||||+||++|.||+++|+.+|||||++|++||||++|+.|.+.|++||+.|+.||+++|+ |||
T Consensus 8 vEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~ia~F~rmk~lt~d~~~I~~Al~~S~~ve~~~~~--~r~ 73 (73)
T cd08038 8 IEYYFSTENLERDFFLRRKMDLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQK--IRR 73 (73)
T ss_pred HHhhcchhhhccCHHHHHHhCCCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEeCCc--ccC
Confidence 799999999999999999999999999999999999999999999999999999999999994 554
No 8
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=99.95 E-value=2.4e-29 Score=180.02 Aligned_cols=69 Identities=36% Similarity=0.607 Sum_probs=67.6
Q ss_pred CeeecCCCCcCcChHHHHhhcc-CCCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCcceeecc
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQE-SPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKGN 69 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~~-~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~~~vrr~ 69 (299)
|||||||+||++|.||+++|+. +|||||++|++||||++|+.|.+.|++||+.|+.|||++|+++|||+
T Consensus 11 vEfYFSd~NL~~D~fLr~~~~~~~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~~S~~lel~~d~~~VRR~ 80 (80)
T smart00715 11 VEYYFSDENLPRDKFLRKKMDKNDGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEDGLKVRRR 80 (80)
T ss_pred HHHHcCHhhhhhCHHHHHHhccCCCCEEhHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCeeCcC
Confidence 6999999999999999999999 89999999999999999999999999999999999999999999984
No 9
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.95 E-value=4e-29 Score=176.71 Aligned_cols=67 Identities=39% Similarity=0.625 Sum_probs=64.3
Q ss_pred CeeecCCCCcCcChHHHHhh--ccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCcceeec
Q psy3930 1 MEFYLSDSNLRKDRFFSQLL--QESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKG 68 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~--~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~~~vrr 68 (299)
|||||||+||++|.||+++| +.+|||||++|++||||++|+.+ +.|++||+.|+.|||++||++|||
T Consensus 8 vEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~~d~~~VRR 76 (76)
T cd08029 8 VEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVSEDGENVRR 76 (76)
T ss_pred HHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEeCCCCcccC
Confidence 79999999999999999999 57899999999999999999866 999999999999999999999997
No 10
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=99.95 E-value=5.7e-29 Score=178.07 Aligned_cols=68 Identities=43% Similarity=0.746 Sum_probs=66.1
Q ss_pred CeeecCCCCcCcChHHHHhhcc-CCCEEeeeeecchhhhhccCCHHHHHHHHhcCc--ceeeccCcceeec
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQE-SPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LLEVTEDGTKVKG 68 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~~-~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~--~~~v~~~~~~vrr 68 (299)
|||||||+||++|.||+++|+. +|||||++|++||||++|+.|.+.|++||+.|+ .|||++|+++|||
T Consensus 12 vEfYFSd~NL~~D~fLr~~m~~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~~d~~~VRR 82 (82)
T cd08028 12 IEYYFGDFNLPRDKFLKEQIKEDDGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTKIRR 82 (82)
T ss_pred HHhhcCHhhhccCHHHHHHHhccCCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEcCCCCccCC
Confidence 7999999999999999999984 899999999999999999999999999999999 9999999999997
No 11
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.95 E-value=8.6e-29 Score=173.00 Aligned_cols=66 Identities=26% Similarity=0.493 Sum_probs=63.7
Q ss_pred CeeecCCCCcCcChHHHHhhccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCcceeec
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKG 68 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~~~vrr 68 (299)
|||||||+||++|.||+++|+.+|||||++|++||||++|++|.+.|++||+.|+.|||++ ++||+
T Consensus 8 vEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~lev~e--~kvR~ 73 (73)
T cd08034 8 IEYYFSVDNLEKDFFLRRKMDPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVD--EKVRC 73 (73)
T ss_pred HHhhcCHhhhccCHHHHHHcCCCCCEeHHHHhccHHHHHHcCCHHHHHHHHHcCCeEEEec--CeecC
Confidence 7999999999999999999999999999999999999999999999999999999999999 47875
No 12
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.94 E-value=2.5e-28 Score=176.94 Aligned_cols=68 Identities=34% Similarity=0.535 Sum_probs=64.3
Q ss_pred CeeecCCCCcCcChHHHHhh--ccCCCEEeeeeecchhhhhccCC------------HHHHHHHHhcCcceeeccCccee
Q psy3930 1 MEFYLSDSNLRKDRFFSQLL--QESPEIEVSVFLKCNKLARLTHD------------PDDVVKALRKSKLLEVTEDGTKV 66 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~--~~~~~v~~~~~~~f~~~~~~~~~------------~~~i~~a~~~s~~~~v~~~~~~v 66 (299)
|||||||+||++|+||+++| +.+|||||++|++||||++|+.+ .+.|++||+.|+.|||++|+++|
T Consensus 9 vEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~levseD~~~V 88 (90)
T cd08030 9 VEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKVSEDGKRV 88 (90)
T ss_pred HHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEEcCCCCcc
Confidence 79999999999999999999 56899999999999999999853 68999999999999999999999
Q ss_pred ec
Q psy3930 67 KG 68 (299)
Q Consensus 67 rr 68 (299)
||
T Consensus 89 RR 90 (90)
T cd08030 89 GR 90 (90)
T ss_pred CC
Confidence 98
No 13
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.94 E-value=4.4e-28 Score=171.85 Aligned_cols=68 Identities=41% Similarity=0.707 Sum_probs=66.8
Q ss_pred CeeecCCCCcCcChHHHHhhccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCcceeec
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKG 68 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~~~vrr 68 (299)
|||||||+||++|.||+++|+.+|||||++|++||||++|+.|.+.|++||+.|+.|||++|+++|||
T Consensus 8 vEfYFSd~NL~~D~fL~~~~~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~s~~lel~~~~~~Vrr 75 (75)
T cd07323 8 VEYYFSDENLCKDRFLRSLMDDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEDGTKVRR 75 (75)
T ss_pred hHhccCHhhhCcCHHHHHhcCCCCCEEHHHHhCchHHHHHcCCHHHHHHHHHhCCeEEEeCCCCccCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999997
No 14
>KOG1855|consensus
Probab=99.93 E-value=1.8e-26 Score=206.04 Aligned_cols=164 Identities=32% Similarity=0.395 Sum_probs=132.3
Q ss_pred CeeecCCCCcCcChHHHHhhccC--CCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCcceeeccccccccccc
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQES--PEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKGNIIRHFLVPI 78 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~~~--~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~~~vrr~~~~~~~~p~ 78 (299)
|||||||+||.+|.||.++|..+ |||||.+|++|+|||+||.|+.+|+.||+.|..|+||+|+++|||.. |+
T Consensus 148 VEyyFSDenL~~d~fLlkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~va~ALr~S~kL~vseDgkKVrRis------Pl 221 (484)
T KOG1855|consen 148 VEYYFSDENLLKDAFLLKHVRRNKEGYVPVKLVASFKKVKALTRDWKLVADALRKSSKLEVSEDGKKVRRIS------PL 221 (484)
T ss_pred hheeeccccccchHHHHHHHhcCCCCceeeehhhhHHHHHHHhhhhHHHHHHHhhcceEEEccCCceeeecC------CC
Confidence 79999999999999999999876 99999999999999999999999999999999999999999999963 33
Q ss_pred cccccccccccCccccccccCCCCcCchHHHHHHHHHHhhhhcCCCCcchhHHHHHhhhcCCCeeeeeeecccccccCCC
Q psy3930 79 SMETEASDNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTH 158 (299)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~k~r~r~~~~~~~i~~q~efyfsd~nL~~d~fl~~~~~~~~~~~l~~f~~F~~i~~~~~ 158 (299)
++-.++ +
T Consensus 222 p~~~~e----------------------------------------e--------------------------------- 228 (484)
T KOG1855|consen 222 PEFDEE----------------------------------------E--------------------------------- 228 (484)
T ss_pred CCcccc----------------------------------------c---------------------------------
Confidence 322211 0
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeecc---CC--
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKF---KS-- 233 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~---~~-- 233 (299)
...++|.+.|||.+-.-+-|.++|+.+|.|..|+|... ..
T Consensus 229 -----------------------------------l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~ 273 (484)
T KOG1855|consen 229 -----------------------------------LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDV 273 (484)
T ss_pred -----------------------------------cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCccc
Confidence 11367888899999888999999999999999998764 21
Q ss_pred CCC--------cceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeeccc
Q psy3930 234 TGK--------LKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLSF 279 (299)
Q Consensus 234 ~g~--------~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~~~ 279 (299)
.|. .+-+|+|+|...+.|.+|.+. +|....+-.|.+.+...+.+.
T Consensus 274 r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~-~~~e~~wr~glkvkLl~k~a~ 326 (484)
T KOG1855|consen 274 RGFPKKYFELQTKECALVEYEEVEAARKAREL-LNPEQNWRMGLKVKLLGKKAP 326 (484)
T ss_pred ccCCccchhhhhhhhhhhhhhhhHHHHHHHHh-hchhhhhhhcchhhhhhccCc
Confidence 222 245799999999999999998 654444445555555555444
No 15
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=99.87 E-value=4.8e-24 Score=144.89 Aligned_cols=54 Identities=37% Similarity=0.620 Sum_probs=49.5
Q ss_pred CeeecCCCCcCcChHHHHhhcc--CCCEEeeeeecchhhhhcc-CCHHHHHHHHhcC
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQE--SPEIEVSVFLKCNKLARLT-HDPDDVVKALRKS 54 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~~--~~~v~~~~~~~f~~~~~~~-~~~~~i~~a~~~s 54 (299)
|||||||+||++|.||+++|++ +|||||++|++|+||++|+ .|.+.|++||+.|
T Consensus 5 vEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~~~~~~I~~al~~S 61 (61)
T PF05383_consen 5 VEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTNTDIELIVDALRDS 61 (61)
T ss_dssp HHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH--S-HHHHHHHHHTS
T ss_pred HHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhcCCHHHHHHHHHcC
Confidence 6999999999999999999999 7999999999999999999 8999999999987
No 16
>KOG4213|consensus
Probab=99.83 E-value=5.1e-22 Score=158.47 Aligned_cols=134 Identities=24% Similarity=0.384 Sum_probs=100.6
Q ss_pred CeeecCCCCcCcChHHHHhh-c-cCCCEEeeeeecchhhhhccCCHHHHHHHHhcCc--ceeeccCcceeeccccccccc
Q psy3930 1 MEFYLSDSNLRKDRFFSQLL-Q-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LLEVTEDGTKVKGNIIRHFLV 76 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~-~-~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~--~~~v~~~~~~vrr~~~~~~~~ 76 (299)
|||||+|.||+||+||++++ . .+|||||.+++.|||+.+|++|.+.|++||+.|. ++++|+|++++||.+ ..
T Consensus 21 leyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~lttD~~~Iv~al~ksk~~l~eisedk~k~rr~~----sk 96 (205)
T KOG4213|consen 21 LEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTTDFNVIVEALSKSKAELMEISEDKTKIRRSP----SK 96 (205)
T ss_pred hhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccccHHHHHHHHhhCHHhhhhhhhchhhhhcCc----CC
Confidence 69999999999999999998 3 4699999999999999999999999999999776 899999999999976 88
Q ss_pred cccccccccccccCccccccccCCCCcCchHHHHHHHHHHhhhhcCCCCcchhHHHHHhhhcCC----Ceeeeeeecccc
Q psy3930 77 PISMETEASDNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESP----EIEVSVFLKCNK 152 (299)
Q Consensus 77 p~~~~~~~~~~~~~~~~~~~~~~~k~r~r~~~~~~~i~~q~efyfsd~nL~~d~fl~~~~~~~~----~~~l~~f~~F~~ 152 (299)
|+|+.+.+.. +++.+.+++.+ ....++ ..+..+.. ++..+-.|+..+ .+.+++|++|.+
T Consensus 97 plpEvt~e~~---~~~~~r~v~~K---~td~ql-~~l~qw~~----------~k~~nv~mr~~~~k~~~fkGsvkv~f~t 159 (205)
T KOG4213|consen 97 PLPEVTDEYK---EGIKERTVYKK---ITDDQL-DDLNQWAS----------GKGHNVKMRRHGNKAHPFKGSVKVTFQT 159 (205)
T ss_pred CCccccHHHH---HHHHHhhhhcc---CCHHHH-HHHHHHhc----------ccceEeeccccCCCCCCCCCceEEEeec
Confidence 9998887765 33444456642 222333 33332221 222233343322 488899999998
Q ss_pred ccc
Q psy3930 153 LAR 155 (299)
Q Consensus 153 i~~ 155 (299)
.++
T Consensus 160 k~q 162 (205)
T KOG4213|consen 160 KEQ 162 (205)
T ss_pred HHH
Confidence 544
No 17
>KOG2591|consensus
Probab=99.81 E-value=3.4e-20 Score=170.53 Aligned_cols=145 Identities=22% Similarity=0.416 Sum_probs=124.6
Q ss_pred CeeecCCCCcCcChHHHHhhccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCcceeeccccccccccccc
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKGNIIRHFLVPISM 80 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~~~vrr~~~~~~~~p~~~ 80 (299)
+|||||.+||..|.||..+|++|.||||.+++.|+.|++||+|+++|+++|+.|+.|+|++++.+||.+.+|
T Consensus 104 lEy~fSreNlssD~YL~sQMDSDqyVPI~tva~~~~i~klttDvdLI~Evlresp~VqvDekgekVrp~~kR-------- 175 (684)
T KOG2591|consen 104 LEYYFSRENLSSDRYLISQMDSDQYVPINTVANFPEIMKLTTDVDLIVEVLRESPNVQVDEKGEKVRPNHKR-------- 175 (684)
T ss_pred HHHhhccccccchhhhhhhcccccccchhhhccchhhhhhccchHHHHHHHhcCCCceeccCccccccCcce--------
Confidence 699999999999999999999999999999999999999999999999999999999999999999975321
Q ss_pred cccccccccCccccccccCCCCcCchHHHHHHHHHHhhhhcCCCCcchhHHHHHhhhcCCCeeeeeeecccccccCCCCH
Q psy3930 81 ETEASDNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDP 160 (299)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~k~r~r~~~~~~~i~~q~efyfsd~nL~~d~fl~~~~~~~~~~~l~~f~~F~~i~~~~~~~ 160 (299)
T Consensus 176 -------------------------------------------------------------------------------- 175 (684)
T KOG2591|consen 176 -------------------------------------------------------------------------------- 175 (684)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhc--CCceEEEEeeccCCCCCcc
Q psy3930 161 DDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSK--YGKVTYVSLPKFKSTGKLK 238 (299)
Q Consensus 161 ~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~--~G~i~~v~i~~~~~~g~~k 238 (299)
|.|.+.-||..+..|+++.+|+. +..+..|.+..+.
T Consensus 176 ------------------------------------cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------ 213 (684)
T KOG2591|consen 176 ------------------------------------CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------ 213 (684)
T ss_pred ------------------------------------eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------
Confidence 44556667777777778888864 6677788876553
Q ss_pred eEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeec
Q psy3930 239 GFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRL 277 (299)
Q Consensus 239 g~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~ 277 (299)
-+||+|++..+|+.|.+. +......|.|.+|..++|.
T Consensus 214 -nWyITfesd~DAQqAyky-lreevk~fqgKpImARIKa 250 (684)
T KOG2591|consen 214 -NWYITFESDTDAQQAYKY-LREEVKTFQGKPIMARIKA 250 (684)
T ss_pred -ceEEEeecchhHHHHHHH-HHHHHHhhcCcchhhhhhh
Confidence 289999999999999998 6656678889998888874
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.80 E-value=1.7e-19 Score=164.90 Aligned_cols=118 Identities=27% Similarity=0.419 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCc
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~ 237 (299)
.+.++|.+|+..+++..+.++.++|..+.+... ....++|||+|||..+++++|+++|++||.|..|.+++++.+|.+
T Consensus 157 ~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~--~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~ 234 (346)
T TIGR01659 157 GSEADSQRAIKNLNGITVRNKRLKVSYARPGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTP 234 (346)
T ss_pred ccHHHHHHHHHHcCCCccCCceeeeeccccccc--ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCcc
Confidence 348999999999999999999999987664332 344678999999999999999999999999999999999889999
Q ss_pred ceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeecc
Q psy3930 238 KGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLS 278 (299)
Q Consensus 238 kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~~ 278 (299)
+|||||+|.+.++|++|++. +|+..+....++|.|++...
T Consensus 235 kG~aFV~F~~~e~A~~Ai~~-lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 235 RGVAFVRFNKREEAQEAISA-LNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred ceEEEEEECCHHHHHHHHHH-hCCCccCCCceeEEEEECCc
Confidence 99999999999999999999 89855555567888876544
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.74 E-value=6.7e-18 Score=162.60 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccCC---------CCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEe
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDK---------PDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSL 228 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~---------~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i 228 (299)
.+.++|..|+..+|+..+.++.++|.+....... .....++|||+|||+++++++|+++|+.||.|..|++
T Consensus 157 ~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl 236 (612)
T TIGR01645 157 EVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQL 236 (612)
T ss_pred CcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEE
Confidence 4589999999999999999999999865432211 1233578999999999999999999999999999999
Q ss_pred eccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeec
Q psy3930 229 PKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRL 277 (299)
Q Consensus 229 ~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~ 277 (299)
+++..+|.++|||||+|.+.++|.+|++. +|| ..++|+.|+|....
T Consensus 237 ~~D~~tgksKGfGFVeFe~~e~A~kAI~a-mNg--~elgGr~LrV~kAi 282 (612)
T TIGR01645 237 ARAPTGRGHKGYGFIEYNNLQSQSEAIAS-MNL--FDLGGQYLRVGKCV 282 (612)
T ss_pred EecCCCCCcCCeEEEEECCHHHHHHHHHH-hCC--CeeCCeEEEEEecC
Confidence 99988899999999999999999999999 998 89999999986543
No 20
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=99.72 E-value=2.8e-18 Score=122.64 Aligned_cols=80 Identities=35% Similarity=0.647 Sum_probs=75.1
Q ss_pred chHHHHHHHHHHhhhhcCCCCcchhHHHHHhhh--cCCCeeeeeeecccccccCCCCHHHHHHHHHhcCcccccccccee
Q psy3930 105 RKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ--ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKV 182 (299)
Q Consensus 105 r~~~~~~~i~~q~efyfsd~nL~~d~fl~~~~~--~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v 182 (299)
|.+++...|++|+||||||+||++|.||+.+|. ..||++++++++|++|+.++.+.+.+.+|++.+..+++++++.+|
T Consensus 1 ~~~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~V 80 (82)
T cd08032 1 RVKQLLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRI 80 (82)
T ss_pred CHHHHHHHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEcCCCCcc
Confidence 347889999999999999999999999999997 478999999999999999999999999999999999999999988
Q ss_pred ee
Q psy3930 183 RR 184 (299)
Q Consensus 183 ~r 184 (299)
+|
T Consensus 81 RR 82 (82)
T cd08032 81 RR 82 (82)
T ss_pred CC
Confidence 75
No 21
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=1.5e-17 Score=153.43 Aligned_cols=81 Identities=25% Similarity=0.402 Sum_probs=76.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
++|||+|||+++++++|+++|++||.|.+|+++++..+|.++|||||+|.+.++|.+|+.+ ||| ..+.|++|.|..+
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~-lnG--~~~~gr~i~V~~~ 346 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILS-LNG--YTLGNRVLQVSFK 346 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHH-hCC--CEECCeEEEEEEc
Confidence 3699999999999999999999999999999999988999999999999999999999999 999 8889999999887
Q ss_pred cccC
Q psy3930 277 LSFG 280 (299)
Q Consensus 277 ~~~~ 280 (299)
....
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 7654
No 22
>KOG0148|consensus
Probab=99.72 E-value=1.5e-17 Score=141.27 Aligned_cols=113 Identities=23% Similarity=0.375 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccC--------------CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCce
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD--------------KPDVDECTIYVEKLPPEAEHDYIESVFSKYGKV 223 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~--------------~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i 223 (299)
...++|++||..||+--|+.+.++-.++...+. +..+++|+|||||++...++++|+..|+.||+|
T Consensus 112 ~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I 191 (321)
T KOG0148|consen 112 PNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPI 191 (321)
T ss_pred cchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcc
Confidence 457899999999999999999998877654332 125789999999999999999999999999999
Q ss_pred EEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeecccCCCC
Q psy3930 224 TYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLSFGITP 283 (299)
Q Consensus 224 ~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~~~~~~~ 283 (299)
..||+-.+ +||+||.|++.|+|..||.. +|| .++.|..+ ||+|++..
T Consensus 192 ~EVRvFk~------qGYaFVrF~tkEaAahAIv~-mNn--tei~G~~V----kCsWGKe~ 238 (321)
T KOG0148|consen 192 QEVRVFKD------QGYAFVRFETKEAAAHAIVQ-MNN--TEIGGQLV----RCSWGKEG 238 (321)
T ss_pred eEEEEecc------cceEEEEecchhhHHHHHHH-hcC--ceeCceEE----EEeccccC
Confidence 99999876 47999999999999999999 888 77778776 77885543
No 23
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=1.6e-16 Score=127.84 Aligned_cols=84 Identities=15% Similarity=0.320 Sum_probs=77.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||+++++++|+++|++||.|..|.++.+..+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~-lng--~~i~Gr~l~V 108 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE-MDG--KELNGRHIRV 108 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH-cCC--CEECCEEEEE
Confidence 3467899999999999999999999999999999999998999999999999999999999999 898 7889999999
Q ss_pred EeecccC
Q psy3930 274 TSRLSFG 280 (299)
Q Consensus 274 ~~k~~~~ 280 (299)
.......
T Consensus 109 ~~a~~~~ 115 (144)
T PLN03134 109 NPANDRP 115 (144)
T ss_pred EeCCcCC
Confidence 8765443
No 24
>KOG0145|consensus
Probab=99.69 E-value=5.9e-17 Score=136.98 Aligned_cols=117 Identities=24% Similarity=0.357 Sum_probs=107.8
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCc
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~ 237 (299)
-++++|.+|+..+|++.+..+.++|..+.|..+ ...+..+||+|||..+|..+|+.+|++||.|..-+|..|..+|.+
T Consensus 91 v~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~--~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~s 168 (360)
T KOG0145|consen 91 VRPKDAEKAINTLNGLRLQNKTIKVSYARPSSD--SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLS 168 (360)
T ss_pred cChHHHHHHHhhhcceeeccceEEEEeccCChh--hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhccccee
Confidence 358999999999999999999999998876654 566789999999999999999999999999999999999999999
Q ss_pred ceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeec
Q psy3930 238 KGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRL 277 (299)
Q Consensus 238 kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~ 277 (299)
+|.|||+|....+|+.||+. +||.+......+|.|+...
T Consensus 169 rGVgFiRFDKr~EAe~AIk~-lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 169 RGVGFIRFDKRIEAEEAIKG-LNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred cceeEEEecchhHHHHHHHh-ccCCCCCCCCCCeEEEecC
Confidence 99999999999999999999 9999888888999998753
No 25
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.68 E-value=1.1e-16 Score=147.73 Aligned_cols=115 Identities=26% Similarity=0.410 Sum_probs=98.2
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCc
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~ 237 (299)
.+.++|.+||..+++..+.++.++|..+.+... ....++|||+|||..+++++|+.+|++||.|..+.++.+..+|.+
T Consensus 53 ~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~--~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~ 130 (352)
T TIGR01661 53 VRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSD--SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLS 130 (352)
T ss_pred CcHHHHHHHHhhcccEEECCeeEEEEeeccccc--ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCc
Confidence 448999999999999999999999988765433 345678999999999999999999999999999999998878899
Q ss_pred ceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 238 KGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 238 kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
+|||||+|.+.++|+.|++. +||..+...+.++.+..
T Consensus 131 ~g~~fv~f~~~~~A~~ai~~-l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 131 KGVGFIRFDKRDEADRAIKT-LNGTTPSGCTEPITVKF 167 (352)
T ss_pred CcEEEEEECCHHHHHHHHHH-hCCCccCCCceeEEEEE
Confidence 99999999999999999999 89844443445555544
No 26
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.67 E-value=1.4e-17 Score=115.34 Aligned_cols=73 Identities=27% Similarity=0.462 Sum_probs=69.5
Q ss_pred HHHHHHhhhhcCCCCcchhHHHHHhhhcCCCeeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceee
Q psy3930 111 QQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVR 183 (299)
Q Consensus 111 ~~i~~q~efyfsd~nL~~d~fl~~~~~~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~ 183 (299)
+.|++|+|||||++||++|.||+.+|...||++++++++|++|+.++.|.+.+.+|++.+..+++++.+.+|+
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~md~~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~~S~~vevse~g~kVR 74 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQMDSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEKGEKVR 74 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHHhccCCCEehHHHhccHHHHHhcCCHHHHHHHHhhCCeEEECCCCCccC
Confidence 4578899999999999999999999999999999999999999999999999999999999999999888875
No 27
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.66 E-value=2.9e-17 Score=114.74 Aligned_cols=73 Identities=27% Similarity=0.443 Sum_probs=69.6
Q ss_pred HHHHHHhhhhcCCCCcchhHHHHHhhhcCCCeeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceee
Q psy3930 111 QQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVR 183 (299)
Q Consensus 111 ~~i~~q~efyfsd~nL~~d~fl~~~~~~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~ 183 (299)
+.|++|+||||||+||++|.||+..|...||++++++++|++|++++.|.+.+.+|++.+..+++++++.+|+
T Consensus 2 e~i~~QvEyYFSd~NL~~D~fL~~~md~~G~Vpi~~iasF~rik~lt~d~~~I~~AL~~S~~levsedg~kVR 74 (75)
T cd08035 2 ECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKVR 74 (75)
T ss_pred hHHHhhHHhhcCHhhcccCHHHHHhhCcCCCEehHHHhccHHHHHhcCCHHHHHHHHHcCCeEEEcCCCCccC
Confidence 4688999999999999999999999999999999999999999999999999999999999999999888875
No 28
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.66 E-value=4.1e-17 Score=115.50 Aligned_cols=74 Identities=39% Similarity=0.569 Sum_probs=69.3
Q ss_pred HHHHHHhhhhcCCCCcchhHHHHHhhh--cCCCeeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeee
Q psy3930 111 QQIMNLMEFYLSDSNLRKDRFFSQLLQ--ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRR 184 (299)
Q Consensus 111 ~~i~~q~efyfsd~nL~~d~fl~~~~~--~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r 184 (299)
++|++|+||||||+||++|.||+.+|. ..||++++++++|++|++++.+.+.+.+|++.+..+++++++.+|+|
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~~d~~~VRR 77 (77)
T cd08033 2 QKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDGKKVRR 77 (77)
T ss_pred hHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCC
Confidence 468899999999999999999999995 46899999999999999999999999999999999999999988875
No 29
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.65 E-value=4.8e-17 Score=114.60 Aligned_cols=73 Identities=32% Similarity=0.510 Sum_probs=69.6
Q ss_pred HHHHHHhhhhcCCCCcchhHHHHHhhhcCCCeeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceee
Q psy3930 111 QQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVR 183 (299)
Q Consensus 111 ~~i~~q~efyfsd~nL~~d~fl~~~~~~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~ 183 (299)
++|++|+||||||+||++|.||+..|...||++++++++|++|++++.+.+.+.+|++.+..+++++++.+|+
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VR 74 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQMDSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEKGEKVR 74 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHhCCCCCEEHHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCccC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999988875
No 30
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=99.65 E-value=8.3e-17 Score=115.36 Aligned_cols=77 Identities=42% Similarity=0.733 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhhhcCCCCcchhHHHHHhhh-cCCCeeeeeeecccccccCCCCHHHHHHHHHhcC--ccccccccceeee
Q psy3930 108 QLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LLEVTEDGTKVRR 184 (299)
Q Consensus 108 ~~~~~i~~q~efyfsd~nL~~d~fl~~~~~-~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~--~~~~~~~~~~v~r 184 (299)
++..+|++|+||||||+||++|.||+.+|. ..||++++++++|++|++++.+.+.+.+|++.+. .+++++++.+|+|
T Consensus 3 ~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~~d~~~VRR 82 (82)
T cd08028 3 DLEKKIIRQIEYYFGDFNLPRDKFLKEQIKEDDGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTKIRR 82 (82)
T ss_pred HHHHHHHHHHHhhcCHhhhccCHHHHHHHhccCCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEcCCCCccCC
Confidence 567889999999999999999999999997 4799999999999999999999999999999998 8999999998875
No 31
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=99.65 E-value=6.6e-17 Score=115.79 Aligned_cols=77 Identities=39% Similarity=0.618 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhhhcCCCCcchhHHHHHhhhc-CCCeeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeee
Q psy3930 108 QLYQQIMNLMEFYLSDSNLRKDRFFSQLLQE-SPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRR 184 (299)
Q Consensus 108 ~~~~~i~~q~efyfsd~nL~~d~fl~~~~~~-~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r 184 (299)
++.+.|++|+||||||+||++|.||+.+|.. .||++++++.+|++|++++.+.+.+.+|++.+..+++++++.+|+|
T Consensus 2 ~~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~~S~~lel~~d~~~VRR 79 (80)
T smart00715 2 ELKQKIKKQVEYYFSDENLPRDKFLRKKMDKNDGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEDGLKVRR 79 (80)
T ss_pred hHHHHHHHHHHHHcCHhhhhhCHHHHHHhccCCCCEEhHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCeeCc
Confidence 4567899999999999999999999999998 8999999999999999999999999999999999999999999986
No 32
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.64 E-value=8.3e-17 Score=112.13 Aligned_cols=71 Identities=27% Similarity=0.455 Sum_probs=67.4
Q ss_pred HHHHHHhhhhcCCCCcchhHHHHHhhhcCCCeeeeeeecccccccCCCCHHHHHHHHHhcCccccccccce
Q psy3930 111 QQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTK 181 (299)
Q Consensus 111 ~~i~~q~efyfsd~nL~~d~fl~~~~~~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~ 181 (299)
+.|++|+||||||+||++|.||+..|...||++++++++|++|++++.+.+.+.+|++.+..+++++..++
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~md~dG~Vpi~~ia~F~rmk~Lt~d~~~I~~Al~~S~~vev~~~~~r 72 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKMDEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDMKIR 72 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHhccCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEecchhc
Confidence 56889999999999999999999999999999999999999999999999999999999999999988754
No 33
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.64 E-value=9.2e-17 Score=111.88 Aligned_cols=71 Identities=23% Similarity=0.405 Sum_probs=67.3
Q ss_pred HHHHHHhhhhcCCCCcchhHHHHHhhhcCCCeeeeeeecccccccCCCCHHHHHHHHHhcCccccccccce
Q psy3930 111 QQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTK 181 (299)
Q Consensus 111 ~~i~~q~efyfsd~nL~~d~fl~~~~~~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~ 181 (299)
+.|++|+||||||+||++|.||+..|...||++++++++|++|++++.+.+.+.+|++.+..+++.++.++
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~ia~F~rmk~lt~d~~~I~~Al~~S~~ve~~~~~~r 72 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKMDLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQKIR 72 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHhCCCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEeCCccc
Confidence 46889999999999999999999999999999999999999999999999999999999999999988754
No 34
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.61 E-value=2.3e-16 Score=111.62 Aligned_cols=73 Identities=40% Similarity=0.626 Sum_probs=67.5
Q ss_pred HHHHHHhhhhcCCCCcchhHHHHHhhh--cCCCeeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeee
Q psy3930 111 QQIMNLMEFYLSDSNLRKDRFFSQLLQ--ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRR 184 (299)
Q Consensus 111 ~~i~~q~efyfsd~nL~~d~fl~~~~~--~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r 184 (299)
++|++|+||||||+||++|.||+.+|. ..||++++++++|++|++++.+ +.+.+|++.+..+++++++.+|+|
T Consensus 2 ~~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~~d~~~VRR 76 (76)
T cd08029 2 EEIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVSEDGENVRR 76 (76)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEeCCCCcccC
Confidence 468899999999999999999999995 6779999999999999999875 899999999999999999998875
No 35
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.61 E-value=8.4e-16 Score=150.41 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCc
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~ 237 (299)
.+.++|.+|+..+++..+.++.++|.+.............+|||+|||.++++++|+++|+.||.|..|.++.+. +|.+
T Consensus 50 ~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~s 128 (562)
T TIGR01628 50 QNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKS 128 (562)
T ss_pred CCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCc
Confidence 448999999999999999999999987643332223345689999999999999999999999999999999886 8889
Q ss_pred ceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 238 KGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 238 kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
+|||||+|.+.++|.+|++. +|| ..+.++.+.+..
T Consensus 129 kg~afV~F~~~e~A~~Ai~~-lng--~~~~~~~i~v~~ 163 (562)
T TIGR01628 129 RGYGFVHFEKEESAKAAIQK-VNG--MLLNDKEVYVGR 163 (562)
T ss_pred ccEEEEEECCHHHHHHHHHH-hcc--cEecCceEEEec
Confidence 99999999999999999999 898 777888887743
No 36
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.60 E-value=1.3e-15 Score=149.08 Aligned_cols=116 Identities=21% Similarity=0.283 Sum_probs=100.0
Q ss_pred CCHHHHHHHHHhcCccccc----cccceeeeeecccCC----------------CCCCCcEEEEecCCCCCCHHHHHHHh
Q psy3930 158 HDPDDVVKALRKSKLLEVT----EDGTKVRRTVVVQDK----------------PDVDECTIYVEKLPPEAEHDYIESVF 217 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~----~~~~~v~r~~~~~~~----------------~~~~~~~l~V~nLp~~~t~e~L~~~F 217 (299)
.+.++|.+|++.+++..+. +..+.+.++.+..+. ....+++|||+|||.++++++|+++|
T Consensus 227 ~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F 306 (562)
T TIGR01628 227 EKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELF 306 (562)
T ss_pred CCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHH
Confidence 4589999999999999998 777888765443222 13456789999999999999999999
Q ss_pred hcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeec
Q psy3930 218 SKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRL 277 (299)
Q Consensus 218 ~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~ 277 (299)
++||.|..|.++.+. +|.++|||||+|.+.++|.+|+.. +|| ..++|++|.|....
T Consensus 307 ~~~G~i~~~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~-~~g--~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 307 SECGEITSAKVMLDE-KGVSRGFGFVCFSNPEEANRAVTE-MHG--RMLGGKPLYVALAQ 362 (562)
T ss_pred HhcCCeEEEEEEECC-CCCcCCeEEEEeCCHHHHHHHHHH-hcC--CeeCCceeEEEecc
Confidence 999999999999984 899999999999999999999999 998 88899999997643
No 37
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.60 E-value=2.1e-15 Score=144.07 Aligned_cols=115 Identities=23% Similarity=0.321 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccC----------CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEE
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD----------KPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVS 227 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~----------~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~ 227 (299)
.+.++|.+|| .+++..+.+..+.|........ ...+..++|||+|||..+++++|+++|++||.|..|.
T Consensus 139 ~~~e~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~ 217 (457)
T TIGR01622 139 YDVESVIKAL-ALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQ 217 (457)
T ss_pred CCHHHHHHHH-HhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 3479999999 5888888888887765432111 1123358999999999999999999999999999999
Q ss_pred eeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 228 LPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 228 i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
++++..+|.++|||||+|.+.++|.+|++. ||| ..+.|+.|.|...
T Consensus 218 ~~~d~~~g~~~g~afV~f~~~e~A~~A~~~-l~g--~~i~g~~i~v~~a 263 (457)
T TIGR01622 218 LHRDPETGRSKGFGFIQFHDAEEAKEALEV-MNG--FELAGRPIKVGYA 263 (457)
T ss_pred EEEcCCCCccceEEEEEECCHHHHHHHHHh-cCC--cEECCEEEEEEEc
Confidence 999988899999999999999999999999 999 8888999999874
No 38
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.60 E-value=3.2e-16 Score=109.70 Aligned_cols=69 Identities=23% Similarity=0.454 Sum_probs=65.5
Q ss_pred HHHHHHhhhhcCCCCcchhHHHHHhhhcCCCeeeeeeecccccccCCCCHHHHHHHHHhcCcccccccc
Q psy3930 111 QQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDG 179 (299)
Q Consensus 111 ~~i~~q~efyfsd~nL~~d~fl~~~~~~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~ 179 (299)
+.|++|+||||||+||++|.||+..|...||++++++++|++|++++.+.+.+.+|+..+..+++++..
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fLr~~m~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~lev~e~k 70 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFFLRRKMDPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVDEK 70 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHcCCCCCEeHHHHhccHHHHHHcCCHHHHHHHHHcCCeEEEecCe
Confidence 568899999999999999999999999999999999999999999999999999999999999999844
No 39
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.56 E-value=1.1e-15 Score=108.36 Aligned_cols=74 Identities=42% Similarity=0.706 Sum_probs=69.1
Q ss_pred HHHHHHhhhhcCCCCcchhHHHHHhhhcCCCeeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeee
Q psy3930 111 QQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRR 184 (299)
Q Consensus 111 ~~i~~q~efyfsd~nL~~d~fl~~~~~~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r 184 (299)
..|++|+||||||+||++|.||+..|...+|++++++.+|++|++++.+.+.+.+|++.+..+++++.+.+|+|
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~s~~lel~~~~~~Vrr 75 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLMDDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEDGTKVRR 75 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhcCCCCCEEHHHHhCchHHHHHcCCHHHHHHHHHhCCeEEEeCCCCccCC
Confidence 46889999999999999999999999888999999999999999999999999999999999999998777764
No 40
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.56 E-value=1.1e-15 Score=111.05 Aligned_cols=74 Identities=32% Similarity=0.574 Sum_probs=67.1
Q ss_pred HHHHHHhhhhcCCCCcchhHHHHHhhh--cCCCeeeeeeecccccccCCC------------CHHHHHHHHHhcCccccc
Q psy3930 111 QQIMNLMEFYLSDSNLRKDRFFSQLLQ--ESPEIEVSVFLKCNKLARLTH------------DPDDVVKALRKSKLLEVT 176 (299)
Q Consensus 111 ~~i~~q~efyfsd~nL~~d~fl~~~~~--~~~~~~l~~f~~F~~i~~~~~------------~~~~a~~Al~~~~~~~~~ 176 (299)
++|++|+||||||.||++|.||+.+|. ..||++++++++|++|++++. +.+.+.+||+.+..++++
T Consensus 3 ~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~levs 82 (90)
T cd08030 3 EKVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKVS 82 (90)
T ss_pred HHHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEEc
Confidence 578899999999999999999999995 578999999999999999874 257899999999999999
Q ss_pred cccceeee
Q psy3930 177 EDGTKVRR 184 (299)
Q Consensus 177 ~~~~~v~r 184 (299)
+++.+|+|
T Consensus 83 eD~~~VRR 90 (90)
T cd08030 83 EDGKRVGR 90 (90)
T ss_pred CCCCccCC
Confidence 99999875
No 41
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.56 E-value=4.4e-14 Score=136.69 Aligned_cols=121 Identities=22% Similarity=0.258 Sum_probs=101.0
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC---------------------------CCCCCCcE
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD---------------------------KPDVDECT 198 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~---------------------------~~~~~~~~ 198 (299)
.|+.|.+ .++|..|| .++++.+.+..++|.+...... ......++
T Consensus 226 afVeF~~-------~e~A~~Al-~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (509)
T TIGR01642 226 AFLEFRT-------VEEATFAM-ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDR 297 (509)
T ss_pred EEEEeCC-------HHHHhhhh-cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCE
Confidence 3555554 79999999 6999999999988876432110 00123478
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeec
Q psy3930 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRL 277 (299)
Q Consensus 199 l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~ 277 (299)
|||+|||..+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..|++. ||| ..+.|+.|.|....
T Consensus 298 l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~-l~g--~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 298 IYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAA-LNG--KDTGDNKLHVQRAC 373 (509)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH-cCC--CEECCeEEEEEECc
Confidence 99999999999999999999999999999999988999999999999999999999999 999 78889999887754
No 42
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=1.8e-14 Score=101.06 Aligned_cols=70 Identities=39% Similarity=0.702 Sum_probs=64.9
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 199 l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
|||+|||+++++++|+++|++||.|..+.+..+ .++..+|+|||+|.+.++|++|++. +|| ..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~-l~g--~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEE-LNG--KKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHH-HTT--EEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHH-cCC--CEECccCcC
Confidence 799999999999999999999999999999987 5899999999999999999999999 888 777787764
No 43
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=6.1e-15 Score=131.76 Aligned_cols=169 Identities=22% Similarity=0.285 Sum_probs=120.9
Q ss_pred CeeecC-----CCCcCcChHHHHhhcc----CCCEEeeeeecchhhhhccCCHHHHHHHHhcC---cceeeccCcceeec
Q psy3930 1 MEFYLS-----DSNLRKDRFFSQLLQE----SPEIEVSVFLKCNKLARLTHDPDDVVKALRKS---KLLEVTEDGTKVKG 68 (299)
Q Consensus 1 ~e~yfs-----~~nl~~d~~l~~~~~~----~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s---~~~~v~~~~~~vrr 68 (299)
+||||| |.|+++|+||+.+..+ +|||||.++++|+||+..+...+.|..|+++| ..++++.+|...+|
T Consensus 79 vE~~fS~s~~~d~n~~~dk~~ktta~Kn~~~~kwVpIkt~~tfn~~k~~gs~~~~v~~a~rks~~~rv~e~Sssgsn~~r 158 (438)
T COG5193 79 VEFYFSGSKDTDSNFPKDKFLKTTAPKNKKRDKWVPIKTIATFNRMKNSGSPVSAVSGALRKSLDARVLEVSSSGSNKNR 158 (438)
T ss_pred eeEEeeccccccccccchhhhccccccccCCCCceeeeeeeeeccccccCCchhhhhhhhhcCcccceeeeccccccccc
Confidence 699999 9999999999977443 69999999999999999999999999999999 79999999999888
Q ss_pred cccccccccccccccccccc--------------------------cC-------cccc-------c---cccCCCCcCc
Q psy3930 69 NIIRHFLVPISMETEASDNV--------------------------DK-------DLSD-------L---QRKDGGGRHR 105 (299)
Q Consensus 69 ~~~~~~~~p~~~~~~~~~~~--------------------------~~-------~~~~-------~---~~~~~k~r~r 105 (299)
.+...-..-.. ..+..+.. +. .+.. . ++....+-.+
T Consensus 159 ~~k~~s~n~~s-~~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~ 237 (438)
T COG5193 159 TEKLISNNNKS-TSQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFR 237 (438)
T ss_pred cchhhhhhhhh-hhhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChH
Confidence 75211000000 00000000 00 0000 0 0011001011
Q ss_pred hHHH-----------------------------HHHHHHHhhhhcCCCCcchhHHHHHhhhcCCCeeeeeeecccccccC
Q psy3930 106 KKQL-----------------------------YQQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARL 156 (299)
Q Consensus 106 ~~~~-----------------------------~~~i~~q~efyfsd~nL~~d~fl~~~~~~~~~~~l~~f~~F~~i~~~ 156 (299)
..+. -..+..|+||||+..||..|.|++..+++.|++++++...|-++.++
T Consensus 238 ~~q~~nn~~~r~~~~~~~~~~~~~~~~ep~~lsI~a~k~QiEyYFseenl~~d~~lrkk~~kaGf~plsfi~kf~Rn~Sf 317 (438)
T COG5193 238 EAQRFNNGFYRNKKYPNDPETVYYYSVEPILLSIMAKKEQIEYYFSEENLKSDEFLRKKFKKAGFIPLSFIGKFYRNLSF 317 (438)
T ss_pred HHHHHhccccCCcCCCcchhhhcccccCceeeehhhHHhhhHhhhhHHhhhhhhHHHhhhhhcccccHhhhhhhhhcccc
Confidence 1111 13466799999999999999999999999999999999999998888
Q ss_pred CCCHHHHHHHHHhc
Q psy3930 157 THDPDDVVKALRKS 170 (299)
Q Consensus 157 ~~~~~~a~~Al~~~ 170 (299)
..+...+.+|++..
T Consensus 318 ~gd~nLilaa~ke~ 331 (438)
T COG5193 318 GGDKNLILAAMKEV 331 (438)
T ss_pred CCchhhhHHHHHHH
Confidence 88887777777654
No 44
>KOG0121|consensus
Probab=99.51 E-value=5.5e-14 Score=106.97 Aligned_cols=81 Identities=22% Similarity=0.353 Sum_probs=74.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
...+++||||||+..+++|+|-++|+++|+|..|.|-.|+.+-.+.|||||+|.+.++|..|++. +|| ..+..++|.
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alry-isg--trLddr~ir 109 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRY-ISG--TRLDDRPIR 109 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHH-hcc--Cccccccee
Confidence 45579999999999999999999999999999999999988888999999999999999999999 999 777899987
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
+-..
T Consensus 110 ~D~D 113 (153)
T KOG0121|consen 110 IDWD 113 (153)
T ss_pred eecc
Confidence 7654
No 45
>KOG0122|consensus
Probab=99.50 E-value=7.9e-14 Score=117.26 Aligned_cols=79 Identities=38% Similarity=0.567 Sum_probs=74.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
.+.++|-|.|||.++++++|+++|.+||.|..|.+.+|+.||.++|||||.|.+.++|++||.. ||| +.+.+.+|+|
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~-LnG--~gyd~LILrv 263 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIAD-LNG--YGYDNLILRV 263 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHH-ccC--cccceEEEEE
Confidence 3678899999999999999999999999999999999999999999999999999999999999 999 7888888866
Q ss_pred Ee
Q psy3930 274 TS 275 (299)
Q Consensus 274 ~~ 275 (299)
+.
T Consensus 264 Ew 265 (270)
T KOG0122|consen 264 EW 265 (270)
T ss_pred Ee
Confidence 54
No 46
>KOG0109|consensus
Probab=99.50 E-value=1.9e-14 Score=123.67 Aligned_cols=138 Identities=22% Similarity=0.302 Sum_probs=116.9
Q ss_pred HHHHHhhhcCCCeee-eeeecccccccCC----------CCHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcE
Q psy3930 130 RFFSQLLQESPEIEV-SVFLKCNKLARLT----------HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECT 198 (299)
Q Consensus 130 ~fl~~~~~~~~~~~l-~~f~~F~~i~~~~----------~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~ 198 (299)
.|+.++.++.+.-.| ++|..||++.+|. ++...+..||.++++..|++..+.|+.+++. .....+
T Consensus 5 LFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK----sk~stk 80 (346)
T KOG0109|consen 5 LFIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK----SKASTK 80 (346)
T ss_pred hhccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEecccc----CCCccc
Confidence 466666666666666 6677777777766 6677888999999999999999999876644 334678
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeecc
Q psy3930 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLS 278 (299)
Q Consensus 199 l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~~ 278 (299)
++|+|+.+.++.++|++.|.+||+|..|.|+++ |+||+|.-.++|..|+.. ||| ..+.|.++.|++..+
T Consensus 81 l~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~-l~~--~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 81 LHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRG-LDN--TEFQGKRMHVQLSTS 149 (346)
T ss_pred cccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhc-ccc--cccccceeeeeeecc
Confidence 999999999999999999999999999999865 899999999999999999 888 999999999999877
Q ss_pred cCCC
Q psy3930 279 FGIT 282 (299)
Q Consensus 279 ~~~~ 282 (299)
.-++
T Consensus 150 rlrt 153 (346)
T KOG0109|consen 150 RLRT 153 (346)
T ss_pred cccc
Confidence 6443
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.48 E-value=9.3e-14 Score=133.37 Aligned_cols=120 Identities=17% Similarity=0.214 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeeccc-----C----------C--------------------CCCCCcEEEEe
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ-----D----------K--------------------PDVDECTIYVE 202 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~-----~----------~--------------------~~~~~~~l~V~ 202 (299)
.+.++|..|+..+++..+.++.++|..+.... + . ..+...+|||+
T Consensus 321 ~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~ 400 (481)
T TIGR01649 321 ADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLS 400 (481)
T ss_pred CCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEe
Confidence 45899999999999999999999887543210 0 0 01235689999
Q ss_pred cCCCCCCHHHHHHHhhcCCc--eEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCce--EEEEeecc
Q psy3930 203 KLPPEAEHDYIESVFSKYGK--VTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSI--LTTTSRLS 278 (299)
Q Consensus 203 nLp~~~t~e~L~~~F~~~G~--i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~--l~v~~k~~ 278 (299)
|||.++++++|+++|+.||. +..|++.... ++ .+|+|||+|.+.++|..|+.. +|| ..+.++. ....+|++
T Consensus 401 NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~~-~~~~gfVeF~~~e~A~~Al~~-ln~--~~l~~~~~~~~~~lkv~ 475 (481)
T TIGR01649 401 NIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-NE-RSKMGLLEWESVEDAVEALIA-LNH--HQLNEPNGSAPYHLKVS 475 (481)
T ss_pred cCCCCCCHHHHHHHHHhcCCccceEEEEecCC-CC-cceeEEEEcCCHHHHHHHHHH-hcC--CccCCCCCCccceEEEE
Confidence 99999999999999999997 8888876443 33 578999999999999999999 998 4454443 22334455
Q ss_pred cCCC
Q psy3930 279 FGIT 282 (299)
Q Consensus 279 ~~~~ 282 (299)
++++
T Consensus 476 fs~~ 479 (481)
T TIGR01649 476 FSTS 479 (481)
T ss_pred eccC
Confidence 5443
No 48
>KOG0144|consensus
Probab=99.48 E-value=2.1e-14 Score=129.25 Aligned_cols=122 Identities=22% Similarity=0.294 Sum_probs=91.7
Q ss_pred eeecccccccCCCCHHHHHHHHHhc-Ccccccc--ccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCc
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKS-KLLEVTE--DGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGK 222 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~-~~~~~~~--~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~ 222 (299)
-|++|.+ .++|.+|+..+ |...+.| ..+.|+.++...++ ....++||||-|+..++|.+++++|++||.
T Consensus 79 CFv~~~t-------rk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er-~~~e~KLFvg~lsK~~te~evr~iFs~fG~ 150 (510)
T KOG0144|consen 79 CFVKYYT-------RKEADEAINALHNQKTLPGMHHPVQVKYADGERER-IVEERKLFVGMLSKQCTENEVREIFSRFGH 150 (510)
T ss_pred EEEEecc-------HHHHHHHHHHhhcccccCCCCcceeecccchhhhc-cccchhhhhhhccccccHHHHHHHHHhhCc
Confidence 3666665 45555555544 3333444 34566655544333 255689999999999999999999999999
Q ss_pred eEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCC-CCCCCCceEEEEeec
Q psy3930 223 VTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPC-PPDYQSSILTTTSRL 277 (299)
Q Consensus 223 i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~-~~~~~g~~l~v~~k~ 277 (299)
|+.|+|.+|. .|.+||||||.|.+.+-|..|+++ +||. .......+|.|+...
T Consensus 151 Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika-~ng~~tmeGcs~PLVVkFAD 204 (510)
T KOG0144|consen 151 IEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKA-LNGTQTMEGCSQPLVVKFAD 204 (510)
T ss_pred cchhhheecc-cccccceeEEEEehHHHHHHHHHh-hccceeeccCCCceEEEecc
Confidence 9999999997 899999999999999999999999 7763 355566777776643
No 49
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.47 E-value=2.6e-13 Score=124.28 Aligned_cols=80 Identities=20% Similarity=0.347 Sum_probs=74.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|+.||+|..|+|+++..+|+++|||||+|.++++|++|++. ||| ..+.+++|.
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~-LnG--~~l~gr~i~ 180 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKN-LNG--ITVRNKRLK 180 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHH-cCC--CccCCceee
Confidence 45678999999999999999999999999999999999988999999999999999999999999 898 778899887
Q ss_pred EEe
Q psy3930 273 TTS 275 (299)
Q Consensus 273 v~~ 275 (299)
|..
T Consensus 181 V~~ 183 (346)
T TIGR01659 181 VSY 183 (346)
T ss_pred eec
Confidence 764
No 50
>KOG0124|consensus
Probab=99.45 E-value=2.4e-13 Score=120.14 Aligned_cols=129 Identities=19% Similarity=0.290 Sum_probs=112.3
Q ss_pred eeeecccccccCC------------------CCHHHHHHHHHhcCccccccccceeeeeecccCCC---------CCCCc
Q psy3930 145 SVFLKCNKLARLT------------------HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP---------DVDEC 197 (299)
Q Consensus 145 ~~f~~F~~i~~~~------------------~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~---------~~~~~ 197 (299)
..|..||.|+++. +-++.|+-|++.+|+..++|+.++|.|....+... ...-.
T Consensus 132 ~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fn 211 (544)
T KOG0124|consen 132 RAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFN 211 (544)
T ss_pred hhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhh
Confidence 4599999999987 45788999999999999999999999876443321 23456
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 198 ~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
.|||..++++.+++||+..|+.||+|.+|.+.++...+.++||||++|.+..+...|+.. +|- ++++|.-|+|-..
T Consensus 212 RiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias-MNl--FDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 212 RIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS-MNL--FDLGGQYLRVGKC 287 (544)
T ss_pred eEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh-cch--hhcccceEecccc
Confidence 899999999999999999999999999999999987788999999999999999999999 886 8889999988443
No 51
>KOG0127|consensus
Probab=99.45 E-value=2.6e-13 Score=125.48 Aligned_cols=84 Identities=30% Similarity=0.425 Sum_probs=74.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhc--CCCCC-CCCCCceEE
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELG--LNPCP-PDYQSSILT 272 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~--lng~~-~~~~g~~l~ 272 (299)
+.+|||.|||+++|+++|.+.|++||+|.++.++.++.||.++|+|||.|.++.+|+.||.+. -+|.. +.+.|+.|.
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lk 371 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLK 371 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEe
Confidence 379999999999999999999999999999999999999999999999999999999999972 22323 667899999
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|.+.+..
T Consensus 372 v~~Av~R 378 (678)
T KOG0127|consen 372 VTLAVTR 378 (678)
T ss_pred eeeccch
Confidence 9876543
No 52
>KOG0113|consensus
Probab=99.45 E-value=3.2e-13 Score=116.54 Aligned_cols=95 Identities=23% Similarity=0.342 Sum_probs=84.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
...-+||||+-|+.++++..|+..|+.||+|..|+|++++.||+++|||||+|+++-+...|.+. -.| +.++|+.|-
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~-adG--~~Idgrri~ 174 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKD-ADG--IKIDGRRIL 174 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHh-ccC--ceecCcEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999 788 889999998
Q ss_pred EEe---ecccCCCCCCCCCCC
Q psy3930 273 TTS---RLSFGITPLGFESGG 290 (299)
Q Consensus 273 v~~---k~~~~~~~r~~~~g~ 290 (299)
|-+ +..++.-||+.|+|-
T Consensus 175 VDvERgRTvkgW~PRRLGGGL 195 (335)
T KOG0113|consen 175 VDVERGRTVKGWLPRRLGGGL 195 (335)
T ss_pred EEecccccccccccccccCCc
Confidence 854 456677777766543
No 53
>KOG0149|consensus
Probab=99.45 E-value=2e-13 Score=114.39 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=70.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
.-.+||||||++.+..+.|+.+|++||+|....++.|+.+|+++|||||+|.+.++|.+|++. -| ..++||+-.+.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~---piIdGR~aNcn 86 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PN---PIIDGRKANCN 86 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CC---Ccccccccccc
Confidence 346799999999999999999999999999999999999999999999999999999999987 55 67778877665
Q ss_pred ee
Q psy3930 275 SR 276 (299)
Q Consensus 275 ~k 276 (299)
+.
T Consensus 87 lA 88 (247)
T KOG0149|consen 87 LA 88 (247)
T ss_pred hh
Confidence 53
No 54
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.45 E-value=2.8e-13 Score=130.08 Aligned_cols=113 Identities=17% Similarity=0.108 Sum_probs=86.8
Q ss_pred CCHHHHHHHHHh--cCccccccccceeeeeeccc-CCC---------CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEE
Q psy3930 158 HDPDDVVKALRK--SKLLEVTEDGTKVRRTVVVQ-DKP---------DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTY 225 (299)
Q Consensus 158 ~~~~~a~~Al~~--~~~~~~~~~~~~v~r~~~~~-~~~---------~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~ 225 (299)
.+.++|.+|+.. .++..+.++.++|..+.... ... .....+|||+||+..+++++|+++|+.||.|..
T Consensus 46 ~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~ 125 (481)
T TIGR01649 46 EDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLR 125 (481)
T ss_pred CchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEE
Confidence 458999999986 47788999999998764321 000 111237899999999999999999999999999
Q ss_pred EEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 226 VSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 226 v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
|.+.++.. .|+|||+|.+.++|.+|++. |||..+.-++..|+|..
T Consensus 126 v~i~~~~~----~~~afVef~~~~~A~~A~~~-Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 126 IVTFTKNN----VFQALVEFESVNSAQHAKAA-LNGADIYNGCCTLKIEY 170 (481)
T ss_pred EEEEecCC----ceEEEEEECCHHHHHHHHHH-hcCCcccCCceEEEEEE
Confidence 99877542 36899999999999999999 99944433445666543
No 55
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=6.5e-13 Score=114.77 Aligned_cols=82 Identities=23% Similarity=0.299 Sum_probs=73.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
.++|||+|||+.+++++|+++|+.||+|..|+|+++.. .+|||||+|.++++|+.|+. +|| ..+.|+.|.|..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All--LnG--~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL--LSG--ATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH--hcC--CeeCCceEEEEe
Confidence 57999999999999999999999999999999998753 46899999999999999994 788 788999999999
Q ss_pred ecccCCCCC
Q psy3930 276 RLSFGITPL 284 (299)
Q Consensus 276 k~~~~~~~r 284 (299)
...+..++.
T Consensus 77 a~~~~~p~~ 85 (260)
T PLN03120 77 AEDYQLPPE 85 (260)
T ss_pred ccCCCCCcc
Confidence 887755544
No 56
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.44 E-value=4e-13 Score=94.50 Aligned_cols=70 Identities=43% Similarity=0.752 Sum_probs=62.4
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 199 l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
|||+|||+++++++|.++|+.||.|..+.+..++. |..+|+|||+|.+.++|.+|++. ++| ..++|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~-~~~--~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALEL-LNG--KEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHH-HTT--EEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHH-CCC--cEECCEEcC
Confidence 79999999999999999999999999999999875 89999999999999999999999 776 777787763
No 57
>KOG0126|consensus
Probab=99.42 E-value=3.3e-14 Score=114.52 Aligned_cols=86 Identities=29% Similarity=0.410 Sum_probs=79.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
..++.-|||||||.+.|+.+|-.+|++||+|+.|.++||+.||+++||||..|++..+..-|+.. +|| ..+.|+.|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN-~NG--iki~gRtir 108 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDN-LNG--IKILGRTIR 108 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEec-cCC--ceecceeEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999 999 889999999
Q ss_pred EEeecccCC
Q psy3930 273 TTSRLSFGI 281 (299)
Q Consensus 273 v~~k~~~~~ 281 (299)
|-.-..|..
T Consensus 109 VDHv~~Yk~ 117 (219)
T KOG0126|consen 109 VDHVSNYKK 117 (219)
T ss_pred eeecccccC
Confidence 977655533
No 58
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.40 E-value=1.5e-12 Score=125.62 Aligned_cols=111 Identities=24% Similarity=0.357 Sum_probs=84.6
Q ss_pred HHHHHHHHHhcCccccccccceeeeeecccC---CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCC
Q psy3930 160 PDDVVKALRKSKLLEVTEDGTKVRRTVVVQD---KPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGK 236 (299)
Q Consensus 160 ~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~---~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~ 236 (299)
.++|.+||...++..+...........|.+. .....+++|||+|||.++++++|+++|++||.|..|+|++| .+|.
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~ 97 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQ 97 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCC
Confidence 4677888887777665443322222222211 12345689999999999999999999999999999999999 5999
Q ss_pred cceEEEEEecCHHHHHHHHHhcCCCCCCCC-CCceEEEE
Q psy3930 237 LKGFAFVEFSTKEEAAKALELGLNPCPPDY-QSSILTTT 274 (299)
Q Consensus 237 ~kg~~fV~F~~~~~A~~Al~~~lng~~~~~-~g~~l~v~ 274 (299)
++|||||+|.+.++|++||+. +|| ..+ .++.+.+.
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~-lng--~~i~~Gr~l~V~ 133 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKL-LNN--YEIRPGRLLGVC 133 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHH-cCC--CeecCCcccccc
Confidence 999999999999999999999 887 444 35555443
No 59
>KOG0148|consensus
Probab=99.40 E-value=2.4e-13 Score=115.85 Aligned_cols=75 Identities=28% Similarity=0.551 Sum_probs=70.5
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeec
Q psy3930 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRL 277 (299)
Q Consensus 198 ~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~ 277 (299)
-+||+.|.+.++-+.|++.|.+||+|..+++++|..|++++|||||.|-..++|+.||.. ||| ..+++|.| |.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~-MnG--qWlG~R~I----RT 136 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQ-MNG--QWLGRRTI----RT 136 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHH-hCC--eeecccee----ec
Confidence 589999999999999999999999999999999999999999999999999999999999 999 88888877 55
Q ss_pred cc
Q psy3930 278 SF 279 (299)
Q Consensus 278 ~~ 279 (299)
.|
T Consensus 137 NW 138 (321)
T KOG0148|consen 137 NW 138 (321)
T ss_pred cc
Confidence 55
No 60
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.39 E-value=4.4e-12 Score=122.39 Aligned_cols=115 Identities=24% Similarity=0.320 Sum_probs=93.8
Q ss_pred eeecccccccCCCCHHHHHHHHHhcC--ccccccccceeeeeecccCCC---CCCCcEEEEecCCCCCCHHHHHHHhhcC
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSK--LLEVTEDGTKVRRTVVVQDKP---DVDECTIYVEKLPPEAEHDYIESVFSKY 220 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~--~~~~~~~~~~v~r~~~~~~~~---~~~~~~l~V~nLp~~~t~e~L~~~F~~~ 220 (299)
.|+.|.+ +++|..|++.+. .+.+.++.+.|.++.+..... ....++|||+|||.++++++|+++|++|
T Consensus 185 AFVeF~s-------~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f 257 (578)
T TIGR01648 185 AFVEYES-------HRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEF 257 (578)
T ss_pred EEEEcCC-------HHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4667755 788999988764 356788888888876543321 2345789999999999999999999999
Q ss_pred --CceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeecc
Q psy3930 221 --GKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLS 278 (299)
Q Consensus 221 --G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~~ 278 (299)
|.|..|.+++ +||||+|.+.++|++|++. +|| ..+.|+.|.|.....
T Consensus 258 ~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~-lnG--~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 258 KPGKVERVKKIR--------DYAFVHFEDREDAVKAMDE-LNG--KELEGSEIEVTLAKP 306 (578)
T ss_pred CCCceEEEEeec--------CeEEEEeCCHHHHHHHHHH-hCC--CEECCEEEEEEEccC
Confidence 9999998753 4999999999999999999 998 788999998876543
No 61
>KOG0107|consensus
Probab=99.39 E-value=1.7e-12 Score=104.21 Aligned_cols=75 Identities=31% Similarity=0.459 Sum_probs=68.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
.+.||||||+..+++.+|+..|..||++..|.|.+.+ .|||||+|+++-+|+.|+.. |+| ..+.|..+.|++
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~-LDG--~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRY-LDG--KDICGSRIRVEL 81 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhh-cCC--ccccCceEEEEe
Confidence 6899999999999999999999999999999987754 68999999999999999999 999 888999999988
Q ss_pred ecc
Q psy3930 276 RLS 278 (299)
Q Consensus 276 k~~ 278 (299)
..-
T Consensus 82 S~G 84 (195)
T KOG0107|consen 82 STG 84 (195)
T ss_pred ecC
Confidence 543
No 62
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=99.38 E-value=4.2e-14 Score=96.11 Aligned_cols=58 Identities=36% Similarity=0.587 Sum_probs=51.4
Q ss_pred HHHHhhhhcCCCCcchhHHHHHhhhc--CCCeeeeeeecccccccCC-CCHHHHHHHHHhc
Q psy3930 113 IMNLMEFYLSDSNLRKDRFFSQLLQE--SPEIEVSVFLKCNKLARLT-HDPDDVVKALRKS 170 (299)
Q Consensus 113 i~~q~efyfsd~nL~~d~fl~~~~~~--~~~~~l~~f~~F~~i~~~~-~~~~~a~~Al~~~ 170 (299)
|++|+||||||+||++|.||+.+|.. .||++++++.+|++|+.++ .+.+.+.+|++.+
T Consensus 1 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~~~~~~I~~al~~S 61 (61)
T PF05383_consen 1 IKKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTNTDIELIVDALRDS 61 (61)
T ss_dssp HHHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH--S-HHHHHHHHHTS
T ss_pred ChhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhcCCHHHHHHHHHcC
Confidence 57899999999999999999999998 6899999999999999999 8999999999764
No 63
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.37 E-value=4e-12 Score=108.25 Aligned_cols=81 Identities=19% Similarity=0.178 Sum_probs=71.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
..+.+|||+||++.+|+++|+++|+.||+|..|+|+++. ...|||||+|.++++|+.|+. ||| ..+.+++|.|
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll--LnG--a~l~d~~I~I 75 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL--LSG--ATIVDQRVCI 75 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh--cCC--CeeCCceEEE
Confidence 456899999999999999999999999999999999874 445799999999999999995 899 7788999999
Q ss_pred EeecccCC
Q psy3930 274 TSRLSFGI 281 (299)
Q Consensus 274 ~~k~~~~~ 281 (299)
..-..+..
T Consensus 76 t~~~~y~~ 83 (243)
T PLN03121 76 TRWGQYED 83 (243)
T ss_pred EeCccccc
Confidence 88666544
No 64
>KOG0131|consensus
Probab=99.37 E-value=2.3e-12 Score=104.02 Aligned_cols=120 Identities=18% Similarity=0.296 Sum_probs=103.6
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEE
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTY 225 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~ 225 (299)
-|+.|-+ .++|.-|++-+|++.+.++.+++.++... ......+..+||+||.+.+++..|...|+.||.+..
T Consensus 54 gF~Ef~~-------eedadYAikiln~VkLYgrpIrv~kas~~-~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~ 125 (203)
T KOG0131|consen 54 GFAEFRT-------EEDADYAIKILNMVKLYGRPIRVNKASAH-QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLIS 125 (203)
T ss_pred eEEEEec-------hhhhHHHHHHHHHHHhcCceeEEEecccc-cccccccccccccccCcchhHHHHHHHHHhcccccc
Confidence 4677755 79999999999999999999999988733 334555689999999999999999999999998765
Q ss_pred -EEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 226 -VSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 226 -v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
-.+.++..||.++|||||-|.+.+.+.+|+.. +|| .-+..+++.|...
T Consensus 126 ~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s-~ng--q~l~nr~itv~ya 174 (203)
T KOG0131|consen 126 PPKIMRDPDTGNPKGFGFINYASFEASDAAIGS-MNG--QYLCNRPITVSYA 174 (203)
T ss_pred CCcccccccCCCCCCCeEEechhHHHHHHHHHH-hcc--chhcCCceEEEEE
Confidence 47788888999999999999999999999999 898 7778888888653
No 65
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.37 E-value=1.5e-12 Score=125.91 Aligned_cols=79 Identities=30% Similarity=0.457 Sum_probs=74.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||+++++++|+++|++||+|..|++++++.+|+++|||||+|.+.++|+.|++. +|| ..+.|+.|.|
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~-lnG--~~i~GR~IkV 181 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQ-MNG--QMLGGRNIKV 181 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHh-cCC--eEEecceeee
Confidence 4468999999999999999999999999999999999988999999999999999999999999 899 7888999988
Q ss_pred Ee
Q psy3930 274 TS 275 (299)
Q Consensus 274 ~~ 275 (299)
..
T Consensus 182 ~r 183 (612)
T TIGR01645 182 GR 183 (612)
T ss_pred cc
Confidence 64
No 66
>KOG4213|consensus
Probab=99.36 E-value=1.4e-12 Score=104.67 Aligned_cols=146 Identities=31% Similarity=0.477 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhhhhcCCCCcchhHHHHHhhh--cCCCeeeeeeecccccccCCCCHHHHHHHHHhc--Ccccccccccee
Q psy3930 107 KQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ--ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKS--KLLEVTEDGTKV 182 (299)
Q Consensus 107 ~~~~~~i~~q~efyfsd~nL~~d~fl~~~~~--~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~--~~~~~~~~~~~v 182 (299)
..+.+.|..|++|||+|.||++|+|+++.+. ..+|+++.++..|++.-++++|...+..|+..+ ..++++++..++
T Consensus 11 a~lE~kii~qleyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~lttD~~~Iv~al~ksk~~l~eisedk~k~ 90 (205)
T KOG4213|consen 11 AALEAKIIHQLEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTTDFNVIVEALSKSKAELMEISEDKTKI 90 (205)
T ss_pred hHHHHhhhhhhhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccccHHHHHHHHhhCHHhhhhhhhchhhh
Confidence 6777888999999999999999999999993 457999999999999999999999999999876 457899999888
Q ss_pred eeeecc--cCCC-----CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCC--CcceEEEEEecCHHHHHH
Q psy3930 183 RRTVVV--QDKP-----DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTG--KLKGFAFVEFSTKEEAAK 253 (299)
Q Consensus 183 ~r~~~~--~~~~-----~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g--~~kg~~fV~F~~~~~A~~ 253 (299)
+|..+. ++.. ....+++|.. |.+...++|..+-+ |.+..|.+-+.. .+ ..+|--||.|.+.+.|.+
T Consensus 91 rr~~skplpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a 165 (205)
T KOG4213|consen 91 RRSPSKPLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFA 165 (205)
T ss_pred hcCcCCCCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHh
Confidence 886543 3221 3445677776 44445555555555 788888876543 33 457788999999999999
Q ss_pred HHHh
Q psy3930 254 ALEL 257 (299)
Q Consensus 254 Al~~ 257 (299)
+++.
T Consensus 166 ~~~~ 169 (205)
T KOG4213|consen 166 NDDT 169 (205)
T ss_pred hhhh
Confidence 8876
No 67
>KOG4207|consensus
Probab=99.36 E-value=1.8e-12 Score=106.59 Aligned_cols=78 Identities=29% Similarity=0.468 Sum_probs=74.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
..+|-|.||...++.++|..+|++||.|..|.|++|..|++++|||||.|.+..+|+.|+++ |+| ..++|+.|.|++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~da-mDG--~~ldgRelrVq~ 89 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDA-MDG--AVLDGRELRVQM 89 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHh-hcc--eeeccceeeehh
Confidence 46799999999999999999999999999999999999999999999999999999999999 999 888999999987
Q ss_pred e
Q psy3930 276 R 276 (299)
Q Consensus 276 k 276 (299)
.
T Consensus 90 a 90 (256)
T KOG4207|consen 90 A 90 (256)
T ss_pred h
Confidence 3
No 68
>KOG0117|consensus
Probab=99.35 E-value=7.4e-12 Score=113.48 Aligned_cols=117 Identities=27% Similarity=0.374 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcCc--cccccccceeeeeecccC-CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCC
Q psy3930 160 PDDVVKALRKSKL--LEVTEDGTKVRRTVVVQD-KPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGK 236 (299)
Q Consensus 160 ~~~a~~Al~~~~~--~~~~~~~~~v~r~~~~~~-~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~ 236 (299)
.+++.+||..-.+ +++...+.+-.-..|--+ ...+.+|.||||.||.++.+++|..+|++.|+|-.+|+++|+.+|.
T Consensus 44 ~eaal~al~E~tgy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~ 123 (506)
T KOG0117|consen 44 EEAALKALLERTGYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGD 123 (506)
T ss_pred HHHHHHHHHHhcCceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCC
Confidence 4666677655443 333322222221111111 1246789999999999999999999999999999999999988999
Q ss_pred cceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeecc
Q psy3930 237 LKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLS 278 (299)
Q Consensus 237 ~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~~ 278 (299)
++|||||.|.+.++|++|++. +|++.+. .|+.|+|.+..+
T Consensus 124 nRGYAFVtf~~Ke~Aq~Aik~-lnn~Eir-~GK~igvc~Sva 163 (506)
T KOG0117|consen 124 NRGYAFVTFCTKEEAQEAIKE-LNNYEIR-PGKLLGVCVSVA 163 (506)
T ss_pred CcceEEEEeecHHHHHHHHHH-hhCcccc-CCCEeEEEEeee
Confidence 999999999999999999999 7873322 788888877554
No 69
>KOG0117|consensus
Probab=99.35 E-value=1e-11 Score=112.53 Aligned_cols=108 Identities=22% Similarity=0.322 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHhc--CccccccccceeeeeecccCCC---CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccC
Q psy3930 158 HDPDDVVKALRKS--KLLEVTEDGTKVRRTVVVQDKP---DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFK 232 (299)
Q Consensus 158 ~~~~~a~~Al~~~--~~~~~~~~~~~v~r~~~~~~~~---~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~ 232 (299)
.++.+|+.|-+.+ ..+.+.++.+.|.|+.|..+.. -..-..|||.||+.++|+|.|+++|++||.|..|..++|
T Consensus 216 e~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD- 294 (506)
T KOG0117|consen 216 ESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD- 294 (506)
T ss_pred ecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-
Confidence 5677777776665 4478899999999998765543 233457999999999999999999999999999998866
Q ss_pred CCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 233 STGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 233 ~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
||||+|.+.++|-+|++. +|| ..+.|..|.|.+.
T Consensus 295 -------YaFVHf~eR~davkAm~~-~ng--keldG~~iEvtLA 328 (506)
T KOG0117|consen 295 -------YAFVHFAEREDAVKAMKE-TNG--KELDGSPIEVTLA 328 (506)
T ss_pred -------eeEEeecchHHHHHHHHH-hcC--ceecCceEEEEec
Confidence 899999999999999999 999 8999999999764
No 70
>KOG0123|consensus
Probab=99.34 E-value=1.8e-11 Score=112.89 Aligned_cols=129 Identities=18% Similarity=0.305 Sum_probs=104.1
Q ss_pred HHHHhhhcCCC-eeeeeeecccccccCC------CCHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEec
Q psy3930 131 FFSQLLQESPE-IEVSVFLKCNKLARLT------HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEK 203 (299)
Q Consensus 131 fl~~~~~~~~~-~~l~~f~~F~~i~~~~------~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~n 203 (299)
-|...+...+. +.+.+-... + ++. .++++|.+||..+|...+.++.+++-+....+ ..+||.|
T Consensus 14 ~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~-------~~~~i~n 83 (369)
T KOG0123|consen 14 MLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP-------SLVFIKN 83 (369)
T ss_pred HHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC-------ceeeecC
Confidence 34445555554 444444444 3 444 67999999999999999999999987654322 2399999
Q ss_pred CCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 204 LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 204 Lp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
|+++++..+|.++|+.||+|.+|.+.++. .| ++|| ||+|+++++|.+|++. +|| ..+.+..+.+-.
T Consensus 84 l~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~-~ng--~ll~~kki~vg~ 149 (369)
T KOG0123|consen 84 LDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEK-LNG--MLLNGKKIYVGL 149 (369)
T ss_pred CCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHH-hcC--cccCCCeeEEee
Confidence 99999999999999999999999999986 66 8999 9999999999999999 998 677777777744
No 71
>KOG0130|consensus
Probab=99.33 E-value=4.8e-12 Score=97.30 Aligned_cols=84 Identities=27% Similarity=0.430 Sum_probs=77.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
...+..|||.|+++.+++++|...|..||+|..+.+..|+-||..+||+.|+|++.+.|++|+.+ +|| ..+.|..+.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~-~Ng--~~ll~q~v~ 145 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDA-LNG--AELLGQNVS 145 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHh-ccc--hhhhCCcee
Confidence 56689999999999999999999999999999999999988999999999999999999999999 999 888899888
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|-.....
T Consensus 146 VDw~Fv~ 152 (170)
T KOG0130|consen 146 VDWCFVK 152 (170)
T ss_pred EEEEEec
Confidence 8765544
No 72
>KOG0127|consensus
Probab=99.33 E-value=4.2e-12 Score=117.56 Aligned_cols=116 Identities=28% Similarity=0.441 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCccccccccceeeeeeccc-----------------CC-----C--CCCCcEEEEecCCCCCCHHHHHH
Q psy3930 160 PDDVVKALRKSKLLEVTEDGTKVRRTVVVQ-----------------DK-----P--DVDECTIYVEKLPPEAEHDYIES 215 (299)
Q Consensus 160 ~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~-----------------~~-----~--~~~~~~l~V~nLp~~~t~e~L~~ 215 (299)
.+++++|+...+...+.++.+.+..+.+.. ++ . ......|.|.|||+.+...+|+.
T Consensus 57 ~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~ 136 (678)
T KOG0127|consen 57 EEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKN 136 (678)
T ss_pred HhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHH
Confidence 688999999888888888877665433211 00 1 22367899999999999999999
Q ss_pred HhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeeccc
Q psy3930 216 VFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLSF 279 (299)
Q Consensus 216 ~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~~~ 279 (299)
+|+.||.|..|.||+.. .|...|||||.|....+|..|++. +|| ..+.|+++.|-..++.
T Consensus 137 vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~-~N~--~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 137 VFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEF-FNG--NKIDGRPVAVDWAVDK 196 (678)
T ss_pred HHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHh-ccC--ceecCceeEEeeeccc
Confidence 99999999999999765 677779999999999999999999 999 8899999988665543
No 73
>smart00362 RRM_2 RNA recognition motif.
Probab=99.32 E-value=9.7e-12 Score=86.50 Aligned_cols=71 Identities=42% Similarity=0.736 Sum_probs=64.0
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 198 ~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
+|||+|||..++.++|+++|.+||++..+.+..+. +.++|+|||+|.+.++|++|++. ++| ..+.|+.+.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~-~~~--~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEA-LNG--TKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHH-hCC--cEECCEEEee
Confidence 58999999999999999999999999999998765 77889999999999999999998 887 6667877765
No 74
>KOG0147|consensus
Probab=99.32 E-value=1.6e-12 Score=120.57 Aligned_cols=118 Identities=26% Similarity=0.319 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeeccc-------C----C-CCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEE
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ-------D----K-PDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTY 225 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~-------~----~-~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~ 225 (299)
.|.+.+..|| .+.|-.+-+-.+.|....... . . ...+...+|||||++++++++|+.+|+.||.|..
T Consensus 229 ~D~~sVp~ai-aLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~ 307 (549)
T KOG0147|consen 229 CDEQSVPLAI-ALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIEN 307 (549)
T ss_pred ecccchhhHh-hhcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccccee
Confidence 4567777777 555555555565554322110 0 0 0122334999999999999999999999999999
Q ss_pred EEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeeccc
Q psy3930 226 VSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLSF 279 (299)
Q Consensus 226 v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~~~ 279 (299)
|.+++|..+|.++|||||+|...++|.+|+.+ +|| +.+.|+.|+|-.....
T Consensus 308 v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~-lng--felAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 308 VQLTKDSETGRSKGFGFITFVNKEDARKALEQ-LNG--FELAGRLIKVSVVTER 358 (549)
T ss_pred eeeccccccccccCcceEEEecHHHHHHHHHH-hcc--ceecCceEEEEEeeee
Confidence 99999988999999999999999999999999 999 9999999998765443
No 75
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.30 E-value=4.2e-12 Score=122.87 Aligned_cols=115 Identities=18% Similarity=0.279 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccCC--------------------------CCCCCcEEEEecCCCCC---
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDK--------------------------PDVDECTIYVEKLPPEA--- 208 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~--------------------------~~~~~~~l~V~nLp~~~--- 208 (299)
.+.++|..|+..+++..+.+..+.|.++...... ......+|++.|+...-
T Consensus 345 ~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~ 424 (509)
T TIGR01642 345 KDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLM 424 (509)
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhc
Confidence 3489999999999999999999888775321100 01235678999986421
Q ss_pred -------CHHHHHHHhhcCCceEEEEeeccC---CCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 209 -------EHDYIESVFSKYGKVTYVSLPKFK---STGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 209 -------t~e~L~~~F~~~G~i~~v~i~~~~---~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
..++|++.|++||.|..|.|+++. .++...|++||+|.+.++|++|+.. ||| ..++|+.|.+..
T Consensus 425 ~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~-lnG--r~~~gr~v~~~~ 498 (509)
T TIGR01642 425 DDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEG-MNG--RKFNDRVVVAAF 498 (509)
T ss_pred CcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHH-cCC--CEECCeEEEEEE
Confidence 236899999999999999998753 3456789999999999999999999 999 888999998765
No 76
>KOG0144|consensus
Probab=99.28 E-value=7.2e-12 Score=113.09 Aligned_cols=88 Identities=30% Similarity=0.414 Sum_probs=74.1
Q ss_pred ccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCC
Q psy3930 188 VQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQ 267 (299)
Q Consensus 188 ~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~ 267 (299)
..+..+.+.-++|||.+|..++|.+|+++|++||.|..|.+++|+.+|.++|||||.|.+.++|.+|+.++.|-..+...
T Consensus 26 ~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 26 HTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred CCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 33444566678999999999999999999999999999999999999999999999999999999999997776444444
Q ss_pred CceEEEEe
Q psy3930 268 SSILTTTS 275 (299)
Q Consensus 268 g~~l~v~~ 275 (299)
.+++.|+.
T Consensus 106 ~~pvqvk~ 113 (510)
T KOG0144|consen 106 HHPVQVKY 113 (510)
T ss_pred Ccceeecc
Confidence 44444443
No 77
>PLN03213 repressor of silencing 3; Provisional
Probab=99.28 E-value=1.6e-11 Score=112.53 Aligned_cols=76 Identities=21% Similarity=0.311 Sum_probs=68.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCH--HHHHHHHHhcCCCCCCCCCCceE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTK--EEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~--~~A~~Al~~~lng~~~~~~g~~l 271 (299)
....+||||||++++++++|...|+.||.|..|.|++. +| +|||||+|... .++.+|+.. ||| ..++|+.|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISa-LNG--AEWKGR~L 80 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFST-YNG--CVWKGGRL 80 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHH-hcC--CeecCcee
Confidence 34578999999999999999999999999999999954 67 89999999987 789999999 999 88899999
Q ss_pred EEEee
Q psy3930 272 TTTSR 276 (299)
Q Consensus 272 ~v~~k 276 (299)
+|...
T Consensus 81 KVNKA 85 (759)
T PLN03213 81 RLEKA 85 (759)
T ss_pred EEeec
Confidence 99653
No 78
>smart00360 RRM RNA recognition motif.
Probab=99.27 E-value=2.3e-11 Score=84.23 Aligned_cols=70 Identities=46% Similarity=0.721 Sum_probs=63.5
Q ss_pred EecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 201 VEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 201 V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
|+|||..+++++|+.+|++||.|..+.+..+..++.++|+|||+|.+.++|..|+.. ++| ..+.|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~-~~~--~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEA-LNG--KELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHH-cCC--CeeCCcEEEe
Confidence 579999999999999999999999999998877789999999999999999999998 887 6667887765
No 79
>KOG0105|consensus
Probab=99.24 E-value=3.3e-11 Score=97.53 Aligned_cols=78 Identities=29% Similarity=0.417 Sum_probs=68.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
..++|||+|||.++-+.+|+.+|-+||.|..|.+... -...+||||+|+++-+|+.||.. -+| +.+.|..|+|+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiyg-RdG--Ydydg~rLRVE 78 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYG-RDG--YDYDGCRLRVE 78 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhc-ccc--cccCcceEEEE
Confidence 4689999999999999999999999999999988532 23467999999999999999998 999 99999999998
Q ss_pred eecc
Q psy3930 275 SRLS 278 (299)
Q Consensus 275 ~k~~ 278 (299)
....
T Consensus 79 fprg 82 (241)
T KOG0105|consen 79 FPRG 82 (241)
T ss_pred eccC
Confidence 8543
No 80
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.23 E-value=3.7e-11 Score=114.76 Aligned_cols=80 Identities=31% Similarity=0.365 Sum_probs=73.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||..+++++|+++|++||.|..|.++.+..+|.++|||||+|.+.++|.+|+. ++| ..+.|++|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~--l~g--~~~~g~~i~ 161 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA--LTG--QMLLGRPII 161 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH--hCC--CEECCeeeE
Confidence 3456899999999999999999999999999999999998899999999999999999999997 677 778899988
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
+...
T Consensus 162 v~~~ 165 (457)
T TIGR01622 162 VQSS 165 (457)
T ss_pred Eeec
Confidence 8764
No 81
>KOG0114|consensus
Probab=99.23 E-value=6.3e-11 Score=87.10 Aligned_cols=76 Identities=21% Similarity=0.334 Sum_probs=67.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
..++.|||.|||..+|.++.-++|++||.|..|++-.. ...+|.|||.|++..+|.+|+.+ |+| ..+.++.+.|
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dh-lsg--~n~~~ryl~v 89 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDH-LSG--YNVDNRYLVV 89 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHH-hcc--cccCCceEEE
Confidence 34678999999999999999999999999999999754 44589999999999999999999 999 8888999887
Q ss_pred Ee
Q psy3930 274 TS 275 (299)
Q Consensus 274 ~~ 275 (299)
-.
T Consensus 90 ly 91 (124)
T KOG0114|consen 90 LY 91 (124)
T ss_pred Ee
Confidence 43
No 82
>KOG0125|consensus
Probab=99.22 E-value=3.2e-11 Score=105.55 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=72.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...+.|+|+|||+..-+.||+.+|++||.|..|.|+-+ ...+||||||+|++.++|++|-++ |+| ..+.||+|.|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~-LHg--t~VEGRkIEV 168 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAE-LHG--TVVEGRKIEV 168 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHH-hhc--ceeeceEEEE
Confidence 34578999999999999999999999999999999976 345799999999999999999999 999 8889999999
Q ss_pred Eeeccc
Q psy3930 274 TSRLSF 279 (299)
Q Consensus 274 ~~k~~~ 279 (299)
....+.
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 765544
No 83
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.21 E-value=6.1e-11 Score=104.03 Aligned_cols=79 Identities=35% Similarity=0.577 Sum_probs=75.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
.++|||+|||.++++++|.++|..||.+..+.++.++.+|.++|||||+|.+.++|..|+.. ++| ..+.|+++.|..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~-~~~--~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEE-LNG--KELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHH-cCC--CeECCceeEeec
Confidence 58999999999999999999999999999999999988999999999999999999999999 888 889999999988
Q ss_pred ec
Q psy3930 276 RL 277 (299)
Q Consensus 276 k~ 277 (299)
..
T Consensus 192 ~~ 193 (306)
T COG0724 192 AQ 193 (306)
T ss_pred cc
Confidence 54
No 84
>KOG0111|consensus
Probab=99.19 E-value=2.2e-11 Score=101.02 Aligned_cols=80 Identities=25% Similarity=0.451 Sum_probs=73.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++||||+|..++++.-|...|-+||.|..|.+|.|..+++.+|||||+|...++|.+|+.. +|+ -.+-|+.|+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDN-Mne--sEL~Grtir 83 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDN-MNE--SELFGRTIR 83 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhc-Cch--hhhcceeEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999 998 778888887
Q ss_pred EEe
Q psy3930 273 TTS 275 (299)
Q Consensus 273 v~~ 275 (299)
|-.
T Consensus 84 VN~ 86 (298)
T KOG0111|consen 84 VNL 86 (298)
T ss_pred Eee
Confidence 654
No 85
>KOG0131|consensus
Probab=99.19 E-value=2.6e-11 Score=98.01 Aligned_cols=80 Identities=26% Similarity=0.454 Sum_probs=74.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
...+|||+||++.++++.|.++|-+.|+|..+.+++++.+...+||||++|.++++|+-|++- +|+ ..+-|++|+|.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAiki-ln~--VkLYgrpIrv~ 84 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKI-LNM--VKLYGRPIRVN 84 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHH-HHH--HHhcCceeEEE
Confidence 457999999999999999999999999999999999999999999999999999999999998 887 88889999987
Q ss_pred eec
Q psy3930 275 SRL 277 (299)
Q Consensus 275 ~k~ 277 (299)
...
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 644
No 86
>KOG0108|consensus
Probab=99.19 E-value=4.5e-11 Score=111.40 Aligned_cols=80 Identities=30% Similarity=0.469 Sum_probs=76.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
+.+||||+|+++++++|..+|+..|.|..++++.|+.+|.++||||++|.+.++|..|++. +|| .++.|++|+|..+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~-lNg--~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRN-LNG--AEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHh-cCC--cccCCceEEeecc
Confidence 8999999999999999999999999999999999999999999999999999999999999 999 9999999999876
Q ss_pred ccc
Q psy3930 277 LSF 279 (299)
Q Consensus 277 ~~~ 279 (299)
...
T Consensus 96 ~~~ 98 (435)
T KOG0108|consen 96 SNR 98 (435)
T ss_pred ccc
Confidence 554
No 87
>KOG1855|consensus
Probab=99.18 E-value=1.5e-11 Score=110.98 Aligned_cols=119 Identities=32% Similarity=0.419 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHhhhhcCCCCcchhHHHHHhhhcCC--CeeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceee
Q psy3930 106 KKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESP--EIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVR 183 (299)
Q Consensus 106 ~~~~~~~i~~q~efyfsd~nL~~d~fl~~~~~~~~--~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~ 183 (299)
.+++..+|..|+||||||+||.+|.||..+++++. +|+++++++|++|+.++.++..+..||+.+..+++++++.+|+
T Consensus 137 sedl~~kIv~QVEyyFSDenL~~d~fLlkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~va~ALr~S~kL~vseDgkKVr 216 (484)
T KOG1855|consen 137 SEDLAAKIVDQVEYYFSDENLLKDAFLLKHVRRNKEGYVPVKLVASFKKVKALTRDWKLVADALRKSSKLEVSEDGKKVR 216 (484)
T ss_pred cHHHHHHHHHHhheeeccccccchHHHHHHHhcCCCCceeeehhhhHHHHHHHhhhhHHHHHHHhhcceEEEccCCceee
Confidence 47888999999999999999999999999999875 5999999999999999999999999999999999999999999
Q ss_pred eeecccCCCCCCCcEEEEecCC------CCCCHHHHHHHh-hcCCceEEEEeeccC
Q psy3930 184 RTVVVQDKPDVDECTIYVEKLP------PEAEHDYIESVF-SKYGKVTYVSLPKFK 232 (299)
Q Consensus 184 r~~~~~~~~~~~~~~l~V~nLp------~~~t~e~L~~~F-~~~G~i~~v~i~~~~ 232 (299)
|..|.++. =..+|| .+..++...+-. .-||.+-.|..++.-
T Consensus 217 RisPlp~~--------~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIc 264 (484)
T KOG1855|consen 217 RISPLPEF--------DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRIC 264 (484)
T ss_pred ecCCCCCc--------cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeec
Confidence 98877752 122344 333444444444 448888888777754
No 88
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.18 E-value=2.3e-10 Score=79.91 Aligned_cols=73 Identities=42% Similarity=0.669 Sum_probs=64.7
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 198 ~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
+|+|+|||..+++++|+.+|+.||.|..+.+..+. .+.++|+|||+|.+.++|..|++. ++| ..++|+.+.+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~-~~~--~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEA-LNG--KELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHH-hCC--CeECCeEEEEe
Confidence 48999999999999999999999999999998876 446789999999999999999999 887 55778887664
No 89
>KOG0145|consensus
Probab=99.17 E-value=7.5e-11 Score=100.25 Aligned_cols=87 Identities=25% Similarity=0.426 Sum_probs=74.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
+.....+.|.-||..+|+++++.+|+..|+|++|.++||+.+|++-|||||.|.++++|++|+.. +|| +.+....|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~Aint-lNG--LrLQ~KTI- 113 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINT-LNG--LRLQNKTI- 113 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhh-hcc--eeeccceE-
Confidence 34456799999999999999999999999999999999999999999999999999999999999 999 55555555
Q ss_pred EEeecccCCCCCCC
Q psy3930 273 TTSRLSFGITPLGF 286 (299)
Q Consensus 273 v~~k~~~~~~~r~~ 286 (299)
|++|++|....
T Consensus 114 ---KVSyARPSs~~ 124 (360)
T KOG0145|consen 114 ---KVSYARPSSDS 124 (360)
T ss_pred ---EEEeccCChhh
Confidence 55666555443
No 90
>KOG0110|consensus
Probab=99.16 E-value=7e-11 Score=112.68 Aligned_cols=115 Identities=23% Similarity=0.342 Sum_probs=96.7
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccC-------CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeecc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD-------KPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKF 231 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~-------~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~ 231 (299)
+.++|+.|++.+++..|.|..+.++.+...+. ........|+|.|+|+.++..+++.+|..||.+..|++|.-
T Consensus 569 ~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK 648 (725)
T KOG0110|consen 569 KPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK 648 (725)
T ss_pred CHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchh
Confidence 38999999999999999999998877651111 01233568999999999999999999999999999999986
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 232 KSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 232 ~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
...+.++|||||+|-++.+|..|+.+ |.+ .++-|+.|.++..
T Consensus 649 ~~k~a~rGF~Fv~f~t~~ea~nA~~a-l~S--THlyGRrLVLEwA 690 (725)
T KOG0110|consen 649 IGKGAHRGFGFVDFLTPREAKNAFDA-LGS--THLYGRRLVLEWA 690 (725)
T ss_pred hcchhhccceeeeccCcHHHHHHHHh-hcc--cceechhhheehh
Confidence 55677899999999999999999999 555 8888998887654
No 91
>KOG0146|consensus
Probab=99.15 E-value=5.1e-11 Score=101.61 Aligned_cols=87 Identities=18% Similarity=0.299 Sum_probs=80.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 192 PDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 192 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
+.+++|+|||-.||.+....+|...|-.||.|.+..+-.|+.|+.+++||||.|+++.+|+.||.+ +|| ..++-.+|
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqA-MNG--FQIGMKRL 357 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA-MNG--FQIGMKRL 357 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHH-hcc--hhhhhhhh
Confidence 468899999999999999999999999999999999888999999999999999999999999999 999 89999999
Q ss_pred EEEeecccCC
Q psy3930 272 TTTSRLSFGI 281 (299)
Q Consensus 272 ~v~~k~~~~~ 281 (299)
+|++|..+..
T Consensus 358 KVQLKRPkda 367 (371)
T KOG0146|consen 358 KVQLKRPKDA 367 (371)
T ss_pred hhhhcCcccc
Confidence 9988766543
No 92
>smart00361 RRM_1 RNA recognition motif.
Probab=99.08 E-value=4.6e-10 Score=79.02 Aligned_cols=61 Identities=21% Similarity=0.345 Sum_probs=52.9
Q ss_pred HHHHHHHhh----cCCceEEEE-eeccCCC--CCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 210 HDYIESVFS----KYGKVTYVS-LPKFKST--GKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 210 ~e~L~~~F~----~~G~i~~v~-i~~~~~~--g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
+++|+++|+ +||.|..|. ++.++.+ |.++|||||+|.+.++|.+|++. ||| ..+.|++|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~-l~g--~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVD-LNG--RYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHH-hCC--CEECCEEEEe
Confidence 578888888 999999985 6666555 89999999999999999999999 998 7888888865
No 93
>KOG0123|consensus
Probab=99.08 E-value=1.6e-10 Score=106.56 Aligned_cols=113 Identities=26% Similarity=0.369 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccCCC------CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeecc
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP------DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKF 231 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~------~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~ 231 (299)
.++++|.+|+..+|+..+.++++.+.......++. ......+|+.+++.+.+.+.|..+|..+|.|..+.++.+
T Consensus 123 ~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~ 202 (369)
T KOG0123|consen 123 ESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRD 202 (369)
T ss_pred CCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeec
Confidence 44899999999999999999999887655433322 233567999999999999999999999999999999988
Q ss_pred CCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 232 KSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 232 ~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
. .|.++|||||.|.+.++|..|++. ++| ..+.+..+.|.
T Consensus 203 ~-~g~~~~~gfv~f~~~e~a~~av~~-l~~--~~~~~~~~~V~ 241 (369)
T KOG0123|consen 203 S-IGKSKGFGFVNFENPEDAKKAVET-LNG--KIFGDKELYVG 241 (369)
T ss_pred C-CCCCCCccceeecChhHHHHHHHh-ccC--CcCCccceeec
Confidence 6 777999999999999999999999 998 55556665553
No 94
>KOG0124|consensus
Probab=99.03 E-value=2.3e-10 Score=101.49 Aligned_cols=78 Identities=31% Similarity=0.464 Sum_probs=72.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
.-.|.||||.+.++..++.|+..|..||+|.+|.+-.|..||+++||+||+|+-++.|+-|++. +|| ..++|+.|+|
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEq-MNg--~mlGGRNiKV 187 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQ-MNG--QMLGGRNIKV 187 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHH-hcc--ccccCccccc
Confidence 3468999999999999999999999999999999999999999999999999999999999999 999 7777888877
Q ss_pred E
Q psy3930 274 T 274 (299)
Q Consensus 274 ~ 274 (299)
-
T Consensus 188 g 188 (544)
T KOG0124|consen 188 G 188 (544)
T ss_pred c
Confidence 4
No 95
>KOG4212|consensus
Probab=99.00 E-value=1.2e-09 Score=99.09 Aligned_cols=79 Identities=28% Similarity=0.436 Sum_probs=72.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhh-cCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFS-KYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~-~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
...+.+||.|+|+++.|++|+.+|. +.|+|++|.+..|. +|+.+|||.|+|++++.+++|++. ||. +.++|++|.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~-lnk--~~~~GR~l~ 117 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEK-LNK--YEVNGRELV 117 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHH-hhh--ccccCceEE
Confidence 3456799999999999999999996 58999999999987 999999999999999999999999 887 899999999
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
|+--
T Consensus 118 vKEd 121 (608)
T KOG4212|consen 118 VKED 121 (608)
T ss_pred Eecc
Confidence 9653
No 96
>KOG4205|consensus
Probab=98.92 E-value=6.1e-10 Score=99.67 Aligned_cols=114 Identities=23% Similarity=0.417 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcCccccccccceeeeeecccCCCCCC----CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCC
Q psy3930 160 PDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVD----ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTG 235 (299)
Q Consensus 160 ~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~----~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g 235 (299)
.+.+.+++ ......+.++.+.+.++.+..+..... ...|||++||+++++++++++|.+||.|..+.++.|..+.
T Consensus 58 ~~~v~~vl-~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~ 136 (311)
T KOG4205|consen 58 PEGVDAVL-NARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTS 136 (311)
T ss_pred Ccchheee-cccccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccc
Confidence 34455555 334456788888777777766554333 4589999999999999999999999999999999999999
Q ss_pred CcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeecc
Q psy3930 236 KLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLS 278 (299)
Q Consensus 236 ~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~~ 278 (299)
+.+|||||.|.+++++.+++.. +-+.++++.+.|+....
T Consensus 137 ~~rgFgfv~~~~e~sVdkv~~~----~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 137 RPRGFGFVTFDSEDSVDKVTLQ----KFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ccccceeeEeccccccceeccc----ceeeecCceeeEeeccc
Confidence 9999999999999999999876 44778888888866543
No 97
>KOG0109|consensus
Probab=98.89 E-value=2.9e-09 Score=92.08 Aligned_cols=76 Identities=24% Similarity=0.376 Sum_probs=67.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
..+||||||..+++.+|+.+|++||+|..|+|+++ ||||+.++...|+.|+.. |+| ..+.|..|.|+-.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairN-Lhg--YtLhg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRN-LHG--YTLHGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhh-ccc--ceecceEEEEEec
Confidence 36899999999999999999999999999999865 899999999999999999 898 8888999999876
Q ss_pred cccCCCC
Q psy3930 277 LSFGITP 283 (299)
Q Consensus 277 ~~~~~~~ 283 (299)
.++.++.
T Consensus 72 ksKsk~s 78 (346)
T KOG0109|consen 72 KSKSKAS 78 (346)
T ss_pred cccCCCc
Confidence 6554333
No 98
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.87 E-value=7.8e-09 Score=69.28 Aligned_cols=55 Identities=40% Similarity=0.648 Sum_probs=47.5
Q ss_pred HHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 213 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 213 L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
|.++|++||+|..+.+.... +++|||+|.+.++|..|++. +|| ..+.|++|.|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~-l~~--~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQ-LNG--RQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHH-HTT--SEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHH-hCC--CEECCcEEEEEE
Confidence 67899999999999997653 57999999999999999999 898 778999988764
No 99
>KOG4208|consensus
Probab=98.86 E-value=9.7e-09 Score=84.90 Aligned_cols=79 Identities=33% Similarity=0.432 Sum_probs=70.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcC-CceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKY-GKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~-G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
.....+|+..+|..+.+.++..+|.+| |.+..+++-|++.||.++|||||+|++++.|.-|-+. ||+ +-+.++.|.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAET-MNN--YLl~e~lL~ 123 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAET-MNN--YLLMEHLLE 123 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHH-hhh--hhhhhheee
Confidence 445678999999999999999999998 6888899989999999999999999999999999999 887 777788887
Q ss_pred EEe
Q psy3930 273 TTS 275 (299)
Q Consensus 273 v~~ 275 (299)
+..
T Consensus 124 c~v 126 (214)
T KOG4208|consen 124 CHV 126 (214)
T ss_pred eEE
Confidence 654
No 100
>KOG0153|consensus
Probab=98.83 E-value=1.1e-08 Score=90.41 Aligned_cols=80 Identities=30% Similarity=0.392 Sum_probs=69.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
+....+|||+||-..+++.+|+..|.+||+|.++++... +++|||+|.+.++|+.|.++++|. +.++|.+|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~--lvI~G~Rl~ 296 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNK--LVINGFRLK 296 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcce--eeecceEEE
Confidence 556689999999999999999999999999999998764 358999999999999999997874 888999887
Q ss_pred EEeecccCCCCC
Q psy3930 273 TTSRLSFGITPL 284 (299)
Q Consensus 273 v~~k~~~~~~~r 284 (299)
+. |+.+.+
T Consensus 297 i~----Wg~~~~ 304 (377)
T KOG0153|consen 297 IK----WGRPKQ 304 (377)
T ss_pred EE----eCCCcc
Confidence 76 666544
No 101
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=5.6e-10 Score=100.30 Aligned_cols=54 Identities=22% Similarity=0.422 Sum_probs=52.0
Q ss_pred CeeecCCCCcCcChHHHHhhccCCCEEeeeeecchhhhhccCCHHHHHHHHhcC
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKS 54 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s 54 (299)
||||||.+||+.|.|||++|+++|+||+++|..|.|..++..|.++|.+||+.+
T Consensus 278 iEyYFseenl~~d~~lrkk~~kaGf~plsfi~kf~Rn~Sf~gd~nLilaa~ke~ 331 (438)
T COG5193 278 IEYYFSEENLKSDEFLRKKFKKAGFIPLSFIGKFYRNLSFGGDKNLILAAMKEV 331 (438)
T ss_pred hHhhhhHHhhhhhhHHHhhhhhcccccHhhhhhhhhccccCCchhhhHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999965
No 102
>KOG0116|consensus
Probab=98.79 E-value=2.3e-08 Score=92.94 Aligned_cols=80 Identities=26% Similarity=0.425 Sum_probs=68.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
..+|||+|||.+++..+|+++|..||.|...+|..-...+...+||||+|.+.++++.|+.+ .++.++++.+.|+-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A----sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA----SPLEIGGRKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc----CccccCCeeEEEEe
Confidence 45699999999999999999999999999888765432344449999999999999999998 36899999999988
Q ss_pred eccc
Q psy3930 276 RLSF 279 (299)
Q Consensus 276 k~~~ 279 (299)
|...
T Consensus 364 k~~~ 367 (419)
T KOG0116|consen 364 KRPG 367 (419)
T ss_pred cccc
Confidence 7653
No 103
>KOG2590|consensus
Probab=98.74 E-value=2e-09 Score=100.06 Aligned_cols=58 Identities=36% Similarity=0.563 Sum_probs=53.4
Q ss_pred CeeecCCCCcCcChHHHHhhccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCc
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDG 63 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~ 63 (299)
||||||.+||++|.|+++ +||||.+|++|+||..|+.|+++|.+||+.|.+|++..|-
T Consensus 308 ie~~FSeE~~~~d~~n~~-----k~~~l~~ia~F~r~ad~s~d~nli~~alr~s~ive~~~d~ 365 (448)
T KOG2590|consen 308 IEFYFSEENLQRDRFNRE-----KFVPLRVIAKFKRVADLSSDINLILAALRNSLIVEETGDL 365 (448)
T ss_pred cccccchHHHhhhhhhhc-----ccchhhhhhhhhhhhhcccCHHHHHHHHhhhhhhhccchh
Confidence 699999999999999887 4578999999999999999999999999999998887763
No 104
>KOG0415|consensus
Probab=98.73 E-value=2e-08 Score=89.03 Aligned_cols=81 Identities=23% Similarity=0.378 Sum_probs=73.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
.++...|||-.|.+-++.++|.-+|+.||.|..|.+++|..||.+..||||+|++.+++++|.-+ |++ .-+.++.|-
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFK-MdN--vLIDDrRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFK-MDN--VLIDDRRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhh-hcc--eeeccceEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999 665 777888888
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
|-..
T Consensus 313 VDFS 316 (479)
T KOG0415|consen 313 VDFS 316 (479)
T ss_pred eehh
Confidence 8543
No 105
>KOG4205|consensus
Probab=98.70 E-value=1.9e-08 Score=90.11 Aligned_cols=81 Identities=23% Similarity=0.385 Sum_probs=72.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
+.+++||++|+++++++.|++.|.+||+|..|.+++++.+++++||+||+|++.+...+++.. ..+.+.|+.+.++
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~----~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA----RTHKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc----cccccCCccccce
Confidence 578999999999999999999999999999999999999999999999999998888888765 3477888888777
Q ss_pred eeccc
Q psy3930 275 SRLSF 279 (299)
Q Consensus 275 ~k~~~ 279 (299)
.....
T Consensus 81 ~av~r 85 (311)
T KOG4205|consen 81 RAVSR 85 (311)
T ss_pred eccCc
Confidence 66554
No 106
>KOG4206|consensus
Probab=98.67 E-value=7.6e-08 Score=80.83 Aligned_cols=76 Identities=29% Similarity=0.433 Sum_probs=68.1
Q ss_pred CcEEEEecCCCCCCHHHHHH----HhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 196 ECTIYVEKLPPEAEHDYIES----VFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~----~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
+.||||.||++.+..++|+. +|++||.|..|...+ +.+.+|-|||.|.+.+.|-.|+.+ ++| .-+-|.++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~-l~g--fpFygK~m 82 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRA-LQG--FPFYGKPM 82 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHH-hcC--CcccCchh
Confidence 34999999999999999988 999999999988754 777899999999999999999999 999 88889999
Q ss_pred EEEeec
Q psy3930 272 TTTSRL 277 (299)
Q Consensus 272 ~v~~k~ 277 (299)
+++...
T Consensus 83 riqyA~ 88 (221)
T KOG4206|consen 83 RIQYAK 88 (221)
T ss_pred heeccc
Confidence 887654
No 107
>KOG0132|consensus
Probab=98.61 E-value=7.8e-08 Score=92.97 Aligned_cols=89 Identities=17% Similarity=0.339 Sum_probs=69.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
..++|||||+|+..+++.+|..+|+.||+|.+|.++.. +|||||......+|.+|+.+ |+. ..+.+..|
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqk-l~n--~kv~~k~I-- 487 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQK-LSN--VKVADKTI-- 487 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHH-Hhc--ccccceee--
Confidence 45789999999999999999999999999999998754 67999999999999999999 665 55555555
Q ss_pred EeecccCCCCCCCCCCCCcccC
Q psy3930 274 TSRLSFGITPLGFESGGWWFKS 295 (299)
Q Consensus 274 ~~k~~~~~~~r~~~~g~~~~~~ 295 (299)
|..|+...+-...-..+|..
T Consensus 488 --ki~Wa~g~G~kse~k~~wD~ 507 (894)
T KOG0132|consen 488 --KIAWAVGKGPKSEYKDYWDV 507 (894)
T ss_pred --EEeeeccCCcchhhhhhhhc
Confidence 45554433333333445554
No 108
>KOG0146|consensus
Probab=98.60 E-value=1.1e-07 Score=81.55 Aligned_cols=79 Identities=27% Similarity=0.395 Sum_probs=67.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCC-CCCCCceEEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCP-PDYQSSILTT 273 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~-~~~~g~~l~v 273 (299)
+.+++|||-|...-.|++++.+|..||.|.+|.+.+.. .|.++||+||.|.+..+|+.||.. ++|.. .-.....|.|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~a-LHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINA-LHGSQTMPGASSSLVV 95 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHH-hcccccCCCCccceEE
Confidence 56899999999999999999999999999999999987 899999999999999999999999 77632 2333445555
Q ss_pred Ee
Q psy3930 274 TS 275 (299)
Q Consensus 274 ~~ 275 (299)
+.
T Consensus 96 K~ 97 (371)
T KOG0146|consen 96 KF 97 (371)
T ss_pred Ee
Confidence 54
No 109
>KOG0533|consensus
Probab=98.58 E-value=2.8e-07 Score=79.65 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=72.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
...|+|.|||..++.++|+++|..||.+..+.+..++ .|.+.|.|-|.|...++|.+|++. +|| ..++|+++.+.+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~-~~g--v~ldG~~mk~~~ 158 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKK-YNG--VALDGRPMKIEI 158 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHH-hcC--cccCCceeeeEE
Confidence 4689999999999999999999999999999888887 899999999999999999999999 998 888899988876
Q ss_pred ecc
Q psy3930 276 RLS 278 (299)
Q Consensus 276 k~~ 278 (299)
...
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 543
No 110
>KOG4212|consensus
Probab=98.55 E-value=1.8e-07 Score=85.14 Aligned_cols=75 Identities=27% Similarity=0.459 Sum_probs=66.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....|+|||.|||.++||+.|++-|..||.|.++.|. ..|+++| .|.|.++++|+.|+.. +|| ..+.|+.|.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~-Mng--s~l~Gr~I~ 604 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACAL-MNG--SRLDGRNIK 604 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHH-hcc--CcccCceee
Confidence 3567899999999999999999999999999999983 3677775 9999999999999998 999 788899988
Q ss_pred EEe
Q psy3930 273 TTS 275 (299)
Q Consensus 273 v~~ 275 (299)
|++
T Consensus 605 V~y 607 (608)
T KOG4212|consen 605 VTY 607 (608)
T ss_pred eee
Confidence 864
No 111
>KOG0110|consensus
Probab=98.51 E-value=3.8e-07 Score=87.65 Aligned_cols=77 Identities=29% Similarity=0.372 Sum_probs=67.8
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCC---CCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKST---GKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 198 ~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~---g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
++||.||+++++.++|...|...|.|..+.|...+.. --+.|||||+|.+.++|+.|++. |+| ..++|+.|.++
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~-lqg--tvldGH~l~lk 593 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKA-LQG--TVLDGHKLELK 593 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHH-hcC--ceecCceEEEE
Confidence 4999999999999999999999999999988765411 22569999999999999999999 999 88889999988
Q ss_pred eec
Q psy3930 275 SRL 277 (299)
Q Consensus 275 ~k~ 277 (299)
+..
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 865
No 112
>KOG4209|consensus
Probab=98.46 E-value=5.6e-07 Score=77.80 Aligned_cols=82 Identities=29% Similarity=0.413 Sum_probs=74.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 192 PDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 192 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
...+...+||+|+...++-++++..|+.||.+..+.++.++.+|.++||+||+|.+.+.++.|+. +|| -.+.++.+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~--l~g--s~i~~~~i 172 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK--LDG--SEIPGPAI 172 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh--cCC--cccccccc
Confidence 35667899999999999999999999999999999999999889999999999999999999999 788 78888888
Q ss_pred EEEeec
Q psy3930 272 TTTSRL 277 (299)
Q Consensus 272 ~v~~k~ 277 (299)
.+..+.
T Consensus 173 ~vt~~r 178 (231)
T KOG4209|consen 173 EVTLKR 178 (231)
T ss_pred eeeeee
Confidence 887654
No 113
>KOG2591|consensus
Probab=98.46 E-value=1.4e-07 Score=88.16 Aligned_cols=76 Identities=30% Similarity=0.509 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhhhcCCCCcchhHHHHHhhhcCCCeeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceee
Q psy3930 108 QLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVR 183 (299)
Q Consensus 108 ~~~~~i~~q~efyfsd~nL~~d~fl~~~~~~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~ 183 (299)
++.+.+++||||||+.+||..|.||..+|..+.+|+|-+++.|..|..++.|.+.+.++|+++.+++++++..+|+
T Consensus 95 ~~kq~lk~qlEy~fSreNlssD~YL~sQMDSDqyVPI~tva~~~~i~klttDvdLI~Evlresp~VqvDekgekVr 170 (684)
T KOG2591|consen 95 DLKQLLKKQLEYYFSRENLSSDRYLISQMDSDQYVPINTVANFPEIMKLTTDVDLIVEVLRESPNVQVDEKGEKVR 170 (684)
T ss_pred hHHHHHHHHHHHhhccccccchhhhhhhcccccccchhhhccchhhhhhccchHHHHHHHhcCCCceeccCccccc
Confidence 5667788999999999999999999999999999999999999999999999999999999999999999988874
No 114
>KOG4661|consensus
Probab=98.46 E-value=3.7e-07 Score=85.63 Aligned_cols=79 Identities=23% Similarity=0.374 Sum_probs=69.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
..++++||++|...+--.+|+.+|++||.|+-..++++.-+--.++||||++.+.++|.+||.. |+. ..+.|+.|.|
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~h-LHr--TELHGrmISV 479 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEH-LHR--TELHGRMISV 479 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHH-hhh--hhhcceeeee
Confidence 3467899999999999999999999999999999988765666789999999999999999999 654 8888999998
Q ss_pred Ee
Q psy3930 274 TS 275 (299)
Q Consensus 274 ~~ 275 (299)
..
T Consensus 480 Ek 481 (940)
T KOG4661|consen 480 EK 481 (940)
T ss_pred ee
Confidence 65
No 115
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.44 E-value=3.9e-07 Score=69.17 Aligned_cols=74 Identities=27% Similarity=0.370 Sum_probs=45.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhc--CCCCCCCCCCceEEE
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELG--LNPCPPDYQSSILTT 273 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~--lng~~~~~~g~~l~v 273 (299)
++.|.+.|++..++.++|++.|+.||+|.+|.+.+.. ..|||+|.+++.|+.|++++ .++..+.+.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 4679999999999999999999999999999997643 25999999999999999872 222356666766665
Q ss_pred Ee
Q psy3930 274 TS 275 (299)
Q Consensus 274 ~~ 275 (299)
++
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 54
No 116
>KOG4206|consensus
Probab=98.42 E-value=1.1e-06 Score=73.88 Aligned_cols=101 Identities=17% Similarity=0.290 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeeccc------------------------------------------------
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ------------------------------------------------ 189 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~------------------------------------------------ 189 (299)
.+.+.|..|+..+++.-+.|+..++.++....
T Consensus 60 k~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~ 139 (221)
T KOG4206|consen 60 KETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFL 139 (221)
T ss_pred cChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCcc
Confidence 34788999999999988888887776543210
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCC
Q psy3930 190 DKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPP 264 (299)
Q Consensus 190 ~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~ 264 (299)
....+....+|+.|||.+++.+.+..+|.+|+....|+++... .+.|||+|.+...|..|.+. ++|.++
T Consensus 140 ~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~-lq~~~i 208 (221)
T KOG4206|consen 140 AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQA-LQGFKI 208 (221)
T ss_pred ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhh-hcccee
Confidence 0113445789999999999999999999999999999988754 46899999999999999998 887433
No 117
>KOG0105|consensus
Probab=98.41 E-value=1.4e-06 Score=70.97 Aligned_cols=114 Identities=18% Similarity=0.187 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccC------------------------CCCCCCcEEEEecCCCCCCHHHH
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD------------------------KPDVDECTIYVEKLPPEAEHDYI 213 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~------------------------~~~~~~~~l~V~nLp~~~t~e~L 213 (299)
++..+|..||..-++..+.+-.++|+.+..-.. ..-.....|.|.+||++.+|++|
T Consensus 53 Ed~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDL 132 (241)
T KOG0105|consen 53 EDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDL 132 (241)
T ss_pred cCccchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHH
Confidence 568889999999999999998888875431100 00122357999999999999999
Q ss_pred HHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeeccc
Q psy3930 214 ESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLSF 279 (299)
Q Consensus 214 ~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~~~ 279 (299)
+....+-|.|.+..+.+| |+|.|+|-..++.+-|+.+ +......-.|...-+.++...
T Consensus 133 KDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~-ld~~~~~seGe~~yirv~~~~ 190 (241)
T KOG0105|consen 133 KDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRK-LDDQKFRSEGETAYIRVRGDE 190 (241)
T ss_pred HHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHh-hccccccCcCcEeeEEecccC
Confidence 999999999999988776 3799999999999999999 554455556776666665443
No 118
>KOG1457|consensus
Probab=98.38 E-value=2.4e-06 Score=71.63 Aligned_cols=95 Identities=22% Similarity=0.157 Sum_probs=70.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccC-CCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCC-CCceE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFK-STGKLKGFAFVEFSTKEEAAKALELGLNPCPPDY-QSSIL 271 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~-~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~-~g~~l 271 (299)
..-+||||.|||.++..-+|..+|..|-.-+.+.+.... ...-.+.+|||.|.+..+|.+|+.+ +||.+.+. .+..|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamna-LNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNA-LNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHH-hcCeeeccccCcee
Confidence 336899999999999999999999998666655554322 1122457999999999999999999 99966655 56777
Q ss_pred EEEeecccCCCCCCCCCC
Q psy3930 272 TTTSRLSFGITPLGFESG 289 (299)
Q Consensus 272 ~v~~k~~~~~~~r~~~~g 289 (299)
.++...+-.+..|+.++|
T Consensus 111 hiElAKSNtK~kr~k~sg 128 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSG 128 (284)
T ss_pred EeeehhcCcccccCCCCC
Confidence 777765554545555544
No 119
>KOG4211|consensus
Probab=98.36 E-value=1.9e-06 Score=79.77 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=93.1
Q ss_pred HhhhhcCCCCcchhHHHHHhhhcCCCeeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeec--------
Q psy3930 116 LMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVV-------- 187 (299)
Q Consensus 116 q~efyfsd~nL~~d~fl~~~~~~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~-------- 187 (299)
.++| |++.++.. -.+.+.++--..+.++.|.. .+++.+|++. +...++.+-+.|-...+
T Consensus 27 i~~F-f~~~~I~~----~~~~r~~Gr~sGeA~Ve~~s-------eedv~~Alkk-dR~~mg~RYIEVf~~~~~e~d~~~~ 93 (510)
T KOG4211|consen 27 ILDF-FSNCGIEN----LEIPRRNGRPSGEAYVEFTS-------EEDVEKALKK-DRESMGHRYIEVFTAGGAEADWVMR 93 (510)
T ss_pred HHHH-HhcCceeE----EEEeccCCCcCcceEEEeec-------hHHHHHHHHh-hHHHhCCceEEEEccCCcccccccc
Confidence 4455 78777654 11223334455567777766 7899999964 33344444444433221
Q ss_pred -ccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEE-EEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCC
Q psy3930 188 -VQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTY-VSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPD 265 (299)
Q Consensus 188 -~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~-v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~ 265 (299)
...........|-+.+||+.||+++|.++|+..-.+.. |-++.+. .|++.|-|||.|++.+.|++|+.. ++..
T Consensus 94 ~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r----hre~ 168 (510)
T KOG4211|consen 94 PGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR----HREN 168 (510)
T ss_pred CCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH----HHHh
Confidence 11111234567899999999999999999998664444 5566665 778889999999999999999987 3355
Q ss_pred CCCceEEE
Q psy3930 266 YQSSILTT 273 (299)
Q Consensus 266 ~~g~~l~v 273 (299)
+..+=|.|
T Consensus 169 iGhRYIEv 176 (510)
T KOG4211|consen 169 IGHRYIEV 176 (510)
T ss_pred hccceEEe
Confidence 55665555
No 120
>KOG4660|consensus
Probab=98.34 E-value=3.8e-07 Score=85.48 Aligned_cols=72 Identities=26% Similarity=0.460 Sum_probs=63.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
+...++|+|-|||..++.++|..+|+.||+|..|+.-+. .+|.+||+|-+.-+|++|+++ +|+ ..+.|..+.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~-l~~--~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKA-LNR--REIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHH-HHH--HHhhhhhhc
Confidence 456789999999999999999999999999999876444 478899999999999999999 898 777777765
No 121
>KOG1548|consensus
Probab=98.32 E-value=2.1e-06 Score=76.29 Aligned_cols=78 Identities=27% Similarity=0.387 Sum_probs=69.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEE--------EEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCC
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTY--------VSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPD 265 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~--------v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~ 265 (299)
..+..|||+|||.++|-+++.++|++||-|.. |.+.++. .|..+|-|.+.|...++..-|++. |++ ..
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~i-lDe--~~ 207 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKI-LDE--DE 207 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHH-hCc--cc
Confidence 44567999999999999999999999997754 7788876 699999999999999999999999 998 78
Q ss_pred CCCceEEEEe
Q psy3930 266 YQSSILTTTS 275 (299)
Q Consensus 266 ~~g~~l~v~~ 275 (299)
+.|+.|+|+.
T Consensus 208 ~rg~~~rVer 217 (382)
T KOG1548|consen 208 LRGKKLRVER 217 (382)
T ss_pred ccCcEEEEeh
Confidence 8899999975
No 122
>KOG4454|consensus
Probab=98.32 E-value=3.7e-07 Score=76.20 Aligned_cols=80 Identities=23% Similarity=0.279 Sum_probs=71.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|+...++++-|.++|-+-|+|..|.|+.++ .+..+ ||||.|.++-+..-|++. +|| ..+.+..+.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L-~ng--~~l~~~e~q~ 81 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQL-ENG--DDLEEDEEQR 81 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhh-ccc--chhccchhhc
Confidence 345899999999999999999999999999999999887 66666 999999999999999998 999 7777888888
Q ss_pred Eeecc
Q psy3930 274 TSRLS 278 (299)
Q Consensus 274 ~~k~~ 278 (299)
++++.
T Consensus 82 ~~r~G 86 (267)
T KOG4454|consen 82 TLRCG 86 (267)
T ss_pred ccccC
Confidence 87754
No 123
>KOG0151|consensus
Probab=98.21 E-value=2.8e-06 Score=81.75 Aligned_cols=81 Identities=21% Similarity=0.423 Sum_probs=65.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccC---CCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCc
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFK---STGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSS 269 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~---~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~ 269 (299)
++...++||+||++.++++.|-..|+.||+|..++|+..+ .....+-||||-|.+..+|++|++. |+| ..+.+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~-lqg--~iv~~~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKE-LQG--IIVMEY 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHH-hcc--eeeeee
Confidence 4556789999999999999999999999999999987644 2344566899999999999999999 998 333333
Q ss_pred eEEEEeecccC
Q psy3930 270 ILTTTSRLSFG 280 (299)
Q Consensus 270 ~l~v~~k~~~~ 280 (299)
+.|..|+
T Consensus 248 ----e~K~gWg 254 (877)
T KOG0151|consen 248 ----EMKLGWG 254 (877)
T ss_pred ----eeeeccc
Confidence 4455554
No 124
>KOG0226|consensus
Probab=98.21 E-value=2.6e-06 Score=72.72 Aligned_cols=79 Identities=25% Similarity=0.390 Sum_probs=71.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
..+...||+|.|.-+++.+-|...|.+|-.....++++++-||+++|||||.|.+.+++..|+.. +|| .-++.++|.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmre-m~g--kyVgsrpik 263 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMRE-MNG--KYVGSRPIK 263 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHh-hcc--cccccchhH
Confidence 45567899999999999999999999999888889999988999999999999999999999999 998 667777776
Q ss_pred EE
Q psy3930 273 TT 274 (299)
Q Consensus 273 v~ 274 (299)
.+
T Consensus 264 lR 265 (290)
T KOG0226|consen 264 LR 265 (290)
T ss_pred hh
Confidence 54
No 125
>KOG0106|consensus
Probab=98.20 E-value=6.3e-07 Score=75.90 Aligned_cols=107 Identities=26% Similarity=0.371 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecc-------c-----------CCCCCCCcEEEEecCCCCCCHHHHHHHhhc
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVV-------Q-----------DKPDVDECTIYVEKLPPEAEHDYIESVFSK 219 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~-------~-----------~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~ 219 (299)
.+..+|..|+..+++.++.+..+.+..+... . .......+.+.|.+++..+.+.+|...|.+
T Consensus 43 ed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~ 122 (216)
T KOG0106|consen 43 EDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRP 122 (216)
T ss_pred CchhhhhcccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcc
Confidence 4577888899889998888776655544321 0 011355678999999999999999999999
Q ss_pred CCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 220 YGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 220 ~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
+|.+.+..+. .+++||+|++.++|..|+.. ++| .++.+++|.+..
T Consensus 123 ~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~-l~~--~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 123 AGEVTYVDAR--------RNFAFVEFSEQEDAKRALEK-LDG--KKLNGRRISVEK 167 (216)
T ss_pred cCCCchhhhh--------ccccceeehhhhhhhhcchh-ccc--hhhcCceeeecc
Confidence 9998555442 45799999999999999999 888 899999999844
No 126
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.14 E-value=2.5e-05 Score=58.07 Aligned_cols=68 Identities=19% Similarity=0.321 Sum_probs=60.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhhc--CCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCC
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSK--YGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPD 265 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~--~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~ 265 (299)
+||.+.|+|-..|.++|.+++.. .|..-.+.+|.|-.++.+.|||||.|.+++.|.+..+. .+|..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~-f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKA-FNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHH-HcCCccc
Confidence 58999999999999999998865 46777888999988899999999999999999999999 8986654
No 127
>KOG0106|consensus
Probab=98.06 E-value=5.1e-06 Score=70.40 Aligned_cols=69 Identities=28% Similarity=0.495 Sum_probs=59.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
..+|||+||+.+.+.+|+.+|..||.+..+.+. .||+||+|.+.-+|..|+.. +|| ..+.+..+.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~-l~~--~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHD-LDG--KELCGERLVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccch-hcC--ceecceeeeeecc
Confidence 468999999999999999999999999988874 35899999999999999999 888 6666666555443
No 128
>KOG4211|consensus
Probab=97.88 E-value=4.7e-05 Score=70.77 Aligned_cols=73 Identities=25% Similarity=0.398 Sum_probs=60.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
...|-+.+||+++|+++|.++|+.++ |..+.+++. +|+..|-|||+|.+++++++|+++ .+..+..+=|.|-.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk----dR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK----DRESMGHRYIEVFT 82 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHh----hHHHhCCceEEEEc
Confidence 45677899999999999999999998 777777765 799999999999999999999997 23555566666643
No 129
>KOG0120|consensus
Probab=97.80 E-value=3.4e-05 Score=73.09 Aligned_cols=114 Identities=22% Similarity=0.279 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCccccccccceeeeeeccc---------------------CCCCCCCcEEEEecCCCCCCHHHHHHHhh
Q psy3930 160 PDDVVKALRKSKLLEVTEDGTKVRRTVVVQ---------------------DKPDVDECTIYVEKLPPEAEHDYIESVFS 218 (299)
Q Consensus 160 ~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~---------------------~~~~~~~~~l~V~nLp~~~t~e~L~~~F~ 218 (299)
.+.|.+|+ .+++....+...++.+..... .......+.+||++||...++.++.++..
T Consensus 233 ~~~at~~~-~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~ 311 (500)
T KOG0120|consen 233 ISEATEAM-ALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLD 311 (500)
T ss_pred CCchhhhh-cccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHH
Confidence 45566665 566666777776665432100 00123456899999999999999999999
Q ss_pred cCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeec
Q psy3930 219 KYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRL 277 (299)
Q Consensus 219 ~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~ 277 (299)
.||++...+++.+..+|.++||||.+|-+......|+.. +|| ..+.+..+.|+..+
T Consensus 312 ~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~ag-LnG--m~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 312 SFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAG-LNG--MQLGDKKLVVQRAI 367 (500)
T ss_pred hcccchhheeecccccccccceeeeeeeCCcchhhhhcc-cch--hhhcCceeEeehhh
Confidence 999999999999998899999999999999999999999 999 88889999887654
No 130
>KOG1190|consensus
Probab=97.71 E-value=0.0017 Score=59.40 Aligned_cols=73 Identities=25% Similarity=0.303 Sum_probs=63.4
Q ss_pred CcEEEEecCCCC-CCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 196 ECTIYVEKLPPE-AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 196 ~~~l~V~nLp~~-~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
++.|.|.||.+. +|.+.|..+|+-||+|.+|.|...+. --|.|.+.+...|+-|+.+ |+| ..+-|++|+|.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~h-L~g--~~l~gk~lrvt 368 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEH-LEG--HKLYGKKLRVT 368 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHH-hhc--ceecCceEEEe
Confidence 467889999765 89999999999999999999998753 2499999999999999999 999 66668999887
Q ss_pred ee
Q psy3930 275 SR 276 (299)
Q Consensus 275 ~k 276 (299)
..
T Consensus 369 ~S 370 (492)
T KOG1190|consen 369 LS 370 (492)
T ss_pred ec
Confidence 64
No 131
>KOG0120|consensus
Probab=97.55 E-value=0.00014 Score=69.02 Aligned_cols=114 Identities=19% Similarity=0.312 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccCCCC---C--CCcEE-------EEecCCCCC-------C---------
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPD---V--DECTI-------YVEKLPPEA-------E--------- 209 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~---~--~~~~l-------~V~nLp~~~-------t--------- 209 (299)
.+......|+..+|+..+.+..+.+.++..-..... . +.... -..+.|..+ +
T Consensus 339 ~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~E 418 (500)
T KOG0120|consen 339 CDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEE 418 (500)
T ss_pred eCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHH
Confidence 345666788889999999999988877643211110 0 00001 111222111 1
Q ss_pred ----HHHHHHHhhcCCceEEEEeeccCCC---CCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 210 ----HDYIESVFSKYGKVTYVSLPKFKST---GKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 210 ----~e~L~~~F~~~G~i~~v~i~~~~~~---g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
-|+++.-+++||.|..|.++++... .-..|-.||+|.+.++++.|.++ |+| ..|.++.+...
T Consensus 419 yeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~-L~G--rKF~nRtVvts 487 (500)
T KOG0120|consen 419 YEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEE-LTG--RKFANRTVVAS 487 (500)
T ss_pred HHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHH-ccC--ceeCCcEEEEE
Confidence 2567778899999999999987212 22345679999999999999999 999 88999987654
No 132
>KOG0147|consensus
Probab=97.55 E-value=3.1e-05 Score=72.79 Aligned_cols=81 Identities=22% Similarity=0.299 Sum_probs=73.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
..+.+++|+-.++...+.-+|.++|+.+|.|..|+++.|+.++.++|.|||+|.+.++...||. |.| .-+.|.++.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia--LsG--qrllg~pv~ 251 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA--LSG--QRLLGVPVI 251 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh--hcC--CcccCceeE
Confidence 4556899999999999999999999999999999999999999999999999999999999995 788 777799988
Q ss_pred EEeec
Q psy3930 273 TTSRL 277 (299)
Q Consensus 273 v~~k~ 277 (299)
|+...
T Consensus 252 vq~sE 256 (549)
T KOG0147|consen 252 VQLSE 256 (549)
T ss_pred ecccH
Confidence 87753
No 133
>KOG1457|consensus
Probab=97.54 E-value=9.6e-05 Score=62.18 Aligned_cols=60 Identities=23% Similarity=0.453 Sum_probs=50.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCC
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNP 261 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng 261 (299)
.|+||.||.+++++++|+.+|+.|.....++|... .| .+.+|++|++.+.|..|+.. ++|
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~-lqg 270 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNH-LQG 270 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHH-hhc
Confidence 47999999999999999999999987776666421 33 45799999999999999998 887
No 134
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.45 E-value=0.00043 Score=45.64 Aligned_cols=52 Identities=21% Similarity=0.565 Sum_probs=41.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHH
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKAL 255 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al 255 (299)
+.|-|.|+|++..+. +...|..||+|..+.+... ..+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 468899999876644 5558889999999998722 237999999999999985
No 135
>KOG1995|consensus
Probab=97.42 E-value=0.00019 Score=64.38 Aligned_cols=80 Identities=23% Similarity=0.277 Sum_probs=69.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEE--------EEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCC
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTY--------VSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPP 264 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~--------v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~ 264 (299)
.....+|||.++|..+++++|.++|.++|.|.. |.+-+++.|+..+|-|-|.|.+...|+.|+.- +++ .
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~-~ag--k 139 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEW-FAG--K 139 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhh-hcc--c
Confidence 345678999999999999999999999997753 66778888999999999999999999999998 888 7
Q ss_pred CCCCceEEEEe
Q psy3930 265 DYQSSILTTTS 275 (299)
Q Consensus 265 ~~~g~~l~v~~ 275 (299)
.+.+..|+|..
T Consensus 140 df~gn~ikvs~ 150 (351)
T KOG1995|consen 140 DFCGNTIKVSL 150 (351)
T ss_pred cccCCCchhhh
Confidence 78887777643
No 136
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.41 E-value=0.001 Score=47.62 Aligned_cols=67 Identities=24% Similarity=0.362 Sum_probs=44.8
Q ss_pred cEEEEecCCCCCCHH----HHHHHhhcCC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 197 CTIYVEKLPPEAEHD----YIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e----~L~~~F~~~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
..|||.|||.+.+.. -|+.++..+| .|..|. .+.|.|.|.+++.|.+|.+. |+| -++-|..|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KR-meg--EdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKR-MEG--EDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHH-HTT----SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHh-hcc--cccccceE
Confidence 368999999988765 4567777887 566552 24699999999999999999 787 67778888
Q ss_pred EEEee
Q psy3930 272 TTTSR 276 (299)
Q Consensus 272 ~v~~k 276 (299)
.|...
T Consensus 70 ~v~~~ 74 (90)
T PF11608_consen 70 SVSFS 74 (90)
T ss_dssp EEESS
T ss_pred EEEEc
Confidence 77654
No 137
>KOG1190|consensus
Probab=97.36 E-value=0.001 Score=60.69 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=79.2
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecc---------cC--------------------CC----CCCCcEEEEecC
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVV---------QD--------------------KP----DVDECTIYVEKL 204 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~---------~~--------------------~~----~~~~~~l~V~nL 204 (299)
.|...|+-|+..+++..+.++.++|...+-. ++ +. -+...++.+.|+
T Consensus 343 sd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsni 422 (492)
T KOG1190|consen 343 SDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNI 422 (492)
T ss_pred cchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccC
Confidence 5788899999999999999998888654310 00 00 145568999999
Q ss_pred CCCCCHHHHHHHhhcCCce-EEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 205 PPEAEHDYIESVFSKYGKV-TYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 205 p~~~t~e~L~~~F~~~G~i-~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
|+++++++|+..|..-|-. ....+ -++.+.++++.+.+.++|..|+-.+.| + ....+..++|..
T Consensus 423 p~svsee~lk~~f~~~g~~vkafkf-----f~kd~kmal~q~~sveeA~~ali~~hn-h-~lgen~hlRvSF 487 (492)
T KOG1190|consen 423 PPSVSEEDLKNLFQEPGGQVKAFKF-----FQKDRKMALPQLESVEEAIQALIDLHN-H-YLGENHHLRVSF 487 (492)
T ss_pred CcccchhHHHHhhhcCCceEEeeee-----cCCCcceeecccCChhHhhhhcccccc-c-cCCCCceEEEEe
Confidence 9999999999999988754 43333 222345899999999999999988333 2 222444666543
No 138
>KOG2314|consensus
Probab=97.33 E-value=0.00037 Score=65.91 Aligned_cols=72 Identities=29% Similarity=0.453 Sum_probs=58.3
Q ss_pred CcEEEEecCCCCC--C----HHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCc
Q psy3930 196 ECTIYVEKLPPEA--E----HDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSS 269 (299)
Q Consensus 196 ~~~l~V~nLp~~~--t----~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~ 269 (299)
...|+|.|+|--- . ..-|..+|+++|++....+|.+. .|.++||.|++|.+..+|+.|++. +||+.+..++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~-l~G~~ldknHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKS-LNGKRLDKNHT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHh-cccceecccce
Confidence 4578899998532 2 34567899999999999999887 455999999999999999999999 99976665443
No 139
>KOG4210|consensus
Probab=97.31 E-value=0.00054 Score=61.31 Aligned_cols=76 Identities=29% Similarity=0.388 Sum_probs=63.6
Q ss_pred CCcEEE-EecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 195 DECTIY-VEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 195 ~~~~l~-V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++| |++++.++++++|+..|..+|.|..++++.+..+|..+|||||+|.....+..++.. +. ..+.++++.+
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~ 258 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND--QT--RSIGGRPLRL 258 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc--cc--CcccCccccc
Confidence 345566 999999999999999999999999999999999999999999999999988888773 22 4455666555
Q ss_pred E
Q psy3930 274 T 274 (299)
Q Consensus 274 ~ 274 (299)
.
T Consensus 259 ~ 259 (285)
T KOG4210|consen 259 E 259 (285)
T ss_pred c
Confidence 3
No 140
>KOG0112|consensus
Probab=97.24 E-value=0.00037 Score=69.20 Aligned_cols=144 Identities=15% Similarity=0.199 Sum_probs=94.8
Q ss_pred HHHHHhhhcCCCeee-eeeecccccccCCC-----------------CHHHHHHHHHhcCccccccccceeeeeecccCC
Q psy3930 130 RFFSQLLQESPEIEV-SVFLKCNKLARLTH-----------------DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDK 191 (299)
Q Consensus 130 ~fl~~~~~~~~~~~l-~~f~~F~~i~~~~~-----------------~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~ 191 (299)
.|+.++-.+.+.-.| -+|..+|.+.++.- +...+-.|.-.+.+..|.....++....+
T Consensus 375 Lf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~---- 450 (975)
T KOG0112|consen 375 LFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP---- 450 (975)
T ss_pred hhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc----
Confidence 455555555555556 56778877776651 11111222222222333333333322211
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 192 PDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 192 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
.......+++++|++++....|...|..||.|..|.+-. |. .|+||.|++...|+.|+.. +.|..++...+.+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----gq--~yayi~yes~~~aq~a~~~-~rgap~G~P~~r~ 523 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----GQ--PYAYIQYESPPAAQAATHD-MRGAPLGGPPRRL 523 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----CC--cceeeecccCccchhhHHH-HhcCcCCCCCccc
Confidence 234457899999999999999999999999999988743 32 3899999999999999999 8887888778887
Q ss_pred EEEeecccCCCCC
Q psy3930 272 TTTSRLSFGITPL 284 (299)
Q Consensus 272 ~v~~k~~~~~~~r 284 (299)
+|-..-..+++|.
T Consensus 524 rvdla~~~~~~Pq 536 (975)
T KOG0112|consen 524 RVDLASPPGATPQ 536 (975)
T ss_pred ccccccCCCCChh
Confidence 7766544444443
No 141
>KOG0129|consensus
Probab=97.19 E-value=0.0011 Score=62.28 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=60.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhh-cCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFS-KYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~-~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
....+|||||+||.-++-++|..+|+ -||.|.++-|-.|..-+.++|-|=|.|.+..+-.+||.+
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 45578999999999999999999999 599999999999976788999999999999999999987
No 142
>KOG1548|consensus
Probab=97.18 E-value=0.0037 Score=56.05 Aligned_cols=109 Identities=18% Similarity=0.258 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCccccccccceeeeeecc--------------------------------cCC----CCCCCcEEEEec
Q psy3930 160 PDDVVKALRKSKLLEVTEDGTKVRRTVVV--------------------------------QDK----PDVDECTIYVEK 203 (299)
Q Consensus 160 ~~~a~~Al~~~~~~~~~~~~~~v~r~~~~--------------------------------~~~----~~~~~~~l~V~n 203 (299)
.+++.-|++.++...+.+..++|.++.-. ++. .....++|.+.|
T Consensus 193 ~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn 272 (382)
T KOG1548|consen 193 RESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKN 272 (382)
T ss_pred ccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeee
Confidence 57778888888998898988888765310 000 023467899988
Q ss_pred CCC----CCC-------HHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 204 LPP----EAE-------HDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 204 Lp~----~~t-------~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
+=. ..+ +++|++-+.+||.|..|.+-- ..+.|.+-|.|.+.++|..||+. |+| ..|.|+.|.
T Consensus 273 ~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~-m~G--R~fdgRql~ 345 (382)
T KOG1548|consen 273 MFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQT-MDG--RWFDGRQLT 345 (382)
T ss_pred cCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHH-hcC--eeecceEEE
Confidence 732 122 467788899999999997753 23467899999999999999999 999 899999998
Q ss_pred EEe
Q psy3930 273 TTS 275 (299)
Q Consensus 273 v~~ 275 (299)
..+
T Consensus 346 A~i 348 (382)
T KOG1548|consen 346 ASI 348 (382)
T ss_pred EEE
Confidence 766
No 143
>KOG2590|consensus
Probab=97.04 E-value=0.00019 Score=67.31 Aligned_cols=160 Identities=18% Similarity=0.189 Sum_probs=111.6
Q ss_pred CCCcCcChHHHHhhccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCcceeeccccccccccccccccc-c
Q psy3930 7 DSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKGNIIRHFLVPISMETEA-S 85 (299)
Q Consensus 7 ~~nl~~d~~l~~~~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~~~vrr~~~~~~~~p~~~~~~~-~ 85 (299)
+.+++.+.|.-.+++..+|.|=.....|.|.+..+.+......+.--+..++.-.+..+.+-+.. ...|.+..... .
T Consensus 204 ~n~~~~~~~~~~~~~n~~~~~~~~ss~~q~~k~~~~~~~~~q~~~G~~~~~~~l~~~~~~~~k~~--~~~~~~~~~~~~~ 281 (448)
T KOG2590|consen 204 PNSVPGQRGQNQHHDNSSQNPHHNSSGFQRVKNMNGNSNHYQYSRGFSNSLPDLGNQNRNRVKNS--SYRPAPQKSQSGE 281 (448)
T ss_pred cCCCCccccccccccccCcCCCCCCCCccchhhcccCccccccCCCcCCccccccCccccccccc--ccccchhhcCCCC
Confidence 46788899999999999999999999999999999998888888876666776666666655431 12232222211 1
Q ss_pred ccccCccccccccCCCCcCchHHHHHHHHHHhhhhcCCCCcchhHHHHHhhhcCCCeeeeeeecccccccCCCCHHHHHH
Q psy3930 86 DNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVK 165 (299)
Q Consensus 86 ~~~~~~~~~~~~~~~k~r~r~~~~~~~i~~q~efyfsd~nL~~d~fl~~~~~~~~~~~l~~f~~F~~i~~~~~~~~~a~~ 165 (299)
+..+-+...-.....- ...-+-+.++++|||+.+||.+|.|++.. +++|++...|.++.+++.|.+.+.+
T Consensus 282 p~~~~~~~~~~s~~pi-----~~~~~~~~~~ie~~FSeE~~~~d~~n~~k-----~~~l~~ia~F~r~ad~s~d~nli~~ 351 (448)
T KOG2590|consen 282 PIQPGDKNQIPSVQPI-----GNVIAFIQEPIEFYFSEENLQRDRFNREK-----FVPLRVIAKFKRVADLSSDINLILA 351 (448)
T ss_pred ccccCccccCCCcccc-----cccccccccccccccchHHHhhhhhhhcc-----cchhhhhhhhhhhhhcccCHHHHHH
Confidence 1111111100000000 11113456799999999999988877655 5669999999999999999999999
Q ss_pred HHHhcCccccccc
Q psy3930 166 ALRKSKLLEVTED 178 (299)
Q Consensus 166 Al~~~~~~~~~~~ 178 (299)
||++.-.+++.+.
T Consensus 352 alr~s~ive~~~d 364 (448)
T KOG2590|consen 352 ALRNSLIVEETGD 364 (448)
T ss_pred HHhhhhhhhccch
Confidence 9998877665544
No 144
>KOG3152|consensus
Probab=97.04 E-value=0.00048 Score=59.19 Aligned_cols=71 Identities=27% Similarity=0.407 Sum_probs=56.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCC--------CCc----ceEEEEEecCHHHHHHHHHhcCCCCC
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKST--------GKL----KGFAFVEFSTKEEAAKALELGLNPCP 263 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~--------g~~----kg~~fV~F~~~~~A~~Al~~~lng~~ 263 (299)
...||+++||+.+...-|+++|+.||.|-.|.+.....+ |.. -.-|+|+|.+...|..+... |||
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~-Lnn-- 150 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAEL-LNN-- 150 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHH-hCC--
Confidence 468999999999999999999999999999988654332 221 22379999999999999998 887
Q ss_pred CCCCCc
Q psy3930 264 PDYQSS 269 (299)
Q Consensus 264 ~~~~g~ 269 (299)
..++|+
T Consensus 151 ~~Iggk 156 (278)
T KOG3152|consen 151 TPIGGK 156 (278)
T ss_pred CccCCC
Confidence 444444
No 145
>KOG0128|consensus
Probab=97.00 E-value=0.00033 Score=69.20 Aligned_cols=133 Identities=18% Similarity=0.201 Sum_probs=89.3
Q ss_pred HHHHHhhhcCCCeee-eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeec--------ccCCCCCCCcEEE
Q psy3930 130 RFFSQLLQESPEIEV-SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVV--------VQDKPDVDECTIY 200 (299)
Q Consensus 130 ~fl~~~~~~~~~~~l-~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~--------~~~~~~~~~~~l~ 200 (299)
.|++++..+....++ ..|..++.+. ..+.++ ..+...+-|..- +....+ ...........++
T Consensus 670 ~fvsnl~~~~~~~dl~~~~~~~~~~e-------~vqi~~-h~n~~~~rG~~Y-~~F~~~~~~~aaV~f~d~~~~gK~~v~ 740 (881)
T KOG0128|consen 670 IFVSNLSPKMSEEDLSERFSPSGTIE-------VVQIVI-HKNEKRFRGKAY-VEFLKPEHAGAAVAFRDSCFFGKISVA 740 (881)
T ss_pred HHHhhcchhhcCchhhhhcCccchhh-------hHHHHH-Hhhcccccccee-eEeecCCchhhhhhhhhhhhhhhhhhh
Confidence 477777766667777 4577777753 333443 222222222211 111111 0111122356799
Q ss_pred EecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 201 VEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 201 V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
|.|.|+..|.++++.++..+|.+..++++..+ .|.++|.++|.|.++.+|.+++.. ..+ ..++...+.+.+
T Consensus 741 i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s-~d~--~~~rE~~~~v~v 811 (881)
T KOG0128|consen 741 ISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVAS-VDV--AGKRENNGEVQV 811 (881)
T ss_pred eeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhccc-chh--hhhhhcCccccc
Confidence 99999999999999999999999999988877 899999999999999999999877 555 444455555544
No 146
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.78 E-value=0.0042 Score=55.45 Aligned_cols=77 Identities=23% Similarity=0.458 Sum_probs=57.7
Q ss_pred CcEEEEecCCCCCCHHH----H--HHHhhcCCceEEEEeeccCCC-CCcce-E-EEEEecCHHHHHHHHHhcCCCCCCCC
Q psy3930 196 ECTIYVEKLPPEAEHDY----I--ESVFSKYGKVTYVSLPKFKST-GKLKG-F-AFVEFSTKEEAAKALELGLNPCPPDY 266 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~----L--~~~F~~~G~i~~v~i~~~~~~-g~~kg-~-~fV~F~~~~~A~~Al~~~lng~~~~~ 266 (299)
..-+||-+||+.+..|+ | .++|++||.|..|.+-+...+ ....+ + .||+|.+.++|.+||.+ .+| .-.
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~-vDg--s~~ 190 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAE-VDG--SLL 190 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHH-hcc--ccc
Confidence 35689999999876665 2 489999999998877553211 11112 2 49999999999999999 888 777
Q ss_pred CCceEEEEe
Q psy3930 267 QSSILTTTS 275 (299)
Q Consensus 267 ~g~~l~v~~ 275 (299)
+|+.|+...
T Consensus 191 DGr~lkatY 199 (480)
T COG5175 191 DGRVLKATY 199 (480)
T ss_pred cCceEeeec
Confidence 899886643
No 147
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.74 E-value=0.0084 Score=44.92 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=46.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEE-eeccC------CCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCC
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVS-LPKFK------STGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQS 268 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~-i~~~~------~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g 268 (299)
.+.|.|-|+|+. .-..+...|++||+|.... +.++. .......+-.|+|.++.+|.+||.. || ..+.|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~--NG--~i~~g 80 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK--NG--TIFSG 80 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT--TT--EEETT
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh--CC--eEEcC
Confidence 467889999988 5567778899999987764 11110 0011234789999999999999995 77 66767
Q ss_pred ceEE
Q psy3930 269 SILT 272 (299)
Q Consensus 269 ~~l~ 272 (299)
..+.
T Consensus 81 ~~mv 84 (100)
T PF05172_consen 81 SLMV 84 (100)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 5544
No 148
>KOG0115|consensus
Probab=96.70 E-value=0.007 Score=52.20 Aligned_cols=101 Identities=21% Similarity=0.175 Sum_probs=74.9
Q ss_pred HHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEe
Q psy3930 166 ALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 245 (299)
Q Consensus 166 Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F 245 (299)
|-..+++....++.++|+.+.. ..|||.||+..++.+.+...|+.||+|....+..|. .|+..+-++|+|
T Consensus 10 ak~eLd~~~~~~~~lr~rfa~~---------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~ 79 (275)
T KOG0115|consen 10 AKRELDGRFPKGRSLRVRFAMH---------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEF 79 (275)
T ss_pred HHHhcCCCCCCCCceEEEeecc---------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhh
Confidence 3335566667777888876542 579999999999999999999999999876555554 677777899999
Q ss_pred cCHHHHHHHHHhcC-CCCCCCCCCceEEEEee
Q psy3930 246 STKEEAAKALELGL-NPCPPDYQSSILTTTSR 276 (299)
Q Consensus 246 ~~~~~A~~Al~~~l-ng~~~~~~g~~l~v~~k 276 (299)
...-.|.+|+.... .|......+++..|.+-
T Consensus 80 ~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 80 AKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred hcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 99999999998732 33234445666555443
No 149
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.45 E-value=0.012 Score=46.84 Aligned_cols=75 Identities=21% Similarity=0.291 Sum_probs=52.2
Q ss_pred CCCCcEEEEecCCC------CCC---HHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCC
Q psy3930 193 DVDECTIYVEKLPP------EAE---HDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCP 263 (299)
Q Consensus 193 ~~~~~~l~V~nLp~------~~t---~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~ 263 (299)
.+...||.|.-..+ ... -.+|-+.|..||.+.=||++-+ .-+|+|.+..+|.+|+. ++|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals--~dg-- 91 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS--LDG-- 91 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH--GCC--
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc--cCC--
Confidence 45567777765551 122 2367788899999988888754 37899999999999999 587
Q ss_pred CCCCCceEEEEeec-cc
Q psy3930 264 PDYQSSILTTTSRL-SF 279 (299)
Q Consensus 264 ~~~~g~~l~v~~k~-~~ 279 (299)
..++|+.+.++.|. .|
T Consensus 92 ~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 92 IQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp SEETTEEEEEEE-----
T ss_pred cEECCEEEEEEeCCccH
Confidence 89999999999985 45
No 150
>KOG1365|consensus
Probab=96.39 E-value=0.008 Score=54.65 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=59.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCC-ceEE--EEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYG-KVTY--VSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G-~i~~--v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
..+|-+.|||.+++.++|-.+|+.|. .|.. |.++.+. .|+..|-|||+|.+.++|..|... ... ...+.+-|.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk-~hk--~~mk~RYiE 355 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQK-CHK--KLMKSRYIE 355 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHH-HHH--hhcccceEE
Confidence 45788999999999999999999987 4544 7777664 899999999999999999999887 322 233566666
Q ss_pred EEe
Q psy3930 273 TTS 275 (299)
Q Consensus 273 v~~ 275 (299)
|-.
T Consensus 356 vfp 358 (508)
T KOG1365|consen 356 VFP 358 (508)
T ss_pred Eee
Confidence 644
No 151
>KOG1456|consensus
Probab=96.30 E-value=0.045 Score=49.79 Aligned_cols=119 Identities=16% Similarity=0.176 Sum_probs=82.7
Q ss_pred eeeecccccccCC-------------CCHHHHHHHHHhcCccccccccceeeeeecc-----------------c-----
Q psy3930 145 SVFLKCNKLARLT-------------HDPDDVVKALRKSKLLEVTEDGTKVRRTVVV-----------------Q----- 189 (299)
Q Consensus 145 ~~f~~F~~i~~~~-------------~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~-----------------~----- 189 (299)
.+|.-||.+..+. -|..+.++|+..+|+..+-+..+.+.-++.. +
T Consensus 307 Nl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~S 386 (494)
T KOG1456|consen 307 NLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGS 386 (494)
T ss_pred hhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccc
Confidence 3456666655544 5688889999999998888877765433210 0
Q ss_pred --------C-----CCCCCCcEEEEecCCCCCCHHHHHHHhhcCC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHH
Q psy3930 190 --------D-----KPDVDECTIYVEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKAL 255 (299)
Q Consensus 190 --------~-----~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al 255 (299)
+ +-....++|..-|.|..+||+.|..+|..-+ ....|++-..+ +-++ .-|.++|++.++|..||
T Consensus 387 kNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k-serS-ssGllEfe~~s~Aveal 464 (494)
T KOG1456|consen 387 KNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK-SERS-SSGLLEFENKSDAVEAL 464 (494)
T ss_pred cccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc-cccc-ccceeeeehHHHHHHHH
Confidence 0 0135678899999999999999999998766 34455554433 2222 24899999999999999
Q ss_pred HhcCCCCCCCC
Q psy3930 256 ELGLNPCPPDY 266 (299)
Q Consensus 256 ~~~lng~~~~~ 266 (299)
.. +|-.....
T Consensus 465 ~~-~NH~pi~~ 474 (494)
T KOG1456|consen 465 MK-LNHYPIEG 474 (494)
T ss_pred HH-hccccccC
Confidence 99 77544433
No 152
>KOG4307|consensus
Probab=96.30 E-value=0.013 Score=57.15 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=62.7
Q ss_pred Cc-EEEEecCCCCCCHHHHHHHhhcCCceE-EEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 196 EC-TIYVEKLPPEAEHDYIESVFSKYGKVT-YVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 196 ~~-~l~V~nLp~~~t~e~L~~~F~~~G~i~-~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
++ .|-+.|+|.+++-+||-++|..|-.+- +|++.++ ..|...|-|-|.|++.++|.+|... +++ ..+..+.+.+
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~d-l~~--~~i~nr~V~l 941 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMD-LDG--QKIRNRVVSL 941 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhc-ccc--CcccceeEEE
Confidence 45 678899999999999999999997543 4555554 4888899999999999999999998 888 7777777766
Q ss_pred Ee
Q psy3930 274 TS 275 (299)
Q Consensus 274 ~~ 275 (299)
.+
T Consensus 942 ~i 943 (944)
T KOG4307|consen 942 RI 943 (944)
T ss_pred Ee
Confidence 53
No 153
>KOG0129|consensus
Probab=96.15 E-value=0.012 Score=55.50 Aligned_cols=64 Identities=25% Similarity=0.420 Sum_probs=49.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccC-CCC--Ccce---EEEEEecCHHHHHHHHHh
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFK-STG--KLKG---FAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~-~~g--~~kg---~~fV~F~~~~~A~~Al~~ 257 (299)
..-.+.||||+||++++++.|...|..||.+ .|..+... ..+ -.+| |+|+-|+++.+.+.-+.+
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 4456889999999999999999999999975 34454211 111 2455 999999999888887776
No 154
>KOG1456|consensus
Probab=96.02 E-value=0.041 Score=50.03 Aligned_cols=75 Identities=25% Similarity=0.299 Sum_probs=63.2
Q ss_pred CCCcEEEEecCCCC-CCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 194 VDECTIYVEKLPPE-AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 194 ~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
..++.+.|-||... +.-+.|..+|-.||.|..|.+++.+ .|.|.|+..+..+.++|+.. ||+ ..+-|..|.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~h-Lnn--~~lfG~kl~ 356 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTH-LNN--IPLFGGKLN 356 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHH-hcc--CccccceEE
Confidence 35688999999876 6788999999999999999999876 45799999999999999999 887 444677777
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
+.+.
T Consensus 357 v~~S 360 (494)
T KOG1456|consen 357 VCVS 360 (494)
T ss_pred Eeec
Confidence 7654
No 155
>KOG4849|consensus
Probab=95.86 E-value=0.0095 Score=53.51 Aligned_cols=62 Identities=15% Similarity=0.284 Sum_probs=53.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCC--ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYG--KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G--~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
...+|||||-+.+|.++|.+.....| .+..+.+-.++.+|+++|||.|...+..+.++.++.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~Mei 143 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEI 143 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHh
Confidence 35799999999999999999988777 566677777777999999999999998888888887
No 156
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=95.80 E-value=0.0062 Score=61.76 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=45.5
Q ss_pred hccCCCEEeeeeecchhhhhccCCHHHHHHHHh-cCcceeeccCcceeecc
Q psy3930 20 LQESPEIEVSVFLKCNKLARLTHDPDDVVKALR-KSKLLEVTEDGTKVKGN 69 (299)
Q Consensus 20 ~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~-~s~~~~v~~~~~~vrr~ 69 (299)
.+.+|||.|.+||+--.|--|..+++.|..|+. .|+.+||+.||.+||=+
T Consensus 473 pDaeGWVYLNLL~NmAQLHiiNVTPdFVRsAV~E~StKfQLSpDGrKIRWR 523 (989)
T PF09421_consen 473 PDAEGWVYLNLLCNMAQLHIINVTPDFVRSAVSEKSTKFQLSPDGRKIRWR 523 (989)
T ss_pred cccccceehHHHHHHHHHHhhccCHHHHHHHHHhcccceeeCCCCCeeeec
Confidence 366799999999999999989999999999997 88999999999999844
No 157
>KOG0128|consensus
Probab=95.72 E-value=0.00071 Score=66.95 Aligned_cols=64 Identities=28% Similarity=0.467 Sum_probs=57.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
.+.+++|++||+..+.+++|...|..+|.+..+++.....+++.+|.||++|..++.|.+|+..
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 3457899999999999999999999999988888776666899999999999999999999986
No 158
>KOG1365|consensus
Probab=95.37 E-value=0.05 Score=49.61 Aligned_cols=60 Identities=27% Similarity=0.274 Sum_probs=48.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcC----CceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKY----GKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~----G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
-.|-+.|||++++..++.++|..- |....|-+++.. +|+..|-|||.|..+++|+.|+.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH
Confidence 456778999999999999999631 244555555543 788888899999999999999987
No 159
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.32 E-value=0.12 Score=35.07 Aligned_cols=53 Identities=25% Similarity=0.233 Sum_probs=43.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcC---CceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKY---GKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~---G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
..|+|.|+. +.+-++|+.+|..| .....|..+-|. -|-|.|.+.+.|.+||.+
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 579999985 58889999999998 124567666664 389999999999999986
No 160
>KOG4454|consensus
Probab=95.28 E-value=0.0059 Score=51.51 Aligned_cols=86 Identities=22% Similarity=0.305 Sum_probs=70.5
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEec----CCCCCCHHHHHHHhhcCCceEEEEeeccCCC
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEK----LPPEAEHDYIESVFSKYGKVTYVSLPKFKST 234 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~n----Lp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~ 234 (299)
++..+.-|++-+|++.+.++++.+ +++.|+ |....+++.+...|+.-|++..+++.++. .
T Consensus 58 ~E~sv~~a~~L~ng~~l~~~e~q~---------------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d 121 (267)
T KOG4454|consen 58 NENSVQLAGQLENGDDLEEDEEQR---------------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-D 121 (267)
T ss_pred cccchhhhhhhcccchhccchhhc---------------ccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-c
Confidence 366778899999999998888765 344454 66778999999999999999999999987 6
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcCCC
Q psy3930 235 GKLKGFAFVEFSTKEEAAKALELGLNP 261 (299)
Q Consensus 235 g~~kg~~fV~F~~~~~A~~Al~~~lng 261 (299)
|+.+.++|+.+....+.-.++.. ..|
T Consensus 122 ~rnrn~~~~~~qr~~~~P~~~~~-y~~ 147 (267)
T KOG4454|consen 122 GRNRNFGFVTYQRLCAVPFALDL-YQG 147 (267)
T ss_pred CCccCccchhhhhhhcCcHHhhh-hcc
Confidence 88899999999887777777776 554
No 161
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.72 E-value=0.17 Score=36.27 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=38.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
+..||+ +|......||.++|+.||.| .|..+.+. -|||.....+.|..|+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~ 61 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNT 61 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHH
Confidence 445555 99999999999999999976 45555443 599999999999999887
No 162
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=94.58 E-value=0.032 Score=48.29 Aligned_cols=89 Identities=19% Similarity=0.233 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeee----cccC------------------CCCCCCcEEEEecCCCCCCHHHHHH
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTV----VVQD------------------KPDVDECTIYVEKLPPEAEHDYIES 215 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~----~~~~------------------~~~~~~~~l~V~nLp~~~t~e~L~~ 215 (299)
.+.+++..|+..+++..+.++.+.|.... +... ........+++++++..++...+..
T Consensus 165 ~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (306)
T COG0724 165 ESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELAD 244 (306)
T ss_pred cCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHH
Confidence 56899999999999999999999888742 1111 1134567899999999999999999
Q ss_pred HhhcCCceEEEEeeccCCCCCcceEEEEEec
Q psy3930 216 VFSKYGKVTYVSLPKFKSTGKLKGFAFVEFS 246 (299)
Q Consensus 216 ~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~ 246 (299)
.|..+|.+....+.............++.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (306)
T COG0724 245 LFKSRGDIVRASLPPSKDGKIPKSRSFVGNE 275 (306)
T ss_pred hccccccceeeeccCCCCCcccccccccchh
Confidence 9999999977777655433333333444333
No 163
>KOG2202|consensus
Probab=94.24 E-value=0.025 Score=48.85 Aligned_cols=62 Identities=24% Similarity=0.342 Sum_probs=48.6
Q ss_pred HHHHHHhh-cCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 211 DYIESVFS-KYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 211 e~L~~~F~-~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
++|...|+ +||+|..+.+-.+. .-...|=+||.|...++|++|++. ||| ..+.|++|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~-lnn--Rw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALED-LNN--RWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHH-HcC--ccccCCcceeeec
Confidence 45555555 89999988665432 334567799999999999999999 888 8999999988764
No 164
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=93.64 E-value=0.012 Score=47.34 Aligned_cols=31 Identities=13% Similarity=0.062 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
.+.++|++|++.+++.++.++.++|..+.+.
T Consensus 84 ~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 84 NDEGAATAAISEMDGKELNGRHIRVNPANDR 114 (144)
T ss_pred CCHHHHHHHHHHcCCCEECCEEEEEEeCCcC
Confidence 4589999999999999999999999876543
No 165
>KOG4676|consensus
Probab=93.47 E-value=0.13 Score=47.05 Aligned_cols=76 Identities=20% Similarity=0.294 Sum_probs=56.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCC---CCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKS---TGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~---~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
..|.|.||.++++.+++..+|+..|.|..+++..+.. -......|||.|.+...+..|--. .| ..+-++.|-|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL-tn---tvfvdraliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL-TN---TVFVDRALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh-cc---ceeeeeeEEE
Confidence 4789999999999999999999999999998765321 122445899999998888777553 55 4555555555
Q ss_pred Eee
Q psy3930 274 TSR 276 (299)
Q Consensus 274 ~~k 276 (299)
.+-
T Consensus 84 ~p~ 86 (479)
T KOG4676|consen 84 RPY 86 (479)
T ss_pred Eec
Confidence 443
No 166
>KOG0112|consensus
Probab=93.03 E-value=0.034 Score=55.77 Aligned_cols=68 Identities=18% Similarity=0.166 Sum_probs=57.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCC
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPC 262 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~ 262 (299)
....++||+||++..+++.+|+..|..+|.+..|+|-+.. -+....||||.|.+...+-.|... +.|.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e-~s~~ 436 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFE-ESGP 436 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchh-hcCC
Confidence 3557899999999999999999999999999999987654 344455899999999999888887 6663
No 167
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.52 E-value=0.25 Score=41.05 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=43.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhc-CCce---EEEEeeccC-CC-CCcceEEEEEecCHHHHHHHHHhcCCCCC
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSK-YGKV---TYVSLPKFK-ST-GKLKGFAFVEFSTKEEAAKALELGLNPCP 263 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~-~G~i---~~v~i~~~~-~~-g~~kg~~fV~F~~~~~A~~Al~~~lng~~ 263 (299)
....|.|++||++.|++++.+.++. +|.- .++.-.... .. -....-|||.|.+.+++...... ++|+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~-~~g~~ 79 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDR-FDGHV 79 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHH-CTTEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHh-cCCcE
Confidence 3568999999999999999997776 6655 344311211 11 11233489999999999999998 88843
No 168
>KOG0111|consensus
Probab=92.28 E-value=0.043 Score=46.40 Aligned_cols=46 Identities=11% Similarity=0.174 Sum_probs=36.6
Q ss_pred eeeecccccccCC------------------CCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 145 SVFLKCNKLARLT------------------HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 145 ~~f~~F~~i~~~~------------------~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
..|..||.|+.+. .-.++|++||.++|.-++.++.++|..+.|..-
T Consensus 29 aAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ki 92 (298)
T KOG0111|consen 29 AAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKI 92 (298)
T ss_pred hccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccc
Confidence 4566677666655 337889999999999999999999998877654
No 169
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=92.20 E-value=0.059 Score=35.40 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=22.9
Q ss_pred CHHHHHHHHHhcCccccccccceeee
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRR 184 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r 184 (299)
+.++|..|++.+++..+.++.++|..
T Consensus 30 ~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 30 SVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp SHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred CHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 48999999999999999998888764
No 170
>KOG2416|consensus
Probab=91.86 E-value=0.16 Score=48.93 Aligned_cols=75 Identities=19% Similarity=0.188 Sum_probs=56.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhc-CCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCC-CCceE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSK-YGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDY-QSSIL 271 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~-~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~-~g~~l 271 (299)
.....|||.||=.-+|.-+|++++++ .|.|....| |+ .+..|||.|.+.++|.+...+ |+|..+-. +.+.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~A-lhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREA-LHNVQWPPSNPKHL 514 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHH-HhccccCCCCCcee
Confidence 45678999999999999999999996 555655533 32 244699999999999999999 77754433 55555
Q ss_pred EEEe
Q psy3930 272 TTTS 275 (299)
Q Consensus 272 ~v~~ 275 (299)
.+..
T Consensus 515 ~adf 518 (718)
T KOG2416|consen 515 IADF 518 (718)
T ss_pred Eeee
Confidence 5543
No 171
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.48 E-value=0.74 Score=36.54 Aligned_cols=72 Identities=24% Similarity=0.262 Sum_probs=50.1
Q ss_pred CCCCcEEEEecCCCCC-CHH---HHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCC
Q psy3930 193 DVDECTIYVEKLPPEA-EHD---YIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQS 268 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~-t~e---~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g 268 (299)
++.-.||.|.=|..++ ..+ .+...++.||+|.+|.. .|+ ..|.|.|.+..+|=.|+.+ +..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-----cGr--qsavVvF~d~~SAC~Av~A-f~s------- 147 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-----CGR--QSAVVVFKDITSACKAVSA-FQS------- 147 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-----cCC--ceEEEEehhhHHHHHHHHh-hcC-------
Confidence 5566788887666664 234 44556678999999976 343 2599999999999999998 552
Q ss_pred ceEEEEeeccc
Q psy3930 269 SILTTTSRLSF 279 (299)
Q Consensus 269 ~~l~v~~k~~~ 279 (299)
+.-..+..|+|
T Consensus 148 ~~pgtm~qCsW 158 (166)
T PF15023_consen 148 RAPGTMFQCSW 158 (166)
T ss_pred CCCCceEEeec
Confidence 22234456666
No 172
>KOG4307|consensus
Probab=91.31 E-value=0.14 Score=50.23 Aligned_cols=81 Identities=20% Similarity=0.117 Sum_probs=62.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEE-EEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTY-VSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~-v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
..+..|||.+||..+++.++-.+|..--.|+. |.|.+.. ++..++-|||.|..++++..|..- . ++...+.+.|+
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~-~--~k~y~G~r~ir 507 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSV-K--TKFYPGHRIIR 507 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhc-c--cccccCceEEE
Confidence 44678999999999999999999998766665 6666554 788888999999998877777654 2 33556678888
Q ss_pred EEeecc
Q psy3930 273 TTSRLS 278 (299)
Q Consensus 273 v~~k~~ 278 (299)
|..-..
T Consensus 508 v~si~~ 513 (944)
T KOG4307|consen 508 VDSIAD 513 (944)
T ss_pred eechhh
Confidence 865433
No 173
>KOG2193|consensus
Probab=91.09 E-value=0.16 Score=46.98 Aligned_cols=75 Identities=23% Similarity=0.288 Sum_probs=55.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
..+|++||.+.++..+|+.+|+..-.-..-.+.. ..||+||...+...|.+|++. ++| ...+.|.++.+...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~-~sg-k~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIET-LSG-KVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHh-hch-hhhhcCceeeccch
Confidence 3589999999999999999997541100101111 246999999999999999999 776 67778888877655
Q ss_pred ccc
Q psy3930 277 LSF 279 (299)
Q Consensus 277 ~~~ 279 (299)
+..
T Consensus 74 v~k 76 (584)
T KOG2193|consen 74 VPK 76 (584)
T ss_pred hhH
Confidence 443
No 174
>KOG1996|consensus
Probab=90.92 E-value=0.7 Score=40.92 Aligned_cols=62 Identities=29% Similarity=0.302 Sum_probs=46.4
Q ss_pred HHHHHHHhhcCCceEEEEeeccCCCCCcc-eEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 210 HDYIESVFSKYGKVTYVSLPKFKSTGKLK-GFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 210 ~e~L~~~F~~~G~i~~v~i~~~~~~g~~k-g~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
++++++-+++||.|..|-|.-...--... ---||+|...++|.+|+-. +|| .-|+|+.+...
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vd-lnG--RyFGGr~v~A~ 362 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVD-LNG--RYFGGRVVSAC 362 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHh-cCC--ceecceeeehe
Confidence 46788899999999988765543211111 1269999999999999998 999 88888887543
No 175
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.87 E-value=3.1 Score=31.67 Aligned_cols=64 Identities=16% Similarity=0.256 Sum_probs=45.4
Q ss_pred cEEEEecCCCC-CCHHHHHHHhhcCC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCC
Q psy3930 197 CTIYVEKLPPE-AEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCP 263 (299)
Q Consensus 197 ~~l~V~nLp~~-~t~e~L~~~F~~~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~ 263 (299)
..+.+=..|+. ++-++|..+.+.+- .|..++++++. ...+-.+.+.|.+..+|...... .||..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~-fNGk~ 78 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEE-FNGKP 78 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHH-hCCCc
Confidence 44444444544 55666765555554 57789999874 22455789999999999999999 99954
No 176
>KOG2278|consensus
Probab=90.05 E-value=0.25 Score=40.26 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=41.4
Q ss_pred HhhccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCc----ceeeccCcceeecc
Q psy3930 18 QLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK----LLEVTEDGTKVKGN 69 (299)
Q Consensus 18 ~~~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~----~~~v~~~~~~vrr~ 69 (299)
=+|+.|||||+..+++.|+.+-.....++|..+++.-. .+..-++..-||.+
T Consensus 27 L~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndKqRF~l~d~~~el~IrAn 82 (207)
T KOG2278|consen 27 LNMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDKQRFSLIDEAGELLIRAN 82 (207)
T ss_pred ccccCCCceEHHHHhccchhcccCCcHHHHHHHHhccccceEEeecCCCcEEEEec
Confidence 35888999999999999999999888999999998554 34444555566654
No 177
>KOG2068|consensus
Probab=88.38 E-value=0.23 Score=44.72 Aligned_cols=71 Identities=21% Similarity=0.375 Sum_probs=51.8
Q ss_pred cEEEEecCCCCCCHH-HHH--HHhhcCCceEEEEeeccCC----CCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCc
Q psy3930 197 CTIYVEKLPPEAEHD-YIE--SVFSKYGKVTYVSLPKFKS----TGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSS 269 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e-~L~--~~F~~~G~i~~v~i~~~~~----~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~ 269 (299)
.-+||-+||.....+ .|+ +.|++||.|..|.+-++.. .|.+ .-++|+|...++|..||.. .+| ....|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~-v~g--~~~dg~ 153 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDD-VDG--FVDDGR 153 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHH-hhh--HHhhhh
Confidence 568899999886544 443 6899999999998877652 2222 2379999999999999998 776 444555
Q ss_pred eE
Q psy3930 270 IL 271 (299)
Q Consensus 270 ~l 271 (299)
.+
T Consensus 154 ~l 155 (327)
T KOG2068|consen 154 AL 155 (327)
T ss_pred hh
Confidence 53
No 178
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=87.81 E-value=0.035 Score=37.81 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHhcCccccccccce
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTK 181 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~ 181 (299)
.+.++|.+|+..+++..+.+..++
T Consensus 47 ~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 47 ESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cCHHHHHHHHHHcCCCEECccCcC
Confidence 458999999999999988887653
No 179
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=87.41 E-value=0.36 Score=40.50 Aligned_cols=52 Identities=13% Similarity=0.278 Sum_probs=34.4
Q ss_pred hhccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCc--ceeec---cCcceeeccc
Q psy3930 19 LLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LLEVT---EDGTKVKGNI 70 (299)
Q Consensus 19 ~~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~--~~~v~---~~~~~vrr~~ 70 (299)
.|+.+|||+|..|+...+++....+.+.|.+.+..++ -.++. +++..||-+-
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~~~~~~~~~IRA~q 82 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELRYEDPGGWRIRANQ 82 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE-----TTEEEESS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEEcccccCceEEECC
Confidence 3788999999999999999887778899999998666 56777 7788998753
No 180
>KOG0130|consensus
Probab=85.35 E-value=0.17 Score=39.71 Aligned_cols=45 Identities=9% Similarity=0.049 Sum_probs=35.8
Q ss_pred hhhcCCCeeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 135 LLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 135 ~~~~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
+-+..+++++-.++.|.+ .+.|++|+..+|+.++-+..+.|.++-
T Consensus 106 LDRRtGy~KGYaLvEYet-------~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 106 LDRRTGYVKGYALVEYET-------LKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred cccccccccceeeeehHh-------HHHHHHHHHhccchhhhCCceeEEEEE
Confidence 345566777766677766 788999999999999999999998764
No 181
>KOG4210|consensus
Probab=84.56 E-value=0.82 Score=41.03 Aligned_cols=63 Identities=22% Similarity=0.176 Sum_probs=55.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
..++.|++++...+.+.+...++..+|......+........++|++++.|...+.+..|+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~ 149 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEE 149 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHh
Confidence 467899999999999999999999999877777666555788899999999999999999986
No 182
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=84.40 E-value=4.4 Score=27.82 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=35.4
Q ss_pred CCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCC
Q psy3930 207 EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNP 261 (299)
Q Consensus 207 ~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng 261 (299)
.++-++++..+..|+ ... +..++ +| -||.|.+..+|+++... .+|
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~--I~~d~-tG-----fYIvF~~~~Ea~rC~~~-~~~ 55 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDR--IRDDR-TG-----FYIVFNDSKEAERCFRA-EDG 55 (66)
T ss_pred CccHHHHHHHHhcCC-cce--EEecC-CE-----EEEEECChHHHHHHHHh-cCC
Confidence 478899999999997 233 33344 33 58999999999999998 787
No 183
>KOG4285|consensus
Probab=83.75 E-value=7 Score=34.98 Aligned_cols=69 Identities=22% Similarity=0.376 Sum_probs=48.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCC-ceEEEE
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQS-SILTTT 274 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g-~~l~v~ 274 (299)
..-|-|-|+|+... .-|...|++||.|....... +| .|-+|+|.+..+|++||.. || .-++| ..|.|+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~---ng---NwMhirYssr~~A~KALsk--ng--~ii~g~vmiGVk 265 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS---NG---NWMHIRYSSRTHAQKALSK--NG--TIIDGDVMIGVK 265 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC---CC---ceEEEEecchhHHHHhhhh--cC--eeeccceEEeee
Confidence 44566778887754 45667899999988776542 33 3789999999999999986 65 44434 445555
Q ss_pred e
Q psy3930 275 S 275 (299)
Q Consensus 275 ~ 275 (299)
.
T Consensus 266 p 266 (350)
T KOG4285|consen 266 P 266 (350)
T ss_pred e
Confidence 5
No 184
>PLN03213 repressor of silencing 3; Provisional
Probab=83.54 E-value=0.17 Score=47.80 Aligned_cols=58 Identities=2% Similarity=-0.024 Sum_probs=37.0
Q ss_pred HHHHHhhhcCCCeee-eee----ecccccccCCCCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 130 RFFSQLLQESPEIEV-SVF----LKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 130 ~fl~~~~~~~~~~~l-~~f----~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
.-|...+..+|.|.- .+. ..|+-|.-...+..++.+||..+|+.+..|+.++|..+.+
T Consensus 25 DDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 25 DDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred HHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 345666666665222 221 1222222222445789999999999999999999998775
No 185
>KOG4574|consensus
Probab=81.18 E-value=1.2 Score=44.83 Aligned_cols=71 Identities=20% Similarity=0.156 Sum_probs=57.7
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 198 ~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
+.++.|.+-..+-..|..+|+.||.|...+..++- ..+.|+|.+.+.|..|+++ ++|.....-|-+.+|..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dA-l~gkevs~~g~Ps~V~~ 370 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDA-LQGKEVSVTGAPSRVSF 370 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhh-hcCCcccccCCceeEEe
Confidence 34455555566778899999999999999987764 2699999999999999999 99987777888876644
No 186
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=80.84 E-value=1.2 Score=37.00 Aligned_cols=50 Identities=10% Similarity=0.187 Sum_probs=37.2
Q ss_pred hhccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCc--ceeeccCcceeeccc
Q psy3930 19 LLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LLEVTEDGTKVKGNI 70 (299)
Q Consensus 19 ~~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~--~~~v~~~~~~vrr~~ 70 (299)
.|+.+|||+|..|+...+.+....+.+.|.+.+..++ -.+++ +.+||-+-
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l~--~~~IRA~q 78 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKGRFEIS--GDRIRARQ 78 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEec--CceEEecc
Confidence 3788999999999987664433347888999998776 45665 56888763
No 187
>KOG2193|consensus
Probab=78.86 E-value=0.16 Score=47.03 Aligned_cols=106 Identities=20% Similarity=0.333 Sum_probs=78.1
Q ss_pred CCHHHHHHHHHhcCc-cccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCC
Q psy3930 158 HDPDDVVKALRKSKL-LEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGK 236 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~-~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~ 236 (299)
.+...+.+|++..++ +++.|....+....+... ..+.+-+.|+|+...|+.|..+...||.+..|..+.....
T Consensus 45 pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq----rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e-- 118 (584)
T KOG2193|consen 45 PDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ----RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE-- 118 (584)
T ss_pred CchhhhhhhHHhhchhhhhcCceeeccchhhHHH----HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--
Confidence 347889999988765 577777777765544332 2456889999999999999999999999998865432111
Q ss_pred cceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 237 LKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 237 ~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
....-|+|...+.+..|+.+ +|| ..+....+.+
T Consensus 119 -tavvnvty~~~~~~~~ai~k-l~g--~Q~en~~~k~ 151 (584)
T KOG2193|consen 119 -TAVVNVTYSAQQQHRQAIHK-LNG--PQLENQHLKV 151 (584)
T ss_pred -HHHHHHHHHHHHHHHHHHHh-hcc--hHhhhhhhhc
Confidence 11234788999999999999 998 6666666655
No 188
>KOG0804|consensus
Probab=78.06 E-value=8.2 Score=36.43 Aligned_cols=65 Identities=8% Similarity=0.128 Sum_probs=53.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCC
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCP 263 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~ 263 (299)
+..|.|-.+|-.++-.||-.+...+- .|..++++||. .+ .+-...|.|.+.++|....+. +||..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~-~p-nrymvLIkFr~q~da~~Fy~e-fNGk~ 139 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG-MP-NRYMVLIKFRDQADADTFYEE-FNGKQ 139 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC-CC-ceEEEEEEeccchhHHHHHHH-cCCCc
Confidence 67889999999999999999988754 68899999964 22 233579999999999999999 99943
No 189
>KOG4660|consensus
Probab=77.27 E-value=3.2 Score=40.00 Aligned_cols=69 Identities=14% Similarity=0.236 Sum_probs=50.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhh-cCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCC
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFS-KYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPD 265 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~-~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~ 265 (299)
.+++-|.|+|-..|...|.+.-. ..|.-..+.++.|-.+....|||||.|-+++++..+.++ .||..+.
T Consensus 388 rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kA-FnGk~W~ 457 (549)
T KOG4660|consen 388 RTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKA-FNGKKWE 457 (549)
T ss_pred hhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHH-HcCCchh
Confidence 34566666666655555554432 256666777887766777899999999999999999999 9986544
No 190
>KOG2253|consensus
Probab=76.36 E-value=2.9 Score=41.18 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=56.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
.+...++||+|+...+..+-++.+...+|-|..+.... |||.+|.....+..|+.. ++. ...+|..+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~-~t~--~~~~~~kl~ 104 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRL-LTE--LNIDDQKLI 104 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHH-hcc--cCCCcchhh
Confidence 56678999999999999999999999999776654322 899999999999999887 544 555555555
Q ss_pred EEe
Q psy3930 273 TTS 275 (299)
Q Consensus 273 v~~ 275 (299)
+.+
T Consensus 105 ~~~ 107 (668)
T KOG2253|consen 105 ENV 107 (668)
T ss_pred ccc
Confidence 544
No 191
>KOG2135|consensus
Probab=73.58 E-value=2.3 Score=40.19 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=55.0
Q ss_pred CCCCcEEEEecCCCCC-CHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 193 DVDECTIYVEKLPPEA-EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~-t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
..+.+.+-+.-.|+.. +.++|...|.+||+|..|.+-.. ---|.|+|.+..+|-.|... . ...++++.|
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s--~--~avlnnr~i 438 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYAS--H--GAVLNNRFI 438 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhcc--c--cceecCcee
Confidence 3455667777677764 78999999999999999887543 12489999999999777664 3 377888888
Q ss_pred EEEe
Q psy3930 272 TTTS 275 (299)
Q Consensus 272 ~v~~ 275 (299)
++..
T Consensus 439 Kl~w 442 (526)
T KOG2135|consen 439 KLFW 442 (526)
T ss_pred EEEE
Confidence 7654
No 192
>smart00361 RRM_1 RNA recognition motif.
Probab=72.86 E-value=4.3 Score=27.83 Aligned_cols=34 Identities=12% Similarity=0.150 Sum_probs=26.9
Q ss_pred eeeeeeecccccccCCCCHHHHHHHHHhcCcccccccccee
Q psy3930 142 IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKV 182 (299)
Q Consensus 142 ~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v 182 (299)
..+-.|+.|.+ .++|.+|++.+++..+.++.+++
T Consensus 36 ~rG~~fV~f~~-------~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 36 KRGNVYITFER-------SEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred CcEEEEEEECC-------HHHHHHHHHHhCCCEECCEEEEe
Confidence 34456777766 89999999999999998877654
No 193
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=72.77 E-value=13 Score=26.82 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=42.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhc-CC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 198 TIYVEKLPPEAEHDYIESVFSK-YG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 198 ~l~V~nLp~~~t~e~L~~~F~~-~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
.-|+--++..++..+++..++. || .|..|+....+ .|.- -|||.+.....|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~~K--KA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KGEK--KAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCcE--EEEEEeCCCCcHHHHHHh
Confidence 3455567889999999999987 78 67788766544 3333 399999998888877554
No 194
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=70.86 E-value=14 Score=26.16 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=41.7
Q ss_pred EEEEecCCCCCCHHHHHHHhhc-CC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 198 TIYVEKLPPEAEHDYIESVFSK-YG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 198 ~l~V~nLp~~~t~e~L~~~F~~-~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
.-|+-.++..++..+++..++. || .|..|+...-+ .+.- -|||.+.....|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~~K--KA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RGEK--KAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCce--EEEEEECCCCcHHHHHHh
Confidence 3566668899999999999987 77 67777765443 3333 399999887777766554
No 195
>KOG0107|consensus
Probab=69.71 E-value=0.99 Score=37.10 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=28.2
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
=.|+.|.. ..+|..|+..+++..+.+..++|+...
T Consensus 49 fAFVEFed-------~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 49 FAFVEFED-------PRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred ceEEeccC-------cccHHHHHhhcCCccccCceEEEEeec
Confidence 34666655 788999999999999999999888655
No 196
>KOG0114|consensus
Probab=69.02 E-value=0.85 Score=34.23 Aligned_cols=43 Identities=19% Similarity=0.046 Sum_probs=32.6
Q ss_pred eeeecccccccCC---------------CCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 145 SVFLKCNKLARLT---------------HDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 145 ~~f~~F~~i~~~~---------------~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
++|-.||+|.++. ++..+|.+|+..+++..+.+..+.|-...+
T Consensus 37 dlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 37 DLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred HHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 4566677766654 678999999999999988888877765443
No 197
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=66.68 E-value=13 Score=31.03 Aligned_cols=58 Identities=24% Similarity=0.206 Sum_probs=40.4
Q ss_pred CHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCC--CCCCCCCCceEEEEe
Q psy3930 209 EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLN--PCPPDYQSSILTTTS 275 (299)
Q Consensus 209 t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~ln--g~~~~~~g~~l~v~~ 275 (299)
..+.|+.+|..|+.+......+.- +=..|.|.+.++|.+|... ++ + ..+.|..+++-.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~-l~~~~--~~~~g~~l~~yf 67 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQL-LHWDG--TSFNGKRLRVYF 67 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHT-ST--T--SEETTEE-EEE-
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHH-hcccc--cccCCCceEEEE
Confidence 458899999999987776655431 2378999999999999998 77 5 677787776643
No 198
>PLN03120 nucleic acid binding protein; Provisional
Probab=63.80 E-value=1.4 Score=38.70 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
.+.+++..|| .+++..+.++.+.|.+...
T Consensus 51 ~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 51 KDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 3488999999 5899999999999988653
No 199
>KOG0132|consensus
Probab=61.32 E-value=1.8 Score=43.33 Aligned_cols=90 Identities=18% Similarity=0.212 Sum_probs=60.7
Q ss_pred hHHHHHhhhcCCCeee-eeeecccccccCC------------CCHHHHHHHHHhcCccccccccceeeeeecccCCCC--
Q psy3930 129 DRFFSQLLQESPEIEV-SVFLKCNKLARLT------------HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPD-- 193 (299)
Q Consensus 129 d~fl~~~~~~~~~~~l-~~f~~F~~i~~~~------------~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~-- 193 (299)
+.||..+.++..+-+| .+|..||.|.++. ....+|.+|+.+++.+.+.++.+++.|+.....+.+
T Consensus 423 TLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~kse~k 502 (894)
T KOG0132|consen 423 TLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKSEYK 502 (894)
T ss_pred eeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcchhhh
Confidence 3467777777777777 7788888888876 457889999999999999999999999876554331
Q ss_pred -CCCcEEEEecCCCCCCHHHHHHHhh
Q psy3930 194 -VDECTIYVEKLPPEAEHDYIESVFS 218 (299)
Q Consensus 194 -~~~~~l~V~nLp~~~t~e~L~~~F~ 218 (299)
.-...+=|.-||++--..+++.++.
T Consensus 503 ~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 503 DYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred hhhhcccCeeEeehHhcCHHHHHhhh
Confidence 1111223444565533333666554
No 200
>KOG4676|consensus
Probab=56.18 E-value=2.6 Score=38.91 Aligned_cols=58 Identities=19% Similarity=0.158 Sum_probs=48.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
.++++|++|+..+...++-+.|..+|+|.+..+. .|....+|-|+|....+...|+..
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~ 208 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRS 208 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHh
Confidence 4789999999999999999999999999887764 333344677999999888888886
No 201
>KOG0125|consensus
Probab=55.96 E-value=2.8 Score=37.86 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=44.3
Q ss_pred HhhhhcCCCCcchhHHHHHhhhcCCC-eeeee-eecccccccCC----CCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 116 LMEFYLSDSNLRKDRFFSQLLQESPE-IEVSV-FLKCNKLARLT----HDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 116 q~efyfsd~nL~~d~fl~~~~~~~~~-~~l~~-f~~F~~i~~~~----~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
..-|-|.|. -|+.++.+++. +++++ |-.-|. |.+. ++.++|.+|-..+++..|.|+.+.|.++.+.
T Consensus 103 NIPFrFRdp------DL~aMF~kfG~VldVEIIfNERGS-KGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 103 NIPFRFRDP------DLRAMFEKFGKVLDVEIIFNERGS-KGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred cCCccccCc------cHHHHHHhhCceeeEEEEeccCCC-CccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 556666655 35667777775 55543 332222 1111 5589999999999999999999999987654
No 202
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=54.74 E-value=56 Score=22.59 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHhhcCC-----ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 206 PEAEHDYIESVFSKYG-----KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 206 ~~~t~e~L~~~F~~~G-----~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
..++..+|-.++...+ .|-.|++..+ |.||+-.. +.|..+++. +++ ..++|+.+.++.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~-l~~--~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEA-LNG--KKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHH-HTT----SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHH-hcC--CCCCCeeEEEEE
Confidence 3577788888887654 3556777533 78998875 478888988 887 788899988875
No 203
>PTZ00315 2'-phosphotransferase; Provisional
Probab=54.66 E-value=10 Score=37.47 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=40.1
Q ss_pred hccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCc--ceeec---cCc-ceeeccc
Q psy3930 20 LQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LLEVT---EDG-TKVKGNI 70 (299)
Q Consensus 20 ~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~--~~~v~---~~~-~~vrr~~ 70 (299)
|+.+|||+|..|+.-.+.+....+.+.|.+.++.++ -.+++ +++ .+||.+=
T Consensus 400 ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK~RF~l~~~~~~~~~~IRA~Q 456 (582)
T PTZ00315 400 ITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDKQRFKLAYGAADGRLYIRANQ 456 (582)
T ss_pred cCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCCCceEEeccCCCCceEEEecc
Confidence 788999999999988877765567899999999776 47776 345 4788763
No 204
>KOG4483|consensus
Probab=53.71 E-value=55 Score=30.64 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=43.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCc-eEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGK-VTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~-i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
-.+.|-|-++|.....++|-..|..||. --.|.++-+. .+|-.|.+...|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3578889999999999999999999873 2334444443 589999999999999874
No 205
>KOG2295|consensus
Probab=51.69 E-value=2.9 Score=40.31 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=51.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCC
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPC 262 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~ 262 (299)
.|++|+.|++++.+..+|..+++.+..+..+.+-.+........+++|+|+-.-....|+.+ +|++
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~a-Ln~i 296 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWA-LNGI 296 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHH-hhhc
Confidence 47899999999999999999999987666665544333334456789999987778888888 7873
No 206
>KOG0122|consensus
Probab=51.38 E-value=5 Score=34.81 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
.+.++|++||..+|+.-+..=-++|+++.|.
T Consensus 239 ~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 239 ESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred ecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 3489999999999998777666788877653
No 207
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=50.26 E-value=29 Score=25.13 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=31.3
Q ss_pred HHHHhhhcCCC----eee-eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 131 FFSQLLQESPE----IEV-SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 131 fl~~~~~~~~~----~~l-~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
-|+.+..++|- +.. ..+..|.+ .+.|..|.+.+++-.+-|+.+.|+...
T Consensus 22 RL~qLsdNCGGkVl~v~~~tAilrF~~-------~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 22 RLRQLSDNCGGKVLSVSGGTAILRFPN-------QEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp HHHHHHHTTT--EEE--TT-EEEEESS-------HHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred HHHHHhhccCCEEEEEeCCEEEEEeCC-------HHHHHHHHHhhcccccccceEEEEEcC
Confidence 45666667764 222 55677766 899999999999999999999887654
No 208
>KOG4207|consensus
Probab=47.24 E-value=6.6 Score=33.27 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=26.3
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeee
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRT 185 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~ 185 (299)
.|+-|-. ..+|+.|+..+++..|.++++.|..+
T Consensus 58 aFVrf~~-------k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 58 AFVRFHD-------KRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred eEEEeee-------cchHHHHHHhhcceeeccceeeehhh
Confidence 4666654 57888899999999999999988644
No 209
>KOG2891|consensus
Probab=45.57 E-value=29 Score=30.78 Aligned_cols=34 Identities=24% Similarity=0.500 Sum_probs=27.2
Q ss_pred cEEEEecCCCC------------CCHHHHHHHhhcCCceEEEEeec
Q psy3930 197 CTIYVEKLPPE------------AEHDYIESVFSKYGKVTYVSLPK 230 (299)
Q Consensus 197 ~~l~V~nLp~~------------~t~e~L~~~F~~~G~i~~v~i~~ 230 (299)
.|||+.++|.. .+++-|...|..||.|..|.||.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 56777777732 36788999999999999998864
No 210
>KOG0126|consensus
Probab=44.87 E-value=2.1 Score=35.49 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=41.9
Q ss_pred HHHHhhhcCCCeee-eeeecccccccCC------------------CCHHHHHHHHHhcCccccccccceeeee
Q psy3930 131 FFSQLLQESPEIEV-SVFLKCNKLARLT------------------HDPDDVVKALRKSKLLEVTEDGTKVRRT 185 (299)
Q Consensus 131 fl~~~~~~~~~~~l-~~f~~F~~i~~~~------------------~~~~~a~~Al~~~~~~~~~~~~~~v~r~ 185 (299)
|+..+.-...+-+| -+|++||.+..+. +|..+..-|+.++|++.|.++.++|...
T Consensus 39 yiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 39 YIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred EECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 55555555556666 8899999986655 5666777889999999999999998753
No 211
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=41.82 E-value=53 Score=22.20 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=15.6
Q ss_pred HHHHHHhhcCCceEEEEee
Q psy3930 211 DYIESVFSKYGKVTYVSLP 229 (299)
Q Consensus 211 e~L~~~F~~~G~i~~v~i~ 229 (299)
.+|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999998766554
No 212
>KOG4410|consensus
Probab=41.43 E-value=30 Score=30.79 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=35.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCce-EEEEeeccCCCCCcceEEEEEecCH
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKV-TYVSLPKFKSTGKLKGFAFVEFSTK 248 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i-~~v~i~~~~~~g~~kg~~fV~F~~~ 248 (299)
..-||++|||.++.-.+|+..+.+-|.+ .++.+. | +.|-||.+|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk-----g-~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK-----G-HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee-----c-CCcceeEecCCc
Confidence 3569999999999999999999887743 344331 2 245699999864
No 213
>PLN03121 nucleic acid binding protein; Provisional
Probab=38.97 E-value=6 Score=34.42 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
.+.+++..|+ .+++..+.+..+.|.+..
T Consensus 52 ~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 52 KDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 3478888888 889999999888887644
No 214
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=38.70 E-value=47 Score=22.85 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=38.3
Q ss_pred HHHHHHhhcCC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 211 DYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 211 e~L~~~F~~~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
++|.+-|...| +|..+.-+..+.++......||+.+...+...++.- ..+.+..+.|+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~I------k~l~~~~V~vE~ 61 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYKI------KTLCGQRVKVER 61 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceeeh------HhhCCeEEEEec
Confidence 57888888888 677877666655666667889998876554444432 334455555543
No 215
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=37.32 E-value=80 Score=22.98 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=21.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHh
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVF 217 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F 217 (299)
....++|-|.|||...++++|++..
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 5667899999999999999998743
No 216
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=33.54 E-value=1.3e+02 Score=24.11 Aligned_cols=55 Identities=22% Similarity=0.211 Sum_probs=37.8
Q ss_pred EEEecCCCCCCHHHHHHHhhc-CC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHH
Q psy3930 199 IYVEKLPPEAEHDYIESVFSK-YG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256 (299)
Q Consensus 199 l~V~nLp~~~t~e~L~~~F~~-~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~ 256 (299)
.|+--++..++..+|+..++. || .|..|+....+ .|.- -|||.+....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p-~g~K--KA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITP-DGLK--KAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcC-CCce--EEEEEECCCCcHHHHHH
Confidence 444457789999999999987 77 67777655433 3433 39999987666554433
No 217
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=32.10 E-value=62 Score=22.38 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=37.9
Q ss_pred HHHHHHhhcCC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 211 DYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 211 e~L~~~F~~~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
++|++-|...| ++..+.-+....++.+...-+|+.....+....+.. ..+.+..+.|+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~Il~i------k~Lg~~~V~VEr 61 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKEILNI------KTLGGQRVTVER 61 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcceEee------hhhCCeeEEEec
Confidence 57888899999 788888777665566666778887754433332221 344566666654
No 218
>KOG0121|consensus
Probab=31.24 E-value=21 Score=28.02 Aligned_cols=28 Identities=18% Similarity=0.162 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHhcCccccccccceeeee
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRT 185 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~ 185 (299)
...++|..|++-.++..+.++.+++.+-
T Consensus 86 y~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 86 YSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred ecchhHHHHHHHhccCcccccceeeecc
Confidence 4578999999999999999999888653
No 219
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=29.56 E-value=82 Score=28.29 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=55.3
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCC-------CCCcceEEEEEecCHHHHHHHHHhc---CCCCCCC
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKS-------TGKLKGFAFVEFSTKEEAAKALELG---LNPCPPD 265 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~-------~g~~kg~~fV~F~~~~~A~~Al~~~---lng~~~~ 265 (299)
.+.|.+.|+..+++-..+-.-|-+||+|++|.+..+.. .-.......+-|-+.+.+-...... ++..+..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999987641 1112345788999888875543221 3333455
Q ss_pred CCCceEEEEe
Q psy3930 266 YQSSILTTTS 275 (299)
Q Consensus 266 ~~g~~l~v~~ 275 (299)
++...|.+..
T Consensus 95 L~S~~L~lsF 104 (309)
T PF10567_consen 95 LKSESLTLSF 104 (309)
T ss_pred cCCcceeEEE
Confidence 5566666644
No 220
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=29.49 E-value=88 Score=23.98 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=24.7
Q ss_pred cEEEEecCCCC---------CCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecC
Q psy3930 197 CTIYVEKLPPE---------AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFST 247 (299)
Q Consensus 197 ~~l~V~nLp~~---------~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~ 247 (299)
.++.|-|+|.. .+-+.|.+.|..|.++. ++...+. . .+.|++.|+|..
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~-~-gh~g~aiv~F~~ 65 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK-Q-GHTGFAIVEFNK 65 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET-T-EEEEEEEEE--S
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC-C-CCcEEEEEEECC
Confidence 35566676543 35578999999998765 4444443 2 457899999986
No 221
>KOG2318|consensus
Probab=28.31 E-value=3.8e+02 Score=26.61 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=56.5
Q ss_pred CCCcEEEEecCCCC-CCHHHHHHHhhcC----CceEEEEeeccC----------CCCC----------------------
Q psy3930 194 VDECTIYVEKLPPE-AEHDYIESVFSKY----GKVTYVSLPKFK----------STGK---------------------- 236 (299)
Q Consensus 194 ~~~~~l~V~nLp~~-~t~e~L~~~F~~~----G~i~~v~i~~~~----------~~g~---------------------- 236 (299)
...+.|-|-|+.++ +.-.+|..+|..| |.|.+|.|.... ..|-
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34577999999987 6888999888765 478888764321 0111
Q ss_pred ---------------cceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 237 ---------------LKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 237 ---------------~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
.--||.|+|.+.+.|.+..+. .+|.-+.-.+..+-++
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~-CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEE-CDGIEFESSANKLDLR 303 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHh-cCcceeccccceeeee
Confidence 123799999999999999999 9994444445554443
No 222
>KOG0415|consensus
Probab=27.67 E-value=16 Score=33.54 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=41.0
Q ss_pred HHHHhhhcCCCeee-eeeecccccccCC------------------CCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 131 FFSQLLQESPEIEV-SVFLKCNKLARLT------------------HDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 131 fl~~~~~~~~~~~l-~~f~~F~~i~~~~------------------~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
|+-.+-.-....+| -+|+.||+|.+|. .+.++..+|.=.|..+-|.++.+.|..+.
T Consensus 243 FVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 243 FVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred EEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 34433333344677 4599999988876 56788899999999999999988876544
No 223
>KOG0113|consensus
Probab=25.83 E-value=20 Score=32.10 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=44.7
Q ss_pred cCCCCcchhHHHHHhhh----cCCCeee-eeeecccccccCC------------------CCHHHHHHHHHhcCcccccc
Q psy3930 121 LSDSNLRKDRFFSQLLQ----ESPEIEV-SVFLKCNKLARLT------------------HDPDDVVKALRKSKLLEVTE 177 (299)
Q Consensus 121 fsd~nL~~d~fl~~~~~----~~~~~~l-~~f~~F~~i~~~~------------------~~~~~a~~Al~~~~~~~~~~ 177 (299)
-.|.|..-|-|.--++. ...+.+| ..|..||.|+.+. ++..+...|.+...++.|++
T Consensus 91 ~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 91 NNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred CCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC
Confidence 35555555544444433 3345777 7788888888766 56788889999999999999
Q ss_pred ccceee
Q psy3930 178 DGTKVR 183 (299)
Q Consensus 178 ~~~~v~ 183 (299)
+.+-|.
T Consensus 171 rri~VD 176 (335)
T KOG0113|consen 171 RRILVD 176 (335)
T ss_pred cEEEEE
Confidence 988764
No 224
>KOG0108|consensus
Probab=25.03 E-value=70 Score=30.57 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=34.5
Q ss_pred CCCeeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 139 SPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 139 ~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
.+..++-.|+.|.. .+++..|++.+|+.++.++.++|.++..
T Consensus 56 tG~~~G~~f~~~~~-------~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 56 TGKPKGFGFCEFTD-------EETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred CCCcCceeeEecCc-------hhhHHHHHHhcCCcccCCceEEeecccc
Confidence 34466667888877 7899999999999999999999987653
No 225
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=24.93 E-value=90 Score=25.02 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=25.4
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
..+++|.. .+.|-+|+ +++++++.+..++++.+.|
T Consensus 72 ~mwVTF~d-------g~sALaal-s~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 72 TMWVTFRD-------GQSALAAL-SLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp CEEEEESS-------CHHHHHHH-HGCCSEETTEEEEEEE---
T ss_pred eEEEEECc-------cHHHHHHH-ccCCcEECCEEEEEEeCCc
Confidence 34556655 67888888 8899999999999886653
No 226
>PF10736 DUF2527: Protein of unknown function (DUF2627) ; InterPro: IPR019672 This entry represents small proteins with unknown function and appear to be restricted to a family of Enterobacterial proteins. It has a highly conserved sequence. Some proteins are annotated as YobF and may be involved in stress responses in E. coli.
Probab=23.70 E-value=36 Score=20.02 Aligned_cols=10 Identities=20% Similarity=0.388 Sum_probs=7.0
Q ss_pred CeeecCCCCc
Q psy3930 1 MEFYLSDSNL 10 (299)
Q Consensus 1 ~e~yfs~~nl 10 (299)
||||||-+-+
T Consensus 16 Vey~FsAdpy 25 (38)
T PF10736_consen 16 VEYHFSADPY 25 (38)
T ss_pred EEEEEecCce
Confidence 6899986543
No 227
>TIGR02697 WPE_wolbac Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode.
Probab=21.76 E-value=78 Score=18.70 Aligned_cols=28 Identities=25% Similarity=0.070 Sum_probs=20.8
Q ss_pred ecCCCCcCcChHHHHhhccCCCEEeeeee
Q psy3930 4 YLSDSNLRKDRFFSQLLQESPEIEVSVFL 32 (299)
Q Consensus 4 yfs~~nl~~d~~l~~~~~~~~~v~~~~~~ 32 (299)
|.-++||.-..+.++ |-+..|||++-..
T Consensus 7 hwDp~~li~n~~~~~-l~nk~WIPVSat~ 34 (36)
T TIGR02697 7 HWDPENLIANERIRQ-LYNKNWIPVSATG 34 (36)
T ss_pred ccCcchhhhhHHHHH-HhccCceeeeeee
Confidence 667888988888555 4457899998653
No 228
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=20.09 E-value=1.5e+02 Score=18.73 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCc
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGK 222 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~ 222 (299)
..+++.+..+..+.+.|.++...+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 57888888778899999999999985
Done!