Query psy3930
Match_columns 299
No_of_seqs 335 out of 2920
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 21:00:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2voo_A Lupus LA protein; RNA-b 100.0 4.8E-36 1.6E-40 252.9 15.5 167 1-281 20-189 (193)
2 2cqk_A C-MPL binding protein; 100.0 1.7E-30 5.8E-35 192.2 1.2 70 1-70 22-91 (101)
3 1s29_A LA protein; winged heli 100.0 3.7E-30 1.3E-34 188.1 2.1 70 1-70 18-89 (92)
4 3md3_A Nuclear and cytoplasmic 99.8 1.1E-20 3.7E-25 153.7 7.5 114 159-275 50-163 (166)
5 1b7f_A Protein (SXL-lethal pro 99.8 9E-20 3.1E-24 148.8 8.6 114 159-275 54-167 (168)
6 2qfj_A FBP-interacting repress 99.8 1.1E-19 3.7E-24 154.4 8.6 140 130-279 43-205 (216)
7 1l3k_A Heterogeneous nuclear r 99.8 1.3E-19 4.4E-24 151.6 8.3 116 159-279 64-183 (196)
8 4f02_A Polyadenylate-binding p 99.8 3.9E-20 1.3E-24 157.7 4.1 114 158-276 65-178 (213)
9 1fxl_A Paraneoplastic encephal 99.8 3.7E-18 1.3E-22 138.7 14.7 114 146-271 47-160 (167)
10 4fxv_A ELAV-like protein 1; RN 99.8 1E-18 3.4E-23 131.0 9.7 80 193-275 16-95 (99)
11 2g4b_A Splicing factor U2AF 65 99.8 2.7E-19 9.4E-24 146.5 5.3 117 146-275 54-170 (172)
12 2dnz_A Probable RNA-binding pr 99.8 1.3E-17 4.5E-22 123.5 12.4 83 194-279 3-85 (95)
13 1x5t_A Splicing factor 3B subu 99.7 6.2E-18 2.1E-22 125.6 9.9 87 194-283 3-90 (96)
14 2lxi_A RNA-binding protein 10; 99.7 1.8E-18 6E-23 127.6 6.8 77 197-275 2-79 (91)
15 1whw_A Hypothetical protein ri 99.7 2E-17 6.8E-22 123.6 12.5 85 193-280 5-89 (99)
16 2kn4_A Immunoglobulin G-bindin 99.7 1.7E-17 5.8E-22 134.6 12.7 128 142-279 12-150 (158)
17 2cjk_A Nuclear polyadenylated 99.7 6E-19 2E-23 143.8 3.7 111 158-276 53-163 (167)
18 2dnm_A SRP46 splicing factor; 99.7 1.3E-17 4.3E-22 125.6 10.4 86 193-281 10-95 (103)
19 1x5s_A Cold-inducible RNA-bind 99.7 1.5E-17 5E-22 125.0 10.7 90 193-285 9-98 (102)
20 3s8s_A Histone-lysine N-methyl 99.7 1.1E-17 3.9E-22 127.7 10.0 80 194-276 4-83 (110)
21 3nmr_A Cugbp ELAV-like family 99.7 1.2E-16 4.2E-21 130.8 16.8 114 159-275 56-173 (175)
22 2cph_A RNA binding motif prote 99.7 3E-17 1E-21 124.3 12.0 90 193-285 12-103 (107)
23 2cpf_A RNA binding motif prote 99.7 1.5E-17 5.1E-22 124.0 10.1 92 194-288 3-97 (98)
24 1x5u_A Splicing factor 3B subu 99.7 3.9E-17 1.4E-21 123.3 12.5 84 193-279 12-95 (105)
25 2dgp_A Bruno-like 4, RNA bindi 99.7 2.2E-17 7.6E-22 124.9 11.0 85 192-279 9-96 (106)
26 2cpz_A CUG triplet repeat RNA- 99.7 2.4E-17 8.3E-22 126.6 10.5 89 193-284 22-110 (115)
27 2cq0_A Eukaryotic translation 99.7 3.7E-17 1.3E-21 123.1 11.1 83 193-278 12-94 (103)
28 2yh0_A Splicing factor U2AF 65 99.7 3E-17 1E-21 137.4 11.6 120 146-276 54-191 (198)
29 1x4h_A RNA-binding protein 28; 99.7 4.9E-17 1.7E-21 124.0 11.6 86 193-281 12-103 (111)
30 2div_A TRNA selenocysteine ass 99.7 2.1E-17 7.2E-22 123.4 9.2 88 194-284 7-95 (99)
31 2d9p_A Polyadenylate-binding p 99.7 5.6E-17 1.9E-21 122.1 11.6 87 193-284 12-98 (103)
32 2cpe_A RNA-binding protein EWS 99.7 2.8E-17 9.6E-22 125.8 10.0 85 192-279 11-103 (113)
33 2dgs_A DAZ-associated protein 99.7 7.3E-17 2.5E-21 120.5 12.0 83 193-279 7-89 (99)
34 1u6f_A Tcubp1, RNA-binding pro 99.7 6.3E-17 2.2E-21 128.5 12.2 86 193-281 39-124 (139)
35 2dng_A Eukaryotic translation 99.7 6.2E-17 2.1E-21 121.9 11.5 83 193-280 12-94 (103)
36 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.1E-17 7.2E-22 124.1 8.8 84 193-279 9-92 (102)
37 3tyt_A Heterogeneous nuclear r 99.7 2.5E-18 8.5E-23 145.8 4.1 126 130-265 20-191 (205)
38 1s79_A Lupus LA protein; RRM, 99.7 2.9E-17 1E-21 123.9 9.4 82 193-279 8-89 (103)
39 2dgo_A Cytotoxic granule-assoc 99.7 1.4E-16 4.8E-21 122.3 13.4 84 193-279 12-95 (115)
40 3p5t_L Cleavage and polyadenyl 99.7 1E-17 3.6E-22 123.1 6.6 80 197-279 2-83 (90)
41 1wi8_A EIF-4B, eukaryotic tran 99.7 6.1E-17 2.1E-21 122.1 11.0 84 193-281 12-96 (104)
42 3ex7_B RNA-binding protein 8A; 99.7 5.4E-17 1.9E-21 126.7 10.8 85 193-280 19-103 (126)
43 2lkz_A RNA-binding protein 5; 99.7 1.4E-17 4.6E-22 123.8 6.6 82 194-276 7-92 (95)
44 2dnh_A Bruno-like 5, RNA bindi 99.7 1.6E-16 5.5E-21 119.9 12.4 83 193-279 12-97 (105)
45 3smz_A Protein raver-1, ribonu 99.7 1.3E-17 4.5E-22 147.8 7.4 120 146-276 140-261 (284)
46 2fy1_A RNA-binding motif prote 99.7 1.5E-16 5E-21 122.6 12.2 82 194-279 5-86 (116)
47 2dhg_A TRNA selenocysteine ass 99.7 1.3E-16 4.6E-21 120.1 11.8 81 193-277 6-88 (104)
48 3ns6_A Eukaryotic translation 99.7 2.4E-17 8.1E-22 123.7 7.3 79 195-276 5-90 (100)
49 2i2y_A Fusion protein consists 99.7 3.9E-17 1.3E-21 131.5 8.9 108 159-275 22-144 (150)
50 3md1_A Nuclear and cytoplasmic 99.7 1E-16 3.5E-21 115.6 10.0 77 197-276 2-78 (83)
51 1p27_B RNA-binding protein 8A; 99.7 1.3E-16 4.4E-21 120.6 11.1 83 193-278 20-102 (106)
52 3mdf_A Peptidyl-prolyl CIS-tra 99.7 6.2E-17 2.1E-21 117.3 8.8 79 194-275 5-83 (85)
53 2lcw_A RNA-binding protein FUS 99.5 1.5E-18 5E-23 133.8 0.0 99 193-294 4-110 (116)
54 2ghp_A U4/U6 snRNA-associated 99.7 1.2E-17 4.3E-22 148.5 5.9 120 146-276 162-288 (292)
55 3bs9_A Nucleolysin TIA-1 isofo 99.7 9.6E-17 3.3E-21 116.8 9.6 80 194-276 4-83 (87)
56 1fje_B Nucleolin RBD12, protei 99.7 8.8E-17 3E-21 132.1 10.5 115 145-275 56-170 (175)
57 3smz_A Protein raver-1, ribonu 99.7 6.3E-17 2.1E-21 143.4 10.0 111 158-279 65-175 (284)
58 3sde_A Paraspeckle component 1 99.7 1.9E-17 6.6E-22 145.4 6.6 109 159-277 67-177 (261)
59 2la6_A RNA-binding protein FUS 99.7 1.5E-16 5.3E-21 118.8 10.4 80 193-275 10-97 (99)
60 1x4a_A Splicing factor, argini 99.7 1.9E-16 6.5E-21 120.4 10.9 85 193-283 19-103 (109)
61 2lea_A Serine/arginine-rich sp 99.7 6.4E-17 2.2E-21 128.0 8.6 114 159-278 13-126 (135)
62 2do4_A Squamous cell carcinoma 99.7 2.6E-16 8.7E-21 117.8 11.3 80 193-276 14-93 (100)
63 4f25_A Polyadenylate-binding p 99.7 1.1E-16 3.6E-21 123.2 9.2 77 196-277 5-81 (115)
64 2dh8_A DAZ-associated protein 99.7 7.6E-17 2.6E-21 121.8 8.1 83 193-279 13-95 (105)
65 1oo0_B CG8781-PA, drosophila Y 99.7 1.8E-16 6.1E-21 120.7 10.1 83 193-278 23-105 (110)
66 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.3E-16 4.4E-21 130.6 10.0 84 193-279 69-152 (165)
67 2x1f_A MRNA 3'-END-processing 99.7 1.8E-16 6.2E-21 117.7 9.9 78 196-276 2-79 (96)
68 2cq3_A RNA-binding protein 9; 99.7 4.8E-16 1.7E-20 116.9 12.1 84 193-281 12-95 (103)
69 2cqg_A TDP-43, TAR DNA-binding 99.7 4.4E-16 1.5E-20 117.1 11.7 87 193-284 12-98 (103)
70 1wez_A HnRNP H', FTP-3, hetero 99.7 2.7E-16 9.3E-21 118.3 10.5 79 193-277 12-90 (102)
71 1s29_A LA protein; winged heli 99.7 9.9E-18 3.4E-22 122.2 2.4 82 107-188 8-91 (92)
72 2jrs_A RNA-binding protein 39; 99.7 2.6E-16 8.9E-21 119.7 10.4 81 193-276 23-103 (108)
73 2cqd_A RNA-binding region cont 99.7 4.7E-16 1.6E-20 119.6 12.0 84 192-279 13-96 (116)
74 3pgw_A U1-A; protein-RNA compl 99.7 1.1E-16 3.8E-21 141.7 9.6 73 195-275 206-279 (282)
75 1x4d_A Matrin 3; structural ge 99.7 8.8E-17 3E-21 120.8 7.6 82 194-282 13-95 (102)
76 2e5h_A Zinc finger CCHC-type a 99.7 2.3E-16 7.9E-21 116.5 9.8 80 193-275 13-92 (94)
77 2dgv_A HnRNP M, heterogeneous 99.7 3.3E-16 1.1E-20 115.2 10.5 79 193-276 5-83 (92)
78 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.9E-16 1.3E-20 117.4 11.1 84 193-281 12-95 (103)
79 1x4b_A Heterogeneous nuclear r 99.7 2.1E-16 7E-21 121.6 9.7 84 194-281 25-108 (116)
80 3s7r_A Heterogeneous nuclear r 99.7 3.1E-16 1.1E-20 114.2 10.0 79 193-275 8-86 (87)
81 2cqc_A Arginine/serine-rich sp 99.7 2.3E-16 8E-21 116.7 9.4 80 193-275 12-91 (95)
82 1h2v_Z 20 kDa nuclear CAP bind 99.7 4.6E-16 1.6E-20 126.0 12.0 84 193-279 36-119 (156)
83 3n9u_C Cleavage and polyadenyl 99.7 3.2E-16 1.1E-20 127.0 10.1 79 195-276 54-134 (156)
84 1sjq_A Polypyrimidine tract-bi 99.7 2E-16 6.7E-21 119.2 8.1 77 193-276 13-89 (105)
85 2krb_A Eukaryotic translation 99.7 1.8E-16 6.2E-21 114.0 7.6 73 196-273 1-80 (81)
86 2rs2_A Musashi-1, RNA-binding 99.7 4.1E-16 1.4E-20 118.7 9.8 82 193-278 22-103 (109)
87 4a8x_A RNA-binding protein wit 99.7 3E-16 1E-20 114.3 8.6 79 195-276 3-82 (88)
88 2cpi_A CCR4-NOT transcription 99.7 2.7E-16 9.3E-21 120.1 8.5 82 193-277 12-99 (111)
89 3ucg_A Polyadenylate-binding p 99.7 3.8E-16 1.3E-20 114.1 8.9 78 195-276 5-82 (89)
90 2khc_A Testis-specific RNP-typ 99.7 3.3E-16 1.1E-20 120.8 9.0 80 193-275 37-116 (118)
91 2dnq_A RNA-binding protein 4B; 99.7 9.3E-16 3.2E-20 112.5 11.0 81 193-284 5-85 (90)
92 2cqk_A C-MPL binding protein; 99.7 2.7E-17 9.3E-22 121.5 2.6 84 106-189 11-94 (101)
93 2fc9_A NCL protein; structure 99.7 7.4E-16 2.5E-20 115.4 10.5 82 193-281 12-93 (101)
94 3ulh_A THO complex subunit 4; 99.6 6.5E-16 2.2E-20 116.9 10.1 80 193-276 26-105 (107)
95 2do0_A HnRNP M, heterogeneous 99.6 1.7E-15 5.6E-20 116.0 12.3 81 193-277 12-92 (114)
96 2ywk_A Putative RNA-binding pr 99.6 5.1E-16 1.8E-20 114.9 8.9 79 193-275 13-91 (95)
97 2jwn_A Embryonic polyadenylate 99.6 7.9E-16 2.7E-20 119.7 10.4 80 194-277 34-113 (124)
98 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.7E-16 9.3E-21 111.7 7.1 75 197-275 1-75 (77)
99 1x4e_A RNA binding motif, sing 99.6 9.7E-17 3.3E-21 116.4 4.8 75 194-271 3-77 (85)
100 2mss_A Protein (musashi1); RNA 99.6 3.8E-16 1.3E-20 110.5 7.7 74 198-275 1-74 (75)
101 2kxn_B Transformer-2 protein h 99.6 6.2E-16 2.1E-20 121.4 9.7 81 193-276 43-123 (129)
102 2dgx_A KIAA0430 protein; RRM d 99.6 6.3E-16 2.1E-20 114.9 9.2 77 194-276 7-87 (96)
103 2cq1_A PTB-like protein L; RRM 99.6 7.6E-16 2.6E-20 115.6 9.7 80 193-279 12-91 (101)
104 1p1t_A Cleavage stimulation fa 99.6 5.2E-16 1.8E-20 116.8 8.8 80 195-277 7-86 (104)
105 1qm9_A Polypyrimidine tract-bi 99.6 1.5E-16 5.2E-21 133.4 6.3 131 130-275 19-193 (198)
106 1wg5_A Heterogeneous nuclear r 99.6 2.1E-15 7.1E-20 113.8 11.9 80 193-277 12-92 (104)
107 2dis_A Unnamed protein product 99.6 1.3E-15 4.5E-20 115.6 10.8 85 194-279 6-92 (109)
108 2m2b_A RNA-binding protein 10; 99.6 2.6E-16 8.8E-21 123.8 6.9 83 193-277 20-106 (131)
109 2ki2_A SS-DNA binding protein 99.6 1.8E-16 6.3E-21 116.2 5.6 78 197-278 2-79 (90)
110 2nlw_A Eukaryotic translation 99.6 7.6E-16 2.6E-20 116.4 9.1 81 193-278 12-99 (105)
111 2cpx_A Hypothetical protein FL 99.6 2.8E-16 9.6E-21 120.6 6.7 89 193-284 22-110 (115)
112 2adc_A Polypyrimidine tract-bi 99.6 2.9E-16 1E-20 135.1 7.5 115 146-275 75-224 (229)
113 2cq4_A RNA binding motif prote 99.6 1.6E-16 5.4E-21 121.8 5.1 81 194-278 23-103 (114)
114 2fc8_A NCL protein; structure 99.6 1.4E-15 4.8E-20 114.1 10.1 81 193-279 12-92 (102)
115 2cqp_A RNA-binding protein 12; 99.6 4.4E-16 1.5E-20 116.0 7.3 81 193-276 12-92 (98)
116 1x4f_A Matrin 3; structural ge 99.6 6.1E-16 2.1E-20 118.0 8.1 80 193-279 22-102 (112)
117 1x5o_A RNA binding motif, sing 99.6 8.2E-16 2.8E-20 117.8 8.9 70 193-266 22-91 (114)
118 2ghp_A U4/U6 snRNA-associated 99.6 1.5E-16 5.1E-21 141.5 5.3 127 130-277 56-195 (292)
119 2j76_E EIF-4B, EIF4B, eukaryot 99.6 5.9E-16 2E-20 115.9 7.5 79 193-276 16-95 (100)
120 2ek1_A RNA-binding protein 12; 99.6 3.1E-16 1.1E-20 116.1 5.9 79 195-276 14-92 (95)
121 2ad9_A Polypyrimidine tract-bi 99.6 1.1E-15 3.8E-20 117.8 9.1 80 193-279 28-107 (119)
122 3r27_A HnRNP L, heterogeneous 99.6 9E-16 3.1E-20 114.4 8.0 77 193-276 18-94 (100)
123 2kt5_A RNA and export factor-b 99.6 2.2E-15 7.5E-20 117.2 10.2 83 193-279 32-114 (124)
124 1wex_A Hypothetical protein (r 99.6 3E-15 1E-19 113.0 10.5 79 193-278 12-90 (104)
125 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.8E-15 6.3E-20 119.9 9.5 80 193-275 60-139 (140)
126 2dgt_A RNA-binding protein 30; 99.6 3.6E-15 1.2E-19 109.7 10.3 78 193-281 7-84 (92)
127 1x4g_A Nucleolysin TIAR; struc 99.6 2.5E-15 8.7E-20 114.2 9.7 78 193-279 22-99 (109)
128 2cpj_A Non-POU domain-containi 99.6 3.4E-15 1.2E-19 111.4 10.1 78 193-279 12-89 (99)
129 1x4c_A Splicing factor, argini 99.6 5.7E-15 2E-19 112.1 11.4 76 194-279 13-93 (108)
130 2wbr_A GW182, gawky, LD47780P; 99.6 1.4E-15 4.8E-20 109.8 7.2 72 196-276 7-78 (89)
131 2jvr_A Nucleolar protein 3; RN 99.6 1.5E-15 5.1E-20 115.9 7.7 77 194-277 26-103 (111)
132 1iqt_A AUF1, heterogeneous nuc 99.6 6.4E-16 2.2E-20 109.2 5.1 74 198-275 1-74 (75)
133 2kvi_A Nuclear polyadenylated 99.6 2.3E-15 7.9E-20 111.8 8.4 82 193-285 7-89 (96)
134 2hvz_A Splicing factor, argini 99.6 2.2E-15 7.5E-20 112.8 8.3 75 197-279 1-75 (101)
135 2err_A Ataxin-2-binding protei 99.6 2E-15 6.7E-20 114.9 7.9 79 193-276 26-104 (109)
136 1wf1_A RNA-binding protein RAL 99.6 3.3E-15 1.1E-19 113.7 9.0 75 193-278 24-99 (110)
137 2cpd_A Apobec-1 stimulating pr 99.6 8.7E-15 3E-19 109.2 10.8 78 193-281 12-91 (99)
138 2cpy_A RNA-binding protein 12; 99.6 2.1E-15 7.1E-20 115.7 7.4 80 193-277 12-92 (114)
139 2a3j_A U1 small nuclear ribonu 99.6 6.6E-15 2.3E-19 115.1 10.4 78 193-276 26-107 (127)
140 3pgw_S U1-70K; protein-RNA com 99.6 4.1E-15 1.4E-19 139.6 10.4 81 194-277 100-180 (437)
141 2dgw_A Probable RNA-binding pr 99.6 1.1E-14 3.6E-19 106.9 10.4 78 193-276 7-84 (91)
142 3q2s_C Cleavage and polyadenyl 99.6 3.7E-15 1.3E-19 128.3 9.2 79 195-276 67-147 (229)
143 2j8a_A Histone-lysine N-methyl 99.6 2.6E-15 8.9E-20 115.7 7.2 77 197-276 3-93 (136)
144 2dnp_A RNA-binding protein 14; 99.6 1.2E-14 4.1E-19 106.5 9.7 76 193-279 6-81 (90)
145 1fjc_A Nucleolin RBD2, protein 99.6 3.9E-15 1.3E-19 110.3 6.9 77 193-277 13-89 (96)
146 3lqv_A PRE-mRNA branch site pr 99.6 1.3E-14 4.3E-19 111.3 9.8 78 194-277 6-83 (115)
147 1why_A Hypothetical protein ri 99.6 1.6E-14 5.5E-19 107.3 10.1 75 193-276 14-90 (97)
148 4f02_A Polyadenylate-binding p 99.6 9.2E-15 3.2E-19 124.3 9.9 80 194-276 13-92 (213)
149 2hgl_A HNRPF protein, heteroge 99.6 5.5E-15 1.9E-19 116.8 7.8 79 193-276 41-122 (136)
150 2hgn_A Heterogeneous nuclear r 99.6 2E-15 6.9E-20 119.8 5.3 79 193-277 43-121 (139)
151 2dnn_A RNA-binding protein 12; 99.6 7.7E-15 2.6E-19 111.6 8.3 77 194-276 14-90 (109)
152 1wel_A RNA-binding protein 12; 99.6 4.2E-15 1.4E-19 115.7 6.5 80 193-276 22-101 (124)
153 3beg_B Splicing factor, argini 99.6 1.4E-14 4.7E-19 111.3 9.3 66 195-270 15-80 (115)
154 2lmi_A GRSF-1, G-rich sequence 99.6 5.6E-15 1.9E-19 112.0 6.8 79 193-276 8-89 (107)
155 2dgu_A Heterogeneous nuclear r 99.6 2E-14 6.8E-19 108.1 9.8 75 194-279 9-83 (103)
156 1fj7_A Nucleolin RBD1, protein 99.6 1.7E-15 5.8E-20 113.4 3.8 80 193-277 14-93 (101)
157 2dnl_A Cytoplasmic polyadenyla 99.6 8.4E-15 2.9E-19 112.3 7.8 64 194-259 6-72 (114)
158 2ytc_A PRE-mRNA-splicing facto 99.6 2.1E-14 7.1E-19 103.9 9.5 75 193-275 9-83 (85)
159 2db1_A Heterogeneous nuclear r 99.5 8.4E-15 2.9E-19 113.1 7.6 79 193-276 14-95 (118)
160 2xs2_A Deleted in azoospermia- 99.5 5E-15 1.7E-19 111.1 6.2 78 194-277 7-84 (102)
161 2jvo_A Nucleolar protein 3; nu 99.5 1.1E-14 3.6E-19 110.7 8.0 74 193-277 28-101 (108)
162 1nu4_A U1A RNA binding domain; 99.5 7.4E-15 2.5E-19 109.0 6.6 78 193-276 5-86 (97)
163 2f3j_A RNA and export factor b 99.5 2E-14 6.9E-19 118.8 9.7 81 194-278 86-166 (177)
164 2e5j_A Methenyltetrahydrofolat 99.5 1.9E-14 6.5E-19 106.9 8.4 76 193-276 16-91 (97)
165 1wf0_A TDP-43, TAR DNA-binding 99.5 1.7E-14 6E-19 105.1 7.9 74 195-278 4-77 (88)
166 1fxl_A Paraneoplastic encephal 99.5 2.8E-14 9.6E-19 115.6 10.0 79 196-277 2-80 (167)
167 1whx_A Hypothetical protein ri 99.5 3.3E-14 1.1E-18 108.5 9.6 74 195-277 9-82 (111)
168 2e5g_A U6 snRNA-specific termi 99.5 5.2E-14 1.8E-18 103.9 10.2 76 195-279 7-82 (94)
169 1b7f_A Protein (SXL-lethal pro 99.5 3E-14 1E-18 115.8 9.7 80 195-277 2-81 (168)
170 1x5p_A Negative elongation fac 99.5 7.7E-14 2.6E-18 103.6 10.8 76 193-279 12-87 (97)
171 2xnq_A Nuclear polyadenylated 99.5 4.1E-14 1.4E-18 105.3 9.2 73 193-276 19-92 (97)
172 2cqh_A IGF-II mRNA-binding pro 99.5 1.8E-14 6.1E-19 106.2 7.0 77 194-279 6-83 (93)
173 2dha_A FLJ20171 protein; RRM d 99.5 1.3E-14 4.6E-19 112.6 6.5 78 194-276 21-102 (123)
174 2hgm_A HNRPF protein, heteroge 99.5 2.6E-14 8.8E-19 111.4 7.7 78 193-276 39-118 (126)
175 1l3k_A Heterogeneous nuclear r 99.5 6.1E-14 2.1E-18 116.9 10.4 83 193-279 10-92 (196)
176 3d2w_A TAR DNA-binding protein 99.5 3.4E-14 1.2E-18 104.0 7.7 73 193-275 8-80 (89)
177 1wg1_A KIAA1579 protein, homol 99.5 4E-14 1.4E-18 103.3 7.9 73 195-277 4-76 (88)
178 2la4_A Nuclear and cytoplasmic 99.5 2.6E-14 9E-19 106.9 6.9 73 193-274 24-96 (101)
179 3md3_A Nuclear and cytoplasmic 99.5 7E-14 2.4E-18 113.1 9.5 77 197-277 1-77 (166)
180 2cq2_A Hypothetical protein LO 99.5 7.2E-14 2.5E-18 106.6 8.2 82 194-282 23-111 (114)
181 3egn_A RNA-binding protein 40; 99.5 4.5E-14 1.6E-18 112.5 6.9 82 193-277 42-128 (143)
182 2e44_A Insulin-like growth fac 99.5 1E-13 3.5E-18 102.6 8.1 77 194-277 13-90 (96)
183 3nmr_A Cugbp ELAV-like family 99.5 2.2E-13 7.6E-18 111.2 10.6 81 195-276 2-85 (175)
184 2hzc_A Splicing factor U2AF 65 99.5 1E-13 3.5E-18 100.6 7.6 70 195-274 5-85 (87)
185 2qfj_A FBP-interacting repress 99.5 1.5E-13 5.1E-18 116.3 9.5 79 194-275 26-104 (216)
186 3tyt_A Heterogeneous nuclear r 99.4 2.4E-13 8.2E-18 115.0 9.6 76 194-277 2-78 (205)
187 1sjr_A Polypyrimidine tract-bi 99.4 5.3E-13 1.8E-17 108.0 10.9 76 196-276 46-121 (164)
188 2cjk_A Nuclear polyadenylated 99.4 2.1E-13 7.3E-18 110.6 7.3 76 195-275 2-77 (167)
189 2pe8_A Splicing factor 45; RRM 99.4 6.7E-13 2.3E-17 100.1 9.3 80 194-276 6-91 (105)
190 3zzy_A Polypyrimidine tract-bi 99.4 9.2E-13 3.1E-17 102.8 9.7 71 197-275 29-102 (130)
191 2diu_A KIAA0430 protein; struc 99.4 7.7E-13 2.6E-17 96.4 8.3 68 196-276 8-81 (96)
192 2bz2_A Negative elongation fac 99.4 7.6E-13 2.6E-17 102.5 8.4 76 193-279 36-111 (121)
193 2e5i_A Heterogeneous nuclear r 99.4 3.2E-12 1.1E-16 99.1 11.8 69 198-275 27-98 (124)
194 3pgw_A U1-A; protein-RNA compl 99.4 3.1E-12 1.1E-16 112.9 10.9 78 193-276 6-87 (282)
195 2adc_A Polypyrimidine tract-bi 99.3 3.7E-12 1.3E-16 109.3 10.0 77 193-277 31-108 (229)
196 3u1l_A PRE-mRNA-splicing facto 99.3 3.7E-12 1.3E-16 109.6 8.7 78 193-277 131-227 (240)
197 1qm9_A Polypyrimidine tract-bi 99.3 4.8E-12 1.6E-16 105.8 9.1 75 195-277 2-77 (198)
198 2dit_A HIV TAT specific factor 99.3 1.7E-11 5.8E-16 93.4 10.4 77 194-277 13-100 (112)
199 2voo_A Lupus LA protein; RNA-b 99.3 2E-12 6.9E-17 108.3 4.8 79 107-185 10-91 (193)
200 3sde_A Paraspeckle component 1 99.3 6.5E-12 2.2E-16 109.9 8.3 77 191-276 17-93 (261)
201 1jmt_A Splicing factor U2AF 35 99.3 1.4E-12 4.7E-17 98.2 3.2 71 201-275 20-102 (104)
202 3v4m_A Splicing factor U2AF 65 99.3 1.1E-11 3.9E-16 93.3 8.0 79 195-276 4-94 (105)
203 1fje_B Nucleolin RBD12, protei 99.2 1.8E-12 6E-17 106.1 2.7 80 193-277 10-89 (175)
204 1owx_A Lupus LA protein, SS-B, 99.2 4.6E-11 1.6E-15 91.7 9.9 77 192-275 14-92 (121)
205 2d9o_A DNAJ (HSP40) homolog, s 99.2 6.1E-11 2.1E-15 88.4 10.0 61 205-275 26-86 (100)
206 2g4b_A Splicing factor U2AF 65 99.2 2.8E-11 9.4E-16 98.5 8.5 74 195-278 3-87 (172)
207 3ue2_A Poly(U)-binding-splicin 99.2 2.5E-11 8.5E-16 93.4 7.6 79 195-276 19-106 (118)
208 2yh0_A Splicing factor U2AF 65 99.2 6.3E-11 2.2E-15 98.6 9.0 75 195-279 3-88 (198)
209 3tht_A Alkylated DNA repair pr 99.1 1.4E-10 4.8E-15 104.9 8.1 70 193-269 15-87 (345)
210 3s6e_A RNA-binding protein 39; 98.9 9.8E-10 3.4E-14 83.8 5.4 75 195-276 6-90 (114)
211 2dnr_A Synaptojanin-1; RRM dom 98.8 1.1E-08 3.9E-13 73.7 7.9 76 193-280 4-88 (91)
212 3dxb_A Thioredoxin N-terminall 98.6 1.1E-07 3.8E-12 80.8 8.1 66 208-276 141-210 (222)
213 1ufw_A Synaptojanin 2; RNP dom 98.6 6.1E-08 2.1E-12 70.3 5.3 73 193-277 12-93 (95)
214 4f25_A Polyadenylate-binding p 98.2 6.7E-08 2.3E-12 73.6 -2.3 76 130-212 20-113 (115)
215 2l9w_A U4/U6 snRNA-associated- 97.8 4.8E-05 1.6E-09 56.3 6.6 71 195-274 20-95 (117)
216 2dhx_A Poly (ADP-ribose) polym 97.5 0.00093 3.2E-08 48.9 9.7 70 195-276 7-81 (104)
217 3lqv_A PRE-mRNA branch site pr 97.3 9.1E-06 3.1E-10 61.3 -3.6 54 158-221 55-108 (115)
218 1whv_A Poly(A)-specific ribonu 97.0 0.0022 7.6E-08 46.4 7.1 53 196-257 16-68 (100)
219 1uw4_A UPF3X; nonsense mediate 96.9 0.0037 1.3E-07 45.0 7.2 65 197-262 2-68 (91)
220 3ctr_A Poly(A)-specific ribonu 96.8 0.0026 9E-08 46.1 6.0 52 197-257 7-58 (101)
221 2hvz_A Splicing factor, argini 96.8 4.9E-05 1.7E-09 55.8 -3.3 69 130-205 15-100 (101)
222 1wwh_A Nucleoporin 35, nucleop 96.8 0.0059 2E-07 46.0 8.0 72 193-275 21-93 (119)
223 4fxv_A ELAV-like protein 1; RN 96.5 0.00014 4.9E-09 53.3 -2.7 30 158-187 69-98 (99)
224 1wey_A Calcipressin 1; structu 96.1 0.029 9.9E-07 41.1 8.0 71 196-275 5-80 (104)
225 3pq1_A Poly(A) RNA polymerase; 95.2 0.011 3.7E-07 55.2 3.6 58 194-257 51-108 (464)
226 2wbr_A GW182, gawky, LD47780P; 95.2 0.001 3.4E-08 47.7 -2.8 28 158-185 51-78 (89)
227 2l08_A Regulator of nonsense t 95.1 0.033 1.1E-06 40.3 5.1 66 196-262 9-76 (97)
228 3ns6_A Eukaryotic translation 95.0 0.00073 2.5E-08 49.4 -4.1 30 159-188 63-93 (100)
229 3p5t_L Cleavage and polyadenyl 95.0 0.0018 6E-08 46.2 -2.0 32 159-190 54-85 (90)
230 2lxi_A RNA-binding protein 10; 95.0 0.0023 7.8E-08 45.9 -1.4 38 146-190 47-85 (91)
231 2dnq_A RNA-binding protein 4B; 94.7 0.0028 9.7E-08 45.0 -1.4 54 130-190 23-82 (90)
232 2fy1_A RNA-binding motif prote 94.6 0.0058 2E-07 45.9 -0.0 31 159-189 57-87 (116)
233 2cq0_A Eukaryotic translation 94.5 0.0042 1.4E-07 45.3 -1.0 32 159-190 66-97 (103)
234 3s8s_A Histone-lysine N-methyl 94.4 0.0024 8.3E-08 47.6 -2.6 50 130-186 21-84 (110)
235 3bs9_A Nucleolysin TIA-1 isofo 94.4 0.0026 9E-08 44.7 -2.3 30 159-188 57-86 (87)
236 2dnp_A RNA-binding protein 14; 94.3 0.0031 1E-07 44.9 -2.1 54 130-190 24-83 (90)
237 1whw_A Hypothetical protein ri 94.3 0.0046 1.6E-07 44.7 -1.2 32 159-190 59-90 (99)
238 1x5t_A Splicing factor 3B subu 94.3 0.0057 1.9E-07 43.9 -0.8 32 159-190 57-88 (96)
239 1x5u_A Splicing factor 3B subu 94.3 0.0058 2E-07 44.7 -0.7 32 159-190 66-97 (105)
240 3p3d_A Nucleoporin 53; structu 94.2 0.074 2.5E-06 40.6 5.2 74 197-275 8-95 (132)
241 1why_A Hypothetical protein ri 94.2 0.0044 1.5E-07 44.7 -1.6 53 130-189 32-94 (97)
242 2dgt_A RNA-binding protein 30; 94.2 0.004 1.4E-07 44.4 -1.7 53 130-189 25-83 (92)
243 2dgs_A DAZ-associated protein 94.2 0.0059 2E-07 44.1 -0.9 32 158-190 60-91 (99)
244 4a8x_A RNA-binding protein wit 94.2 0.0031 1.1E-07 44.4 -2.3 30 159-188 56-85 (88)
245 1p27_B RNA-binding protein 8A; 94.1 0.0047 1.6E-07 45.3 -1.5 38 145-189 67-104 (106)
246 3md1_A Nuclear and cytoplasmic 94.1 0.0029 9.9E-08 44.1 -2.6 30 159-188 52-81 (83)
247 1x5s_A Cold-inducible RNA-bind 94.1 0.0067 2.3E-07 44.1 -0.7 32 159-190 63-94 (102)
248 2kxn_B Transformer-2 protein h 94.1 0.0057 1.9E-07 46.9 -1.2 30 159-188 97-126 (129)
249 3mdf_A Peptidyl-prolyl CIS-tra 93.9 0.0037 1.3E-07 43.7 -2.4 27 159-185 58-84 (85)
250 2cqb_A Peptidyl-prolyl CIS-tra 93.9 0.0056 1.9E-07 44.5 -1.5 32 159-190 63-94 (102)
251 2do4_A Squamous cell carcinoma 93.9 0.0048 1.6E-07 44.7 -1.8 37 146-189 61-97 (100)
252 2cqi_A Nucleolysin TIAR; RNA r 93.8 0.0046 1.6E-07 45.1 -2.1 32 159-190 64-95 (103)
253 2dgu_A Heterogeneous nuclear r 93.8 0.0039 1.3E-07 45.6 -2.5 54 130-190 26-85 (103)
254 2lcw_A RNA-binding protein FUS 92.9 0.011 3.8E-07 44.1 0.0 33 158-190 65-97 (116)
255 2dnz_A Probable RNA-binding pr 93.8 0.0052 1.8E-07 44.0 -1.8 33 158-190 55-87 (95)
256 2cpz_A CUG triplet repeat RNA- 93.7 0.0063 2.2E-07 45.3 -1.4 38 146-190 70-107 (115)
257 2dnm_A SRP46 splicing factor; 93.7 0.0058 2E-07 44.5 -1.7 31 159-189 64-94 (103)
258 2kvi_A Nuclear polyadenylated 93.7 0.0072 2.5E-07 43.5 -1.2 53 130-189 26-84 (96)
259 2jrs_A RNA-binding protein 39; 93.7 0.0047 1.6E-07 45.8 -2.3 37 145-188 70-106 (108)
260 1whx_A Hypothetical protein ri 93.6 0.0059 2E-07 45.5 -1.8 51 130-187 25-83 (111)
261 2cpj_A Non-POU domain-containi 93.5 0.0061 2.1E-07 44.1 -1.8 31 159-189 60-90 (99)
262 2dgo_A Cytotoxic granule-assoc 93.5 0.0068 2.3E-07 45.1 -1.7 38 146-190 60-97 (115)
263 2cqh_A IGF-II mRNA-binding pro 93.4 0.0074 2.5E-07 43.0 -1.5 32 159-190 53-85 (93)
264 2err_A Ataxin-2-binding protei 93.4 0.0068 2.3E-07 44.9 -1.8 28 160-187 79-106 (109)
265 2cqp_A RNA-binding protein 12; 93.3 0.0099 3.4E-07 42.8 -0.9 36 144-186 58-93 (98)
266 2kn4_A Immunoglobulin G-bindin 93.3 0.04 1.4E-06 43.3 2.6 30 226-257 3-32 (158)
267 2dnh_A Bruno-like 5, RNA bindi 93.3 0.009 3.1E-07 43.6 -1.2 38 146-190 59-99 (105)
268 1oo0_B CG8781-PA, drosophila Y 93.3 0.0063 2.1E-07 44.9 -2.1 37 146-189 71-107 (110)
269 2la4_A Nuclear and cytoplasmic 93.3 0.0045 1.5E-07 44.9 -2.9 51 130-187 42-100 (101)
270 1x4a_A Splicing factor, argini 93.3 0.0079 2.7E-07 44.3 -1.6 31 159-189 70-100 (109)
271 1x4d_A Matrin 3; structural ge 93.3 0.0051 1.7E-07 45.3 -2.6 32 158-189 60-93 (102)
272 2x1f_A MRNA 3'-END-processing 93.3 0.0049 1.7E-07 44.3 -2.7 30 159-188 53-82 (96)
273 2dgv_A HnRNP M, heterogeneous 93.2 0.0074 2.5E-07 42.9 -1.8 53 130-189 23-87 (92)
274 2cpx_A Hypothetical protein FL 93.2 0.013 4.3E-07 43.6 -0.6 38 146-190 70-107 (115)
275 2jvr_A Nucleolar protein 3; RN 93.1 0.0052 1.8E-07 46.0 -2.8 29 159-187 76-104 (111)
276 1x4h_A RNA-binding protein 28; 93.1 0.0088 3E-07 44.1 -1.5 32 159-190 66-103 (111)
277 1p1t_A Cleavage stimulation fa 93.1 0.0086 2.9E-07 43.6 -1.6 36 146-188 53-88 (104)
278 3r27_A HnRNP L, heterogeneous 93.1 0.0043 1.5E-07 45.5 -3.3 30 158-187 65-96 (100)
279 1u6f_A Tcubp1, RNA-binding pro 93.0 0.0099 3.4E-07 45.8 -1.4 32 159-190 93-124 (139)
280 1sjq_A Polypyrimidine tract-bi 93.0 0.005 1.7E-07 45.6 -3.0 32 158-189 60-93 (105)
281 1x4c_A Splicing factor, argini 93.0 0.0071 2.4E-07 44.6 -2.2 52 130-188 30-93 (108)
282 2e5j_A Methenyltetrahydrofolat 93.0 0.16 5.3E-06 36.3 5.2 30 159-188 65-94 (97)
283 2ek1_A RNA-binding protein 12; 93.0 0.0088 3E-07 42.7 -1.7 35 145-186 59-93 (95)
284 1wf1_A RNA-binding protein RAL 92.9 0.0089 3E-07 44.1 -1.8 52 130-188 43-100 (110)
285 2jvo_A Nucleolar protein 3; nu 92.9 0.007 2.4E-07 44.8 -2.4 52 130-188 46-103 (108)
286 2e5h_A Zinc finger CCHC-type a 92.9 0.0085 2.9E-07 42.7 -1.9 28 158-185 66-93 (94)
287 3ex7_B RNA-binding protein 8A; 92.8 0.0096 3.3E-07 45.1 -1.8 32 159-190 73-104 (126)
288 1x4g_A Nucleolysin TIAR; struc 92.6 0.0083 2.8E-07 44.2 -2.3 54 130-190 40-101 (109)
289 2cqc_A Arginine/serine-rich sp 92.6 0.0067 2.3E-07 43.3 -2.8 28 159-186 66-93 (95)
290 2ad9_A Polypyrimidine tract-bi 92.6 0.013 4.3E-07 44.4 -1.3 53 130-189 46-108 (119)
291 2cq3_A RNA-binding protein 9; 92.5 0.29 9.9E-06 35.1 6.1 32 159-190 64-95 (103)
292 2ytc_A PRE-mRNA-splicing facto 92.5 0.0088 3E-07 41.8 -2.3 49 130-185 27-84 (85)
293 2mss_A Protein (musashi1); RNA 92.4 0.0098 3.4E-07 40.4 -2.0 25 159-184 50-74 (75)
294 1s79_A Lupus LA protein; RRM, 92.4 0.0084 2.9E-07 44.1 -2.5 29 158-187 60-88 (103)
295 2ki2_A SS-DNA binding protein 92.4 0.008 2.7E-07 42.5 -2.6 29 160-189 53-81 (90)
296 2xnq_A Nuclear polyadenylated 92.4 0.0086 2.9E-07 43.3 -2.5 51 130-187 38-94 (97)
297 1h2v_Z 20 kDa nuclear CAP bind 92.4 0.012 4.3E-07 46.3 -1.7 37 146-189 84-120 (156)
298 2ywk_A Putative RNA-binding pr 92.3 0.0082 2.8E-07 42.9 -2.7 28 159-186 66-93 (95)
299 3ulh_A THO complex subunit 4; 92.3 0.0087 3E-07 43.8 -2.6 28 159-186 79-106 (107)
300 2i2y_A Fusion protein consists 92.3 0.012 4.1E-07 46.1 -1.9 30 159-188 119-148 (150)
301 1uaw_A Mouse-musashi-1; RNP-ty 92.2 0.014 4.7E-07 39.8 -1.4 26 159-185 51-76 (77)
302 2lea_A Serine/arginine-rich sp 92.2 0.014 4.8E-07 45.0 -1.6 37 146-189 92-128 (135)
303 1x4f_A Matrin 3; structural ge 92.1 0.014 4.9E-07 43.6 -1.5 32 158-189 70-103 (112)
304 2cpd_A Apobec-1 stimulating pr 92.0 0.012 4.2E-07 42.4 -2.0 53 130-189 30-90 (99)
305 2dh8_A DAZ-associated protein 92.0 0.011 3.9E-07 43.1 -2.2 30 160-190 68-97 (105)
306 2dgp_A Bruno-like 4, RNA bindi 92.0 0.014 4.7E-07 42.7 -1.8 38 146-190 58-98 (106)
307 2d9p_A Polyadenylate-binding p 92.0 0.46 1.6E-05 34.0 6.6 39 145-190 57-95 (103)
308 2cpi_A CCR4-NOT transcription 91.9 0.011 3.8E-07 43.8 -2.4 31 159-189 72-102 (111)
309 2la6_A RNA-binding protein FUS 91.8 0.013 4.5E-07 42.3 -2.0 35 144-185 64-98 (99)
310 2cpe_A RNA-binding protein EWS 91.8 0.019 6.5E-07 42.5 -1.2 32 159-190 74-105 (113)
311 3ucg_A Polyadenylate-binding p 91.7 0.0092 3.1E-07 42.0 -2.9 28 159-187 57-84 (89)
312 1x4e_A RNA binding motif, sing 91.7 0.0066 2.3E-07 42.5 -3.7 28 158-185 55-82 (85)
313 2j76_E EIF-4B, EIF4B, eukaryot 91.7 0.023 7.8E-07 41.2 -0.8 30 158-188 69-98 (100)
314 3beg_B Splicing factor, argini 91.7 0.017 5.9E-07 43.1 -1.5 45 130-181 31-82 (115)
315 2fc9_A NCL protein; structure 91.6 0.027 9.3E-07 40.6 -0.4 38 145-189 55-92 (101)
316 2dhg_A TRNA selenocysteine ass 91.3 0.017 5.8E-07 42.0 -1.9 31 159-189 60-91 (104)
317 2diu_A KIAA0430 protein; struc 91.3 0.12 4E-06 37.4 2.6 39 145-190 48-86 (96)
318 2cq1_A PTB-like protein L; RRM 91.2 0.021 7.2E-07 41.8 -1.5 52 131-189 31-92 (101)
319 1wel_A RNA-binding protein 12; 91.2 0.026 9E-07 42.6 -0.9 38 142-187 66-103 (124)
320 1rk8_A CG8781-PA, CG8781-PA pr 91.2 0.016 5.5E-07 46.2 -2.3 31 159-189 123-153 (165)
321 2bz2_A Negative elongation fac 91.2 0.095 3.2E-06 39.4 2.2 31 159-189 82-112 (121)
322 2do0_A HnRNP M, heterogeneous 91.1 0.016 5.5E-07 42.9 -2.2 29 159-187 65-93 (114)
323 2khc_A Testis-specific RNP-typ 91.0 0.011 3.6E-07 44.3 -3.4 27 159-185 91-117 (118)
324 3n9u_C Cleavage and polyadenyl 91.0 0.015 5.2E-07 46.1 -2.6 30 158-187 107-136 (156)
325 1fj7_A Nucleolin RBD1, protein 90.8 0.018 6.3E-07 41.6 -2.1 37 145-189 60-96 (101)
326 2dgx_A KIAA0430 protein; RRM d 90.7 0.33 1.1E-05 34.5 4.6 31 159-189 61-91 (96)
327 2lkz_A RNA-binding protein 5; 90.6 0.017 5.8E-07 41.7 -2.5 28 159-186 62-93 (95)
328 2jwn_A Embryonic polyadenylate 90.6 0.023 7.8E-07 42.8 -1.9 51 130-188 51-115 (124)
329 2cph_A RNA binding motif prote 90.5 0.71 2.4E-05 33.2 6.5 39 145-190 60-99 (107)
330 2ku7_A MLL1 PHD3-CYP33 RRM chi 90.5 0.019 6.4E-07 44.1 -2.5 26 159-184 114-139 (140)
331 2kt5_A RNA and export factor-b 90.4 0.024 8.2E-07 42.7 -1.9 31 159-189 85-115 (124)
332 1wex_A Hypothetical protein (r 90.4 0.021 7.2E-07 42.0 -2.1 52 130-188 30-91 (104)
333 2a3j_A U1 small nuclear ribonu 90.3 0.092 3.2E-06 40.0 1.4 36 146-188 75-110 (127)
334 2e44_A Insulin-like growth fac 90.3 0.37 1.3E-05 34.0 4.7 36 146-188 57-92 (96)
335 1x5p_A Negative elongation fac 90.2 0.12 4.1E-06 36.9 1.9 53 131-190 29-89 (97)
336 1x4b_A Heterogeneous nuclear r 90.2 0.026 8.8E-07 42.0 -1.9 31 159-190 78-108 (116)
337 3egn_A RNA-binding protein 40; 90.1 0.026 9.1E-07 43.6 -1.9 32 158-189 100-131 (143)
338 2m2b_A RNA-binding protein 10; 89.9 0.037 1.3E-06 42.2 -1.2 30 159-189 76-109 (131)
339 2div_A TRNA selenocysteine ass 89.9 0.56 1.9E-05 33.2 5.4 35 146-187 55-93 (99)
340 2nlw_A Eukaryotic translation 89.8 0.014 4.8E-07 42.7 -3.5 35 146-187 64-99 (105)
341 1fjc_A Nucleolin RBD2, protein 89.8 0.022 7.5E-07 40.7 -2.4 38 144-188 54-91 (96)
342 1sjr_A Polypyrimidine tract-bi 89.5 0.028 9.5E-07 45.0 -2.2 52 130-188 61-124 (164)
343 2cqd_A RNA-binding region cont 89.4 0.031 1.1E-06 41.5 -1.9 29 159-188 68-96 (116)
344 3q2s_C Cleavage and polyadenyl 89.2 0.027 9.3E-07 47.6 -2.7 30 158-187 120-149 (229)
345 2dng_A Eukaryotic translation 89.1 0.035 1.2E-06 40.3 -1.8 38 145-190 58-95 (103)
346 2rs2_A Musashi-1, RNA-binding 89.1 0.03 1E-06 41.3 -2.2 31 158-189 75-105 (109)
347 2cq2_A Hypothetical protein LO 89.1 0.053 1.8E-06 40.6 -0.8 39 130-175 42-88 (114)
348 3pgw_S U1-70K; protein-RNA com 88.9 0.09 3.1E-06 48.8 0.4 31 158-188 152-182 (437)
349 1iqt_A AUF1, heterogeneous nuc 88.8 0.028 9.5E-07 38.1 -2.4 24 160-184 51-74 (75)
350 2f3j_A RNA and export factor b 88.7 0.046 1.6E-06 44.2 -1.5 30 159-188 138-167 (177)
351 3zzy_A Polypyrimidine tract-bi 88.5 0.028 9.5E-07 43.2 -2.8 51 130-187 43-105 (130)
352 1x5o_A RNA binding motif, sing 88.4 0.042 1.4E-06 40.6 -1.8 21 159-179 75-95 (114)
353 2cq4_A RNA binding motif prote 88.3 0.017 5.7E-07 42.9 -4.1 29 159-188 76-104 (114)
354 2cpf_A RNA binding motif prote 88.2 1.1 3.7E-05 31.6 5.9 31 159-189 59-89 (98)
355 1wi8_A EIF-4B, eukaryotic tran 88.1 0.038 1.3E-06 40.1 -2.2 38 145-190 59-96 (104)
356 2dis_A Unnamed protein product 88.1 0.042 1.4E-06 40.2 -2.0 32 159-190 61-94 (109)
357 2dit_A HIV TAT specific factor 88.0 0.22 7.6E-06 36.6 2.0 38 145-189 66-103 (112)
358 1nu4_A U1A RNA binding domain; 87.9 0.16 5.6E-06 36.0 1.2 36 146-188 54-89 (97)
359 3s7r_A Heterogeneous nuclear r 87.7 0.032 1.1E-06 39.0 -2.7 25 159-184 62-86 (87)
360 1wg1_A KIAA1579 protein, homol 87.7 0.04 1.4E-06 38.7 -2.2 28 159-186 49-76 (88)
361 2dnr_A Synaptojanin-1; RRM dom 87.7 0.6 2E-05 33.3 4.0 34 146-187 52-85 (91)
362 2hzc_A Splicing factor U2AF 65 87.4 0.025 8.7E-07 39.4 -3.4 31 146-184 56-86 (87)
363 2krb_A Eukaryotic translation 86.5 0.18 6.3E-06 34.5 0.8 31 145-182 49-80 (81)
364 1ufw_A Synaptojanin 2; RNP dom 86.1 0.21 7.3E-06 35.8 0.9 33 146-186 61-93 (95)
365 2lmi_A GRSF-1, G-rich sequence 85.8 0.08 2.7E-06 38.7 -1.6 35 145-187 57-91 (107)
366 2hgl_A HNRPF protein, heteroge 85.4 0.064 2.2E-06 41.4 -2.3 35 144-186 89-123 (136)
367 2e5g_A U6 snRNA-specific termi 85.4 2.1 7.2E-05 29.9 6.1 28 160-188 55-82 (94)
368 3s6e_A RNA-binding protein 39; 85.3 0.33 1.1E-05 36.1 1.7 36 144-186 56-91 (114)
369 2cqg_A TDP-43, TAR DNA-binding 84.9 0.094 3.2E-06 37.8 -1.5 36 146-190 60-95 (103)
370 1jmt_A Splicing factor U2AF 35 84.4 0.31 1.1E-05 35.5 1.2 35 144-185 69-103 (104)
371 3d45_A Poly(A)-specific ribonu 84.3 3 0.0001 39.3 8.2 52 197-257 441-492 (507)
372 2db1_A Heterogeneous nuclear r 83.5 0.078 2.7E-06 39.6 -2.5 37 142-186 60-96 (118)
373 1wg5_A Heterogeneous nuclear r 83.4 0.15 5E-06 37.0 -1.0 28 159-187 66-93 (104)
374 2fc8_A NCL protein; structure 83.1 0.91 3.1E-05 32.3 3.2 42 142-190 53-94 (102)
375 2cpy_A RNA-binding protein 12; 81.1 1.7 5.7E-05 31.8 4.1 36 145-188 59-94 (114)
376 2dgw_A Probable RNA-binding pr 79.4 1.6 5.4E-05 30.3 3.3 39 142-188 49-87 (91)
377 1wez_A HnRNP H', FTP-3, hetero 78.1 3.8 0.00013 29.2 5.2 39 142-188 54-92 (102)
378 2xs2_A Deleted in azoospermia- 77.3 0.073 2.5E-06 38.4 -4.5 35 146-189 53-87 (102)
379 3u1l_A PRE-mRNA-splicing facto 77.1 0.8 2.7E-05 38.8 1.3 52 130-188 158-229 (240)
380 2pe8_A Splicing factor 45; RRM 77.0 1.7 5.8E-05 31.5 3.0 38 143-187 56-93 (105)
381 2e5i_A Heterogeneous nuclear r 76.6 4.4 0.00015 30.4 5.3 52 130-188 40-102 (124)
382 3v4m_A Splicing factor U2AF 65 76.4 1.7 5.9E-05 31.5 2.9 35 145-186 61-95 (105)
383 1wfx_A Probable RNA 2'-phospho 75.8 1.2 4.1E-05 36.1 2.0 48 20-70 24-75 (186)
384 2dnn_A RNA-binding protein 12; 75.2 0.2 6.7E-06 37.0 -2.6 35 144-186 57-91 (109)
385 2hgn_A Heterogeneous nuclear r 74.4 0.2 7E-06 38.7 -2.8 28 159-187 95-122 (139)
386 4eyt_A Telomerase associated p 73.8 20 0.00069 25.1 9.4 70 194-276 10-79 (129)
387 2dha_A FLJ20171 protein; RRM d 72.1 6.2 0.00021 29.4 5.1 35 144-186 69-103 (123)
388 3ue2_A Poly(U)-binding-splicin 71.6 3.2 0.00011 30.8 3.4 36 144-186 72-107 (118)
389 2j8a_A Histone-lysine N-methyl 71.5 0.12 4E-06 39.7 -4.7 23 162-184 68-92 (136)
390 2d9o_A DNAJ (HSP40) homolog, s 63.1 4 0.00014 29.3 2.3 28 160-189 64-91 (100)
391 2hgm_A HNRPF protein, heteroge 58.0 12 0.0004 28.0 4.2 37 143-187 84-120 (126)
392 3j21_T 50S ribosomal protein L 49.0 42 0.0014 23.3 5.6 56 199-257 25-82 (86)
393 3dxb_A Thioredoxin N-terminall 44.8 18 0.00062 29.3 3.7 28 159-186 184-211 (222)
394 3htx_A HEN1; HEN1, small RNA m 40.8 5.3 0.00018 40.1 -0.2 75 1-80 115-210 (950)
395 1wey_A Calcipressin 1; structu 40.5 27 0.00092 25.3 3.5 55 132-186 27-82 (104)
396 3tht_A Alkylated DNA repair pr 34.4 45 0.0015 29.5 4.8 40 130-176 35-82 (345)
397 1vq8_S 50S ribosomal protein L 33.1 64 0.0022 22.3 4.4 53 199-254 24-78 (85)
398 1wih_A Mitochondrial ribosome 24.0 60 0.002 22.4 2.9 43 26-68 20-72 (84)
399 1xn9_A 30S ribosomal protein S 23.7 2E+02 0.0068 20.4 5.9 50 206-256 28-82 (101)
400 4e8u_A Putative uncharacterize 23.1 2.1E+02 0.0073 22.5 6.3 48 197-247 13-71 (172)
401 3u5e_X 60S ribosomal protein L 22.5 1.3E+02 0.0044 22.9 4.8 55 199-256 81-137 (142)
402 4a17_R RPL23A, 60S ribosomal p 22.1 1.3E+02 0.0044 23.2 4.7 54 200-256 90-145 (150)
No 1
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=100.00 E-value=4.8e-36 Score=252.88 Aligned_cols=167 Identities=28% Similarity=0.467 Sum_probs=142.6
Q ss_pred CeeecCCCCcCcChHHHHhhc-cCCCEEeeeeecchhhhhccCCHHHHHHHHhcC--cceeeccCcceeecccccccccc
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKS--KLLEVTEDGTKVKGNIIRHFLVP 77 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~-~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s--~~~~v~~~~~~vrr~~~~~~~~p 77 (299)
|||||||+||++|.||+++|+ ++|||||++|++|+||++|+.|.+.|.+||+.| ..|++++++.+|||.. ..|
T Consensus 20 ~e~yfs~~nl~~D~fl~~~~~~~~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed~~~vrR~~----~~p 95 (193)
T 2voo_A 20 IEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSP----SKP 95 (193)
T ss_dssp HHHHTSTTTGGGCHHHHHHHHHTTTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTTSSEEEECT----TSC
T ss_pred hheecchhhcccCHHHHHHhcccCCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEecccceEEecc----cCC
Confidence 699999999999999999998 589999999999999999999999999999999 8999999999999863 333
Q ss_pred ccccccccccccCccccccccCCCCcCchHHHHHHHHHHhhhhcCCCCcchhHHHHHhhhcCCCeeeeeeecccccccCC
Q psy3930 78 ISMETEASDNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLT 157 (299)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~k~r~r~~~~~~~i~~q~efyfsd~nL~~d~fl~~~~~~~~~~~l~~f~~F~~i~~~~ 157 (299)
.|..+++ +
T Consensus 96 ~p~~~~~----------------------------------~-------------------------------------- 103 (193)
T 2voo_A 96 LPEVTDE----------------------------------Y-------------------------------------- 103 (193)
T ss_dssp CCCCCHH----------------------------------H--------------------------------------
T ss_pred Ccccchh----------------------------------h--------------------------------------
Confidence 3311100 0
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCc
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~ 237 (299)
... ...++|||+|||+++++++|+++|++||.|..|+++++. +|.+
T Consensus 104 ------~~~---------------------------~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~ 149 (193)
T 2voo_A 104 ------KND---------------------------VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAF 149 (193)
T ss_dssp ------HHH---------------------------HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCE
T ss_pred ------hhc---------------------------cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCc
Confidence 000 012689999999999999999999999999999999987 6999
Q ss_pred ceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeecccCC
Q psy3930 238 KGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLSFGI 281 (299)
Q Consensus 238 kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~~~~~ 281 (299)
+|||||+|.+.++|++|++. ++ ..++|+.|.|+.+..|..
T Consensus 150 kG~aFVeF~~~e~A~~A~~~-~~---~~~~Gr~l~V~~~~~y~~ 189 (193)
T 2voo_A 150 KGSIFVVFDSIESAKKFVET-PG---QKYKETDLLILFKDDYFA 189 (193)
T ss_dssp EEEEEEEESSHHHHHHHHHC-TT---CEETTEECEEEETTTC--
T ss_pred ccEEEEEECCHHHHHHHHHh-CC---CeECCEEEEEEEhHHHHH
Confidence 99999999999999999986 54 478999999998877743
No 2
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=99.96 E-value=1.7e-30 Score=192.25 Aligned_cols=70 Identities=30% Similarity=0.507 Sum_probs=68.9
Q ss_pred CeeecCCCCcCcChHHHHhhccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCcceeeccc
Q psy3930 1 MEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKGNI 70 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~~~vrr~~ 70 (299)
|||||||+||++|.||+++|+.+|||||++|++||||++|++|++.|++||+.|+.|||++|+++|||+.
T Consensus 22 vEyYFSd~NL~~D~fL~~~md~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsedg~kVRr~~ 91 (101)
T 2cqk_A 22 LEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSH 91 (101)
T ss_dssp HHHHTSHHHHHHCHHHHHHSCTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSSEEEECC
T ss_pred HHhhcchhhhccCHHHHHhhhcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCCCCeeeeCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999987
No 3
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=99.95 E-value=3.7e-30 Score=188.10 Aligned_cols=70 Identities=30% Similarity=0.513 Sum_probs=67.7
Q ss_pred CeeecCCCCcCcChHHHHhh--ccCCCEEeeeeecchhhhhccCCHHHHHHHHhcCcceeeccCcceeeccc
Q psy3930 1 MEFYLSDSNLRKDRFFSQLL--QESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKGNI 70 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~--~~~~~v~~~~~~~f~~~~~~~~~~~~i~~a~~~s~~~~v~~~~~~vrr~~ 70 (299)
|||||||+||++|.||+++| +.+|||||++|++||||++||.|.+.|++||+.|+.|||++||++|||+.
T Consensus 18 vEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg~~VRR~~ 89 (92)
T 1s29_A 18 VEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGLMVRRRD 89 (92)
T ss_dssp HHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSSEEEESS
T ss_pred HHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCCCEEeCCC
Confidence 69999999999999999999 67899999999999999999999999999999999999999999999974
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.1e-20 Score=153.68 Aligned_cols=114 Identities=17% Similarity=0.274 Sum_probs=104.5
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLK 238 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~k 238 (299)
+.++|.+|+..+++..+.++.+++..+.+.........++|||+|||.++++++|+++|++||.|..+.++++..+|.++
T Consensus 50 ~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~ 129 (166)
T 3md3_A 50 QSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSR 129 (166)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEE
T ss_pred CHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcc
Confidence 38999999999999999999999998876666667778999999999999999999999999999999999998899999
Q ss_pred eEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 239 GFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 239 g~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
|||||+|.+.++|.+|+.. +|| ..++|+.|.|..
T Consensus 130 g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~i~v~~ 163 (166)
T 3md3_A 130 GYGFVSFTSQDDAQNAMDS-MQG--QDLNGRPLRINW 163 (166)
T ss_dssp EEEEEEESCHHHHHHHHHH-HTT--CEETTEECEEEE
T ss_pred eEEEEEeCCHHHHHHHHHH-hCC--CccCCcEEEEEe
Confidence 9999999999999999999 898 678899987765
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.80 E-value=9e-20 Score=148.77 Aligned_cols=114 Identities=26% Similarity=0.427 Sum_probs=100.0
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLK 238 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~k 238 (299)
+.++|.+|++.+++..+.++.+.+.++.+... ....++|||+|||..+++++|+++|++||.|..+.++++..+|.++
T Consensus 54 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~ 131 (168)
T 1b7f_A 54 SEMDSQRAIKVLNGITVRNKRLKVSYARPGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPR 131 (168)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCCSS--TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEE
T ss_pred CHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc--cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcc
Confidence 48999999999999999999999988765443 4567899999999999999999999999999999999998899999
Q ss_pred eEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 239 GFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 239 g~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
|||||+|.+.++|.+|++. +||..+...+++|.|..
T Consensus 132 g~afV~f~~~~~A~~A~~~-l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 132 GVAFVRYNKREEAQEAISA-LNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp EEEEEEESSHHHHHHHHHH-HTTCCCTTCSSCCEEEE
T ss_pred eEEEEEECCHHHHHHHHHH-hcCCEecCCCeEEEEEe
Confidence 9999999999999999999 89844443448887764
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.79 E-value=1.1e-19 Score=154.43 Aligned_cols=140 Identities=22% Similarity=0.333 Sum_probs=114.3
Q ss_pred HHHHHhhhcCCCee-ee-------------eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccCC----
Q psy3930 130 RFFSQLLQESPEIE-VS-------------VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDK---- 191 (299)
Q Consensus 130 ~fl~~~~~~~~~~~-l~-------------~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~---- 191 (299)
.-|..++..++.+. +. .|+.|. +.++|.+|+..+++..+.++.++|.+.......
T Consensus 43 ~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~-------~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~ 115 (216)
T 2qfj_A 43 DTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYE-------VPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPII 115 (216)
T ss_dssp HHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEES-------SHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHH
T ss_pred HHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeC-------CHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhh
Confidence 56777777777521 22 344443 489999999999999999999999876533211
Q ss_pred -----CCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCC
Q psy3930 192 -----PDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDY 266 (299)
Q Consensus 192 -----~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~ 266 (299)
.....++|||+|||.++++++|+++|++||.|..|.++++..+|.++|||||+|.+.++|.+|++. +|| ..+
T Consensus 116 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-l~g--~~~ 192 (216)
T 2qfj_A 116 DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS-MNL--FDL 192 (216)
T ss_dssp HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-HTT--CBC
T ss_pred hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH-ccC--CEe
Confidence 134568999999999999999999999999999999999988999999999999999999999999 898 778
Q ss_pred CCceEEEEeeccc
Q psy3930 267 QSSILTTTSRLSF 279 (299)
Q Consensus 267 ~g~~l~v~~k~~~ 279 (299)
.|+.|.|......
T Consensus 193 ~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 193 GGQYLRVGKAVTP 205 (216)
T ss_dssp SSSBCEEEECSSC
T ss_pred CCcEEEEEEecCC
Confidence 9999988775544
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=1.3e-19 Score=151.62 Aligned_cols=116 Identities=21% Similarity=0.328 Sum_probs=96.3
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccCC----CCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCC
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDK----PDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKST 234 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~----~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~ 234 (299)
+.++|.+|+.. ++..+.+..+.+.++.+.... .....++|||+|||.++++++|+++|++||.|..|.++++..+
T Consensus 64 ~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 142 (196)
T 1l3k_A 64 TVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 142 (196)
T ss_dssp SHHHHHHHHHT-CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTT
T ss_pred CHHHHHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC
Confidence 38999999966 778899999998876544322 1344589999999999999999999999999999999999889
Q ss_pred CCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeeccc
Q psy3930 235 GKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLSF 279 (299)
Q Consensus 235 g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~~~ 279 (299)
|.++|||||+|.+.++|.+|+.. +| ..++|+.|.|......
T Consensus 143 g~~~g~afV~F~~~~~A~~A~~~--~~--~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 143 GKKRGFAFVTFDDHDSVDKIVIQ--KY--HTVNGHNCEVRKALSK 183 (196)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHC--SC--CEETTEECEEEECC--
T ss_pred CCccceEEEEECCHHHHHHHHHh--CC--cEECCEEEEEEecCCh
Confidence 99999999999999999999986 46 7888999988776554
No 8
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.78 E-value=3.9e-20 Score=157.74 Aligned_cols=114 Identities=18% Similarity=0.253 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCc
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~ 237 (299)
.+.++|.+|++.+++..+.++.+++..+...........++|||+|||+++++++|+++|++||.|..|+++++. +.+
T Consensus 65 ~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~ 142 (213)
T 4f02_A 65 QQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGS 142 (213)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEE
T ss_pred CCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCC
Confidence 348999999999999999999888877654433333456789999999999999999999999999999999884 457
Q ss_pred ceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 238 KGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 238 kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
+|||||+|.+.++|++|++. ||| ..++|+.|.|...
T Consensus 143 ~g~~fV~f~~~~~a~~Ai~~-lng--~~~~g~~i~V~~a 178 (213)
T 4f02_A 143 KGYGFVHFETQEAAERAIEK-MNG--MLLNDRKVFVGRF 178 (213)
T ss_dssp EEEEEEEESSHHHHHHHHHH-HTT--CEETTEECEEEEC
T ss_pred ceEEEEEeCCHHHHHHHHHH-hCC--CEECCEEEEEEEc
Confidence 99999999999999999999 898 7889999998764
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.78 E-value=3.7e-18 Score=138.71 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=99.3
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEE
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTY 225 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~ 225 (299)
.|+.|.+ .++|.+|++.+++..+.++.+++....+... ....++|||+|||.++++++|+++|++||.|..
T Consensus 47 afV~f~~-------~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 117 (167)
T 1fxl_A 47 GFVNYID-------PKDAEKAINTLNGLRLQTKTIKVSYARPSSA--SIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 117 (167)
T ss_dssp EEEEESS-------HHHHHHHHHHHTTCEETTEECEEEECCCCCG--GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred EEEEECC-------HHHHHHHHHHcCCCccCCceEEEEecCCCcc--cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeE
Confidence 4555554 8999999999999999999999987765433 445689999999999999999999999999999
Q ss_pred EEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 226 VSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 226 v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
+.++++..+|.++|||||+|.+.++|.+|++. +|| ..+.|+.+
T Consensus 118 ~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~~ 160 (167)
T 1fxl_A 118 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG-LNG--QKPSGATE 160 (167)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-HTT--CCCTTCSS
T ss_pred EEEEecCCCCCccceEEEEeCCHHHHHHHHHH-hcC--CccCCCcc
Confidence 99999888999999999999999999999999 898 56667653
No 10
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=131.02 Aligned_cols=80 Identities=28% Similarity=0.422 Sum_probs=74.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
..++++|||+|||+++|+++|+++|++||+|..|++++++.+|.++|||||+|.+.++|++|++. +|| ..+.|++|.
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~-lng--~~~~gr~l~ 92 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT-LNG--LRLQSKTIK 92 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHH-HTT--CEETTEECE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHH-hCC--CEECCEEEE
Confidence 45578999999999999999999999999999999999998999999999999999999999999 898 778899887
Q ss_pred EEe
Q psy3930 273 TTS 275 (299)
Q Consensus 273 v~~ 275 (299)
|..
T Consensus 93 V~~ 95 (99)
T 4fxv_A 93 VSY 95 (99)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.76 E-value=2.7e-19 Score=146.54 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=102.8
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEE
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTY 225 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~ 225 (299)
.|+.|.+ .++|.+|+ .+++..+.++.+++.++.+... ....++|||+|||.++++++|+++|++||.|..
T Consensus 54 afV~f~~-------~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~--~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~ 123 (172)
T 2g4b_A 54 AFLEFRS-------VDETTQAM-AFDGIIFQGQSLKIRRPHDYQP--LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKA 123 (172)
T ss_dssp EEEEESS-------HHHHHHHG-GGTTCEETTEECEEECCSSCCC--CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEE
T ss_pred EEEEeCC-------HHHHHHHH-HhCCcEecCceeeecCCcccCC--CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceE
Confidence 4556655 89999999 8999999999999987654332 345789999999999999999999999999999
Q ss_pred EEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 226 VSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 226 v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
+.++++..+|.++|||||+|.+.++|.+|++. +|| ..++|+.|.|..
T Consensus 124 v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~V~~ 170 (172)
T 2g4b_A 124 FNLVKDSATGLSKGYAFCEYVDINVTDQAIAG-LNG--MQLGDKKLLVQR 170 (172)
T ss_dssp EEEEECTTTCSEEEEEEEEESSTTHHHHHHHH-HTT--CEETTEECEEEE
T ss_pred EEEEecCCCCCcceEEEEEeCCHHHHHHHHHH-cCC--CEECCeEEEEEe
Confidence 99999988999999999999999999999999 898 778899998865
No 12
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=123.52 Aligned_cols=83 Identities=28% Similarity=0.418 Sum_probs=76.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|++|.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ-LNG--FELAGRPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHH-HTT--CCSSSSCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH-hCC--CeeCCcEEEE
Confidence 3468999999999999999999999999999999999988899999999999999999999999 898 7888999988
Q ss_pred Eeeccc
Q psy3930 274 TSRLSF 279 (299)
Q Consensus 274 ~~k~~~ 279 (299)
......
T Consensus 80 ~~a~~~ 85 (95)
T 2dnz_A 80 GHVTER 85 (95)
T ss_dssp EESSCC
T ss_pred EEcccc
Confidence 775443
No 13
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.2e-18 Score=125.59 Aligned_cols=87 Identities=21% Similarity=0.371 Sum_probs=77.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEE-EeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYV-SLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v-~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
...++|||+|||+++++++|+++|++||.|..| .+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|++|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~ 79 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA-MNG--QYLCNRPIT 79 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHT-TTT--CEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHH-cCC--CEECCEEEE
Confidence 346899999999999999999999999999999 9999978999999999999999999999999 898 778899998
Q ss_pred EEeecccCCCC
Q psy3930 273 TTSRLSFGITP 283 (299)
Q Consensus 273 v~~k~~~~~~~ 283 (299)
|..........
T Consensus 80 v~~a~~~~~~~ 90 (96)
T 1x5t_A 80 VSYAFKKDSKG 90 (96)
T ss_dssp EEESCCCCCCC
T ss_pred EEEecccCCCC
Confidence 88755543333
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=127.63 Aligned_cols=77 Identities=27% Similarity=0.397 Sum_probs=70.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
.+|||+|||+++|+++|+++|++|| .|..|++++++.+|.++|||||+|.+.++|++|++.+.++ ..++|++|.|..
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~--~~~~gr~i~V~~ 79 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHS--LNILGQKVSMHY 79 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTE--EEETTEEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCC--eEECCEEEEEEE
Confidence 6899999999999999999999999 8999999999989999999999999999999999983455 678899887765
No 15
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=123.57 Aligned_cols=85 Identities=27% Similarity=0.369 Sum_probs=77.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.++++..+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 81 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE-VDG--QVFQGRMLH 81 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHH-TTT--EESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHH-hCC--CEECCcEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999 998 778899998
Q ss_pred EEeecccC
Q psy3930 273 TTSRLSFG 280 (299)
Q Consensus 273 v~~k~~~~ 280 (299)
|.......
T Consensus 82 V~~a~~~~ 89 (99)
T 1whw_A 82 VLPSTIKK 89 (99)
T ss_dssp EEECCCCS
T ss_pred EEEcCCCc
Confidence 88765543
No 16
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.74 E-value=1.7e-17 Score=134.62 Aligned_cols=128 Identities=19% Similarity=0.224 Sum_probs=97.0
Q ss_pred eeeeeeecccccccCCCCHHHHHHHHHhcCccc-------cccccceeeeeecc----cCCCCCCCcEEEEecCCCCCCH
Q psy3930 142 IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE-------VTEDGTKVRRTVVV----QDKPDVDECTIYVEKLPPEAEH 210 (299)
Q Consensus 142 ~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~-------~~~~~~~v~r~~~~----~~~~~~~~~~l~V~nLp~~~t~ 210 (299)
..+-.|+.|.+ .++|++|+..+++-. +.+........... ........++|||+|||+++++
T Consensus 12 ~~G~~fV~f~~-------~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 84 (158)
T 2kn4_A 12 LKGETTTEAVD-------AATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSP 84 (158)
T ss_dssp CEEEEEEECSS-------HHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCH
T ss_pred ccchhHHHHHH-------HHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 34455777766 788889987665321 12222221111111 1112355789999999999999
Q ss_pred HHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeeccc
Q psy3930 211 DYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLSF 279 (299)
Q Consensus 211 e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~~~ 279 (299)
++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|++|.|......
T Consensus 85 ~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 85 DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA-MDG--AVLDGRELRVQMARYG 150 (158)
T ss_dssp HHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHH-STT--EESSSSEEEEEEECCS
T ss_pred HHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHH-hCC--CEECCeEEEEEECCCC
Confidence 99999999999999999999988999999999999999999999999 998 7788999988875443
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.74 E-value=6e-19 Score=143.81 Aligned_cols=111 Identities=17% Similarity=0.325 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCc
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~ 237 (299)
.+.++|.+|+.. +..+.+..+.+.+..+... ....++|||+|||.++++++|+++|++||.|..+.++++..+|.+
T Consensus 53 ~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~--~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~ 128 (167)
T 2cjk_A 53 EKPSSVDEVVKT--QHILDGKVIDPKRAIPRDE--QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQS 128 (167)
T ss_dssp SSTHHHHHHHHS--CCEETTEECCCEECCCHHH--HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTT
T ss_pred ccHHHHHHHHhc--ccccCCeEcccccccchhh--ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCcc
Confidence 347899999975 4578888888877654432 234579999999999999999999999999999999999889999
Q ss_pred ceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 238 KGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 238 kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
+|||||+|.+.++|.+|++ ++| ..+.|+.|.|...
T Consensus 129 ~g~afV~f~~~~~a~~A~~--~~~--~~~~g~~i~V~~a 163 (167)
T 2cjk_A 129 RGFGFVTYDSADAVDRVCQ--NKF--IDFKDRKIEIKRA 163 (167)
T ss_dssp SEEEEEEESSHHHHHHHHH--CSE--ECSSSSCEEEEEC
T ss_pred ceEEEEEECCHHHHHHHHh--CCC--EEeCCeEEEEeec
Confidence 9999999999999999998 577 8888999987753
No 18
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=125.64 Aligned_cols=86 Identities=26% Similarity=0.330 Sum_probs=78.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.++++..+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~ 86 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA-MDG--AELDGRELR 86 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHH-HSS--CCBTTBCCE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHH-cCC--CEECCcEEE
Confidence 45578999999999999999999999999999999999988899999999999999999999999 888 778899998
Q ss_pred EEeecccCC
Q psy3930 273 TTSRLSFGI 281 (299)
Q Consensus 273 v~~k~~~~~ 281 (299)
|........
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dnm_A 87 VQVARYGRR 95 (103)
T ss_dssp EEECSSCCS
T ss_pred EEECCcCCC
Confidence 887654433
No 19
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=125.02 Aligned_cols=90 Identities=26% Similarity=0.395 Sum_probs=79.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~ 85 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA-MNG--KSVDGRQIR 85 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHH-HTT--CCTTSCCCE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH-hCC--CEECCeEEE
Confidence 44578999999999999999999999999999999999988899999999999999999999999 888 778899999
Q ss_pred EEeecccCCCCCC
Q psy3930 273 TTSRLSFGITPLG 285 (299)
Q Consensus 273 v~~k~~~~~~~r~ 285 (299)
|.........+++
T Consensus 86 v~~a~~~~~~~~~ 98 (102)
T 1x5s_A 86 VDQAGKSSDNRSG 98 (102)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEECCCCCCCCCC
Confidence 9886655444443
No 20
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=127.68 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=75.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
+..++|||+|||+++++++|+++|++||.|..|.++++..+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~-lng--~~~~gr~i~V 80 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKN-LHL--TSVMGNIIHA 80 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-HTT--CEETTEECEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHH-hCC--CEECCeEEEE
Confidence 3468999999999999999999999999999999999998999999999999999999999999 898 8888999998
Q ss_pred Eee
Q psy3930 274 TSR 276 (299)
Q Consensus 274 ~~k 276 (299)
...
T Consensus 81 ~~a 83 (110)
T 3s8s_A 81 QLD 83 (110)
T ss_dssp EEC
T ss_pred EEC
Confidence 774
No 21
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.73 E-value=1.2e-16 Score=130.79 Aligned_cols=114 Identities=16% Similarity=0.265 Sum_probs=91.3
Q ss_pred CHHHHHHHHHhcCcccccc---ccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCC
Q psy3930 159 DPDDVVKALRKSKLLEVTE---DGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTG 235 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~---~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g 235 (299)
+.++|.+|++.+++..+.+ ..+.+....+... .....++|||+|||.++++++|+++|++||.|..+.++++. +|
T Consensus 56 ~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g 133 (175)
T 3nmr_A 56 TRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKN-NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DG 133 (175)
T ss_dssp SHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCC-SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TS
T ss_pred CHHHHHHHHHHhcCcEEccCCccceEEcccccccc-ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CC
Confidence 3899999999888877653 3344444433322 24467899999999999999999999999999999999986 79
Q ss_pred CcceEEEEEecCHHHHHHHHHhcCCCCCCCC-CCceEEEEe
Q psy3930 236 KLKGFAFVEFSTKEEAAKALELGLNPCPPDY-QSSILTTTS 275 (299)
Q Consensus 236 ~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~-~g~~l~v~~ 275 (299)
.++|||||+|.+.++|.+|++. +||..+.. .+++|.|..
T Consensus 134 ~~~g~afV~f~~~~~A~~A~~~-l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 134 LSRGCAFVTFTTRAMAQTAIKA-MHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp CEEEEEEEEESSHHHHHHHHHH-HTTSCCCTTCSSCCEEEE
T ss_pred CEEEEEEEEECCHHHHHHHHHH-hcCCcccCCCCCCeEEEe
Confidence 9999999999999999999999 88843322 258887765
No 22
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3e-17 Score=124.29 Aligned_cols=90 Identities=31% Similarity=0.439 Sum_probs=79.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeecc-CCCCCcceEEEEEecCHHHHHHHHHhcC-CCCCCCCCCce
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKF-KSTGKLKGFAFVEFSTKEEAAKALELGL-NPCPPDYQSSI 270 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~-~~~g~~kg~~fV~F~~~~~A~~Al~~~l-ng~~~~~~g~~ 270 (299)
....++|||+|||.++++++|+++|++||.|..|.++++ +.+|.++|||||+|.+.++|++|++. + || ..+.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~~~--~~~~g~~ 88 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA-LCHS--THLYGRR 88 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHH-HHTC--CBSSSCB
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHH-hccC--CeECCCE
Confidence 556789999999999999999999999999999999998 77899999999999999999999999 7 88 7788999
Q ss_pred EEEEeecccCCCCCC
Q psy3930 271 LTTTSRLSFGITPLG 285 (299)
Q Consensus 271 l~v~~k~~~~~~~r~ 285 (299)
|.|...........+
T Consensus 89 l~v~~a~~~~~~~~~ 103 (107)
T 2cph_A 89 LVLEWADSEVTVQSG 103 (107)
T ss_dssp CEEEECCCCCCCCCS
T ss_pred EEEEeCCCCCCCCCC
Confidence 988876554333333
No 23
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=124.05 Aligned_cols=92 Identities=24% Similarity=0.305 Sum_probs=78.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCC---CCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCce
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKS---TGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSI 270 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~---~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~ 270 (299)
...++|||+|||.++++++|+++|++||.|..|.++++.. +|.++|||||+|.+.++|++|++. +|| ..+.|+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQ-LQG--HTVDGHK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHH-STT--CEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHH-hCC--CeeCCeE
Confidence 3468999999999999999999999999999999998765 568999999999999999999999 998 7788999
Q ss_pred EEEEeecccCCCCCCCCC
Q psy3930 271 LTTTSRLSFGITPLGFES 288 (299)
Q Consensus 271 l~v~~k~~~~~~~r~~~~ 288 (299)
|.|........++.+..+
T Consensus 80 l~V~~a~~~~~~~~~~~s 97 (98)
T 2cpf_A 80 LEVRISERATKPASGPSS 97 (98)
T ss_dssp CEEECSSCSSCCCCCCCC
T ss_pred EEEEEccCCCCCCCCCCC
Confidence 988876655444444333
No 24
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.9e-17 Score=123.28 Aligned_cols=84 Identities=23% Similarity=0.404 Sum_probs=77.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.++++..+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 88 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI-MDM--IKLYGKPIR 88 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHH-SSS--CBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHH-hCC--CeECCeEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999 898 778899998
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|......
T Consensus 89 v~~a~~~ 95 (105)
T 1x5u_A 89 VNKASAH 95 (105)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 8875443
No 25
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=2.2e-17 Score=124.89 Aligned_cols=85 Identities=22% Similarity=0.377 Sum_probs=75.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCC---CC
Q psy3930 192 PDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDY---QS 268 (299)
Q Consensus 192 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~---~g 268 (299)
.....++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+ .+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~~~~g 85 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA-LHE--QKTLPGMN 85 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHH-HTT--TCCCTTCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH-hcC--CcccCCCC
Confidence 355678999999999999999999999999999999999988899999999999999999999999 887 444 78
Q ss_pred ceEEEEeeccc
Q psy3930 269 SILTTTSRLSF 279 (299)
Q Consensus 269 ~~l~v~~k~~~ 279 (299)
++|.|......
T Consensus 86 ~~l~v~~a~~~ 96 (106)
T 2dgp_A 86 RPIQVKPADSE 96 (106)
T ss_dssp SCCEEEECCCC
T ss_pred ceEEEEECCcc
Confidence 99888775544
No 26
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=2.4e-17 Score=126.65 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=79.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 98 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS-MNG--FQIGMKRLK 98 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH-HTT--CEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHH-cCC--CEECCEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999 888 778899998
Q ss_pred EEeecccCCCCC
Q psy3930 273 TTSRLSFGITPL 284 (299)
Q Consensus 273 v~~k~~~~~~~r 284 (299)
|.........+.
T Consensus 99 V~~a~~~~~~~~ 110 (115)
T 2cpz_A 99 VQLKRSKNDSKS 110 (115)
T ss_dssp EECCCCSCCCCC
T ss_pred EEEcCCCCcCCC
Confidence 887554433333
No 27
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-17 Score=123.07 Aligned_cols=83 Identities=30% Similarity=0.489 Sum_probs=76.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~ 88 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAG-VSG--FGYDHLILN 88 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHH-TTT--CEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHH-cCC--CeeCCcEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999 898 778899988
Q ss_pred EEeecc
Q psy3930 273 TTSRLS 278 (299)
Q Consensus 273 v~~k~~ 278 (299)
|.....
T Consensus 89 v~~a~~ 94 (103)
T 2cq0_A 89 VEWAKP 94 (103)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 876443
No 28
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.72 E-value=3e-17 Score=137.38 Aligned_cols=120 Identities=21% Similarity=0.292 Sum_probs=103.3
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccCC------------------CCCCCcEEEEecCCCC
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDK------------------PDVDECTIYVEKLPPE 207 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~------------------~~~~~~~l~V~nLp~~ 207 (299)
.|+.|.+ .++|.+|+ .+++..+.++.++|.++.+.... .....++|||+|||.+
T Consensus 54 afV~F~~-------~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 125 (198)
T 2yh0_A 54 AFLEFRS-------VDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNY 125 (198)
T ss_dssp EEEEESC-------SHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTT
T ss_pred EEEEeCC-------HHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCC
Confidence 4666766 79999999 89999999999999876543111 1245689999999999
Q ss_pred CCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 208 AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 208 ~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
+++++|+++|++||.|..|.++++..+|.++|||||+|.+.++|.+|++. +|| ..+.|+.|.|...
T Consensus 126 ~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~v~~a 191 (198)
T 2yh0_A 126 LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG-LNG--MQLGDKKLLVQRA 191 (198)
T ss_dssp CCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHH-HTT--CEETTEECEEEES
T ss_pred CCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHH-cCC--CEECCEEEEEEEC
Confidence 99999999999999999999999988999999999999999999999999 898 7778998877663
No 29
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.9e-17 Score=123.97 Aligned_cols=86 Identities=22% Similarity=0.346 Sum_probs=77.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCC------CCCCCC
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLN------PCPPDY 266 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~ln------g~~~~~ 266 (299)
....++|||+|||+++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +| | ..+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~~~~--~~~ 88 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAA-ASLEAEGGG--LKL 88 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHH-HCTTTTTCC--EES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHH-hccccccCC--cEE
Confidence 44578999999999999999999999999999999999988999999999999999999999999 77 7 788
Q ss_pred CCceEEEEeecccCC
Q psy3930 267 QSSILTTTSRLSFGI 281 (299)
Q Consensus 267 ~g~~l~v~~k~~~~~ 281 (299)
.|+.|.|........
T Consensus 89 ~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSCEEEEECCCCCCC
T ss_pred cCEEEEEEECCCCcc
Confidence 899998877655433
No 30
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=123.43 Aligned_cols=88 Identities=20% Similarity=0.362 Sum_probs=78.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceE-EEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVT-YVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~-~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
...++|||+|||+++++++|+++|++||.|. .|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~~~ 83 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK-ING--KPLPGATPA 83 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHT-TTT--SEESSCSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHH-HcC--CccCCCCcc
Confidence 4568999999999999999999999999999 999999988999999999999999999999999 998 778888866
Q ss_pred EEeecccCCCCC
Q psy3930 273 TTSRLSFGITPL 284 (299)
Q Consensus 273 v~~k~~~~~~~r 284 (299)
+.+++.|+.+.+
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 666777765544
No 31
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.6e-17 Score=122.08 Aligned_cols=87 Identities=25% Similarity=0.321 Sum_probs=77.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.++.+ +|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~ 86 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTE-MNG--RIVATKPLY 86 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHH-HTT--CBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHH-hCC--CEeCCcEEE
Confidence 456789999999999999999999999999999999987 899999999999999999999999 888 778999999
Q ss_pred EEeecccCCCCC
Q psy3930 273 TTSRLSFGITPL 284 (299)
Q Consensus 273 v~~k~~~~~~~r 284 (299)
|.........+.
T Consensus 87 V~~a~~~~~~~~ 98 (103)
T 2d9p_A 87 VALAQRKEERQS 98 (103)
T ss_dssp EEECSSCCCCCC
T ss_pred EEEecccccCCC
Confidence 988655544333
No 32
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=125.83 Aligned_cols=85 Identities=29% Similarity=0.360 Sum_probs=76.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCceE--------EEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCC
Q psy3930 192 PDVDECTIYVEKLPPEAEHDYIESVFSKYGKVT--------YVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCP 263 (299)
Q Consensus 192 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~--------~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~ 263 (299)
.....++|||+|||.++++++|+++|++||.|. .|.++.++.+|.++|||||+|.+.++|++|++. +||
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~-l~g-- 87 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEW-FDG-- 87 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHH-HTT--
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHH-cCC--
Confidence 356679999999999999999999999999999 699999988999999999999999999999999 898
Q ss_pred CCCCCceEEEEeeccc
Q psy3930 264 PDYQSSILTTTSRLSF 279 (299)
Q Consensus 264 ~~~~g~~l~v~~k~~~ 279 (299)
..+.|+.|.|......
T Consensus 88 ~~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 88 KDFQGSKLKVSLARKK 103 (113)
T ss_dssp CEETTEECEEECSSCC
T ss_pred CccCCCEEEEEECCCC
Confidence 7788999988775444
No 33
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.3e-17 Score=120.52 Aligned_cols=83 Identities=18% Similarity=0.310 Sum_probs=75.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++ +|| ..+.|+.|.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~--~~~--~~~~g~~l~ 82 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN--MHF--HDIMGKKVE 82 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH--HCC--CBSSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH--hCC--CEECCeEEE
Confidence 4557899999999999999999999999999999999998889999999999999999999997 477 778899998
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|......
T Consensus 83 V~~a~~~ 89 (99)
T 2dgs_A 83 VKRAEPR 89 (99)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 8775544
No 34
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=6.3e-17 Score=128.46 Aligned_cols=86 Identities=20% Similarity=0.266 Sum_probs=78.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|+.||.|..|.+++++.+|.++|||||+|.+.++|.+|++. +|| ..+.|+.|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 115 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAG-LNG--FNILNKRLK 115 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHH-TTT--EECSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH-hCC--CEECCeEEE
Confidence 45568999999999999999999999999999999999988899999999999999999999999 998 778899999
Q ss_pred EEeecccCC
Q psy3930 273 TTSRLSFGI 281 (299)
Q Consensus 273 v~~k~~~~~ 281 (299)
|........
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 987655433
No 35
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=6.2e-17 Score=121.87 Aligned_cols=83 Identities=25% Similarity=0.331 Sum_probs=75.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++|| |..|.+++++.+|.++|||||+|.+.++|++|+ . +|| ..+.|+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~-l~g--~~~~g~~l~ 86 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-T-YDG--ALLGDRSLR 86 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-G-GTT--CEETTEECE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-h-hCC--CeECCeEEE
Confidence 45578999999999999999999999997 999999999888999999999999999999999 7 898 788899998
Q ss_pred EEeecccC
Q psy3930 273 TTSRLSFG 280 (299)
Q Consensus 273 v~~k~~~~ 280 (299)
|.......
T Consensus 87 V~~a~~~~ 94 (103)
T 2dng_A 87 VDIAEGRK 94 (103)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 88755443
No 36
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.1e-17 Score=124.14 Aligned_cols=84 Identities=26% Similarity=0.451 Sum_probs=76.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~ 85 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN-MNE--SELFGRTIR 85 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHH-HTT--EEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH-hCC--CEECCcEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999 888 778899998
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|......
T Consensus 86 V~~a~~~ 92 (102)
T 2cqb_A 86 VNLAKPM 92 (102)
T ss_dssp EEECCCC
T ss_pred EEeCCCC
Confidence 8775444
No 37
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.71 E-value=2.5e-18 Score=145.80 Aligned_cols=126 Identities=13% Similarity=0.081 Sum_probs=97.2
Q ss_pred HHHHHhhhcCCCe-eee--------eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeeccc--C--------
Q psy3930 130 RFFSQLLQESPEI-EVS--------VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ--D-------- 190 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~l~--------~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~--~-------- 190 (299)
.-|..++..++.+ .+. .|+.| .+.++|..|++.+|+..+.++.++|..+.... +
T Consensus 20 ~~L~~~F~~~G~v~~v~i~~~~~g~afV~f-------~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~ 92 (205)
T 3tyt_A 20 DRVFNVFCLYGNVEKVKFMKSKPGAAMVEM-------ADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLED 92 (205)
T ss_dssp HHHHHHHTTTSCEEEEEECTTSTTCEEEEE-------SSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTT
T ss_pred HHHHHHHHhcCCeEEEEEecCCCCEEEEEE-------CCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCccccccc
Confidence 4577777777762 222 23333 45899999999999999999999988653110 0
Q ss_pred --------------C-----------CCCCCcEEEEecCCCCCCHHHHHHHhhcCCce--EEEEeeccCCCCCcceEEEE
Q psy3930 191 --------------K-----------PDVDECTIYVEKLPPEAEHDYIESVFSKYGKV--TYVSLPKFKSTGKLKGFAFV 243 (299)
Q Consensus 191 --------------~-----------~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i--~~v~i~~~~~~g~~kg~~fV 243 (299)
+ .....++|||+|||+++++++|+++|++||.| ..+++..+. |..+|+|||
T Consensus 93 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV 170 (205)
T 3tyt_A 93 GSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLL 170 (205)
T ss_dssp SCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEE
T ss_pred CCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEE
Confidence 0 01235689999999999999999999999998 899988764 556799999
Q ss_pred EecCHHHHHHHHHhcCCCCCCC
Q psy3930 244 EFSTKEEAAKALELGLNPCPPD 265 (299)
Q Consensus 244 ~F~~~~~A~~Al~~~lng~~~~ 265 (299)
+|.+.++|.+|+.. |||..+.
T Consensus 171 ~f~~~~~A~~Ai~~-lng~~~~ 191 (205)
T 3tyt_A 171 EWDSKSDALETLGF-LNHYQMK 191 (205)
T ss_dssp ECSSHHHHHHHHHH-HTTCEEC
T ss_pred EeCCHHHHHHHHHH-hCCCCcc
Confidence 99999999999999 9984433
No 38
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-17 Score=123.85 Aligned_cols=82 Identities=24% Similarity=0.381 Sum_probs=75.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++|+++|+++|++||+|..|++++++. |.++|||||+|.+.++|++|+. +|| ..++|+.|.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~--~~~--~~~~gr~l~ 82 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE--TPG--QKYKETDLL 82 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT--SSC--CCCTTTTCE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH--cCC--CEECCEEEE
Confidence 44568999999999999999999999999999999999985 9999999999999999999998 577 788999999
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|..+.++
T Consensus 83 V~~~~~~ 89 (103)
T 1s79_A 83 ILFKDDY 89 (103)
T ss_dssp EEEHHHH
T ss_pred EEEchHH
Confidence 9987664
No 39
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.71 E-value=1.4e-16 Score=122.31 Aligned_cols=84 Identities=24% Similarity=0.382 Sum_probs=77.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 88 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ-MGG--QWLGGRQIR 88 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-TTT--CEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHH-hCC--CEECCEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999 898 778899998
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|......
T Consensus 89 V~~a~~~ 95 (115)
T 2dgo_A 89 TNWATRK 95 (115)
T ss_dssp EEESSCC
T ss_pred EEEccCC
Confidence 8876544
No 40
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=1e-17 Score=123.06 Aligned_cols=80 Identities=16% Similarity=0.293 Sum_probs=70.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCC--ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYG--KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G--~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
.+|||+|||.++++++|+++|++|| .|..|++++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~-l~g--~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL-LPK--RELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHH-GGG--SCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHH-cCC--CeeCCEEEEEE
Confidence 5799999999999999999999999 999999999988999999999999999999999999 898 78899999887
Q ss_pred eeccc
Q psy3930 275 SRLSF 279 (299)
Q Consensus 275 ~k~~~ 279 (299)
.....
T Consensus 79 ~~~~~ 83 (90)
T 3p5t_L 79 PSNKL 83 (90)
T ss_dssp CC---
T ss_pred ECCCC
Confidence 65443
No 41
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.1e-17 Score=122.11 Aligned_cols=84 Identities=23% Similarity=0.341 Sum_probs=75.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCC-CCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKST-GKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~-g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
....++|||+|||.++++++|+++|++|| |..|.++++..+ |.++|||||+|.+.++|++|+ . +|| ..+.|+.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~-l~g--~~~~g~~l 86 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-S-LNE--ESLGNKRI 86 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-G-GGT--CEETTEEC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-h-cCC--CEeCCcEE
Confidence 34568999999999999999999999999 999999999877 999999999999999999999 7 888 77889999
Q ss_pred EEEeecccCC
Q psy3930 272 TTTSRLSFGI 281 (299)
Q Consensus 272 ~v~~k~~~~~ 281 (299)
.|........
T Consensus 87 ~V~~a~~~~~ 96 (104)
T 1wi8_A 87 RVDVADQAQD 96 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 8887655433
No 42
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=5.4e-17 Score=126.67 Aligned_cols=85 Identities=29% Similarity=0.454 Sum_probs=78.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.++.+..+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 95 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG-LNG--QDLMGQPIS 95 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHH-HTT--CBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH-hCC--CeeCCeEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999 898 778999999
Q ss_pred EEeecccC
Q psy3930 273 TTSRLSFG 280 (299)
Q Consensus 273 v~~k~~~~ 280 (299)
|.......
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 98765543
No 43
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=123.78 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=72.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCc--eEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCC--CCCCCc
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGK--VTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCP--PDYQSS 269 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~--i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~--~~~~g~ 269 (299)
..-.||||+|||+++|+++|+++|++||. +..|++++|+.+|.++|||||+|.+.++|++|++. +||.. +.++|+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~-lng~~~~~~i~Gr 85 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQI-LQSLHPPLKIDGK 85 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHH-HHSSSSCEEETTE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHH-hcCCCCCceECCE
Confidence 34579999999999999999999999995 67899999998999999999999999999999999 88742 347899
Q ss_pred eEEEEee
Q psy3930 270 ILTTTSR 276 (299)
Q Consensus 270 ~l~v~~k 276 (299)
+|.|...
T Consensus 86 ~i~V~~A 92 (95)
T 2lkz_A 86 TIGVDFA 92 (95)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 9887653
No 44
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.70 E-value=1.6e-16 Score=119.88 Aligned_cols=83 Identities=22% Similarity=0.293 Sum_probs=74.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCC---c
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQS---S 269 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g---~ 269 (299)
....++|||+|||.++++++|+++|++||.|..|.++++. +|.++|||||+|.+.++|++|++. +|| ..+.+ +
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~-l~g--~~~~gg~~~ 87 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHA-LHG--SQTMPGASS 87 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHH-HSS--CCCCTTCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHH-HcC--CccCCCCCc
Confidence 4557899999999999999999999999999999999988 899999999999999999999999 888 56666 8
Q ss_pred eEEEEeeccc
Q psy3930 270 ILTTTSRLSF 279 (299)
Q Consensus 270 ~l~v~~k~~~ 279 (299)
.|.|......
T Consensus 88 ~l~V~~a~~~ 97 (105)
T 2dnh_A 88 SLVVKFADTD 97 (105)
T ss_dssp CCEEEESCSS
T ss_pred cEEEEECccC
Confidence 8888764433
No 45
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.70 E-value=1.3e-17 Score=147.79 Aligned_cols=120 Identities=24% Similarity=0.225 Sum_probs=104.9
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccCCC-CCCCcEEEEecCCCCC-CHHHHHHHhhcCCce
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP-DVDECTIYVEKLPPEA-EHDYIESVFSKYGKV 223 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~-~~~~~~l~V~nLp~~~-t~e~L~~~F~~~G~i 223 (299)
.|+.|.+ .++|.+|+..+++..+.++.+.|.++.+..... ....++|||+|||+++ ++++|+++|+.||.|
T Consensus 140 afV~f~~-------~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i 212 (284)
T 3smz_A 140 GFAEYMK-------KDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSP 212 (284)
T ss_dssp EEEEESS-------HHHHHHHHHHHTTCEETTEECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCC
T ss_pred EEEEECC-------HHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCe
Confidence 4566655 899999999999999999999999877654332 4567899999999995 999999999999999
Q ss_pred EEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 224 TYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 224 ~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
..|.++++. +|.++|+|||+|.+.++|.+|+.. +|| ..+.|++|.|...
T Consensus 213 ~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~v~~a 261 (284)
T 3smz_A 213 TFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQ-ADG--LSLGGSHLRVSFC 261 (284)
T ss_dssp SEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHH-HTT--CEETTEECEEEEC
T ss_pred EEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHH-hCC--CccCCeEEEEEEe
Confidence 999999987 899999999999999999999999 898 7778998887764
No 46
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=122.65 Aligned_cols=82 Identities=23% Similarity=0.356 Sum_probs=75.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||.++++++|+++|++||.|..|.++.+. +|.++|||||+|.+.++|++|++. +|| ..+.|+.|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~-l~g--~~~~g~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD-MNG--KSLHGKAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHH-CSS--CBCSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHH-hCC--CEECCEEEEE
Confidence 346899999999999999999999999999999999998 999999999999999999999999 998 7789999999
Q ss_pred Eeeccc
Q psy3930 274 TSRLSF 279 (299)
Q Consensus 274 ~~k~~~ 279 (299)
......
T Consensus 81 ~~a~~~ 86 (116)
T 2fy1_A 81 EQAKKP 86 (116)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 876443
No 47
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=120.11 Aligned_cols=81 Identities=22% Similarity=0.323 Sum_probs=73.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhc-CCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCC-CCCce
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSK-YGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPD-YQSSI 270 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~-~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~-~~g~~ 270 (299)
....++|||+|||+++++++|+++|++ ||.|..|.++++. +|.++|||||+|.+.++|.+|++. +|| .. +.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~~g~~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTE-CQG--AVGLGSKP 81 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHH-TTT--CCSSSSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHH-ccC--CcccCCEe
Confidence 345689999999999999999999999 9999999999998 999999999999999999999999 898 66 88998
Q ss_pred EEEEeec
Q psy3930 271 LTTTSRL 277 (299)
Q Consensus 271 l~v~~k~ 277 (299)
|.|....
T Consensus 82 l~v~~a~ 88 (104)
T 2dhg_A 82 VRLSVAI 88 (104)
T ss_dssp CCCCBCC
T ss_pred EEEEEcc
Confidence 8766543
No 48
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=2.4e-17 Score=123.67 Aligned_cols=79 Identities=29% Similarity=0.367 Sum_probs=73.8
Q ss_pred CCcEEEEecCCC------CCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCC
Q psy3930 195 DECTIYVEKLPP------EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQS 268 (299)
Q Consensus 195 ~~~~l~V~nLp~------~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g 268 (299)
.+++|||+|||. ++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~-lng--~~~~g 81 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKS-FHG--KRLDL 81 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH-HTT--CBSSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH-hCC--cccCC
Confidence 368999999999 999999999999999999999999998899999999999999999999999 899 77888
Q ss_pred -ceEEEEee
Q psy3930 269 -SILTTTSR 276 (299)
Q Consensus 269 -~~l~v~~k 276 (299)
+.|.|...
T Consensus 82 ~r~l~V~~a 90 (100)
T 3ns6_A 82 KHRLFLYTM 90 (100)
T ss_dssp SCBCEEEES
T ss_pred CeEEEEEEC
Confidence 99988764
No 49
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.70 E-value=3.9e-17 Score=131.47 Aligned_cols=108 Identities=21% Similarity=0.285 Sum_probs=91.7
Q ss_pred CHHHHHHHHHhc-Cccccccccceeeeeecc--------------cCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCce
Q psy3930 159 DPDDVVKALRKS-KLLEVTEDGTKVRRTVVV--------------QDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKV 223 (299)
Q Consensus 159 ~~~~a~~Al~~~-~~~~~~~~~~~v~r~~~~--------------~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i 223 (299)
+.++|++|++.+ ++..+.+ .+.+..+.+. ........++|||+|||+++++++|+++|++||.|
T Consensus 22 ~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i 100 (150)
T 2i2y_A 22 DAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPL 100 (150)
T ss_dssp SHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCE
T ss_pred CHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCE
Confidence 378999999998 8988988 7777654431 12224567899999999999999999999999999
Q ss_pred EEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 224 TYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 224 ~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
..|+++++ ++|||||+|.+.++|.+|+.. +|| ..+.|++|.|..
T Consensus 101 ~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~v~~ 144 (150)
T 2i2y_A 101 RSVWVARN-----PPGFAFVEFEDPRDAADAVRE-LDG--RTLCGCRVRVEL 144 (150)
T ss_dssp EEEEECSS-----SCSEEEEEESSHHHHHHHHHH-HSS--SCSSSSCCEEEE
T ss_pred EEEEEeeC-----CCcEEEEEECCHHHHHHHHHH-cCC--CEECCeEEEEEE
Confidence 99999876 478999999999999999999 898 778899987765
No 50
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=1e-16 Score=115.61 Aligned_cols=77 Identities=17% Similarity=0.337 Sum_probs=71.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
++|||+|||+++++++|+++|++||.|..+.++++..+|.++|||||+|.+.++|++|++. +|| ..+.|++|.|...
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~-l~g--~~~~g~~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDS-MQG--QDLNGRPLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH-HTT--CEETTEECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHH-hcC--CeeCCcEEEEEec
Confidence 6899999999999999999999999999999999988999999999999999999999999 898 6778999877653
No 51
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=120.64 Aligned_cols=83 Identities=29% Similarity=0.452 Sum_probs=76.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
...+++|||+|||.++++++|+++|++||.|..|.++++..+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 96 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEG-LNG--QDLMGQPIS 96 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHH-HTT--CBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHH-hcC--CEECCcEEE
Confidence 45578999999999999999999999999999999999988999999999999999999999999 898 778899998
Q ss_pred EEeecc
Q psy3930 273 TTSRLS 278 (299)
Q Consensus 273 v~~k~~ 278 (299)
|.....
T Consensus 97 V~~a~~ 102 (106)
T 1p27_B 97 VDWCFV 102 (106)
T ss_dssp EEESEE
T ss_pred EEeecC
Confidence 877443
No 52
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=6.2e-17 Score=117.30 Aligned_cols=79 Identities=28% Similarity=0.483 Sum_probs=73.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||+++++++|+++|++||.|..|.++++..+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~v 81 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN-MNE--SELFGRTIRV 81 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH-HTT--CEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHH-hCC--CEECCcEEEE
Confidence 4568999999999999999999999999999999999988999999999999999999999998 898 7788999887
Q ss_pred Ee
Q psy3930 274 TS 275 (299)
Q Consensus 274 ~~ 275 (299)
..
T Consensus 82 ~~ 83 (85)
T 3mdf_A 82 NL 83 (85)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 53
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-18 Score=133.79 Aligned_cols=99 Identities=21% Similarity=0.277 Sum_probs=83.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEE--------EEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCC
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTY--------VSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPP 264 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~--------v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~ 264 (299)
....++|||+|||.++++++|+++|++||.|.. |.+++++.+|.++|||||+|.+.++|++|++. +|| .
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~-l~g--~ 80 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW-FDG--K 80 (116)
Confidence 345689999999999999999999999999998 89999877899999999999999999999999 898 7
Q ss_pred CCCCceEEEEeecccCCCCCCCCCCCCccc
Q psy3930 265 DYQSSILTTTSRLSFGITPLGFESGGWWFK 294 (299)
Q Consensus 265 ~~~g~~l~v~~k~~~~~~~r~~~~g~~~~~ 294 (299)
.+.|+.|.|..........++.+.|+..|.
T Consensus 81 ~~~g~~l~V~~a~~~~~~~~ggg~~~~~~~ 110 (116)
T 2lcw_A 81 EFSGNPIKVSFATRRADFNRGGGNGRGGLE 110 (116)
Confidence 788999998876655454455444444443
No 54
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.69 E-value=1.2e-17 Score=148.54 Aligned_cols=120 Identities=14% Similarity=0.266 Sum_probs=100.9
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccCC-----CCCCCcEEEEecCCCC-CCHHHHHHHhhc
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDK-----PDVDECTIYVEKLPPE-AEHDYIESVFSK 219 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~-----~~~~~~~l~V~nLp~~-~t~e~L~~~F~~ 219 (299)
.|+.|.+ .++|.+|+..+++..+.+..+.|.++.+.... .....++|||+|||++ +++++|+++|++
T Consensus 162 afV~f~~-------~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~ 234 (292)
T 2ghp_A 162 AYIDVTS-------KEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEG 234 (292)
T ss_dssp EEEECSS-------HHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGG
T ss_pred EEEEECC-------HHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhc
Confidence 4666655 89999999999999999999999887654322 2346789999999999 999999999999
Q ss_pred CCceEEEEeeccCC-CCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 220 YGKVTYVSLPKFKS-TGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 220 ~G~i~~v~i~~~~~-~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
||.|..|+++++.. ||.++|||||+|.+.++|.+|+ . +|| ..+.|+.|.|...
T Consensus 235 ~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~-l~g--~~~~g~~i~V~~a 288 (292)
T 2ghp_A 235 FGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q-MNR--SLLGNREISVSLA 288 (292)
T ss_dssp GSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G-GTT--EEETTEEEEEEEC
T ss_pred cCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H-hcC--CEECCcEEEEEEe
Confidence 99999999999874 4999999999999999999999 8 998 7788999887663
No 55
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.69 E-value=9.6e-17 Score=116.80 Aligned_cols=80 Identities=25% Similarity=0.389 Sum_probs=73.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ-MGG--QWLGGRQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-HTT--CEETTEECEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHH-cCC--CEECCeEEEE
Confidence 3468999999999999999999999999999999999988999999999999999999999999 888 7788999888
Q ss_pred Eee
Q psy3930 274 TSR 276 (299)
Q Consensus 274 ~~k 276 (299)
...
T Consensus 81 ~~a 83 (87)
T 3bs9_A 81 NWA 83 (87)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
No 56
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.69 E-value=8.8e-17 Score=132.06 Aligned_cols=115 Identities=22% Similarity=0.282 Sum_probs=101.2
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceE
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVT 224 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~ 224 (299)
-.|+.|.+ .++|.+|+ .+++..+.++.++|.++.+.........++|||+|||.++++++|+++|++||.|.
T Consensus 56 ~afV~f~~-------~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~ 127 (175)
T 1fje_B 56 FGYVDFES-------AEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIR 127 (175)
T ss_dssp EEEEEESS-------HHHHHHHH-HGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEE
T ss_pred EEEEEECC-------HHHHHHHH-hcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEE
Confidence 45788876 79999999 59999999999999988776666667789999999999999999999999999887
Q ss_pred EEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 225 YVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 225 ~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
.+ ..+|.++|||||+|.+.++|.+|++. +|| ..+.|+.|.|..
T Consensus 128 ~~-----~~~~~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~i~v~~ 170 (175)
T 1fje_B 128 LV-----SQDGKSKGIAYIEFKSEADAEKNLEE-KQG--AEIDGRSVSLYY 170 (175)
T ss_dssp EE-----CSSSSCCSEEEEECSSHHHHHHHHHH-HTE--EEETTEEEEEEE
T ss_pred Ee-----cCCCCCceEEEEEECCHHHHHHHHHH-hCC--CEECCeEEEEEe
Confidence 76 34888999999999999999999999 898 778899887765
No 57
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.69 E-value=6.3e-17 Score=143.41 Aligned_cols=111 Identities=20% Similarity=0.239 Sum_probs=99.4
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCc
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~ 237 (299)
.+.++|.+|+..+++..+.++.+.+.... ..++|||+|||+++++++|+++|++||.|..+.++++..+|.+
T Consensus 65 ~~~~~A~~A~~~l~~~~~~g~~i~v~~~~--------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~ 136 (284)
T 3smz_A 65 LNGEQAEAAINAFHQSRLRERELSVQLQP--------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQS 136 (284)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECC--------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred CCHHHHHHHHHHcCCCeeCCeEEEEEecC--------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCcc
Confidence 45899999999999999999998887632 3579999999999999999999999999999999999889999
Q ss_pred ceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeeccc
Q psy3930 238 KGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLSF 279 (299)
Q Consensus 238 kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~~~ 279 (299)
+|||||+|.+.++|.+|+.. +|| ..+.|+.|.|......
T Consensus 137 ~g~afV~f~~~~~a~~A~~~-l~~--~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 137 KGYGFAEYMKKDSAARAKSD-LLG--KPLGPRTLYVHWTDAG 175 (284)
T ss_dssp EEEEEEEESSHHHHHHHHHH-HTT--CEETTEECEEEECCGG
T ss_pred ceEEEEEECCHHHHHHHHHH-hCC--CEeCCcEEEEEECCCC
Confidence 99999999999999999998 888 7788999988765443
No 58
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.69 E-value=1.9e-17 Score=145.36 Aligned_cols=109 Identities=20% Similarity=0.214 Sum_probs=94.1
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLK 238 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~k 238 (299)
+.++|..|+..+++..+.++.++|..+. .+++|||+|||+.+++++|+++|+.||.|..|.++++. +|.++
T Consensus 67 ~~~~A~~A~~~l~g~~i~g~~l~v~~a~--------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~ 137 (261)
T 3sde_A 67 SRTLAEIAKAELDGTILKSRPLRIRFAT--------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRAT 137 (261)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECC--------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEE
T ss_pred CHHHHHHHHHHcCCcEECCceeEeeecc--------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcC
Confidence 3899999999999999999999988764 25799999999999999999999999999999999995 99999
Q ss_pred eEEEEEecCHHHHHHHHHhcC-CCCC-CCCCCceEEEEeec
Q psy3930 239 GFAFVEFSTKEEAAKALELGL-NPCP-PDYQSSILTTTSRL 277 (299)
Q Consensus 239 g~~fV~F~~~~~A~~Al~~~l-ng~~-~~~~g~~l~v~~k~ 277 (299)
|||||+|.+.++|.+|+.. + +|.. ....++++.|....
T Consensus 138 g~afV~f~~~~~A~~A~~~-l~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 138 GKGFVEFAAKPPARKALER-CGDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp EEEEEEESSHHHHHHHHHH-HHHSCEESSSSCCBCEEEECC
T ss_pred cEEEEEeCCHHHHHHHHHH-hcCCeEEecCCCceEEEeecc
Confidence 9999999999999999999 5 4421 22347888887643
No 59
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=118.80 Aligned_cols=80 Identities=24% Similarity=0.382 Sum_probs=74.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEE--------EEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCC
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTY--------VSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPP 264 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~--------v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~ 264 (299)
....++|||+|||.++++++|+++|++||.|.. |++++++.+|.++|||||+|.+.++|++|++. +|| .
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~-l~g--~ 86 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW-FDG--K 86 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH-HTT--C
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH-hCC--C
Confidence 556789999999999999999999999999999 99999988999999999999999999999999 898 7
Q ss_pred CCCCceEEEEe
Q psy3930 265 DYQSSILTTTS 275 (299)
Q Consensus 265 ~~~g~~l~v~~ 275 (299)
.+.|+.|.|..
T Consensus 87 ~~~g~~l~V~~ 97 (99)
T 2la6_A 87 EFSGNPIKVSF 97 (99)
T ss_dssp BSSSSBCEEEE
T ss_pred EeCCcEEEEEe
Confidence 78899998865
No 60
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-16 Score=120.41 Aligned_cols=85 Identities=33% Similarity=0.429 Sum_probs=73.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.++. ++.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~ 92 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYG-RDG--YDYDGYRLR 92 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHH-HTT--CEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHH-cCC--CEECCeEEE
Confidence 45678999999999999999999999999999999965 455789999999999999999999 888 778899988
Q ss_pred EEeecccCCCC
Q psy3930 273 TTSRLSFGITP 283 (299)
Q Consensus 273 v~~k~~~~~~~ 283 (299)
|........++
T Consensus 93 V~~a~~~~~~~ 103 (109)
T 1x4a_A 93 VEFPRSGRGTG 103 (109)
T ss_dssp EECCCCCCCCC
T ss_pred EEEcccCCCCC
Confidence 87755543333
No 61
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.68 E-value=6.4e-17 Score=128.03 Aligned_cols=114 Identities=20% Similarity=0.239 Sum_probs=78.1
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLK 238 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~k 238 (299)
|...+..|+.++++-...+... ..... +.......++|||+|||.++++++|+++|++||.|..|.+++++.+|.++
T Consensus 13 ~~~~~~~a~~~~~g~~~~g~~~-~~~~~--~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~ 89 (135)
T 2lea_A 13 GLVPRGSHMASMTGGQQMGRGS-MSYGR--PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESR 89 (135)
T ss_dssp -----------------------CCSCC--SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCC
T ss_pred CCCchhhhhhhccCCCCCCCCC-CCcCC--CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccc
Confidence 4556677887777655444332 11212 22234557899999999999999999999999999999999998899999
Q ss_pred eEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEeecc
Q psy3930 239 GFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLS 278 (299)
Q Consensus 239 g~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k~~ 278 (299)
|||||+|.+.++|++|++. +|| ..+.|+.|.|.....
T Consensus 90 G~afV~F~~~~~A~~Ai~~-l~g--~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 90 GFAFVRFHDKRDAEDAMDA-MDG--AVLDGRELRVQMARY 126 (135)
T ss_dssp SCCEEECSCHHHHHHHHTT-TTT--CCSSSSCCEEEECCC
T ss_pred eEEEEEECCHHHHHHHHHH-cCC--CEECCEEEEEEECCC
Confidence 9999999999999999999 898 778899998877543
No 62
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=117.76 Aligned_cols=80 Identities=20% Similarity=0.410 Sum_probs=74.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.++.+. +|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMK-MDG--MTIKENIIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH-HTT--EESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHH-hCC--CEECCEEEE
Confidence 4567899999999999999999999999999999999998 999999999999999999999999 888 778899988
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
|...
T Consensus 90 v~~a 93 (100)
T 2do4_A 90 VAIS 93 (100)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7663
No 63
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.68 E-value=1.1e-16 Score=123.21 Aligned_cols=77 Identities=21% Similarity=0.320 Sum_probs=70.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
..+|||+|||+++++++|+++|++||.|..|+++++. +.++|||||+|.+.++|++|++. +|| ..+.|+.|.|..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~-l~~--~~~~g~~i~V~~ 79 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEK-MNG--MLLNDRKVFVGR 79 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHH-HTT--CEETTEECEEEE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHH-cCC--CEECCEEEEEEE
Confidence 4689999999999999999999999999999999985 45799999999999999999999 898 788899998876
Q ss_pred ec
Q psy3930 276 RL 277 (299)
Q Consensus 276 k~ 277 (299)
..
T Consensus 80 a~ 81 (115)
T 4f25_A 80 FK 81 (115)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 64
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=7.6e-17 Score=121.76 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=74.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. || ..+.|+.|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~--~~--~~~~g~~l~ 88 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS--RP--HTLDGRNID 88 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH--CS--EEETTEEEB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh--CC--CeECCEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999997 76 778899887
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|......
T Consensus 89 V~~a~~~ 95 (105)
T 2dh8_A 89 PKPCTPR 95 (105)
T ss_dssp CCCSCCS
T ss_pred EEEccCC
Confidence 7654444
No 65
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=1.8e-16 Score=120.74 Aligned_cols=83 Identities=28% Similarity=0.437 Sum_probs=76.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.++.+..+|.++|||||+|.+.++|++|+.. +|| ..+.|+.|.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~-l~g--~~~~g~~l~ 99 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA-LNG--AEIMGQTIQ 99 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHH-HTT--CEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHH-cCC--CEECCcEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999 898 778899988
Q ss_pred EEeecc
Q psy3930 273 TTSRLS 278 (299)
Q Consensus 273 v~~k~~ 278 (299)
|.....
T Consensus 100 V~~a~~ 105 (110)
T 1oo0_B 100 VDWCFV 105 (110)
T ss_dssp EEESEE
T ss_pred EEEccc
Confidence 876443
No 66
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.3e-16 Score=130.56 Aligned_cols=84 Identities=27% Similarity=0.419 Sum_probs=76.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+.+++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.++|++|+.. +|| ..+.|++|.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~-l~g--~~~~g~~l~ 145 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEA-LNG--AEIMGQTIQ 145 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHH-HTT--CEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHH-hCC--CEECCEEEE
Confidence 45568899999999999999999999999999999999988999999999999999999999999 898 778899998
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|......
T Consensus 146 V~~a~~~ 152 (165)
T 1rk8_A 146 VDWCFVK 152 (165)
T ss_dssp EEESEEC
T ss_pred EEEecCC
Confidence 8775544
No 67
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.68 E-value=1.8e-16 Score=117.74 Aligned_cols=78 Identities=27% Similarity=0.377 Sum_probs=73.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
.++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..++|+.|.|..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~-l~g--~~~~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN-LNG--YQLGSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHH-HTT--CEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH-hCC--CeECCeEEEEEE
Confidence 57999999999999999999999999999999999988899999999999999999999999 898 778898887776
Q ss_pred e
Q psy3930 276 R 276 (299)
Q Consensus 276 k 276 (299)
.
T Consensus 79 a 79 (96)
T 2x1f_A 79 S 79 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 68
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.8e-16 Score=116.87 Aligned_cols=84 Identities=19% Similarity=0.277 Sum_probs=74.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.++++.. .++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 86 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREK-LHG--TVVEGRKIE 86 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHH-HTT--CEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHH-hCC--CEECCEEEE
Confidence 45678999999999999999999999999999999998852 3899999999999999999999 888 778899998
Q ss_pred EEeecccCC
Q psy3930 273 TTSRLSFGI 281 (299)
Q Consensus 273 v~~k~~~~~ 281 (299)
|........
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cq3_A 87 VNNATARVM 95 (103)
T ss_dssp EEECCSSCC
T ss_pred EEEcccCCC
Confidence 887555433
No 69
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.4e-16 Score=117.13 Aligned_cols=87 Identities=23% Similarity=0.240 Sum_probs=76.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|+.. + ..+.|+.|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~---~--~~~~g~~l~ 86 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ---R--HMIDGRWCD 86 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS---C--EEETTEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc---C--CeeCCeEEE
Confidence 45578999999999999999999999999999999999988899999999999999999999985 3 467899998
Q ss_pred EEeecccCCCCC
Q psy3930 273 TTSRLSFGITPL 284 (299)
Q Consensus 273 v~~k~~~~~~~r 284 (299)
|........+.+
T Consensus 87 v~~a~~~~~~~~ 98 (103)
T 2cqg_A 87 CKLPNSKQSQDS 98 (103)
T ss_dssp EECCCTTCCCCC
T ss_pred EEecCCCCcCCC
Confidence 887665544443
No 70
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.7e-16 Score=118.33 Aligned_cols=79 Identities=23% Similarity=0.250 Sum_probs=70.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.+ .|.+++++ +|+++|||||+|.+.++|++|+ . +|+ ..+.++.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~-~~~--~~~~gr~i~ 85 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-A-KDK--ANMQHRYVE 85 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-T-TSS--CCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-H-hCC--CeECCcEEE
Confidence 3456899999999999999999999999954 99999998 9999999999999999999999 4 687 788899988
Q ss_pred EEeec
Q psy3930 273 TTSRL 277 (299)
Q Consensus 273 v~~k~ 277 (299)
|....
T Consensus 86 V~~~~ 90 (102)
T 1wez_A 86 LFLNS 90 (102)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 87644
No 71
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=99.67 E-value=9.9e-18 Score=122.24 Aligned_cols=82 Identities=29% Similarity=0.475 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhhhhcCCCCcchhHHHHHhhh--cCCCeeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeee
Q psy3930 107 KQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ--ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRR 184 (299)
Q Consensus 107 ~~~~~~i~~q~efyfsd~nL~~d~fl~~~~~--~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r 184 (299)
+++...|++|+||||||+||++|.||+.+|. ..||++++++++|++|+.++.+.+.+.+|++.+..+++++++.+|+|
T Consensus 8 ~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg~~VRR 87 (92)
T 1s29_A 8 SENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGLMVRR 87 (92)
T ss_dssp HHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSSEEEE
T ss_pred HHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCCCEEeC
Confidence 6778999999999999999999999999995 57899999999999999999999999999999999999999999999
Q ss_pred eecc
Q psy3930 185 TVVV 188 (299)
Q Consensus 185 ~~~~ 188 (299)
..|.
T Consensus 88 ~~Pl 91 (92)
T 1s29_A 88 RDPL 91 (92)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8764
No 72
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=119.67 Aligned_cols=81 Identities=27% Similarity=0.434 Sum_probs=75.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~-l~g--~~i~g~~l~ 99 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ-LNG--FELAGRPMK 99 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHH-HTT--CCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHH-cCC--CEECCEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999 898 788899998
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
|...
T Consensus 100 V~~a 103 (108)
T 2jrs_A 100 VGHV 103 (108)
T ss_dssp EECS
T ss_pred EEEc
Confidence 7653
No 73
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.7e-16 Score=119.56 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=76.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 192 PDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 192 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
.....++|||+|||.++++++|+++|++||.|..|++++++.+|.++|||||+|.+.++|++|++. +|+ .+.|+.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~---~~~g~~l 88 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD-PNP---IIDGRKA 88 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTC-SSC---EETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHh-CCC---cCCCEEE
Confidence 356679999999999999999999999999999999999988999999999999999999999998 785 4789999
Q ss_pred EEEeeccc
Q psy3930 272 TTTSRLSF 279 (299)
Q Consensus 272 ~v~~k~~~ 279 (299)
.|......
T Consensus 89 ~V~~a~~~ 96 (116)
T 2cqd_A 89 NVNLAYLG 96 (116)
T ss_dssp EEEESTTT
T ss_pred EEEEcccC
Confidence 99886544
No 74
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.67 E-value=1.1e-16 Score=141.69 Aligned_cols=73 Identities=19% Similarity=0.314 Sum_probs=65.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCC-CceEEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQ-SSILTT 273 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~-g~~l~v 273 (299)
..++|||+|||.++++++|+++|++||.|..|+++.++ +|||||+|.+.++|.+|++. +|| ..+. |+.|.|
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~-l~g--~~~~~g~~l~v 277 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDA-LQG--FKITQNNAMKI 277 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHH-cCC--cEeCCCCEEEE
Confidence 45789999999999999999999999999999998654 57999999999999999999 998 6676 888877
Q ss_pred Ee
Q psy3930 274 TS 275 (299)
Q Consensus 274 ~~ 275 (299)
..
T Consensus 278 ~~ 279 (282)
T 3pgw_A 278 SF 279 (282)
T ss_pred EE
Confidence 65
No 75
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=8.8e-17 Score=120.77 Aligned_cols=82 Identities=11% Similarity=0.125 Sum_probs=71.2
Q ss_pred CCCcEEEEecCCC-CCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 194 VDECTIYVEKLPP-EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 194 ~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
...++|||+|||+ ++++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|++. +||....+.|++|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~-l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDY-YTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHH-HHHSCCEETTEECE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHH-HcCCCceECCcEEE
Confidence 3568999999999 9999999999999999999999875 47999999999999999999 77755678999998
Q ss_pred EEeecccCCC
Q psy3930 273 TTSRLSFGIT 282 (299)
Q Consensus 273 v~~k~~~~~~ 282 (299)
|.....+...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 1x4d_A 86 VHLSQKYKRI 95 (102)
T ss_dssp EEEECCCTTS
T ss_pred EEECCCCCCC
Confidence 8876554333
No 76
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.3e-16 Score=116.54 Aligned_cols=80 Identities=31% Similarity=0.465 Sum_probs=74.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|++|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~ 89 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA-INN--KQLFGRVIK 89 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHH-TTT--EEETTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHH-cCC--CeeCCcEEE
Confidence 45578999999999999999999999999999999999988899999999999999999999999 898 778899998
Q ss_pred EEe
Q psy3930 273 TTS 275 (299)
Q Consensus 273 v~~ 275 (299)
|..
T Consensus 90 v~~ 92 (94)
T 2e5h_A 90 ASI 92 (94)
T ss_dssp EEE
T ss_pred EEe
Confidence 865
No 77
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=3.3e-16 Score=115.24 Aligned_cols=79 Identities=24% Similarity=0.428 Sum_probs=71.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.++++ +|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~-l~g--~~~~g~~l~ 79 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRM-MNG--MKLSGREID 79 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHH-HTT--CCBTTBCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHH-hCC--CEECCcEEE
Confidence 345789999999999999999999999999999999874 889999999999999999999999 888 778899886
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
|...
T Consensus 80 v~~a 83 (92)
T 2dgv_A 80 VRID 83 (92)
T ss_dssp CEEC
T ss_pred EEEc
Confidence 6553
No 78
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.9e-16 Score=117.42 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=73.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.++++.. .++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 86 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAA-MNG--RKILGKEVK 86 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHH-HTT--EEETTEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHH-hCC--CCcCCCeEE
Confidence 45578999999999999999999999999999999998853 3689999999999999999999 888 778899998
Q ss_pred EEeecccCC
Q psy3930 273 TTSRLSFGI 281 (299)
Q Consensus 273 v~~k~~~~~ 281 (299)
|........
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 887655433
No 79
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=121.60 Aligned_cols=84 Identities=17% Similarity=0.330 Sum_probs=75.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. || ..+.|+.|.|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~--~~--~~~~g~~l~V 100 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA--RP--HSIDGRVVEP 100 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS--CS--EEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh--CC--cEECCEEEEE
Confidence 3458999999999999999999999999999999999988899999999999999999999986 66 7788999988
Q ss_pred EeecccCC
Q psy3930 274 TSRLSFGI 281 (299)
Q Consensus 274 ~~k~~~~~ 281 (299)
........
T Consensus 101 ~~a~~~~~ 108 (116)
T 1x4b_A 101 KRAVAREE 108 (116)
T ss_dssp ECCSSCCC
T ss_pred EECCCCcc
Confidence 77555433
No 80
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.67 E-value=3.1e-16 Score=114.21 Aligned_cols=79 Identities=19% Similarity=0.406 Sum_probs=71.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +| ..+.|+.|.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~--~~~~g~~i~ 83 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ--KE--HRLDGRVID 83 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS--SC--EEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh--CC--CEECCEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999974 55 568899998
Q ss_pred EEe
Q psy3930 273 TTS 275 (299)
Q Consensus 273 v~~ 275 (299)
|+.
T Consensus 84 v~~ 86 (87)
T 3s7r_A 84 PKK 86 (87)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
No 81
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.3e-16 Score=116.68 Aligned_cols=80 Identities=26% Similarity=0.359 Sum_probs=74.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|++|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~ 88 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER-ANG--MELDGRRIR 88 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHH-HTT--EEETTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHH-hCC--CEECCEEEE
Confidence 45568999999999999999999999999999999999988899999999999999999999999 888 778899988
Q ss_pred EEe
Q psy3930 273 TTS 275 (299)
Q Consensus 273 v~~ 275 (299)
|..
T Consensus 89 v~~ 91 (95)
T 2cqc_A 89 VSG 91 (95)
T ss_dssp EEC
T ss_pred EEe
Confidence 765
No 82
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=4.6e-16 Score=125.98 Aligned_cols=84 Identities=26% Similarity=0.407 Sum_probs=77.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~-l~g--~~~~g~~l~ 112 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY-ING--TRLDDRIIR 112 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-TTT--SEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH-hCC--CEECCeEEE
Confidence 45678999999999999999999999999999999999988899999999999999999999999 898 778899999
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|.....+
T Consensus 113 V~~a~~~ 119 (156)
T 1h2v_Z 113 TDWDAGF 119 (156)
T ss_dssp EEEESCC
T ss_pred EEECCCC
Confidence 9887654
No 83
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=127.01 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=73.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCC--ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYG--KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G--~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
..++|||+|||+++++++|+++|++|| .|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~-lng--~~~~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLEL-LPG--KVLNGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHH-STT--CEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH-cCC--CEECCeEeE
Confidence 457999999999999999999999999 999999999988999999999999999999999999 999 788999999
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
|...
T Consensus 131 V~~a 134 (156)
T 3n9u_C 131 VRPA 134 (156)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8764
No 84
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=119.16 Aligned_cols=77 Identities=25% Similarity=0.289 Sum_probs=67.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|+++++ +|||||+|.+.++|++|++. +++....+.|++|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~-l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNY-YTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHH-HTTSCCEETTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHH-hccCCceECCEEEE
Confidence 345789999999999999999999999999999999875 68999999999999999998 55434778898886
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
|...
T Consensus 86 V~~A 89 (105)
T 1sjq_A 86 IQFS 89 (105)
T ss_dssp BCCC
T ss_pred EEEc
Confidence 6553
No 85
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=1.8e-16 Score=113.98 Aligned_cols=73 Identities=26% Similarity=0.498 Sum_probs=65.9
Q ss_pred CcEEEEecCCCCC------CHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCc
Q psy3930 196 ECTIYVEKLPPEA------EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSS 269 (299)
Q Consensus 196 ~~~l~V~nLp~~~------t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~ 269 (299)
+++|||+|||..+ ++++|+++|++||.|..|.+++ .+|.++|||||+|.+.++|++|++. +|| ..+.|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~-lng--~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKN-ADG--YKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTT-SSS--CCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHH-hcC--cccCCc
Confidence 3689999999999 7899999999999999999984 4899999999999999999999999 999 777788
Q ss_pred -eEEE
Q psy3930 270 -ILTT 273 (299)
Q Consensus 270 -~l~v 273 (299)
+|.|
T Consensus 76 ~~l~V 80 (81)
T 2krb_A 76 HTFRV 80 (81)
T ss_dssp SCCCC
T ss_pred eeEEe
Confidence 7654
No 86
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.66 E-value=4.1e-16 Score=118.72 Aligned_cols=82 Identities=17% Similarity=0.344 Sum_probs=72.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|++++++.+|.++|||||+|.+.++|++|++. + | ..++|+.|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~-~-~--~~l~g~~l~ 97 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-S-R--HELDSKTID 97 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHS-S-C--EEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHH-C-C--CcCCCEEEE
Confidence 45678999999999999999999999999999999999988899999999999999999999997 5 4 778899998
Q ss_pred EEeecc
Q psy3930 273 TTSRLS 278 (299)
Q Consensus 273 v~~k~~ 278 (299)
|.....
T Consensus 98 V~~a~~ 103 (109)
T 2rs2_A 98 PKVAFP 103 (109)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 876443
No 87
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=114.32 Aligned_cols=79 Identities=28% Similarity=0.493 Sum_probs=72.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCC-cceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGK-LKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~-~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
..++|||+|||.++++++|+++|++||.|..|.++.+..++. ++|||||+|.+.++|++|++. +|| ..+.|+.|.|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH-MDG--GQIDGQEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHH-HTT--CEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHH-cCC--CeECCeEEEE
Confidence 468999999999999999999999999999999999876665 899999999999999999999 898 7788999988
Q ss_pred Eee
Q psy3930 274 TSR 276 (299)
Q Consensus 274 ~~k 276 (299)
...
T Consensus 80 ~~a 82 (88)
T 4a8x_A 80 TAV 82 (88)
T ss_dssp EEE
T ss_pred EEC
Confidence 764
No 88
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=120.10 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=72.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHH---HHhhcCCceEEEEeeccCCCC---CcceEEEEEecCHHHHHHHHHhcCCCCCCCC
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIE---SVFSKYGKVTYVSLPKFKSTG---KLKGFAFVEFSTKEEAAKALELGLNPCPPDY 266 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~---~~F~~~G~i~~v~i~~~~~~g---~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~ 266 (299)
....++|||+|||+++++++|+ ++|++||+|..|.++++..++ .++|||||+|.+.++|++|++. ||| ..+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~-lng--~~~ 88 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQC-VNN--VVV 88 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHH-HTT--EEE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHH-hCC--CEE
Confidence 3446899999999999999999 999999999999999887644 5669999999999999999999 898 778
Q ss_pred CCceEEEEeec
Q psy3930 267 QSSILTTTSRL 277 (299)
Q Consensus 267 ~g~~l~v~~k~ 277 (299)
.|+.|.|....
T Consensus 89 ~gr~l~V~~a~ 99 (111)
T 2cpi_A 89 DGRTLKASLGT 99 (111)
T ss_dssp TTEEEEEESCC
T ss_pred CCEEEEEEecc
Confidence 89998776643
No 89
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=3.8e-16 Score=114.07 Aligned_cols=78 Identities=29% Similarity=0.451 Sum_probs=72.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
+.++|||+|||+++++++|+++|++||.|..+.++++..+|.++|||||+|.+.++|++|+ . +|| ..+.|+.|.|.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~-~~g--~~~~g~~l~V~ 80 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-A-LDE--SLFRGRQIKVI 80 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-G-GTT--CEETTEECEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-h-cCC--CEECCcEEEEE
Confidence 3579999999999999999999999999999999999889999999999999999999999 7 888 77889998887
Q ss_pred ee
Q psy3930 275 SR 276 (299)
Q Consensus 275 ~k 276 (299)
..
T Consensus 81 ~a 82 (89)
T 3ucg_A 81 PK 82 (89)
T ss_dssp ET
T ss_pred Ec
Confidence 64
No 90
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=3.3e-16 Score=120.76 Aligned_cols=80 Identities=24% Similarity=0.352 Sum_probs=74.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~ 113 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA-MNG--FQVGTKRLK 113 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHH-CCC--CEETTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHH-cCC--CEECCEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999 898 778899988
Q ss_pred EEe
Q psy3930 273 TTS 275 (299)
Q Consensus 273 v~~ 275 (299)
|..
T Consensus 114 V~~ 116 (118)
T 2khc_A 114 VQL 116 (118)
T ss_dssp EEE
T ss_pred EEe
Confidence 765
No 91
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.3e-16 Score=112.47 Aligned_cols=81 Identities=22% Similarity=0.350 Sum_probs=70.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.++ +|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~ 73 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRN-LHH--YKLHGVNIN 73 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHH-HTT--CBCSSCBCE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHH-hcC--CccCCcEEE
Confidence 3456899999999999999999999999999999987 46999999999999999999 888 788899998
Q ss_pred EEeecccCCCCC
Q psy3930 273 TTSRLSFGITPL 284 (299)
Q Consensus 273 v~~k~~~~~~~r 284 (299)
|........+++
T Consensus 74 v~~a~~~~~~~~ 85 (90)
T 2dnq_A 74 VEASKNKSKASS 85 (90)
T ss_dssp EECSSCCCCCCS
T ss_pred EEECCCCCCCCC
Confidence 887655544333
No 92
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=99.65 E-value=2.7e-17 Score=121.50 Aligned_cols=84 Identities=27% Similarity=0.428 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHhhhhcCCCCcchhHHHHHhhhcCCCeeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeee
Q psy3930 106 KKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRT 185 (299)
Q Consensus 106 ~~~~~~~i~~q~efyfsd~nL~~d~fl~~~~~~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~ 185 (299)
.+++...|++|+||||||+||++|.||+.+|...+||+|+++++|++|+.++.+.+.+.+|++.+..+++++++.+|+|.
T Consensus 11 ~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~md~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsedg~kVRr~ 90 (101)
T 2cqk_A 11 TEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHCHHHHHHSCTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSSEEEEC
T ss_pred HHHHHHHHHHHHHhhcchhhhccCHHHHHhhhcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCCCCeeeeC
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eccc
Q psy3930 186 VVVQ 189 (299)
Q Consensus 186 ~~~~ 189 (299)
.+..
T Consensus 91 ~~~~ 94 (101)
T 2cqk_A 91 HKRC 94 (101)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6543
No 93
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=7.4e-16 Score=115.42 Aligned_cols=82 Identities=26% Similarity=0.386 Sum_probs=71.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.| .++.+ .+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~ 84 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNS-CNK--REIEGRAIR 84 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHH-TSS--EEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHH-hCC--CEeCCeEEE
Confidence 4567899999999999999999999999977 56666 4899999999999999999999999 898 778899998
Q ss_pred EEeecccCC
Q psy3930 273 TTSRLSFGI 281 (299)
Q Consensus 273 v~~k~~~~~ 281 (299)
|........
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 887655433
No 94
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=6.5e-16 Score=116.93 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=74.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+.+++++|+++|++||.|..|.++++. +|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 101 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ-YNG--VPLDGRPMN 101 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH-HTT--CEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHH-hCC--CEeCCcEEE
Confidence 4557899999999999999999999999999999999998 999999999999999999999999 888 778899998
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
|...
T Consensus 102 V~~a 105 (107)
T 3ulh_A 102 IQLV 105 (107)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8764
No 95
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.7e-15 Score=116.02 Aligned_cols=81 Identities=22% Similarity=0.251 Sum_probs=74.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.++++. +|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 87 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISM-FNG--QLLFDRPMH 87 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHH-HTT--CEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHH-hCC--CEeCCCEEE
Confidence 3456899999999999999999999999999999999987 799999999999999999999999 888 778899999
Q ss_pred EEeec
Q psy3930 273 TTSRL 277 (299)
Q Consensus 273 v~~k~ 277 (299)
|....
T Consensus 88 v~~a~ 92 (114)
T 2do0_A 88 VKMDE 92 (114)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 87643
No 96
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=5.1e-16 Score=114.87 Aligned_cols=79 Identities=25% Similarity=0.386 Sum_probs=72.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.++++. +|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 88 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIAL-LNG--IRLYGRPIN 88 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHH-HTT--CEETTEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHH-hCC--CEECCCEEE
Confidence 4556899999999999999999999999999999999987 599999999999999999999999 888 778899988
Q ss_pred EEe
Q psy3930 273 TTS 275 (299)
Q Consensus 273 v~~ 275 (299)
|..
T Consensus 89 V~~ 91 (95)
T 2ywk_A 89 VSG 91 (95)
T ss_dssp EEC
T ss_pred EEE
Confidence 765
No 97
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=7.9e-16 Score=119.66 Aligned_cols=80 Identities=19% Similarity=0.414 Sum_probs=73.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|+ . +|| ..+.|+.|.|
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~-l~g--~~~~g~~l~V 109 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-A-MDE--TVFRGRTIKV 109 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-T-TTT--CEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-h-cCC--CeECCeEEEE
Confidence 34689999999999999999999999999999999999889999999999999999999999 7 898 7788999988
Q ss_pred Eeec
Q psy3930 274 TSRL 277 (299)
Q Consensus 274 ~~k~ 277 (299)
....
T Consensus 110 ~~a~ 113 (124)
T 2jwn_A 110 LPKR 113 (124)
T ss_dssp EESS
T ss_pred EECC
Confidence 7643
No 98
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=2.7e-16 Score=111.68 Aligned_cols=75 Identities=19% Similarity=0.379 Sum_probs=69.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
++|||+|||+++++++|+++|++||+|..|.+++++.+|.++|||||+|.+.++|++|++. ++ ..++|+.|.|+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~-~~---~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SR---HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHT-TT---CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHh-CC---CccCCEEEEEEe
Confidence 5799999999999999999999999999999999988899999999999999999999998 66 677899888765
No 99
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.7e-17 Score=116.37 Aligned_cols=75 Identities=25% Similarity=0.426 Sum_probs=68.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
...++|||+|||+++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~~ 77 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA-LKA--SGVQAQMA 77 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHH-HHH--HTCCEESC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH-hcC--CeEeeEEE
Confidence 3568999999999999999999999999999999999988999999999999999999999999 888 66666665
No 100
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=3.8e-16 Score=110.47 Aligned_cols=74 Identities=23% Similarity=0.406 Sum_probs=68.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 198 ~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
+|||+|||+++++++|+++|++||+|..|.+++++.+|.++|||||+|.+.++|++|++ +|| ..++|+.|.|+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~--~~~--~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE--IHF--HEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS--SSC--CCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH--CCC--CEECCEEEEEEe
Confidence 48999999999999999999999999999999998889999999999999999999986 677 778899988764
No 101
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.64 E-value=6.2e-16 Score=121.37 Aligned_cols=81 Identities=26% Similarity=0.335 Sum_probs=74.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~-lng--~~i~g~~l~ 119 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER-ANG--MELDGRRIR 119 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHH-HTT--CCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH-hCC--CEECCEEEE
Confidence 45578999999999999999999999999999999999988999999999999999999999999 898 778899987
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
|...
T Consensus 120 V~~a 123 (129)
T 2kxn_B 120 VDFS 123 (129)
T ss_dssp ESCC
T ss_pred EEEe
Confidence 7653
No 102
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=6.3e-16 Score=114.89 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=70.1
Q ss_pred CCCcEEEEecCCCCCCHHHHH----HHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCc
Q psy3930 194 VDECTIYVEKLPPEAEHDYIE----SVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSS 269 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~----~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~ 269 (299)
...++|||+|||+++++++|+ ++|++||.|..|.+++++.+ +|||||+|.+.++|++|++. +|| ..+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~-l~g--~~~~gr 80 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNS-LHR--YKIGSK 80 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHH-HTT--EEETTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHH-hCC--CEECCe
Confidence 456899999999999999999 99999999999999988744 88999999999999999999 898 778899
Q ss_pred eEEEEee
Q psy3930 270 ILTTTSR 276 (299)
Q Consensus 270 ~l~v~~k 276 (299)
.|.|...
T Consensus 81 ~l~V~~a 87 (96)
T 2dgx_A 81 KILVSLA 87 (96)
T ss_dssp EEEEEEC
T ss_pred EEEEEEc
Confidence 9988764
No 103
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.6e-16 Score=115.58 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=69.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|++|++. +++....+.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~-l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNY-YSAVTPHLRNQPIY 84 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHH-HHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHH-hccCCceECCcEEE
Confidence 345689999999999999999999999999999998864 68999999999999999998 55434778899998
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|......
T Consensus 85 V~~a~~~ 91 (101)
T 2cq1_A 85 IQYSNHK 91 (101)
T ss_dssp EEECSCS
T ss_pred EEEcCcc
Confidence 8775433
No 104
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.2e-16 Score=116.79 Aligned_cols=80 Identities=28% Similarity=0.467 Sum_probs=74.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
..++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.|.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~v~ 83 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN-LNG--REFSGRALRVD 83 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHH-SSS--BSCSSSCBEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHH-hCC--CeeCCcEEEEE
Confidence 458999999999999999999999999999999999988999999999999999999999999 898 77889999887
Q ss_pred eec
Q psy3930 275 SRL 277 (299)
Q Consensus 275 ~k~ 277 (299)
...
T Consensus 84 ~a~ 86 (104)
T 1p1t_A 84 NAA 86 (104)
T ss_dssp ETT
T ss_pred eCC
Confidence 643
No 105
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=1.5e-16 Score=133.40 Aligned_cols=131 Identities=14% Similarity=0.162 Sum_probs=101.5
Q ss_pred HHHHHhhhcCCCe-e--------eeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC----------
Q psy3930 130 RFFSQLLQESPEI-E--------VSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD---------- 190 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~--------l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~---------- 190 (299)
.-|..++..++.+ . .-.|+.|.+ .++|.+|+..+++..+.++.++|..+.+...
T Consensus 19 ~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~-------~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~ 91 (198)
T 1qm9_A 19 QSLFILFGVYGDVQRVKILFNKKENALVQMAD-------GNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQ 91 (198)
T ss_dssp HHHHHHHHTTCCCSEEECSTTCSSCCEEECTT-------THHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSS
T ss_pred HHHHHHHHhcCCEEEEEEEeCCCCEEEEEECC-------HHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccc
Confidence 3456666666541 1 123555544 7999999999999999999999986543210
Q ss_pred -----------------------CCCCCCcEEEEecCCCCCCHHHHHHHhhcCC-ceEEEEeeccCCCCCcceEEEEEec
Q psy3930 191 -----------------------KPDVDECTIYVEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFS 246 (299)
Q Consensus 191 -----------------------~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G-~i~~v~i~~~~~~g~~kg~~fV~F~ 246 (299)
...+..++|||+|||..+++++|+++|++|| .|..|++..+. +|+|||+|.
T Consensus 92 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~ 166 (198)
T 1qm9_A 92 GLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMG 166 (198)
T ss_dssp SCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECS
T ss_pred cccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeC
Confidence 0013378899999999999999999999999 99999996542 689999999
Q ss_pred CHHHHHHHHHhcCCCCCCCCC-CceEEEEe
Q psy3930 247 TKEEAAKALELGLNPCPPDYQ-SSILTTTS 275 (299)
Q Consensus 247 ~~~~A~~Al~~~lng~~~~~~-g~~l~v~~ 275 (299)
+.++|.+|+.. +|| ..+. |+.|.|..
T Consensus 167 ~~~~A~~A~~~-l~g--~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 167 SVEEAVQALID-LHN--HDLGENHHLRVSF 193 (198)
T ss_dssp SHHHHHHHHHH-HTS--SCCSSCCSCCEEE
T ss_pred CHHHHHHHHHH-hcC--CccCCCCeEEEEe
Confidence 99999999999 898 6667 88887665
No 106
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.1e-15 Score=113.78 Aligned_cols=80 Identities=24% Similarity=0.290 Sum_probs=71.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEE-EEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTY-VSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~-v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
....++|||+|||+++++++|+++|++||.|.. |.|+.+ .+|+++|||||+|.+.++|++|++. || ..++|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~--~~--~~~~gr~i 86 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK--HK--ERIGHRYI 86 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT--TT--CCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh--Cc--chhCCcEE
Confidence 345689999999999999999999999999987 899988 5999999999999999999999996 66 78889998
Q ss_pred EEEeec
Q psy3930 272 TTTSRL 277 (299)
Q Consensus 272 ~v~~k~ 277 (299)
.|....
T Consensus 87 ~v~~~~ 92 (104)
T 1wg5_A 87 EIFKSS 92 (104)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 886643
No 107
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=115.64 Aligned_cols=85 Identities=21% Similarity=0.251 Sum_probs=74.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCc-eEEEEee-ccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGK-VTYVSLP-KFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~-i~~v~i~-~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
...++|||+|||.++++++|+++|++||. |..|.++ .+..+|.++|||||+|.+.++|++|++. +|+....+.|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRK-LMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTT-TTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHH-hhCCCceecCCeE
Confidence 45689999999999999999999999998 9999998 7888899999999999999999999999 7511277889999
Q ss_pred EEEeeccc
Q psy3930 272 TTTSRLSF 279 (299)
Q Consensus 272 ~v~~k~~~ 279 (299)
.|......
T Consensus 85 ~V~~a~~~ 92 (109)
T 2dis_A 85 AVDWAEPE 92 (109)
T ss_dssp EEEESCSS
T ss_pred EEEEcCCC
Confidence 88765443
No 108
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.64 E-value=2.6e-16 Score=123.84 Aligned_cols=83 Identities=28% Similarity=0.372 Sum_probs=74.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEE--EEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCC--CCCCCC
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTY--VSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPC--PPDYQS 268 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~--v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~--~~~~~g 268 (299)
....++|||+|||+++++++|+++|++||.|.. |++++++.+|.++|||||+|.+. +|.+|+.. +||. .+.+.|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~-l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQI-LQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHH-HTTCCCSCCGGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHH-hcCCCCCccCCC
Confidence 455789999999999999999999999999977 99999998999999999999999 99999999 8983 228889
Q ss_pred ceEEEEeec
Q psy3930 269 SILTTTSRL 277 (299)
Q Consensus 269 ~~l~v~~k~ 277 (299)
+.|.|....
T Consensus 98 r~l~V~~a~ 106 (131)
T 2m2b_A 98 KTINVEFAK 106 (131)
T ss_dssp CCCCCEECC
T ss_pred EEEEEEECC
Confidence 999887643
No 109
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=1.8e-16 Score=116.16 Aligned_cols=78 Identities=31% Similarity=0.458 Sum_probs=71.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.+ |.+|+.. +|| ..+.|+.|.|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~-l~g--~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAK-LDN--TDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHT-SCS--SCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHH-hCC--CEECCeEEEEEEc
Confidence 58999999999999999999999999999999999888999999999999999 9999999 998 7788999988764
Q ss_pred cc
Q psy3930 277 LS 278 (299)
Q Consensus 277 ~~ 278 (299)
..
T Consensus 78 ~~ 79 (90)
T 2ki2_A 78 NP 79 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 110
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=7.6e-16 Score=116.41 Aligned_cols=81 Identities=25% Similarity=0.416 Sum_probs=72.0
Q ss_pred CCCCcEEEEecCCCCC------CHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCC
Q psy3930 193 DVDECTIYVEKLPPEA------EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDY 266 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~------t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~ 266 (299)
....++|||+|||..+ ++++|+++|++||.|..|.+++ .+|.++|||||+|.+.++|++|+.. +|| ..+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~-l~g--~~~ 86 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKN-ADG--YKL 86 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHH-CSS--EEC
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHH-hCC--ccc
Confidence 3446899999999999 7899999999999999999984 4899999999999999999999999 999 778
Q ss_pred CCc-eEEEEeecc
Q psy3930 267 QSS-ILTTTSRLS 278 (299)
Q Consensus 267 ~g~-~l~v~~k~~ 278 (299)
.|+ +|.|.....
T Consensus 87 ~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 87 DKQHTFRVNLFTD 99 (105)
T ss_dssp STTCEEEEECSCC
T ss_pred CCCceEEEEEcch
Confidence 898 888876443
No 111
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.8e-16 Score=120.55 Aligned_cols=89 Identities=22% Similarity=0.294 Sum_probs=71.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-l~g--~~~~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL-VNG--YKLYGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHH-STT--CBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHH-hCC--CEeCCcEEE
Confidence 34578999999999999999999999999984332222222788899999999999999999999 998 777899998
Q ss_pred EEeecccCCCCC
Q psy3930 273 TTSRLSFGITPL 284 (299)
Q Consensus 273 v~~k~~~~~~~r 284 (299)
|.........++
T Consensus 99 v~~a~~~~~~~~ 110 (115)
T 2cpx_A 99 IEFGKNKKQRSS 110 (115)
T ss_dssp EEECCCCSCCCC
T ss_pred EEEccCCCCCCC
Confidence 887655544333
No 112
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.63 E-value=2.9e-16 Score=135.10 Aligned_cols=115 Identities=15% Similarity=0.169 Sum_probs=94.5
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC---------------------------------CC
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD---------------------------------KP 192 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~---------------------------------~~ 192 (299)
.|+.|.+ .++|.+|++.+++..+.++.++|..+.+... ..
T Consensus 75 afV~F~~-------~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (229)
T 2adc_A 75 ALVQMAD-------GNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNI 147 (229)
T ss_dssp EEEEESC-------HHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTC
T ss_pred EEEEECC-------HHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccC
Confidence 4666655 8999999999999999999999976543210 00
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCC-Cce
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQ-SSI 270 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~-g~~ 270 (299)
....++|||+|||.++++++|+++|++|| .|..|++..+ .+|||||+|.+.++|.+|++. +|| ..+. |+.
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~-l~g--~~~~~g~~ 219 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALID-LHN--HDLGENHH 219 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHH-HTT--CBSSSSCB
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHH-HCC--CccCCCCe
Confidence 13368899999999999999999999999 9999999653 267999999999999999999 898 6677 888
Q ss_pred EEEEe
Q psy3930 271 LTTTS 275 (299)
Q Consensus 271 l~v~~ 275 (299)
|.|..
T Consensus 220 l~v~~ 224 (229)
T 2adc_A 220 LRVSF 224 (229)
T ss_dssp CEEEE
T ss_pred EEEEE
Confidence 87765
No 113
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-16 Score=121.84 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=74.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||.++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|+ . +|| ..+.|+.|.|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~-l~g--~~~~g~~l~V 98 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-G-LTG--QRLLGVPIIV 98 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-H-HTT--EEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-H-cCC--CEeCCeEEEE
Confidence 44689999999999999999999999999999999999888999999999999999999999 7 888 7788999998
Q ss_pred Eeecc
Q psy3930 274 TSRLS 278 (299)
Q Consensus 274 ~~k~~ 278 (299)
.....
T Consensus 99 ~~a~~ 103 (114)
T 2cq4_A 99 QASQA 103 (114)
T ss_dssp EEHHH
T ss_pred EecCC
Confidence 77543
No 114
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=114.06 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=70.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|+.|+ .|.++.+..+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~ 85 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA-MED--GEIDGNKVT 85 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHH-HTT--CEETTEECE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHH-hCC--CeECCeEEE
Confidence 45678999999999999999999999875 567777777899999999999999999999999 898 778899888
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|......
T Consensus 86 V~~a~~~ 92 (102)
T 2fc8_A 86 LDWAKPK 92 (102)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 7775443
No 115
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.4e-16 Score=115.96 Aligned_cols=81 Identities=23% Similarity=0.238 Sum_probs=73.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-l~g--~~~~g~~l~ 88 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID-LND--RPIGSRKVK 88 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHH-TTT--CEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHH-hCC--CeeCCeEEE
Confidence 34468999999999999999999999999998888888888999999999999999999999999 998 788899998
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
|...
T Consensus 89 V~~a 92 (98)
T 2cqp_A 89 LVLG 92 (98)
T ss_dssp EEES
T ss_pred EEEc
Confidence 8774
No 116
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.1e-16 Score=117.97 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=69.8
Q ss_pred CCCCcEEEEecCCCC-CCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 193 DVDECTIYVEKLPPE-AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
....++|||+|||++ +++++|+++|++||.|..|.+++. +|||||+|.+.++|++|++. +|+....+.|++|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~-l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDH-CLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHH-HHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHH-hccCCceECCEEE
Confidence 345789999999998 999999999999999999999753 68999999999999999998 7655577899999
Q ss_pred EEEeeccc
Q psy3930 272 TTTSRLSF 279 (299)
Q Consensus 272 ~v~~k~~~ 279 (299)
.|.....+
T Consensus 95 ~V~~a~~~ 102 (112)
T 1x4f_A 95 KVDLSEKY 102 (112)
T ss_dssp EEEEECSC
T ss_pred EEEECccc
Confidence 98875544
No 117
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.2e-16 Score=117.78 Aligned_cols=70 Identities=17% Similarity=0.400 Sum_probs=65.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCC
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDY 266 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~ 266 (299)
....++|||+|||+++++++|+++|++||.|..|.++++. +|.++|||||+|.+.++|++|++. +|| ..+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~-l~g--~~~ 91 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGH-FNG--KFI 91 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHH-HBT--CCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHH-hCC--CEE
Confidence 4567899999999999999999999999999999999998 999999999999999999999999 888 445
No 118
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.63 E-value=1.5e-16 Score=141.53 Aligned_cols=127 Identities=18% Similarity=0.300 Sum_probs=100.2
Q ss_pred HHHHHhhhcCCCe-e-----------eeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCc
Q psy3930 130 RFFSQLLQESPEI-E-----------VSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDEC 197 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~-----------l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~ 197 (299)
.-|..++..++.+ . +-.|+.|.+ .++|.+|+ .+++..+.++.+.+.+. ..+
T Consensus 56 ~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~-------~~~A~~A~-~~~~~~~~g~~i~v~~~---------~~~ 118 (292)
T 2ghp_A 56 NKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFAR-------YDGALAAI-TKTHKVVGQNEIIVSHL---------TEC 118 (292)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESS-------HHHHHHHH-TTTTCEETTEECEEEEC---------CSC
T ss_pred HHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECC-------HHHHHHHH-HhCCcEeCCcEEEEEEC---------CCC
Confidence 4567777776652 1 123455544 89999999 58999999999888764 368
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 198 TIYVEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 198 ~l~V~nLp~~~t~e~L~~~F~~~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
+|||+|||+++++++|+++|+.|| .|..|.++++. .|.++|||||+|.+.++|.+|+.. +|| ..+.|+.|.|...
T Consensus 119 ~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~v~~a 194 (292)
T 2ghp_A 119 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEK-LNG--LKIEGYTLVTKVS 194 (292)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHH-HTT--CEETTEECEEEEC
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHH-hCC--CEeCCcEEEEEEC
Confidence 999999999999999999999999 99999999887 588999999999999999999999 888 7778999888764
Q ss_pred c
Q psy3930 277 L 277 (299)
Q Consensus 277 ~ 277 (299)
.
T Consensus 195 ~ 195 (292)
T 2ghp_A 195 N 195 (292)
T ss_dssp C
T ss_pred C
Confidence 4
No 119
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.63 E-value=5.9e-16 Score=115.95 Aligned_cols=79 Identities=23% Similarity=0.399 Sum_probs=69.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccC-CCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFK-STGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~-~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
....++|||+|||.++++++|+++|++|| |..|+++++. .+|.++|||||+|.+.++|.+|+ . +|| ..++|+.|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~-l~g--~~~~g~~l 90 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-S-LNE--ESLGNRRI 90 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-H-TTT--CCBTTBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-h-cCC--CEECCeEE
Confidence 45679999999999999999999999999 9999999987 58999999999999999999999 7 898 77889988
Q ss_pred EEEee
Q psy3930 272 TTTSR 276 (299)
Q Consensus 272 ~v~~k 276 (299)
.|...
T Consensus 91 ~V~~a 95 (100)
T 2j76_E 91 RVDVA 95 (100)
T ss_dssp CCEEC
T ss_pred EEEec
Confidence 76653
No 120
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.62 E-value=3.1e-16 Score=116.09 Aligned_cols=79 Identities=24% Similarity=0.269 Sum_probs=72.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
..++|||+|||+++++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-l~g--~~~~gr~l~v~ 90 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVID-LND--RPIGSRKVKLS 90 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHH-HTT--CEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHH-hCC--CeECCcEEEEE
Confidence 358999999999999999999999999999888888888999999999999999999999999 888 77889999887
Q ss_pred ee
Q psy3930 275 SR 276 (299)
Q Consensus 275 ~k 276 (299)
..
T Consensus 91 ~a 92 (95)
T 2ek1_A 91 GP 92 (95)
T ss_dssp CC
T ss_pred ec
Confidence 53
No 121
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=117.78 Aligned_cols=80 Identities=24% Similarity=0.252 Sum_probs=70.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|++|++. +++....+.|++|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~-l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNY-YTSVTPVLRGQPIY 100 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHH-HHHHCCCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHH-hccCCceECCeEEE
Confidence 345789999999999999999999999999999999875 68999999999999999998 66444788999998
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|......
T Consensus 101 V~~a~~k 107 (119)
T 2ad9_A 101 IQFSNHK 107 (119)
T ss_dssp EEECSSS
T ss_pred EEEccCC
Confidence 8875433
No 122
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.62 E-value=9e-16 Score=114.42 Aligned_cols=77 Identities=14% Similarity=0.104 Sum_probs=68.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
.+.+++|||+|||+++++++|+++|++||.|..|.+++. +|||||+|.+.++|.+|++. +||..+.+.|++|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~-ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNY-AADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHH-HHHSCEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHH-hcCCCceeCCcEEE
Confidence 345789999999999999999999999999999999863 68999999999999999999 88855568899998
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
|...
T Consensus 91 V~~S 94 (100)
T 3r27_A 91 VNYS 94 (100)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8764
No 123
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.62 E-value=2.2e-15 Score=117.24 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=76.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.++++. +|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~-l~g--~~~~g~~l~ 107 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQ-YKG--VPLDGRPMD 107 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHH-HTT--EESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHH-cCC--CEECCcEEE
Confidence 4556899999999999999999999999999999999998 999999999999999999999999 888 778899998
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|......
T Consensus 108 V~~a~~~ 114 (124)
T 2kt5_A 108 IQLVASQ 114 (124)
T ss_dssp EEEECCT
T ss_pred EEEeCCC
Confidence 8875543
No 124
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3e-15 Score=112.97 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=69.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|++. ++|....+.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~-l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTF-AADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHH-HHHSCCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHH-hccCCceECCEEEE
Confidence 345689999999999999999999999999999998864 68999999999999999998 77655778999998
Q ss_pred EEeecc
Q psy3930 273 TTSRLS 278 (299)
Q Consensus 273 v~~k~~ 278 (299)
|.....
T Consensus 85 V~~a~~ 90 (104)
T 1wex_A 85 FNYSTS 90 (104)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 877544
No 125
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=119.86 Aligned_cols=80 Identities=28% Similarity=0.476 Sum_probs=74.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 136 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN-MNE--SELFGRTIR 136 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHH-STE--EEETTEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHH-hCC--CEECCEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999 898 778899998
Q ss_pred EEe
Q psy3930 273 TTS 275 (299)
Q Consensus 273 v~~ 275 (299)
|..
T Consensus 137 v~~ 139 (140)
T 2ku7_A 137 VNL 139 (140)
T ss_dssp EEC
T ss_pred EEe
Confidence 764
No 126
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.6e-15 Score=109.73 Aligned_cols=78 Identities=21% Similarity=0.334 Sum_probs=68.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.+++ +||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 75 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRG-LDN--TEFQGKRMH 75 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHH-HTT--EEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHH-hCC--CeeCCcEEE
Confidence 45578999999999999999999999999999999974 3999999999999999999 898 778899998
Q ss_pred EEeecccCC
Q psy3930 273 TTSRLSFGI 281 (299)
Q Consensus 273 v~~k~~~~~ 281 (299)
|........
T Consensus 76 V~~a~~~~~ 84 (92)
T 2dgt_A 76 VQLSTSRLR 84 (92)
T ss_dssp EEESSCCCS
T ss_pred EEEccCCCC
Confidence 887655433
No 127
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=114.17 Aligned_cols=78 Identities=23% Similarity=0.408 Sum_probs=69.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.++++ +|||||+|.+.++|++|+.. +|| ..+.|+.|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 92 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVS-VNG--TTIEGHVVK 92 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHH-HTT--CEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHH-cCC--CEECCcEEE
Confidence 456789999999999999999999999999999999875 68999999999999999999 898 778899988
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|......
T Consensus 93 v~~a~~~ 99 (109)
T 1x4g_A 93 CYWGKES 99 (109)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 8765444
No 128
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.4e-15 Score=111.40 Aligned_cols=78 Identities=26% Similarity=0.367 Sum_probs=69.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~-l~g--~~~~g~~l~ 82 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVE-LDN--MPLRGKQLR 82 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHH-HTT--CCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHH-hCC--CEeCCceEE
Confidence 456789999999999999999999999999999999864 68999999999999999999 888 778899998
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|......
T Consensus 83 v~~a~~~ 89 (99)
T 2cpj_A 83 VRFACHS 89 (99)
T ss_dssp EEESSCC
T ss_pred EEEcCCC
Confidence 8775444
No 129
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=5.7e-15 Score=112.09 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=67.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCC-----
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQS----- 268 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g----- 268 (299)
...++|||+|||+++++++|+++|++||.|..|.++.+ |||||+|.+.++|++|++. +|| ..+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~-l~g--~~~~g~~~~~ 82 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRK-LDN--TKFRSHEGET 82 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHH-SSS--EEEECTTSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHH-HCc--CCccCCcCcc
Confidence 44689999999999999999999999999999999875 7999999999999999999 898 66777
Q ss_pred ceEEEEeeccc
Q psy3930 269 SILTTTSRLSF 279 (299)
Q Consensus 269 ~~l~v~~k~~~ 279 (299)
+.|.|......
T Consensus 83 ~~i~V~~a~~~ 93 (108)
T 1x4c_A 83 AYIRVKVDGPR 93 (108)
T ss_dssp EEEEEEESSCC
T ss_pred eEEEEEeCCCC
Confidence 88877765544
No 130
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.60 E-value=1.4e-15 Score=109.82 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=66.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
+..|||+||++.+|+++|+++|.+||+|..+.+.. ++|||||+|.+.++|.+|++. ||| ..+.|+.|+|..
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~-Ln~--~~l~gr~I~V~~ 77 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMA-LNN--CVLANTTIFAES 77 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHH-HTT--EEETTEEEEEEC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHH-hcC--CEECCcEEEEEE
Confidence 56899999999999999999999999999999875 479999999999999999999 898 888899999876
Q ss_pred e
Q psy3930 276 R 276 (299)
Q Consensus 276 k 276 (299)
.
T Consensus 78 A 78 (89)
T 2wbr_A 78 P 78 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 131
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.60 E-value=1.5e-15 Score=115.89 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=68.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
...++|||+|||+++++++|+++|++|| .|..+.+... .++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~-lng--~~l~Gr~i~ 98 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALER-LNN--IEFRGSVIT 98 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHH-TTT--EEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHH-cCC--CEECCeEEE
Confidence 3468999999999999999999999999 8999998642 4689999999999999999999 999 888999998
Q ss_pred EEeec
Q psy3930 273 TTSRL 277 (299)
Q Consensus 273 v~~k~ 277 (299)
|....
T Consensus 99 V~~a~ 103 (111)
T 2jvr_A 99 VERDD 103 (111)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 87754
No 132
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.60 E-value=6.4e-16 Score=109.22 Aligned_cols=74 Identities=27% Similarity=0.454 Sum_probs=68.1
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 198 ~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
+|||+|||+++++++|+++|++||+|..|.+++++.+|.++|||||+|.+.++|++|++. +| ..+.|+.+.|+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~--~~--~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY--HNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT--SS--CCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh--CC--CeECCEEEEEEE
Confidence 589999999999999999999999999999999988899999999999999999999985 55 678898887764
No 133
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.3e-15 Score=111.77 Aligned_cols=82 Identities=16% Similarity=0.299 Sum_probs=68.4
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 193 DVDECTIYVEKLPP-EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 193 ~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
....++|||+|||+ ++++++|+++|++||.|..|.+. +|||||+|.+.++|++|++. +|| ..+.|+.|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l 75 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEC-ESQ--EMNFGKKL 75 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHH-HTC--SSCBTTTB
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHH-cCC--CeeCCcEE
Confidence 34578999999998 99999999999999999999984 57999999999999999999 898 77889999
Q ss_pred EEEeecccCCCCCC
Q psy3930 272 TTTSRLSFGITPLG 285 (299)
Q Consensus 272 ~v~~k~~~~~~~r~ 285 (299)
.|........+.++
T Consensus 76 ~V~~a~~~~~~~~~ 89 (96)
T 2kvi_A 76 ILEVSSSNARPQFD 89 (96)
T ss_dssp CEEEEECCCC----
T ss_pred EEEEcCcCCCCCCC
Confidence 88886655444333
No 134
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=112.85 Aligned_cols=75 Identities=28% Similarity=0.368 Sum_probs=68.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
++|||+|||+++++++|+++|++||.|..|.++++ ++|||||+|.+.++|++|++. +|| ..+.|+.|.|...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRG-LDG--KVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHH-HHH--SCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHH-HCC--CeECCcEEEEEEc
Confidence 58999999999999999999999999999999876 578999999999999999999 888 6788999988875
Q ss_pred ccc
Q psy3930 277 LSF 279 (299)
Q Consensus 277 ~~~ 279 (299)
...
T Consensus 73 ~~~ 75 (101)
T 2hvz_A 73 TGM 75 (101)
T ss_dssp SSC
T ss_pred cCC
Confidence 544
No 135
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-15 Score=114.92 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=71.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.++++. +.++|||||+|.+.++|++|++. +|| ..++|+.|.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~-l~g--~~~~g~~l~ 100 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREK-LHG--TVVEGRKIE 100 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHH-HTT--CEETTEECE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHH-cCC--CEECCEEEE
Confidence 5667899999999999999999999999999999999885 44899999999999999999999 898 778899998
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
|...
T Consensus 101 V~~a 104 (109)
T 2err_A 101 VNNA 104 (109)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8764
No 136
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=3.3e-15 Score=113.71 Aligned_cols=75 Identities=25% Similarity=0.375 Sum_probs=66.5
Q ss_pred CCCCcEEEEecCCCC-CCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 193 DVDECTIYVEKLPPE-AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
....++|||+|||++ +++++|+++|++||.|..|.+ ++|||||+|.+.++|++|++. +|| ..+.|+.|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l 92 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLG-ENG--RVLAGQTL 92 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHH-HTT--CEETTEEC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHH-cCC--CEECCeEE
Confidence 344689999999999 999999999999999999998 368999999999999999999 888 77889998
Q ss_pred EEEeecc
Q psy3930 272 TTTSRLS 278 (299)
Q Consensus 272 ~v~~k~~ 278 (299)
.|.....
T Consensus 93 ~V~~a~~ 99 (110)
T 1wf1_A 93 DINMAGE 99 (110)
T ss_dssp CEEESCC
T ss_pred EEEECCC
Confidence 8877543
No 137
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.7e-15 Score=109.17 Aligned_cols=78 Identities=27% Similarity=0.348 Sum_probs=67.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcC--CceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCce
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKY--GKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSI 270 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~--G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~ 270 (299)
....++|||+|||+++++++|+++|++| |.|..|.++ +|||||+|.+.++|++|+.. +|| ..+.|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~ 80 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKA-LNG--KVLDGSP 80 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHH-HSS--EEETTEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHH-hCC--CEeCCcE
Confidence 4557899999999999999999999999 899999875 46999999999999999999 898 7778999
Q ss_pred EEEEeecccCC
Q psy3930 271 LTTTSRLSFGI 281 (299)
Q Consensus 271 l~v~~k~~~~~ 281 (299)
|.|........
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 88876544433
No 138
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=115.71 Aligned_cols=80 Identities=13% Similarity=0.091 Sum_probs=72.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCce-EEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKV-TYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i-~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
....++|||+|||+++++++|+++|+.||.| ..|.|+++. +|.++|||||+|.+.++|++|++. || ..+.|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~--~~--~~~~gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL--HR--KKLNGREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG--CS--EEETTEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh--CC--CccCCeEE
Confidence 3456899999999999999999999999999 889999998 999999999999999999999985 76 88899999
Q ss_pred EEEeec
Q psy3930 272 TTTSRL 277 (299)
Q Consensus 272 ~v~~k~ 277 (299)
.|....
T Consensus 87 ~v~~a~ 92 (114)
T 2cpy_A 87 FVHVVT 92 (114)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 997653
No 139
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=6.6e-15 Score=115.06 Aligned_cols=78 Identities=18% Similarity=0.285 Sum_probs=68.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHH----HHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCC
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIE----SVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQS 268 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~----~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g 268 (299)
....++|||+|||+.+++++|+ ++|++||.|..|.+.+ +|.++|||||+|.+.++|..|++. +|| ..+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~-lng--~~l~g 99 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEA-FQG--YPFQG 99 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHH-STT--CCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHH-HCC--CEeCC
Confidence 3457899999999999999876 6999999999998854 678899999999999999999999 999 78889
Q ss_pred ceEEEEee
Q psy3930 269 SILTTTSR 276 (299)
Q Consensus 269 ~~l~v~~k 276 (299)
++|.|...
T Consensus 100 r~l~V~~a 107 (127)
T 2a3j_A 100 NPLVITFS 107 (127)
T ss_dssp SCCEEEEC
T ss_pred CEEEEEEc
Confidence 99887653
No 140
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=4.1e-15 Score=139.61 Aligned_cols=81 Identities=16% Similarity=0.307 Sum_probs=75.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||+.+|+++|..+|++||.|..|.|+.+..+|.++|||||+|.+.++|.+||.. ||| ..+.|+.|.|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~-lng--~~i~gr~i~V 176 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKH-ADG--KKIDGRRVLV 176 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHH-cCC--CEECCEEEEE
Confidence 4457999999999999999999999999999999999988999999999999999999999999 999 7889999999
Q ss_pred Eeec
Q psy3930 274 TSRL 277 (299)
Q Consensus 274 ~~k~ 277 (299)
.+..
T Consensus 177 ~~a~ 180 (437)
T 3pgw_S 177 DVER 180 (437)
T ss_pred EEeC
Confidence 8764
No 141
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=106.93 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=71.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++| .|..|+++++ .+|.++|||||+|.+.++|++|++ +|| ..+.|+.|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~--~~g--~~~~gr~i~ 80 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK--CNR--EYMGGRYIE 80 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH--SCS--EEETTEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH--hCC--ceeCCcEEE
Confidence 3456899999999999999999999999 8999999998 599999999999999999999999 677 778899988
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
|...
T Consensus 81 v~~a 84 (91)
T 2dgw_A 81 VFRE 84 (91)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 8764
No 142
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.58 E-value=3.7e-15 Score=128.29 Aligned_cols=79 Identities=16% Similarity=0.297 Sum_probs=73.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCC--ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYG--KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G--~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
..++|||+|||+++++++|+++|++|| .|..|.|++++.+|.++|||||+|.+.++|++||+. +|| ..+.|+.|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~-lng--~~~~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDL-LPK--RELHGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTT-STT--SCBTTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHH-cCC--CeECCEEeE
Confidence 467899999999999999999999999 999999999988999999999999999999999999 998 788899999
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
|...
T Consensus 144 V~~a 147 (229)
T 3q2s_C 144 VTPV 147 (229)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9863
No 143
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.6e-15 Score=115.68 Aligned_cols=77 Identities=13% Similarity=0.121 Sum_probs=69.1
Q ss_pred cEEEEecC----CCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecC----HHH----HHHHHH--hcCCCC
Q psy3930 197 CTIYVEKL----PPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFST----KEE----AAKALE--LGLNPC 262 (299)
Q Consensus 197 ~~l~V~nL----p~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~----~~~----A~~Al~--~~lng~ 262 (299)
..|||+|| |+.+++++|+++|+.||+|..|.++.|+.||.++|||||+|.+ +++ |.+|+. . +||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~-lng- 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHE-SSG- 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTT-TTC-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhh-hcC-
Confidence 57999999 9999999999999999999999999999999999999999995 333 788888 5 788
Q ss_pred CCCCCCceEEEEee
Q psy3930 263 PPDYQSSILTTTSR 276 (299)
Q Consensus 263 ~~~~~g~~l~v~~k 276 (299)
..+.|+.|+|.+.
T Consensus 81 -~~I~Gr~irV~ln 93 (136)
T 2j8a_A 81 -CFIMGFKFEVILN 93 (136)
T ss_dssp -EEETTEEEEEEEC
T ss_pred -CeecCcEEEEEEC
Confidence 8899999999874
No 144
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.2e-14 Score=106.47 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=67.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.+++ +||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 74 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQ-LNG--KEVKGKRIN 74 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHH-HTT--CEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHH-hCC--CEECCcEEE
Confidence 44578999999999999999999999999999999974 3899999999999999999 888 778899998
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|......
T Consensus 75 v~~a~~~ 81 (90)
T 2dnp_A 75 VELSTKG 81 (90)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 8775443
No 145
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=3.9e-15 Score=110.35 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=67.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..+ ..+|.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 84 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEE-KQG--AEIDGRSVS 84 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHH-TTE--EEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHH-hCC--CEECCeEEE
Confidence 4567899999999999999999999999988766 23788999999999999999999999 898 778899987
Q ss_pred EEeec
Q psy3930 273 TTSRL 277 (299)
Q Consensus 273 v~~k~ 277 (299)
|....
T Consensus 85 v~~a~ 89 (96)
T 1fjc_A 85 LYYTG 89 (96)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 77643
No 146
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.56 E-value=1.3e-14 Score=111.29 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=70.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||.++++++|+++|++||.|..|.++++ +.++|||||+|.+.++|.+|+.. +|| ..+.|+.|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g~~l~v 79 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDH-LSG--FNVSNRYLVV 79 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHH-HTT--CBSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHH-cCC--CEECCeEEEE
Confidence 34689999999999999999999999999999999864 45689999999999999999999 898 7788999988
Q ss_pred Eeec
Q psy3930 274 TSRL 277 (299)
Q Consensus 274 ~~k~ 277 (299)
....
T Consensus 80 ~~a~ 83 (115)
T 3lqv_A 80 LYYN 83 (115)
T ss_dssp EECC
T ss_pred EEec
Confidence 7653
No 147
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.6e-14 Score=107.27 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=66.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCC--Cce
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQ--SSI 270 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~--g~~ 270 (299)
....++|||+|||+++++++|+++|++||.|..|.+.++ +|||||+|.+.++|++|++. +|| ..+. |+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~-l~g--~~~~~~g~~ 84 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAK-MRG--FPLGGPDRR 84 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHH-HTT--CBCSSSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHH-HCC--CEeCCCCcE
Confidence 345689999999999999999999999999999998754 67999999999999999999 888 5666 888
Q ss_pred EEEEee
Q psy3930 271 LTTTSR 276 (299)
Q Consensus 271 l~v~~k 276 (299)
|.|...
T Consensus 85 l~V~~a 90 (97)
T 1why_A 85 LRVDFA 90 (97)
T ss_dssp CEEEEC
T ss_pred EEEEEC
Confidence 877653
No 148
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.56 E-value=9.2e-15 Score=124.30 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=72.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||+++++++|+++|++||+|..|++++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+.+.+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~-~~~--~~~~g~~i~~ 89 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT-MNF--DVIKGKPVRI 89 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-HTT--CEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHH-hhh--hhcCCccccc
Confidence 3468999999999999999999999999999999999998999999999999999999999999 888 7778888877
Q ss_pred Eee
Q psy3930 274 TSR 276 (299)
Q Consensus 274 ~~k 276 (299)
...
T Consensus 90 ~~~ 92 (213)
T 4f02_A 90 MWS 92 (213)
T ss_dssp EEC
T ss_pred ccc
Confidence 654
No 149
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.56 E-value=5.5e-15 Score=116.84 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=72.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCc---eEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCc
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGK---VTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSS 269 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~---i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~ 269 (299)
....++|||+|||+++|+++|+++|++||. |..|++++++. |+++|||||+|.+.++|++|++ +|| ..++|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~--~~g--~~l~gr 115 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK--KDR--ESMGHR 115 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT--TTE--EESSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh--cCC--CEECCE
Confidence 445789999999999999999999999999 88999999985 9999999999999999999998 677 788899
Q ss_pred eEEEEee
Q psy3930 270 ILTTTSR 276 (299)
Q Consensus 270 ~l~v~~k 276 (299)
.|.|...
T Consensus 116 ~i~V~~a 122 (136)
T 2hgl_A 116 YIEVFKS 122 (136)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9988764
No 150
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.56 E-value=2e-15 Score=119.76 Aligned_cols=79 Identities=24% Similarity=0.245 Sum_probs=69.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++|| +..|.|++++ +|+++|||||+|.+.++|++|+ . +|+ ..+.++.|.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~-~~g--~~l~gR~i~ 116 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-S-KDR--ANMQHRYIE 116 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-T-CCS--CSSSSCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-h-hCC--CEECCEEEE
Confidence 34568999999999999999999999999 7799999998 5999999999999999999999 6 788 788899887
Q ss_pred EEeec
Q psy3930 273 TTSRL 277 (299)
Q Consensus 273 v~~k~ 277 (299)
|....
T Consensus 117 V~~a~ 121 (139)
T 2hgn_A 117 LFLNS 121 (139)
T ss_dssp CEECC
T ss_pred EEECC
Confidence 76543
No 151
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=7.7e-15 Score=111.60 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=69.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||+++++++|+++|+.| .|..|+|++++ +|+++|||||+|.+.++|++|+ . +|| ..++|+.|.|
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~-~~~--~~~~gr~i~V 87 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-K-RNR--MLMIQRYVEV 87 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-H-TTT--EEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-h-cCC--CeECCeEEEE
Confidence 345799999999999999999999999 89999999987 5999999999999999999999 5 788 7788999988
Q ss_pred Eee
Q psy3930 274 TSR 276 (299)
Q Consensus 274 ~~k 276 (299)
...
T Consensus 88 ~~a 90 (109)
T 2dnn_A 88 SPA 90 (109)
T ss_dssp EEC
T ss_pred EEC
Confidence 664
No 152
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.2e-15 Score=115.67 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=71.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|++||+ +|| ..+.|+.|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~--~~g--~~~~gr~i~ 97 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC--RHK--QYMGNRFIQ 97 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT--SCS--BCSTTSCBE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH--hCC--CeECCcEEE
Confidence 4456899999999999999999999999999886566566699999999999999999999999 687 888899999
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
|...
T Consensus 98 V~~a 101 (124)
T 1wel_A 98 VHPI 101 (124)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 8764
No 153
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.55 E-value=1.4e-14 Score=111.31 Aligned_cols=66 Identities=26% Similarity=0.413 Sum_probs=60.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCce
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSI 270 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~ 270 (299)
..++|||+|||+++++++|+++|++||+|..|.++.+ |||||+|.+.++|++|++. ||| ..+.|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~-l~g--~~~~gr~ 80 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRK-LDN--TKFRSHE 80 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHH-HTT--CBCCCTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHH-hCC--CEECCcE
Confidence 4689999999999999999999999999999999865 7999999999999999999 898 7788877
No 154
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.55 E-value=5.6e-15 Score=111.98 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=71.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCc---eEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCc
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGK---VTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSS 269 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~---i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~ 269 (299)
....++|||+|||+++++++|+++|+.||. |..|.+++++. |.++|||||+|.+.++|++|++ +|| ..++|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~--~~~--~~~~gr 82 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE--KHR--MYMGQR 82 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT--TTT--CCSSSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH--hCc--ceeCCe
Confidence 455789999999999999999999999998 89999999985 9999999999999999999999 577 778899
Q ss_pred eEEEEee
Q psy3930 270 ILTTTSR 276 (299)
Q Consensus 270 ~l~v~~k 276 (299)
.|.|...
T Consensus 83 ~i~V~~a 89 (107)
T 2lmi_A 83 YVEVYEI 89 (107)
T ss_dssp CCCCEEC
T ss_pred EEEEEEC
Confidence 8877653
No 155
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=2e-14 Score=108.05 Aligned_cols=75 Identities=24% Similarity=0.410 Sum_probs=67.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||+++++++|+++|++||.|..|.+++ |||||+|.+.++|++|++. +|| ..+.|+.|.|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~v 77 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEE-MNG--KDLEGENIEI 77 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHH-HTT--EEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHH-HCC--CccCCCEEEE
Confidence 4468999999999999999999999999999999873 4899999999999999999 888 6788999999
Q ss_pred Eeeccc
Q psy3930 274 TSRLSF 279 (299)
Q Consensus 274 ~~k~~~ 279 (299)
......
T Consensus 78 ~~a~~~ 83 (103)
T 2dgu_A 78 VFAKPP 83 (103)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 876544
No 156
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=1.7e-15 Score=113.45 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=69.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|++|++ +|| ..+.|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~--l~g--~~~~g~~l~ 88 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE--LTG--LKVFGNEIK 88 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH--GGG--CCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh--cCC--cEECCcEEE
Confidence 345789999999999999999999999999887 666666689999999999999999999996 787 777899988
Q ss_pred EEeec
Q psy3930 273 TTSRL 277 (299)
Q Consensus 273 v~~k~ 277 (299)
|....
T Consensus 89 V~~a~ 93 (101)
T 1fj7_A 89 LEKPK 93 (101)
T ss_dssp EECCS
T ss_pred EEEcC
Confidence 77643
No 157
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=8.4e-15 Score=112.28 Aligned_cols=64 Identities=23% Similarity=0.490 Sum_probs=59.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCC---CCcceEEEEEecCHHHHHHHHHhcC
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKST---GKLKGFAFVEFSTKEEAAKALELGL 259 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~---g~~kg~~fV~F~~~~~A~~Al~~~l 259 (299)
...++|||+|||+++++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|++|++. +
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~-~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDA-C 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHH-S
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHh-h
Confidence 3468999999999999999999999999999 888887766 79999999999999999999998 5
No 158
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=103.87 Aligned_cols=75 Identities=21% Similarity=0.307 Sum_probs=66.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|++|++.+.|| ..+.|++|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~--~~~~g~~l~ 80 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNK--LIVNGRRLN 80 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTT--CEETTEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCC--eeECCCEEE
Confidence 456789999999999999999999999999999999874 689999999999999999993388 778888887
Q ss_pred EEe
Q psy3930 273 TTS 275 (299)
Q Consensus 273 v~~ 275 (299)
|..
T Consensus 81 v~~ 83 (85)
T 2ytc_A 81 VKW 83 (85)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 159
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.55 E-value=8.4e-15 Score=113.05 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=71.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCc---eEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCc
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGK---VTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSS 269 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~---i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~ 269 (299)
....++|||+|||+++++++|+++|+.||. |..|+++++. .|+++|||||+|.+.++|++|++ +|| ..+.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~-~g~~~G~afV~F~~~~~a~~Al~--~~g--~~~~gr 88 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR-EGRQSGEAFVELESEDDVKLALK--KDR--ESMGHR 88 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS-SSCEEEEEEEEBSSHHHHHHHGG--GTT--EEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC-CCCCCeEEEEEECCHHHHHHHHh--cCC--CeECCe
Confidence 345689999999999999999999999998 8999999988 49999999999999999999999 477 788899
Q ss_pred eEEEEee
Q psy3930 270 ILTTTSR 276 (299)
Q Consensus 270 ~l~v~~k 276 (299)
.|.|...
T Consensus 89 ~i~V~~a 95 (118)
T 2db1_A 89 YIEVFKS 95 (118)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 9999764
No 160
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.55 E-value=5e-15 Score=111.05 Aligned_cols=78 Identities=24% Similarity=0.430 Sum_probs=70.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||.++++++|+++|++||.|..|.++++. +|.++|||||+|.+.++|++|++ +| ..++|+.|.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~---~~--~~~~g~~l~v 80 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE---SQ--INFHGKKLKL 80 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT---CC--CEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh---CC--CeECCEEEEE
Confidence 345899999999999999999999999999999999998 99999999999999999999987 55 6777888887
Q ss_pred Eeec
Q psy3930 274 TSRL 277 (299)
Q Consensus 274 ~~k~ 277 (299)
....
T Consensus 81 ~~a~ 84 (102)
T 2xs2_A 81 GPAI 84 (102)
T ss_dssp EEEE
T ss_pred EECC
Confidence 6544
No 161
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.55 E-value=1.1e-14 Score=110.68 Aligned_cols=74 Identities=26% Similarity=0.514 Sum_probs=67.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|.++ +|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~-l~g--~~~~g~~l~ 96 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEE-VHG--KSFANQPLE 96 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHH-HTT--CEETTEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHH-cCC--CEECCeEEE
Confidence 5667899999999999999999999999999999987 57999999999999999999 898 777899987
Q ss_pred EEeec
Q psy3930 273 TTSRL 277 (299)
Q Consensus 273 v~~k~ 277 (299)
|....
T Consensus 97 V~~a~ 101 (108)
T 2jvo_A 97 VVYSK 101 (108)
T ss_dssp EESCS
T ss_pred EEEec
Confidence 76643
No 162
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.54 E-value=7.4e-15 Score=108.99 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=69.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHH----HHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCC
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIE----SVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQS 268 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~----~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g 268 (299)
....++|||+|||.++++++|+ ++|++||.|..|.+++ +|.++|||||+|.+.++|++|++. +|| ..+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~-l~g--~~~~g 78 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRS-MQG--FPFYD 78 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHH-HTT--CEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHH-hCC--CEECC
Confidence 3456899999999999999999 9999999999999874 577889999999999999999999 898 77789
Q ss_pred ceEEEEee
Q psy3930 269 SILTTTSR 276 (299)
Q Consensus 269 ~~l~v~~k 276 (299)
+.|.|...
T Consensus 79 ~~l~v~~a 86 (97)
T 1nu4_A 79 KPMRIQYA 86 (97)
T ss_dssp EECEEEEC
T ss_pred cEEEEEEc
Confidence 99887653
No 163
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.54 E-value=2e-14 Score=118.85 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=75.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||+++++++|+++|++||.|..|.++.+. +|.++|||||+|.+.++|++|++. +|| ..+.|+.|.|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~-lng--~~l~Gr~l~V 161 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQ-YKG--VPLDGRPMDI 161 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHH-STT--CBCSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHH-hCC--CEECCEEEEE
Confidence 446899999999999999999999999999999999998 999999999999999999999999 998 7888999999
Q ss_pred Eeecc
Q psy3930 274 TSRLS 278 (299)
Q Consensus 274 ~~k~~ 278 (299)
.....
T Consensus 162 ~~a~~ 166 (177)
T 2f3j_A 162 QLVAS 166 (177)
T ss_dssp EEESS
T ss_pred EEecC
Confidence 87543
No 164
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=106.95 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=66.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|. +.++. +.++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g~~l~ 87 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSC-LQG--LRLGTDTLR 87 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHH-HTT--CCSSSSCCE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHH-hCC--CEECCcEEE
Confidence 44568999999999999999999999999986 66664 35688999999999999999999 898 788899988
Q ss_pred EEee
Q psy3930 273 TTSR 276 (299)
Q Consensus 273 v~~k 276 (299)
|...
T Consensus 88 V~~a 91 (97)
T 2e5j_A 88 VALA 91 (97)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8764
No 165
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=105.13 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=60.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
..++|||+|||.++++++|+++|++||.|..|+++++ ++|||||+|.+.++|++| ++..+.+.++.|.|.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~-----~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL-----CGEDLIIKGISVHIS 73 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT-----TTCEEEETTEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH-----hcCCceeCCEEEEEE
Confidence 4689999999999999999999999999999999865 578999999999999743 443355577777665
Q ss_pred eecc
Q psy3930 275 SRLS 278 (299)
Q Consensus 275 ~k~~ 278 (299)
....
T Consensus 74 ~a~~ 77 (88)
T 1wf0_A 74 NAEP 77 (88)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 5433
No 166
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.53 E-value=2.8e-14 Score=115.59 Aligned_cols=79 Identities=24% Similarity=0.402 Sum_probs=73.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
.++|||+|||+++++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|++|++. +|| ..+.|+++.+..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~-l~~--~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT-LNG--LRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH-HTT--CEETTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHH-cCC--CccCCceEEEEe
Confidence 47999999999999999999999999999999999988999999999999999999999999 888 778899988865
Q ss_pred ec
Q psy3930 276 RL 277 (299)
Q Consensus 276 k~ 277 (299)
..
T Consensus 79 ~~ 80 (167)
T 1fxl_A 79 AR 80 (167)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 167
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.3e-14 Score=108.48 Aligned_cols=74 Identities=27% Similarity=0.292 Sum_probs=66.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
..++|||+|||+++++++|+++|++||.|..|.+++ ++|||||+|.+.++|++|++. +|| ..+.|++|.|.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~-l~g--~~~~g~~l~V~ 79 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRH-LAY--SKFHHVPLYLE 79 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHH-HTT--CBSSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHH-hCC--CEECCeEEEEE
Confidence 357999999999999999999999999999999875 367999999999999999999 898 77889999887
Q ss_pred eec
Q psy3930 275 SRL 277 (299)
Q Consensus 275 ~k~ 277 (299)
...
T Consensus 80 ~a~ 82 (111)
T 1whx_A 80 WAP 82 (111)
T ss_dssp EEE
T ss_pred ECC
Confidence 643
No 168
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.2e-14 Score=103.95 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=65.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
..++|||+|||.++++++|+++|++||.|..| +.++.+|. ||||+|.+.++|++|++ +|| ..+.|+.|.|.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~--l~g--~~~~g~~l~V~ 77 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS--QSQ--HSLGGHRLRVR 77 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT--CSC--CEETTEECCCB
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh--cCC--eEECCEEEEEE
Confidence 45799999999999999999999999999987 44554665 99999999999999999 787 77889998887
Q ss_pred eeccc
Q psy3930 275 SRLSF 279 (299)
Q Consensus 275 ~k~~~ 279 (299)
.....
T Consensus 78 ~a~~~ 82 (94)
T 2e5g_A 78 PREQK 82 (94)
T ss_dssp CSCCS
T ss_pred ECCcC
Confidence 55433
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.53 E-value=3e-14 Score=115.75 Aligned_cols=80 Identities=20% Similarity=0.361 Sum_probs=73.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
..++|||+|||+++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. ++| ..+.|+.|.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~-l~~--~~~~g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV-LNG--ITVRNKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHH-HTT--CEETTEECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHh-cCC--CEeCCcEEEEE
Confidence 358999999999999999999999999999999999988999999999999999999999998 888 77789998887
Q ss_pred eec
Q psy3930 275 SRL 277 (299)
Q Consensus 275 ~k~ 277 (299)
...
T Consensus 79 ~~~ 81 (168)
T 1b7f_A 79 YAR 81 (168)
T ss_dssp ECC
T ss_pred ecC
Confidence 543
No 170
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.7e-14 Score=103.62 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=65.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|+ ++++++|+++|++||.|..|.+. .++|||||+|.+.++|++|+.. +|| ..+.|+.|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~-l~g--~~~~g~~l~ 80 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAE-LNG--TQVESVQLK 80 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHH-TTT--EEETTEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHH-hCC--CeECCeEEE
Confidence 345689999996 89999999999999999999985 3468999999999999999999 998 677899988
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|......
T Consensus 81 v~~a~~~ 87 (97)
T 1x5p_A 81 VNIARKQ 87 (97)
T ss_dssp EECCSSC
T ss_pred EEECCCC
Confidence 8765443
No 171
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.52 E-value=4.1e-14 Score=105.29 Aligned_cols=73 Identities=16% Similarity=0.362 Sum_probs=66.1
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 193 DVDECTIYVEKLPP-EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 193 ~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
....++|||+|||+ ++++++|+++|++||.|..|.+. +|||||+|.+.++|++|++. +|| ..+.|+.|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~-l~g--~~~~g~~l 87 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEX-ESQ--EMNFGKKL 87 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHH-HTT--SEETTEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHH-cCC--CEECCEEE
Confidence 56679999999998 99999999999999999999983 67999999999999999999 888 77789998
Q ss_pred EEEee
Q psy3930 272 TTTSR 276 (299)
Q Consensus 272 ~v~~k 276 (299)
.|...
T Consensus 88 ~V~~a 92 (97)
T 2xnq_A 88 ILEVS 92 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 87663
No 172
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=106.15 Aligned_cols=77 Identities=21% Similarity=0.344 Sum_probs=64.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCc-eEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGK-VTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~-i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
...++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++. +|| ...+.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~-l~g-~~~~~g~~l~ 76 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIET-LSG-KVELHGKIME 76 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHH-HTT-TCEETTEECE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHH-ccC-CeeECCEEEE
Confidence 45689999999999999999999999999 6555553 368999999999999999999 786 3456789888
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|......
T Consensus 77 v~~a~~~ 83 (93)
T 2cqh_A 77 VDYSVSK 83 (93)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 8765443
No 173
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=112.62 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=68.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCce----EEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCc
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKV----TYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSS 269 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i----~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~ 269 (299)
...++|||+|||+++|+++|+++|++||.| ..|.|+++. +|+++|||||+|.+.++|++|++. |+ ..+.++
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~--~~--~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK--HK--DLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT--TT--EESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh--CC--CeeCCe
Confidence 346899999999999999999999999975 689999885 899999999999999999999985 66 677899
Q ss_pred eEEEEee
Q psy3930 270 ILTTTSR 276 (299)
Q Consensus 270 ~l~v~~k 276 (299)
.|.|...
T Consensus 96 ~i~V~~a 102 (123)
T 2dha_A 96 YIELFRS 102 (123)
T ss_dssp EECCEEE
T ss_pred EEEEEEC
Confidence 8877654
No 174
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.51 E-value=2.6e-14 Score=111.37 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=68.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceE--EEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCce
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVT--YVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSI 270 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~--~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~ 270 (299)
....++|||+|||+++++++|+++|++| .|. .|+|++++. |+++|||||+|.+.++|++|++. ++ ..+.|+.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~--~~--~~l~gR~ 112 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK--HK--ERIGHRY 112 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT--TT--CCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH--CC--CEECCEE
Confidence 3456899999999999999999999999 577 899999985 99999999999999999999985 55 7788998
Q ss_pred EEEEee
Q psy3930 271 LTTTSR 276 (299)
Q Consensus 271 l~v~~k 276 (299)
|.|...
T Consensus 113 I~V~~a 118 (126)
T 2hgm_A 113 IEVFKS 118 (126)
T ss_dssp CCCEEE
T ss_pred EEEEEC
Confidence 877653
No 175
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.51 E-value=6.1e-14 Score=116.88 Aligned_cols=83 Identities=20% Similarity=0.361 Sum_probs=74.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|+.||.|..|.+++++.+|.++|||||+|.+.++|.+|++. +| ..+.|+.|.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~--~~--~~~~g~~l~ 85 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA--RP--HKVDGRVVE 85 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT--CS--CEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc--CC--CEECCEEee
Confidence 45678999999999999999999999999999999999988999999999999999999999985 55 778899998
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
+......
T Consensus 86 v~~~~~~ 92 (196)
T 1l3k_A 86 PKRAVSR 92 (196)
T ss_dssp EEECCC-
T ss_pred eecccCc
Confidence 8775443
No 176
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.51 E-value=3.4e-14 Score=104.03 Aligned_cols=73 Identities=21% Similarity=0.356 Sum_probs=59.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||+++++++|+++|++||.|..|+++++ ++|||||+|.+.++|++ ++|..+.+.|+.+.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~-----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS-----LCGEDLIIKGISVH 77 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH-----HTTCEEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH-----HcCCCcccCCEEEE
Confidence 345689999999999999999999999999999999874 58999999999999883 34444555677776
Q ss_pred EEe
Q psy3930 273 TTS 275 (299)
Q Consensus 273 v~~ 275 (299)
|..
T Consensus 78 v~~ 80 (89)
T 3d2w_A 78 ISN 80 (89)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 177
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.51 E-value=4e-14 Score=103.29 Aligned_cols=73 Identities=19% Similarity=0.372 Sum_probs=65.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
..++|||+|||+++++++|+++|++| .|..+.+. .++|||||+|.+.++|++|++. +|| ..+.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~-l~g--~~~~g~~l~V~ 73 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQM-FHQ--YSFRGKDLIVQ 73 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHH-HTT--EEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHH-hCC--CeECCcEEEEE
Confidence 35789999999999999999999999 99999885 4588999999999999999999 898 77889999887
Q ss_pred eec
Q psy3930 275 SRL 277 (299)
Q Consensus 275 ~k~ 277 (299)
...
T Consensus 74 ~a~ 76 (88)
T 1wg1_A 74 LQP 76 (88)
T ss_dssp ECC
T ss_pred EcC
Confidence 643
No 178
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.6e-14 Score=106.89 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=64.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|++||.|..|++.+ ++|||||+|.+.++|.+|+.. +|| ..++|+.|.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~-l~g--~~~~g~~l~ 94 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVA-LAN--FPFQGRNLR 94 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHH-HTT--CEETTEECC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHH-hCC--CeECCeEEE
Confidence 34568999999999999999999999999999999873 368999999999999999999 888 777788775
Q ss_pred EE
Q psy3930 273 TT 274 (299)
Q Consensus 273 v~ 274 (299)
|.
T Consensus 95 V~ 96 (101)
T 2la4_A 95 TG 96 (101)
T ss_dssp CC
T ss_pred EE
Confidence 43
No 179
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.50 E-value=7e-14 Score=113.09 Aligned_cols=77 Identities=23% Similarity=0.350 Sum_probs=70.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
++|||+|||+++++++|+++|++||.|..|.+++++ +|.++|||||+|.+.++|.+|++. +|| ..+.|+.+.+...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~-l~~--~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQT-LNG--KQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHH-HTT--CEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHH-cCC--CccCCCeeEEEEc
Confidence 589999999999999999999999999999999987 688999999999999999999998 888 7778999888764
Q ss_pred c
Q psy3930 277 L 277 (299)
Q Consensus 277 ~ 277 (299)
.
T Consensus 77 ~ 77 (166)
T 3md3_A 77 F 77 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 180
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.2e-14 Score=106.61 Aligned_cols=82 Identities=22% Similarity=0.232 Sum_probs=66.1
Q ss_pred CCCcEEEE--ecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCC-C--CCC
Q psy3930 194 VDECTIYV--EKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPP-D--YQS 268 (299)
Q Consensus 194 ~~~~~l~V--~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~-~--~~g 268 (299)
...++||| +|||.++++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|++. |||..+ . ..+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~-lnG~~~~~~lg~g 95 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVT-LNGKEVVDDLGQK 95 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHH-TTTCEEECTTSCE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHH-hCCCEEccccCCC
Confidence 34678999 779999999999999999999999988743 68999999999999999999 999433 1 146
Q ss_pred ceEEEEee--cccCCC
Q psy3930 269 SILTTTSR--LSFGIT 282 (299)
Q Consensus 269 ~~l~v~~k--~~~~~~ 282 (299)
++|.+... +.|..|
T Consensus 96 ~~l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 96 ITLYLNFVEKVQWSGP 111 (114)
T ss_dssp EECEEEEESCCCCSSC
T ss_pred cEEEEEecccCcccCC
Confidence 77777553 344443
No 181
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.48 E-value=4.5e-14 Score=112.47 Aligned_cols=82 Identities=22% Similarity=0.320 Sum_probs=68.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEE--eecc---CCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCC
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVS--LPKF---KSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQ 267 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~--i~~~---~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~ 267 (299)
....++|||+|||+++++++|+++|++||.|..+. ++.+ ..+|.++|||||+|.+.++|.+|+.. +|| ..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~-lng--~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKE-ANG--YVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHH-HTT--BEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHH-hCC--CEeC
Confidence 34568999999999999999999999999987641 1111 23788999999999999999999999 898 7788
Q ss_pred CceEEEEeec
Q psy3930 268 SSILTTTSRL 277 (299)
Q Consensus 268 g~~l~v~~k~ 277 (299)
|+.|.|....
T Consensus 119 g~~l~V~~a~ 128 (143)
T 3egn_A 119 GKPMVVQFAR 128 (143)
T ss_dssp TEECEEEECC
T ss_pred CcEEEEEECC
Confidence 9999887653
No 182
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=102.58 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=67.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEE-eeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVS-LPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~-i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
...++|||+|||+++++++|+++|++||.|..|+ ++.++.+| .|||+|.+.++|++|+.. +|| ..+.|+.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~-l~g--~~~~g~~l~ 85 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDK-LNG--FQLENFTLK 85 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHH-HTT--CBCSSCBCE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHH-hCC--CEECCcEEE
Confidence 3468999999999999999999999999999995 88776443 399999999999999999 898 778899998
Q ss_pred EEeec
Q psy3930 273 TTSRL 277 (299)
Q Consensus 273 v~~k~ 277 (299)
|....
T Consensus 86 V~~a~ 90 (96)
T 2e44_A 86 VAYIP 90 (96)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 87643
No 183
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.47 E-value=2.2e-13 Score=111.18 Aligned_cols=81 Identities=21% Similarity=0.331 Sum_probs=69.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCC--CcceEEEEEecCHHHHHHHHHhcCCCCCC-CCCCceE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTG--KLKGFAFVEFSTKEEAAKALELGLNPCPP-DYQSSIL 271 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g--~~kg~~fV~F~~~~~A~~Al~~~lng~~~-~~~g~~l 271 (299)
+.++|||+|||+++++++|+++|++||+|..|+++++..+| .++|||||+|.+.++|++|++. +||..+ ...++++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~-l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNA-LHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHH-HTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHH-hcCcEEccCCccce
Confidence 46899999999999999999999999999999999998666 8999999999999999999999 777332 2235666
Q ss_pred EEEee
Q psy3930 272 TTTSR 276 (299)
Q Consensus 272 ~v~~k 276 (299)
.+...
T Consensus 81 ~~~~~ 85 (175)
T 3nmr_A 81 QMKPA 85 (175)
T ss_dssp EEEEC
T ss_pred EEccc
Confidence 66553
No 184
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.47 E-value=1e-13 Score=100.58 Aligned_cols=70 Identities=24% Similarity=0.403 Sum_probs=64.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcC----C-------ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCC
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKY----G-------KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCP 263 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~----G-------~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~ 263 (299)
..++|||+|||+++++++|+++|++| | .|..+.+.++ +|||||+|.+.++|++|+ . +||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~-l~g-- 74 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-A-FDG-- 74 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-G-GTT--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-h-cCC--
Confidence 46899999999999999999999999 8 8999998764 689999999999999999 7 898
Q ss_pred CCCCCceEEEE
Q psy3930 264 PDYQSSILTTT 274 (299)
Q Consensus 264 ~~~~g~~l~v~ 274 (299)
..+.|+.|.|.
T Consensus 75 ~~~~g~~l~V~ 85 (87)
T 2hzc_A 75 IIFQGQSLKIR 85 (87)
T ss_dssp CEETTEECEEE
T ss_pred CEECCeEEEEe
Confidence 77889998875
No 185
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.46 E-value=1.5e-13 Score=116.27 Aligned_cols=79 Identities=28% Similarity=0.348 Sum_probs=70.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
...++|||+|||.++++++|+++|+.||.|..|.++++..+|.++|||||+|.+.++|.+|++. +|| ..+.|+.|.|
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-l~~--~~~~g~~l~v 102 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ-MNS--VMLGGRNIKV 102 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHH-HSS--CCCC-CCCEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHH-ccC--CeeCCeeEEE
Confidence 3468999999999999999999999999999999999988999999999999999999999998 888 7788999888
Q ss_pred Ee
Q psy3930 274 TS 275 (299)
Q Consensus 274 ~~ 275 (299)
..
T Consensus 103 ~~ 104 (216)
T 2qfj_A 103 GR 104 (216)
T ss_dssp EC
T ss_pred ec
Confidence 54
No 186
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.45 E-value=2.4e-13 Score=114.99 Aligned_cols=76 Identities=25% Similarity=0.258 Sum_probs=68.8
Q ss_pred CCCcEEEEecCC-CCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 194 VDECTIYVEKLP-PEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 194 ~~~~~l~V~nLp-~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
..+++|||+||| ..+++++|+++|++||.|..|++++++ +|||||+|.+.++|++|++. ||| ..+.|++|.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~-lng--~~~~g~~l~ 73 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITH-LNN--NFMFGQKMN 73 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHH-HTT--CEETTEECE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHH-hCC--CEECCceEE
Confidence 356899999999 799999999999999999999998753 68999999999999999999 999 888899999
Q ss_pred EEeec
Q psy3930 273 TTSRL 277 (299)
Q Consensus 273 v~~k~ 277 (299)
|....
T Consensus 74 v~~s~ 78 (205)
T 3tyt_A 74 VCVSK 78 (205)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 87643
No 187
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.44 E-value=5.3e-13 Score=108.02 Aligned_cols=76 Identities=20% Similarity=0.112 Sum_probs=64.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
..+|||+|||+.+++++|+++|++||.|..|.+.... ++|||||+|.+.++|++|++. |||..+.-.++.|+|..
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~-LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLS-LDGQNIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHH-STTBCSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHH-hCCCEecCCCcEEEEEE
Confidence 3579999999999999999999999999999986432 478999999999999999999 99943333558888865
Q ss_pred e
Q psy3930 276 R 276 (299)
Q Consensus 276 k 276 (299)
.
T Consensus 121 A 121 (164)
T 1sjr_A 121 S 121 (164)
T ss_dssp C
T ss_pred e
Confidence 4
No 188
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.42 E-value=2.1e-13 Score=110.63 Aligned_cols=76 Identities=21% Similarity=0.474 Sum_probs=67.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEE
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~ 274 (299)
+.++|||+|||+++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++. + ..+.|+.+.+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~---~--~~~~g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT---Q--HILDGKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS---C--CEETTEECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc---c--cccCCeEcccc
Confidence 368999999999999999999999999999999999988999999999999999999999985 2 45567776654
Q ss_pred e
Q psy3930 275 S 275 (299)
Q Consensus 275 ~ 275 (299)
.
T Consensus 77 ~ 77 (167)
T 2cjk_A 77 R 77 (167)
T ss_dssp E
T ss_pred c
Confidence 3
No 189
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.42 E-value=6.7e-13 Score=100.12 Aligned_cols=80 Identities=19% Similarity=0.163 Sum_probs=69.1
Q ss_pred CCCcEEEEecCCC-----CCCHHHHHHHhhcCCceEEEEeeccCC-CCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCC
Q psy3930 194 VDECTIYVEKLPP-----EAEHDYIESVFSKYGKVTYVSLPKFKS-TGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQ 267 (299)
Q Consensus 194 ~~~~~l~V~nLp~-----~~t~e~L~~~F~~~G~i~~v~i~~~~~-~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~ 267 (299)
...++|+|.|+.. +-++++|++.|++||.|..|.+++++. ++.++|||||+|.+.++|.+|++. ||| ..+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~-lnG--~~~~ 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVD-LNG--RYFG 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHH-HTT--CEET
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHH-HCC--CEEC
Confidence 3467999999963 237899999999999999999998764 368899999999999999999999 999 8889
Q ss_pred CceEEEEee
Q psy3930 268 SSILTTTSR 276 (299)
Q Consensus 268 g~~l~v~~k 276 (299)
|++|.+...
T Consensus 83 Gr~i~v~~a 91 (105)
T 2pe8_A 83 GRVVKACFY 91 (105)
T ss_dssp TEECEEEEC
T ss_pred CcEEEEEEc
Confidence 999988764
No 190
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.41 E-value=9.2e-13 Score=102.76 Aligned_cols=71 Identities=23% Similarity=0.255 Sum_probs=61.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceE-EEEEecCHHHHHHHHHhcCCCCCCCCCC--ceEEE
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGF-AFVEFSTKEEAAKALELGLNPCPPDYQS--SILTT 273 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~-~fV~F~~~~~A~~Al~~~lng~~~~~~g--~~l~v 273 (299)
-.|||+||++.+|+++|+++|++||.|..|.+.... +|| |||+|.+.++|++|++. ||| ..+.| +.|+|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~-LnG--~~i~g~~~~LrI 100 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLS-LDG--QNIYNACCTLRI 100 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHH-HTT--CEEETTEEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHH-cCC--CeecCCCcEEEE
Confidence 468999999999999999999999999999887642 577 99999999999999999 999 55555 66666
Q ss_pred Ee
Q psy3930 274 TS 275 (299)
Q Consensus 274 ~~ 275 (299)
..
T Consensus 101 ~~ 102 (130)
T 3zzy_A 101 DF 102 (130)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 191
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=7.7e-13 Score=96.43 Aligned_cols=68 Identities=22% Similarity=0.326 Sum_probs=59.5
Q ss_pred CcE-EEEecCCCCCCHHH----HHHHhhcCC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCc
Q psy3930 196 ECT-IYVEKLPPEAEHDY----IESVFSKYG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSS 269 (299)
Q Consensus 196 ~~~-l~V~nLp~~~t~e~----L~~~F~~~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~ 269 (299)
..| |||+|||..+++++ |+++|++|| +|..| +| |+|||+|.+.++|++|++. ||| ..+.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~-l~G--~~l~gr 74 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKR-MEN--EDVFGN 74 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHH-HTT--CCSSSS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHH-hcC--CccCCc
Confidence 445 99999999999888 558999995 99888 33 8999999999999999999 999 888899
Q ss_pred eEEEEee
Q psy3930 270 ILTTTSR 276 (299)
Q Consensus 270 ~l~v~~k 276 (299)
+++|...
T Consensus 75 ~i~v~~A 81 (96)
T 2diu_A 75 RIIVSFT 81 (96)
T ss_dssp CCEEESS
T ss_pred eEEEEec
Confidence 9987653
No 192
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.40 E-value=7.6e-13 Score=102.46 Aligned_cols=76 Identities=22% Similarity=0.291 Sum_probs=66.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|+ ++++++|+++|++||.|..|.+. .++|||||+|.+.++|++|++. +|| ..+.|+.|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~-lng--~~~~g~~l~ 104 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAE-LNG--TQVESVQLK 104 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHH-HTT--CBCSSCBCE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHH-hCC--CEECCeEEE
Confidence 345789999996 69999999999999999999986 3478999999999999999999 898 678899998
Q ss_pred EEeeccc
Q psy3930 273 TTSRLSF 279 (299)
Q Consensus 273 v~~k~~~ 279 (299)
|......
T Consensus 105 V~~a~~~ 111 (121)
T 2bz2_A 105 VNIARKQ 111 (121)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 8775443
No 193
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=3.2e-12 Score=99.10 Aligned_cols=69 Identities=26% Similarity=0.270 Sum_probs=59.5
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceE-EEEEecCHHHHHHHHHhcCCCCCCCCCC--ceEEEE
Q psy3930 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGF-AFVEFSTKEEAAKALELGLNPCPPDYQS--SILTTT 274 (299)
Q Consensus 198 ~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~-~fV~F~~~~~A~~Al~~~lng~~~~~~g--~~l~v~ 274 (299)
.|||+|||+.+++++|+++|++||.|..|.+.. + .|| |||+|.+.++|..|++. ||| ..+.| +.|+|.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~-LnG--~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAA-LNG--ADIYAGCCTLKIE 97 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHH-HTT--CCCBTTBSEEEEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHH-hCC--CEecCCCeEEEEE
Confidence 478999999999999999999999999999864 2 276 99999999999999999 999 55544 677665
Q ss_pred e
Q psy3930 275 S 275 (299)
Q Consensus 275 ~ 275 (299)
.
T Consensus 98 ~ 98 (124)
T 2e5i_A 98 Y 98 (124)
T ss_dssp C
T ss_pred E
Confidence 4
No 194
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.36 E-value=3.1e-12 Score=112.92 Aligned_cols=78 Identities=22% Similarity=0.395 Sum_probs=70.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHH----HHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCC
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIE----SVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQS 268 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~----~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g 268 (299)
....++|||+|||.++++++|+ ++|++||.|..|.+.+ +|.++|||||+|.+.++|.+|++. +|| ..+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~-l~g--~~~~g 79 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRS-MQG--FPFYD 79 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHH-hcC--CeeCC
Confidence 3457899999999999999977 8999999999999876 788999999999999999999999 898 88889
Q ss_pred ceEEEEee
Q psy3930 269 SILTTTSR 276 (299)
Q Consensus 269 ~~l~v~~k 276 (299)
+.|.|...
T Consensus 80 ~~l~v~~a 87 (282)
T 3pgw_A 80 KPMRIQYA 87 (282)
T ss_pred cEEEEEEe
Confidence 99998765
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.34 E-value=3.7e-12 Score=109.28 Aligned_cols=77 Identities=22% Similarity=0.265 Sum_probs=69.9
Q ss_pred CCCCcEEEEecCCC-CCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceE
Q psy3930 193 DVDECTIYVEKLPP-EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSIL 271 (299)
Q Consensus 193 ~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l 271 (299)
...+++|||+|||+ ++++++|+++|++||.|..|++++++ +|||||+|.+.++|++|++. +|| ..+.|+.|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~-l~g--~~~~g~~l 102 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSH-LNG--HKLHGKPI 102 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHH-HTT--CBCSSSBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHH-hCC--CeECCeEE
Confidence 45679999999999 99999999999999999999998875 68999999999999999998 888 77889999
Q ss_pred EEEeec
Q psy3930 272 TTTSRL 277 (299)
Q Consensus 272 ~v~~k~ 277 (299)
.|....
T Consensus 103 ~v~~a~ 108 (229)
T 2adc_A 103 RITLSK 108 (229)
T ss_dssp EEECCS
T ss_pred EEEEec
Confidence 887644
No 196
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.32 E-value=3.7e-12 Score=109.62 Aligned_cols=78 Identities=21% Similarity=0.195 Sum_probs=67.4
Q ss_pred CCCCcEEEEecCCCCC---------CHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCC
Q psy3930 193 DVDECTIYVEKLPPEA---------EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCP 263 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~---------t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~ 263 (299)
....++|||+|||..+ ++++|+.+|++||+|..|+++.+ +|||||+|.+.++|+.|+++ |+|..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~a-m~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEA-MSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHH-HTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHH-hCCCE
Confidence 4567899999999998 79999999999999999999863 78999999999999999999 88844
Q ss_pred CCC----------CCceEEEEeec
Q psy3930 264 PDY----------QSSILTTTSRL 277 (299)
Q Consensus 264 ~~~----------~g~~l~v~~k~ 277 (299)
+.+ .|+.|.|....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWAN 227 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC
T ss_pred EeccccccccccCCCCEEEEEEcc
Confidence 421 78888887654
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.31 E-value=4.8e-12 Score=105.78 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=68.2
Q ss_pred CCcEEEEecCCC-CCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 195 DECTIYVEKLPP-EAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 195 ~~~~l~V~nLp~-~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
.+++|||+|||+ ++++++|+++|++||.|..|.+++++ +|||||+|.+.++|++|++. +|| ..+.|+.|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~-l~~--~~~~g~~l~v 73 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSH-LNG--HKLHGKPIRI 73 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHH-HTT--CCCSSCCCEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHH-hCC--CeecCeEEEE
Confidence 468999999999 99999999999999999999998865 67999999999999999998 888 7788999988
Q ss_pred Eeec
Q psy3930 274 TSRL 277 (299)
Q Consensus 274 ~~k~ 277 (299)
....
T Consensus 74 ~~a~ 77 (198)
T 1qm9_A 74 TLSK 77 (198)
T ss_dssp EECC
T ss_pred EEec
Confidence 7643
No 198
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.7e-11 Score=93.38 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=64.1
Q ss_pred CCCcEEEEecCCCCCC-----------HHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCC
Q psy3930 194 VDECTIYVEKLPPEAE-----------HDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPC 262 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t-----------~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~ 262 (299)
...++|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|++|+.. +||
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~-lng- 86 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQT-LDG- 86 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHH-STT-
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHH-cCC-
Confidence 4568999999944332 6899999999999999966 333 3789999999999999999999 999
Q ss_pred CCCCCCceEEEEeec
Q psy3930 263 PPDYQSSILTTTSRL 277 (299)
Q Consensus 263 ~~~~~g~~l~v~~k~ 277 (299)
..+.|++|.|....
T Consensus 87 -~~~~gr~l~v~~a~ 100 (112)
T 2dit_A 87 -RWFGGRQITAQAWD 100 (112)
T ss_dssp -CEETTEECEEEECC
T ss_pred -CEECCcEEEEEEeC
Confidence 77889999887643
No 199
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.28 E-value=2e-12 Score=108.26 Aligned_cols=79 Identities=37% Similarity=0.649 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhhhcCCCCcchhHHHHHhhh-cCCCeeeeeeecccccccCCCCHHHHHHHHHhc--Cccccccccceee
Q psy3930 107 KQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKS--KLLEVTEDGTKVR 183 (299)
Q Consensus 107 ~~~~~~i~~q~efyfsd~nL~~d~fl~~~~~-~~~~~~l~~f~~F~~i~~~~~~~~~a~~Al~~~--~~~~~~~~~~~v~ 183 (299)
.++...|++|+||||||.||++|.||+.+|. ..+|++++++++|++|+.++.+.+.+..|+..+ ..+++++++.+++
T Consensus 10 ~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed~~~vr 89 (193)
T 2voo_A 10 AALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIR 89 (193)
T ss_dssp HHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHTTTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTTSSEEE
T ss_pred HHHHHHHHHHhheecchhhcccCHHHHHHhcccCCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEecccceEE
Confidence 6778999999999999999999999999998 588999999999999999999999999999999 8889999998888
Q ss_pred ee
Q psy3930 184 RT 185 (299)
Q Consensus 184 r~ 185 (299)
|.
T Consensus 90 R~ 91 (193)
T 2voo_A 90 RS 91 (193)
T ss_dssp EC
T ss_pred ec
Confidence 76
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.28 E-value=6.5e-12 Score=109.94 Aligned_cols=77 Identities=22% Similarity=0.413 Sum_probs=68.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCce
Q psy3930 191 KPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSI 270 (299)
Q Consensus 191 ~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~ 270 (299)
......++|||+|||+++|+++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|+.. +|| ..+.|+.
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~-l~g--~~i~g~~ 87 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAE-LDG--TILKSRP 87 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHH-HTT--CEETTEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHH-cCC--cEECCce
Confidence 33566789999999999999999999999999999999754 68999999999999999998 888 6778998
Q ss_pred EEEEee
Q psy3930 271 LTTTSR 276 (299)
Q Consensus 271 l~v~~k 276 (299)
|.|...
T Consensus 88 l~v~~a 93 (261)
T 3sde_A 88 LRIRFA 93 (261)
T ss_dssp CEEEEC
T ss_pred eEeeec
Confidence 888653
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.27 E-value=1.4e-12 Score=98.23 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=61.6
Q ss_pred EecCCCCCCHHHHHHHh------------hcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCC
Q psy3930 201 VEKLPPEAEHDYIESVF------------SKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQS 268 (299)
Q Consensus 201 V~nLp~~~t~e~L~~~F------------~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g 268 (299)
+.|||..+++++|++.| ++||.|..|.++++. +|.++|||||+|.+.++|++|++. +|| ..+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~-lng--~~~~G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVID-LNN--RWFNG 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHH-HTT--CEETT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHH-HCC--CEECC
Confidence 56778778887777666 999999999999886 588999999999999999999999 999 77889
Q ss_pred ceEEEEe
Q psy3930 269 SILTTTS 275 (299)
Q Consensus 269 ~~l~v~~ 275 (299)
++|.|..
T Consensus 96 r~i~v~~ 102 (104)
T 1jmt_A 96 QPIHAEL 102 (104)
T ss_dssp EECCEEE
T ss_pred EEEEEEE
Confidence 9987764
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.27 E-value=1.1e-11 Score=93.32 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=66.8
Q ss_pred CCcEEEEecC--CCCC--------CHHHHHHHhhcCCceEEEEeeccCCC--CCcceEEEEEecCHHHHHHHHHhcCCCC
Q psy3930 195 DECTIYVEKL--PPEA--------EHDYIESVFSKYGKVTYVSLPKFKST--GKLKGFAFVEFSTKEEAAKALELGLNPC 262 (299)
Q Consensus 195 ~~~~l~V~nL--p~~~--------t~e~L~~~F~~~G~i~~v~i~~~~~~--g~~kg~~fV~F~~~~~A~~Al~~~lng~ 262 (299)
+.+.|.+.|+ |.+. .+++|++.|++||.|..|.++++..+ +.++|+|||+|.+.++|.+|++. |||
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~-lnG- 81 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQG-LTG- 81 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHH-HTT-
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHH-hCC-
Confidence 4578888887 3333 24799999999999999999988644 46899999999999999999999 999
Q ss_pred CCCCCCceEEEEee
Q psy3930 263 PPDYQSSILTTTSR 276 (299)
Q Consensus 263 ~~~~~g~~l~v~~k 276 (299)
..+.|++|.+..-
T Consensus 82 -~~f~GR~i~v~~~ 94 (105)
T 3v4m_A 82 -RKFANRVVVTKYC 94 (105)
T ss_dssp -CEETTEECEEEEE
T ss_pred -CEeCCCEEEEEEe
Confidence 8889999988763
No 203
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.25 E-value=1.8e-12 Score=106.14 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=67.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~ 272 (299)
....++|||+|||.++++++|+++|..||.+.. .++++..+|.++|||||+|.+.++|++|+ . +|| ..+.|+.|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~-l~g--~~~~g~~l~ 84 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-E-LTG--LKVFGNEIK 84 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-H-GGG--EEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-h-cCC--CEeCCeEEE
Confidence 455789999999999999999999999997765 23344457889999999999999999999 5 788 777899988
Q ss_pred EEeec
Q psy3930 273 TTSRL 277 (299)
Q Consensus 273 v~~k~ 277 (299)
|....
T Consensus 85 v~~~~ 89 (175)
T 1fje_B 85 LEKPK 89 (175)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 86643
No 204
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=4.6e-11 Score=91.69 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=68.4
Q ss_pred CCCCCcEEEEecCCCC-CCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecC-HHHHHHHHHhcCCCCCCCCCCc
Q psy3930 192 PDVDECTIYVEKLPPE-AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFST-KEEAAKALELGLNPCPPDYQSS 269 (299)
Q Consensus 192 ~~~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~-~~~A~~Al~~~lng~~~~~~g~ 269 (299)
..+.++.|||+||+.+ +++++|+++|++||+|.+|.+.++.. .|||+|.+ +++|..|+.+ +|...+.++|.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~-ln~~~~~i~g~ 86 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKD-ANNGNLQLRNK 86 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHH-TTTSCBCTTSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHH-hhcCCcEEeCc
Confidence 3567899999999999 99999999999999999999988753 59999999 8999999999 76556888998
Q ss_pred eEEEEe
Q psy3930 270 ILTTTS 275 (299)
Q Consensus 270 ~l~v~~ 275 (299)
.+.+++
T Consensus 87 ~~~~ev 92 (121)
T 1owx_A 87 EVTWEV 92 (121)
T ss_dssp SEEEEE
T ss_pred EEEEEE
Confidence 888865
No 205
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=6.1e-11 Score=88.41 Aligned_cols=61 Identities=26% Similarity=0.265 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEe
Q psy3930 205 PPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTS 275 (299)
Q Consensus 205 p~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~ 275 (299)
+.++++++|+++|++||.|..|.++ +.++|||||+|.+.++|+.|++. ++| +.+++|.|..
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~-~~~----~~g~~l~V~~ 86 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQN-EVG----LVDNPLKISW 86 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHT-CCB----CSSSBCEEEC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHh-cCC----CCCCeEEEEE
Confidence 3578999999999999999999997 35689999999999999999998 665 4588887765
No 206
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.22 E-value=2.8e-11 Score=98.49 Aligned_cols=74 Identities=23% Similarity=0.372 Sum_probs=63.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcC----C-------ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCC
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKY----G-------KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCP 263 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~----G-------~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~ 263 (299)
+.++|||+|||+++++++|+++|++| | .|..+.+.+ ++|||||+|.+.++|++|+ . +||
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~-~~~-- 72 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-A-FDG-- 72 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-G-GTT--
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-H-hCC--
Confidence 46899999999999999999999999 6 677777654 3689999999999999999 7 888
Q ss_pred CCCCCceEEEEeecc
Q psy3930 264 PDYQSSILTTTSRLS 278 (299)
Q Consensus 264 ~~~~g~~l~v~~k~~ 278 (299)
..+.|+.+.+.....
T Consensus 73 ~~~~g~~i~v~~~~~ 87 (172)
T 2g4b_A 73 IIFQGQSLKIRRPHD 87 (172)
T ss_dssp CEETTEECEEECCSS
T ss_pred cEecCceeeecCCcc
Confidence 778899998876443
No 207
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.21 E-value=2.5e-11 Score=93.37 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=67.6
Q ss_pred CCcEEEEecCCC--C---CCHHHHHHHhhcCCceEEEEeeccCC----CCCcceEEEEEecCHHHHHHHHHhcCCCCCCC
Q psy3930 195 DECTIYVEKLPP--E---AEHDYIESVFSKYGKVTYVSLPKFKS----TGKLKGFAFVEFSTKEEAAKALELGLNPCPPD 265 (299)
Q Consensus 195 ~~~~l~V~nLp~--~---~t~e~L~~~F~~~G~i~~v~i~~~~~----~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~ 265 (299)
..++|++.|+-. + -.+++|++.|++||.|..|.|+++.. ++.++|++||+|.+.++|.+|++. ||| ..
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~-LnG--r~ 95 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA-LNG--RW 95 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHH-HTT--CE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHH-HCC--CE
Confidence 357899999842 2 24689999999999999999998753 457789999999999999999999 999 88
Q ss_pred CCCceEEEEee
Q psy3930 266 YQSSILTTTSR 276 (299)
Q Consensus 266 ~~g~~l~v~~k 276 (299)
+.|+.|.+..-
T Consensus 96 f~GR~i~v~~~ 106 (118)
T 3ue2_A 96 FAGRKVVAEVY 106 (118)
T ss_dssp ETTEECEEEEE
T ss_pred ECCcEEEEEEc
Confidence 89999988764
No 208
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.18 E-value=6.3e-11 Score=98.57 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=63.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcC----C-------ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCC
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKY----G-------KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCP 263 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~----G-------~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~ 263 (299)
..++|||+|||+++++++|+++|++| | .|..+.+. .++|||||+|.+.++|++|+ . +||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~-l~g-- 72 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-A-FDG-- 72 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-G-GTT--
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-H-hcC--
Confidence 36899999999999999999999999 4 56666553 45789999999999999999 7 888
Q ss_pred CCCCCceEEEEeeccc
Q psy3930 264 PDYQSSILTTTSRLSF 279 (299)
Q Consensus 264 ~~~~g~~l~v~~k~~~ 279 (299)
..+.|+.|.|.....+
T Consensus 73 ~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 73 IIFQGQSLKIRRPHDY 88 (198)
T ss_dssp EEETTEEEEEECCCCC
T ss_pred CEEcCceEEEeCCCCC
Confidence 7788999988765444
No 209
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.10 E-value=1.4e-10 Score=104.91 Aligned_cols=70 Identities=23% Similarity=0.295 Sum_probs=59.0
Q ss_pred CCCCcEEEEec--CCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCC-CCCCc
Q psy3930 193 DVDECTIYVEK--LPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPP-DYQSS 269 (299)
Q Consensus 193 ~~~~~~l~V~n--Lp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~-~~~g~ 269 (299)
.....+|||+| |+..+|+++|+++|++||+|..|.++. ++|||||+|.+.++|++|++. |||..+ ...|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~-lnG~~~~~~~g~ 87 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVT-LNGKEVVDDLGQ 87 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHH-TTTCEEECTTSC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHH-hCCCccccccCC
Confidence 34567999998 578899999999999999999998864 368999999999999999999 999544 23345
No 210
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.93 E-value=9.8e-10 Score=83.83 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=62.1
Q ss_pred CCcEEEEecCCCCC----------CHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCC
Q psy3930 195 DECTIYVEKLPPEA----------EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPP 264 (299)
Q Consensus 195 ~~~~l~V~nLp~~~----------t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~ 264 (299)
..++|.+.|+=... .+++|++.|++||.|..|.++++. .+|+|||+|.+.++|.+|++. ||| .
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~-lnG--~ 78 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNA-LHG--R 78 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHH-HTT--C
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHH-hCC--C
Confidence 34677777773221 246889999999999999997753 489999999999999999999 999 8
Q ss_pred CCCCceEEEEee
Q psy3930 265 DYQSSILTTTSR 276 (299)
Q Consensus 265 ~~~g~~l~v~~k 276 (299)
.++|+.|.+..-
T Consensus 79 ~f~GR~i~v~~~ 90 (114)
T 3s6e_A 79 WFAGKMITAAYV 90 (114)
T ss_dssp EETTEECEEEEE
T ss_pred EECCEEEEEEEE
Confidence 899999999764
No 211
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=1.1e-08 Score=73.72 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=63.1
Q ss_pred CCCCcEEEEecCCC----CC-C---HHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCC
Q psy3930 193 DVDECTIYVEKLPP----EA-E---HDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPP 264 (299)
Q Consensus 193 ~~~~~~l~V~nLp~----~~-t---~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~ 264 (299)
.+...||+|.-.|. +. . ..+|.+.|++||.|..++++.++ +||+|.+.++|.+|++ ||| .
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~--mnG--~ 71 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS--LNG--K 71 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG--GTT--C
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh--cCC--e
Confidence 35567888887762 22 2 26789999999999999999874 9999999999999997 798 8
Q ss_pred CCCCceEEEEeec-ccC
Q psy3930 265 DYQSSILTTTSRL-SFG 280 (299)
Q Consensus 265 ~~~g~~l~v~~k~-~~~ 280 (299)
.+.|+.|+|..+. .|.
T Consensus 72 ~v~Gr~LkV~lkt~dW~ 88 (91)
T 2dnr_A 72 ELLNRTITIALKSPSGP 88 (91)
T ss_dssp EETTEEEEEEECCCSSC
T ss_pred EeCCeEEEEEeCCCCcc
Confidence 8999999999976 563
No 212
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.59 E-value=1.1e-07 Score=80.77 Aligned_cols=66 Identities=23% Similarity=0.238 Sum_probs=58.4
Q ss_pred CCHHHHHHHhhcCCceEEEEeeccC----CCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEEEee
Q psy3930 208 AEHDYIESVFSKYGKVTYVSLPKFK----STGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSR 276 (299)
Q Consensus 208 ~t~e~L~~~F~~~G~i~~v~i~~~~----~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v~~k 276 (299)
-.+++|.+.|++||.|..+.++++. .+|.++|++||+|.+.++|.+|++. ||| ..++|+.|.+..-
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~-l~g--r~~~gr~i~~~~~ 210 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA-LNG--RWFAGRKVVAEVY 210 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHH-HTT--CBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHH-hcC--ceECCeEEEEEEc
Confidence 3578999999999999999998553 3558999999999999999999999 999 8899999988763
No 213
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=6.1e-08 Score=70.26 Aligned_cols=73 Identities=14% Similarity=0.237 Sum_probs=62.3
Q ss_pred CCCCcEEEEecCCCC------CC---HHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCC
Q psy3930 193 DVDECTIYVEKLPPE------AE---HDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCP 263 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~------~t---~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~ 263 (299)
.+...||+|.-++.+ .. ..+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++ +||
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~--ldG-- 79 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD--VDG-- 79 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH--GGG--
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh--cCC--
Confidence 566789999988743 22 25689999999999999999874 9999999999999997 788
Q ss_pred CCCCCceEEEEeec
Q psy3930 264 PDYQSSILTTTSRL 277 (299)
Q Consensus 264 ~~~~g~~l~v~~k~ 277 (299)
..+.|+.|+|..|.
T Consensus 80 ~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 80 MKVKGRAVKISGPS 93 (95)
T ss_dssp SEETTEEEEEECCC
T ss_pred eeeCCeEEEEeccC
Confidence 99999999998764
No 214
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.21 E-value=6.7e-08 Score=73.57 Aligned_cols=76 Identities=11% Similarity=0.187 Sum_probs=39.1
Q ss_pred HHHHHhhhcCCCe-eee-----------eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccCCC-----
Q psy3930 130 RFFSQLLQESPEI-EVS-----------VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP----- 192 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~l~-----------~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~----- 192 (299)
.-|..++..++.+ .+. .|+.|. +.++|.+|++.+++..+.++.++|.++.+..+..
T Consensus 20 ~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~-------~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~ 92 (115)
T 4f25_A 20 KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFE-------TQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGA 92 (115)
T ss_dssp HHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEES-------CHHHHHHHHHHHTTCEETTEECEEEESSCCCC-------
T ss_pred HHHHHHHhccCCEEEEEEeecCCCCCceEEEEEC-------CHHHHHHHHHHcCCCEECCEEEEEEECCCcccccccccc
Confidence 4577777777752 222 244444 4899999999999999999999998876543322
Q ss_pred -CCCCcEEEEecCCCCCCHHH
Q psy3930 193 -DVDECTIYVEKLPPEAEHDY 212 (299)
Q Consensus 193 -~~~~~~l~V~nLp~~~t~e~ 212 (299)
.....+|||+|||+++|++.
T Consensus 93 ~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 93 RAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ---------------------
T ss_pred ccCCCCceEeCCCCCCccccc
Confidence 23446799999999998864
No 215
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=4.8e-05 Score=56.28 Aligned_cols=71 Identities=20% Similarity=0.181 Sum_probs=63.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcC-----CceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCc
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSKY-----GKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSS 269 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~~-----G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~ 269 (299)
..++|-+-|||..++...|+.+.+.+ |.+..|.+..|. +-|+|+|.+...|-+|.-+ ++| ..+.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLa-L~G--~ef~gr 90 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMI-LNG--SQFQGK 90 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHH-HSS--EEETTE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhh-cCC--eeecCe
Confidence 35789999999999999999999999 999999998875 2499999999999999988 999 888899
Q ss_pred eEEEE
Q psy3930 270 ILTTT 274 (299)
Q Consensus 270 ~l~v~ 274 (299)
+|++-
T Consensus 91 ~Lr~g 95 (117)
T 2l9w_A 91 VIRSG 95 (117)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99874
No 216
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=0.00093 Score=48.92 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=57.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhc---C--CceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCc
Q psy3930 195 DECTIYVEKLPPEAEHDYIESVFSK---Y--GKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSS 269 (299)
Q Consensus 195 ~~~~l~V~nLp~~~t~e~L~~~F~~---~--G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~ 269 (299)
.+.+|.|.|||+++.++.|.-+|+. - |+|..+.... +-|+|+|.+.+.|++.++. ..+.+.+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k----~~H~L~~~ 74 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ----ADHELHGA 74 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC----SCCBSSSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC----CcceecCe
Confidence 4578999999999999999999987 2 4788887643 2499999999999999986 34788889
Q ss_pred eEEEEee
Q psy3930 270 ILTTTSR 276 (299)
Q Consensus 270 ~l~v~~k 276 (299)
.|.|..-
T Consensus 75 ~LsV~P~ 81 (104)
T 2dhx_A 75 QLSLRPA 81 (104)
T ss_dssp BCEEEEC
T ss_pred EEEEEcC
Confidence 9988763
No 217
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=97.27 E-value=9.1e-06 Score=61.33 Aligned_cols=54 Identities=17% Similarity=0.133 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCC
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYG 221 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G 221 (299)
.+.++|.+|+..+++..+.++.++|..+.+.... .+++...++++|+++|++||
T Consensus 55 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~----------~~~~~~~~~~~l~~~~~~~g 108 (115)
T 3lqv_A 55 EDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF----------QKMDTKKKEEQLKLLKEKYG 108 (115)
T ss_dssp SSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT----------TTSCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh----------hhhhHhHhHHHHHHHHHHhC
Confidence 3489999999999999999999999988765542 46788889999999999998
No 218
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.02 E-value=0.0022 Score=46.36 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=43.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
.+.+++ ++|+++...||..+|+.||. ..|+.+-|. .|||.|.+++.|..|+..
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 355666 99999999999999999994 344554453 599999999999999997
No 219
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.86 E-value=0.0037 Score=44.98 Aligned_cols=65 Identities=11% Similarity=0.253 Sum_probs=54.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCC--cceEEEEEecCHHHHHHHHHhcCCCC
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGK--LKGFAFVEFSTKEEAAKALELGLNPC 262 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~--~kg~~fV~F~~~~~A~~Al~~~lng~ 262 (299)
++|.|++||+..|++++.+.++..+.+.+..++..+.+.. .-.-|||.|.+.+++....+. ++|+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~-~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDR-FDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHH-HTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH-hCCc
Confidence 4789999999999999999999999888888776553322 234589999999999999999 8884
No 220
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.81 E-value=0.0026 Score=46.13 Aligned_cols=52 Identities=25% Similarity=0.303 Sum_probs=44.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
+.+++ ++|+++...+|..+|+.|| -..|+.+-|. .|||.|.+++.|..|+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 45566 9999999999999999999 4456666553 599999999999999997
No 221
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.80 E-value=4.9e-05 Score=55.78 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=47.2
Q ss_pred HHHHHhhhcCCCe-ee--------eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccCCC--------
Q psy3930 130 RFFSQLLQESPEI-EV--------SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP-------- 192 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~l--------~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~~~-------- 192 (299)
.-|..++..++.+ .+ -.|+.|.+ .++|.+|+..+++..+.+..++|..+.+.....
T Consensus 15 ~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~-------~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~ 87 (101)
T 2hvz_A 15 GELERAFSYYGPLRTVWIARNPPGFAFVEFED-------PRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPAR 87 (101)
T ss_dssp HHHHHHHHHHCCCSEEEEESSSSSEEEEECSS-------HHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSCCCSCCCS
T ss_pred HHHHHHHHhcCCeEEEEEeeCCCCEEEEEECC-------HHHHHHHHHHHCCCeECCcEEEEEEccCCCCcccCCCCCcc
Confidence 4466666666541 11 23555544 899999999999999999999998876543221
Q ss_pred CCCCcEEEEecCC
Q psy3930 193 DVDECTIYVEKLP 205 (299)
Q Consensus 193 ~~~~~~l~V~nLp 205 (299)
.....++|||||+
T Consensus 88 ~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 88 RKLLEVLFNGPLE 100 (101)
T ss_dssp CCCCSCCCSCCCC
T ss_pred ccCCCceecCCCC
Confidence 1225689999997
No 222
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.78 E-value=0.0059 Score=46.00 Aligned_cols=72 Identities=19% Similarity=0.345 Sum_probs=55.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCC-CceE
Q psy3930 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQ-SSIL 271 (299)
Q Consensus 193 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~-g~~l 271 (299)
....+.|.|-|+|+.. -..+-..|++||.|.....+. + ..+-.|.|.+..+|++||.. || ..+. +..|
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~----~--~NWihI~Y~s~~~A~rAL~k--NG--~ii~g~~mI 89 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN----T--GNWMHIRYQSKLQARKALSK--DG--RIFGESIMI 89 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS----S--SSEEEEEESSHHHHHHHHTT--TT--CEETTTEEC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC----C--CCeEEEEeCCHHHHHHHHHh--CC--eEecCCEEE
Confidence 3446789999999885 667778899999999887632 1 23789999999999999995 77 5555 4667
Q ss_pred EEEe
Q psy3930 272 TTTS 275 (299)
Q Consensus 272 ~v~~ 275 (299)
.|+.
T Consensus 90 GV~p 93 (119)
T 1wwh_A 90 GVKP 93 (119)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7766
No 223
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=96.47 E-value=0.00014 Score=53.33 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
.+.++|.+|++.+++..+.++.++|..+.|
T Consensus 69 ~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 69 VTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp SSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 348999999999999999999999988764
No 224
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.12 E-value=0.029 Score=41.11 Aligned_cols=71 Identities=20% Similarity=0.126 Sum_probs=55.5
Q ss_pred CcEEEEecCCCCC-C----HHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCce
Q psy3930 196 ECTIYVEKLPPEA-E----HDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSI 270 (299)
Q Consensus 196 ~~~l~V~nLp~~~-t----~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~ 270 (299)
..+|++.||+.++ . .+.++.+|..|+++......+.- + =..|.|.++++|.+|-.. ++| ..+.|..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-----R-Rirv~F~~~~~A~~AR~~-Lh~--~~f~g~~ 75 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-----K-RVRINFSNPLSAADARLR-LHK--TEFLGKE 75 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-----T-EEEEECSSTTHHHHHHHT-STT--SEETTEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-----e-EEEEEeCChHHHHHHHHH-hcc--ceecCce
Confidence 3689999999875 3 25778999999987776655431 1 268999999999999998 888 8888998
Q ss_pred EEEEe
Q psy3930 271 LTTTS 275 (299)
Q Consensus 271 l~v~~ 275 (299)
+++=.
T Consensus 76 ~r~YF 80 (104)
T 1wey_A 76 MKLYF 80 (104)
T ss_dssp CEEEC
T ss_pred eEEEe
Confidence 77644
No 225
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.24 E-value=0.011 Score=55.19 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=43.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
...++|+|. .|...++.+|.++|++||+|..+-+-.+. | -|+.|+|.+.+++..++..
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 345899998 69999999999999999999999886543 3 5999999999999877664
No 226
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=95.16 E-value=0.001 Score=47.69 Aligned_cols=28 Identities=7% Similarity=-0.057 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHhcCccccccccceeeee
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRT 185 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~ 185 (299)
.+.++|.+|++.+|+..+.++.++|..+
T Consensus 51 ~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 51 TTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp SSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4589999999999999999999888644
No 227
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.13 E-value=0.033 Score=40.30 Aligned_cols=66 Identities=12% Similarity=0.210 Sum_probs=49.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCC--cceEEEEEecCHHHHHHHHHhcCCCC
Q psy3930 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGK--LKGFAFVEFSTKEEAAKALELGLNPC 262 (299)
Q Consensus 196 ~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~--~kg~~fV~F~~~~~A~~Al~~~lng~ 262 (299)
.-+|.|+.||+..|++++.+.++..-++.+..++..+.+.. .-.-|||.|.+.++.....+. .+|+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~-f~g~ 76 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDR-FDGY 76 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHH-STTE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHH-cCCc
Confidence 45799999999999999998888766665555544332211 123489999999999999999 8883
No 228
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=95.01 E-value=0.00073 Score=49.44 Aligned_cols=30 Identities=10% Similarity=-0.054 Sum_probs=26.2
Q ss_pred CHHHHHHHHHhcCcccccc-ccceeeeeecc
Q psy3930 159 DPDDVVKALRKSKLLEVTE-DGTKVRRTVVV 188 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~-~~~~v~r~~~~ 188 (299)
+.++|.+|++.+++..+.+ +.++|..+.+.
T Consensus 63 ~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 63 SMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp SHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred CHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 4899999999999999999 99999887653
No 229
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=95.01 E-value=0.0018 Score=46.24 Aligned_cols=32 Identities=9% Similarity=0.010 Sum_probs=25.1
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
+.++|.+|++.+++..+.++.++|..+.+...
T Consensus 54 ~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 54 SEASSKKLMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred CHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence 48999999999999999999999988775543
No 230
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=94.98 E-value=0.0023 Score=45.89 Aligned_cols=38 Identities=8% Similarity=0.152 Sum_probs=29.5
Q ss_pred eeecccccccCCCCHHHHHHHHHhc-CccccccccceeeeeecccC
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKS-KLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~-~~~~~~~~~~~v~r~~~~~~ 190 (299)
.|+.|.+ .++|.+|++.+ ++..+.|+.++|..+.+.+.
T Consensus 47 aFV~F~~-------~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 47 AFVEFSH-------LQDATRWMEANQHSLNILGQKVSMHYSDPKPK 85 (91)
T ss_dssp EEEECSS-------HHHHHHHHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred EEEEecC-------HHHHHHHHHhcCCCeEECCEEEEEEEcCCCCC
Confidence 4666655 89999999876 67789999999988776543
No 231
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.75 E-value=0.0028 Score=45.04 Aligned_cols=54 Identities=11% Similarity=0.149 Sum_probs=39.1
Q ss_pred HHHHHhhhcCCCe-eee-----eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 130 RFFSQLLQESPEI-EVS-----VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~l~-----~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
.-|..++..++.+ .+. .|+.|.+ .++|.+|+..+++..+.++.++|.++.+...
T Consensus 23 ~~l~~~F~~~G~i~~v~~~~g~afV~f~~-------~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 23 QEIRSLFEQYGKVLECDIIKNYGFVHIED-------KTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp HHHHHHHHTSSCEEEEEEETTEEEEEESS-------HHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred HHHHHHHHhCCCEEEEEEECCEEEEEECC-------HHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 4566777777652 222 3455544 8999999999999999999999998765543
No 232
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=94.63 E-value=0.0058 Score=45.86 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=27.0
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
+.++|.+|++.+++..+.++.++|..+.+..
T Consensus 57 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 57 NPADAKNAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp SHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 4899999999999999999999999876543
No 233
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.54 E-value=0.0042 Score=45.30 Aligned_cols=32 Identities=9% Similarity=-0.005 Sum_probs=27.4
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
+.++|.+|+..+++..+.+..++|..+.+...
T Consensus 66 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 66 RREDAARAIAGVSGFGYDHLILNVEWAKPSTN 97 (103)
T ss_dssp SHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred CHHHHHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence 38999999999999999999999988765443
No 234
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=94.40 E-value=0.0024 Score=47.60 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=36.4
Q ss_pred HHHHHhhhcCCCe-eee-------------eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 130 RFFSQLLQESPEI-EVS-------------VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~l~-------------~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
..|+.++..++.+ .+. .|+.| .+.++|.+|++.+|+..+.++.++|..+.
T Consensus 21 ~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f-------~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 21 TFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLF-------TSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEE-------SSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred HHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEE-------CCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4577777777652 222 24444 34899999999999999999999987654
No 235
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=94.39 E-value=0.0026 Score=44.72 Aligned_cols=30 Identities=7% Similarity=-0.088 Sum_probs=25.2
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
+.++|.+|++.+++..+.++.++|..+.+.
T Consensus 57 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 57 NKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 389999999999999999999999887643
No 236
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.34 E-value=0.0031 Score=44.87 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHHHhhhcCCCe-ee-----eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 130 RFFSQLLQESPEI-EV-----SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~l-----~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
.-|..++..++.+ .+ -.|++|.+ .++|.+|+..+++..+.++.++|..+.+...
T Consensus 24 ~~l~~~F~~~G~v~~~~~~~~~afV~f~~-------~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 24 QELRSLFERRGRVIECDVVKDYAFVHMEK-------EADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp HHHHHHHHHHSCEEEEEECSSCEEEEESC-------HHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHHcCCCEEEEEEECCEEEEEECC-------HHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 3455666665541 11 23555544 8999999999999999999999998775543
No 237
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.29 E-value=0.0046 Score=44.66 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=27.9
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
+.++|.+|+..+++..+.++.++|..+.+...
T Consensus 59 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 59 FPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp SHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred CHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 48999999999999999999999998776554
No 238
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.28 E-value=0.0057 Score=43.87 Aligned_cols=32 Identities=9% Similarity=-0.074 Sum_probs=27.6
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
+.++|.+|+..+++..+.++.++|..+.+...
T Consensus 57 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 57 SFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 88 (96)
T ss_dssp SHHHHHHHHHTTTTCEETTEECEEEESCCCCC
T ss_pred CHHHHHHHHHHcCCCEECCEEEEEEEecccCC
Confidence 38999999999999999999999998775543
No 239
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.26 E-value=0.0058 Score=44.65 Aligned_cols=32 Identities=9% Similarity=0.206 Sum_probs=27.5
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
+.++|.+|+..+++..+.++.++|..+.+...
T Consensus 66 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 66 SEEDADYAIKIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp SHHHHHHHHHHSSSCBCSSCBCEEEETTTTSC
T ss_pred CHHHHHHHHHHhCCCeECCeEEEEEECCCCCc
Confidence 48999999999999999999999998765543
No 240
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.17 E-value=0.074 Score=40.61 Aligned_cols=74 Identities=14% Similarity=0.191 Sum_probs=51.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEE-EEeeccCC------------CC-CcceEEEEEecCHHHHHHHHHhcCCCC
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTY-VSLPKFKS------------TG-KLKGFAFVEFSTKEEAAKALELGLNPC 262 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~-v~i~~~~~------------~g-~~kg~~fV~F~~~~~A~~Al~~~lng~ 262 (299)
..|.|-|+|++.+. .+-..|++||.|.. +...++.. .+ ....+-.|+|.++.+|.+||.. ||
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~--NG- 83 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE--NG- 83 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT--TT-
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh--CC-
Confidence 56788899877655 45567999999865 32221100 00 1245789999999999999995 88
Q ss_pred CCCCCCceEEEEe
Q psy3930 263 PPDYQSSILTTTS 275 (299)
Q Consensus 263 ~~~~~g~~l~v~~ 275 (299)
..++|..|.|.+
T Consensus 84 -~ii~G~mIGV~P 95 (132)
T 3p3d_A 84 -AVFNGVLLGVIP 95 (132)
T ss_dssp -CEETTEECEEEE
T ss_pred -eEeCcEEEEEEE
Confidence 777888888865
No 241
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=94.17 E-value=0.0044 Score=44.71 Aligned_cols=53 Identities=9% Similarity=0.085 Sum_probs=37.4
Q ss_pred HHHHHhhhcCCCee-e-------eeeecccccccCCCCHHHHHHHHHhcCccccc--cccceeeeeeccc
Q psy3930 130 RFFSQLLQESPEIE-V-------SVFLKCNKLARLTHDPDDVVKALRKSKLLEVT--EDGTKVRRTVVVQ 189 (299)
Q Consensus 130 ~fl~~~~~~~~~~~-l-------~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~--~~~~~v~r~~~~~ 189 (299)
.-|..++..++.+. + -.|++|. +.++|.+|++.+++..+. ++.++|..+.+.+
T Consensus 32 ~~l~~~F~~~G~v~~v~~~~~~g~afV~f~-------~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 32 AALAREFDRFGSIRTIDHVKGDSFAYIQYE-------SLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp HHHHHHHHTTSCEEEEEECSSSCCEEEEES-------SHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred HHHHHHHHhcCCeeEEEEeCCCCEEEEEEC-------CHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 45666666666521 1 2344444 489999999999999999 8899998876543
No 242
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.17 E-value=0.004 Score=44.41 Aligned_cols=53 Identities=17% Similarity=0.220 Sum_probs=37.9
Q ss_pred HHHHHhhhcCCCe-ee-----eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 130 RFFSQLLQESPEI-EV-----SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~l-----~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
.-|..++..++.+ .+ -.|++|.+ .++|.+|+..+++..+.++.++|..+.+..
T Consensus 25 ~~l~~~F~~~G~v~~v~~~~~~afV~f~~-------~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 25 QELRAKFEEYGPVIECDIVKDYAFVHMER-------AEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp HHHHHHHHTTSCCCEEEECSSEEEEEESC-------HHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred HHHHHHHHhcCCeEEEEEECCEEEEEECC-------HHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3466666666541 11 23555554 899999999999999999999998876544
No 243
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.16 E-value=0.0059 Score=44.11 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
.+.++|.+|++ +++..+.++.++|.++.+...
T Consensus 60 ~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 60 EDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp SSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCC
T ss_pred CCHHHHHHHHH-hCCCEECCeEEEEEECCCCcc
Confidence 34899999997 899999999999998876544
No 244
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=94.15 E-value=0.0031 Score=44.36 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=26.3
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
+.++|.+|+..+++..+.++.++|..+.+.
T Consensus 56 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 56 NPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred cHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 489999999999999999999999887654
No 245
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=94.11 E-value=0.0047 Score=45.26 Aligned_cols=38 Identities=8% Similarity=0.024 Sum_probs=30.7
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
-.|+.|.+ .++|.+|+..+++..+.+..++|..+.+.+
T Consensus 67 ~afV~f~~-------~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 67 YTLVEYET-------YKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp EEEEEESC-------HHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred EEEEEECC-------HHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 34566655 899999999999999999999998876543
No 246
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=94.10 E-value=0.0029 Score=44.06 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=26.1
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
+.++|.+|+..+++..+.++.++|..+.+.
T Consensus 52 ~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 52 SQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp CHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 489999999999999999999999887643
No 247
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.09 E-value=0.0067 Score=44.06 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=27.7
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
+.++|.+|++.+++..+.++.++|.++.+...
T Consensus 63 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 63 NIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp SHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 38999999999999999999999998876543
No 248
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=94.05 E-value=0.0057 Score=46.92 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=26.2
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
+.++|.+|+..+++..+.++.++|..+.+.
T Consensus 97 ~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 97 NVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp CHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 489999999999999999999999877643
No 249
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=93.91 E-value=0.0037 Score=43.72 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=23.7
Q ss_pred CHHHHHHHHHhcCccccccccceeeee
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRT 185 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~ 185 (299)
+.++|.+|++.+++..+.++.++|..+
T Consensus 58 ~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 58 LAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 489999999999999999999888764
No 250
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.90 E-value=0.0056 Score=44.50 Aligned_cols=32 Identities=13% Similarity=0.051 Sum_probs=27.5
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
+.++|.+|++.+++..+.++.++|..+.+...
T Consensus 63 ~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 63 LAEDAAAAIDNMNESELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp SHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CHHHHHHHHHHhCCCEECCcEEEEEeCCCCCC
Confidence 38999999999999999999999988775543
No 251
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.90 E-value=0.0048 Score=44.72 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=30.3
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
.|+.|.+ .++|.+|+..+++..+.++.++|..+.+..
T Consensus 61 afV~f~~-------~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 61 AYVEYEN-------ESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp EEEEESS-------HHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred EEEEECC-------HHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 4555655 899999999999999999999998876544
No 252
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.82 E-value=0.0046 Score=45.09 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=27.5
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
+.++|.+|+..+++..+.++.++|.++.+...
T Consensus 64 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 64 EHRDAAAALAAMNGRKILGKEVKVNWATTPSS 95 (103)
T ss_dssp SHHHHHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred CHHHHHHHHHHhCCCCcCCCeEEEEECCCCcc
Confidence 48999999999999999999999998776443
No 253
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=93.81 E-value=0.0039 Score=45.58 Aligned_cols=54 Identities=11% Similarity=0.218 Sum_probs=38.0
Q ss_pred HHHHHhhhcCCCe-ee-----eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 130 RFFSQLLQESPEI-EV-----SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~l-----~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
.-|..++..++.+ .+ -.|++|.+ .++|.+|+..+++..+.+..++|..+.+...
T Consensus 26 ~~l~~~F~~~G~i~~v~~~~~~afV~f~~-------~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 26 EILEKAFSQFGKLERVKKLKDYAFIHFDE-------RDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp HHHHHHHHHHSCEEEEEECSSCEEEEESS-------HHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred HHHHHHHHhcCCEEEEEEECCEEEEEeCC-------HHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 4456666666542 11 23555544 8999999999999999999999988765543
No 254
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=92.88 E-value=0.011 Score=44.09 Aligned_cols=33 Identities=21% Similarity=0.121 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
.+.++|.+|+..+++..+.++.++|.++.+...
T Consensus 65 ~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 65 DDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 347889999999999999999999988775543
No 255
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.76 E-value=0.0052 Score=43.97 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
.+.++|.+|+..+++..+.++.++|..+.+...
T Consensus 55 ~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 55 SDSECARRALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp SCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred CCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence 348999999999999999999999998765543
No 256
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=93.75 E-value=0.0063 Score=45.33 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=31.3
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
.|+.|.+ .++|.+|++.+++..+.++.++|..+.+...
T Consensus 70 afV~f~~-------~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 70 GFVSYDN-------PVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 107 (115)
T ss_dssp EEEECSS-------HHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred EEEEECC-------HHHHHHHHHHcCCCEECCEEEEEEEcCCCCc
Confidence 4666655 8999999999999999999999998775543
No 257
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.73 E-value=0.0058 Score=44.53 Aligned_cols=31 Identities=16% Similarity=0.034 Sum_probs=26.7
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
+.++|.+|+..+++..+.++.++|..+.+..
T Consensus 64 ~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 64 DRRDAQDAEAAMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp SSSHHHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred CHHHHHHHHHHcCCCEECCcEEEEEECCcCC
Confidence 3789999999999999999999999876543
No 258
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=93.70 E-value=0.0072 Score=43.51 Aligned_cols=53 Identities=9% Similarity=0.060 Sum_probs=38.0
Q ss_pred HHHHHhhhcCCC---eee---eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 130 RFFSQLLQESPE---IEV---SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 130 ~fl~~~~~~~~~---~~l---~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
.-|..++..++. +.+ -.|++|.+ .++|.+|+..+++..+.++.++|..+.+..
T Consensus 26 ~~l~~~F~~~G~v~~v~i~~g~afV~f~~-------~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 26 EDLFRIFSPYGHIMQINIKNAFGFIQFDN-------PQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp HHHHHHHTTTCCCCEEEEETTEEEEEESC-------HHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred HHHHHHHHhcCCEEEEEEeCCEEEEEECC-------HHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 446666666664 111 23555554 899999999999999999999999876543
No 259
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=93.69 E-value=0.0047 Score=45.76 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=30.1
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
-.|+.|.+ .++|.+|++.+++..+.++.++|..+.+.
T Consensus 70 ~afV~F~~-------~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 70 YGFITFSD-------SECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp EEEEEESC-------HHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred EEEEEECC-------HHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 34566655 89999999999999999999999877643
No 260
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.60 E-value=0.0059 Score=45.45 Aligned_cols=51 Identities=10% Similarity=0.085 Sum_probs=36.9
Q ss_pred HHHHHhhhcCCCee-e-------eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 130 RFFSQLLQESPEIE-V-------SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 130 ~fl~~~~~~~~~~~-l-------~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
.-|+.++..++.+. + -.|+.|.. .++|.+|+..+++..+.++.++|.++..
T Consensus 25 ~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~-------~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 25 AEIQETFSRFGSLGRVLLPEGGITAIVEFLE-------PLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp HHHHHHHHTTSCEEEEECCSSSSCEEEEESC-------HHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred HHHHHHHHhcCCEEEEEEeCCCCEEEEEeCC-------HHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 45666666666521 1 23444544 8999999999999999999999988753
No 261
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.51 E-value=0.0061 Score=44.08 Aligned_cols=31 Identities=10% Similarity=-0.079 Sum_probs=26.6
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
+.++|.+|++.+++..+.++.++|+.+.+..
T Consensus 60 ~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 60 TRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp SSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 3789999999999999999999998876543
No 262
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=93.49 E-value=0.0068 Score=45.11 Aligned_cols=38 Identities=8% Similarity=-0.074 Sum_probs=30.7
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
.|+.|.. .++|.+|++.+++..+.++.++|..+.+...
T Consensus 60 afV~f~~-------~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 60 GFVSFFN-------KWDAENAIQQMGGQWLGGRQIRTNWATRKPP 97 (115)
T ss_dssp EEEEESS-------HHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred EEEEECC-------HHHHHHHHHHhCCCEECCEEEEEEEccCCCC
Confidence 4555554 8999999999999999999999998765443
No 263
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.43 E-value=0.0074 Score=43.04 Aligned_cols=32 Identities=16% Similarity=0.111 Sum_probs=27.4
Q ss_pred CHHHHHHHHHhcCc-cccccccceeeeeecccC
Q psy3930 159 DPDDVVKALRKSKL-LEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 159 ~~~~a~~Al~~~~~-~~~~~~~~~v~r~~~~~~ 190 (299)
+.++|.+|++.+++ ..+.+..++|.++.+...
T Consensus 53 ~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 53 DQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp CHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred CHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 48999999999999 999999999998776543
No 264
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.38 E-value=0.0068 Score=44.88 Aligned_cols=28 Identities=18% Similarity=0.071 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCccccccccceeeeeec
Q psy3930 160 PDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 160 ~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
.++|.+|+..+++..+.++.++|..+.+
T Consensus 79 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 79 SADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp SHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred HHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 7899999999999999999999987654
No 265
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.35 E-value=0.0099 Score=42.77 Aligned_cols=36 Identities=8% Similarity=0.004 Sum_probs=29.8
Q ss_pred eeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 144 VSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 144 l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
.-.|+.|.. .++|.+|++.+++..+.++.++|..+.
T Consensus 58 g~afV~f~~-------~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 58 GEAMVAFES-------RDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp EEEEEEESC-------HHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred eEEEEEECC-------HHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 345666655 899999999999999999999998765
No 266
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.35 E-value=0.04 Score=43.27 Aligned_cols=30 Identities=23% Similarity=0.097 Sum_probs=24.8
Q ss_pred EEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 226 VSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 226 v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
+.+..+. +.++|||||+|.+.++|++|++.
T Consensus 3 ~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~ 32 (158)
T 2kn4_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQ 32 (158)
T ss_dssp EEEEEEC--SSCEEEEEEECSSHHHHHHHHHH
T ss_pred EEEEecC--ccccchhHHHHHHHHhHHHHHHh
Confidence 4555553 36899999999999999999987
No 267
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=93.34 E-value=0.009 Score=43.59 Aligned_cols=38 Identities=11% Similarity=0.089 Sum_probs=30.2
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCcccccc---ccceeeeeecccC
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTE---DGTKVRRTVVVQD 190 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~---~~~~v~r~~~~~~ 190 (299)
.|+.|.+ .++|.+|++.+++..+.+ ..++|.++.+...
T Consensus 59 afV~f~~-------~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 59 AFVKFSS-------HTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 99 (105)
T ss_dssp EEEEESS-------HHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred EEEEeCC-------HHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence 4555555 899999999999999888 8899988776544
No 268
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=93.32 E-value=0.0063 Score=44.92 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=30.2
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
.|+.|.+ .++|.+|+..+++..+.+..++|..+.+..
T Consensus 71 afV~f~~-------~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 71 ALVEYET-------HKQALAAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp EEEEESS-------HHHHHHHHHHHTTCEETTEECEEEESEESS
T ss_pred EEEEECC-------HHHHHHHHHHcCCCEECCcEEEEEEcccCC
Confidence 4555554 899999999999999999999998876544
No 269
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=93.28 E-value=0.0045 Score=44.94 Aligned_cols=51 Identities=10% Similarity=0.062 Sum_probs=35.7
Q ss_pred HHHHHhhhcCCCe-ee-------eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 130 RFFSQLLQESPEI-EV-------SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~l-------~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
.-|..++..++.+ .+ -.|+.|. +.++|.+|+..+++..+.++.++|.++.+
T Consensus 42 ~~l~~~f~~~G~i~~~~~~~~~g~afV~f~-------~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 42 ADLIPLFQNFGFILDFKHYPEKGCCFIKYD-------THEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp HHHHHHHHTTSCCSEEEEETTTTEEEEECS-------SHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred HHHHHHHHhCCCEEEEEEecCCCEEEEEEC-------CHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 4566666666642 11 1244444 48899999999999999999999887653
No 270
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.28 E-value=0.0079 Score=44.33 Aligned_cols=31 Identities=16% Similarity=0.077 Sum_probs=26.9
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
+.++|.+|++.+++..+.++.++|..+.+..
T Consensus 70 ~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 70 DPRDAEDAVYGRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp CHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEEcccCC
Confidence 4899999999999999999999998876543
No 271
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.27 E-value=0.0051 Score=45.30 Aligned_cols=32 Identities=13% Similarity=0.024 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHhcCc--cccccccceeeeeeccc
Q psy3930 158 HDPDDVVKALRKSKL--LEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~--~~~~~~~~~v~r~~~~~ 189 (299)
.+.++|.+|++.+++ ..+.++.++|.++.+..
T Consensus 60 ~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 60 ATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp SSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred CCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 348899999998765 56899999998877543
No 272
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=93.27 E-value=0.0049 Score=44.33 Aligned_cols=30 Identities=13% Similarity=0.028 Sum_probs=26.3
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
+.++|.+|++.+++..+.++.++|..+.+.
T Consensus 53 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 53 DLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 489999999999999999999999887654
No 273
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=93.19 E-value=0.0074 Score=42.86 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=37.8
Q ss_pred HHHHHhhhcCCCee------------eeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 130 RFFSQLLQESPEIE------------VSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 130 ~fl~~~~~~~~~~~------------l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
.-|..++..++.+. .-.|+.|.+ .++|.+|+..+++..+.++.++|+.+.+..
T Consensus 23 ~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~-------~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 23 KMLKDKFNECGHVLYADIKMENGKSKGCGVVKFES-------PEVAERACRMMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp HHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESS-------HHHHHHHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred HHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECC-------HHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 44666666666421 223445544 899999999999999999999998876543
No 274
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.16 E-value=0.013 Score=43.57 Aligned_cols=38 Identities=8% Similarity=-0.032 Sum_probs=31.3
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
.|+.|.+ .++|.+|+..+++..+.++.++|..+.+...
T Consensus 70 afV~f~~-------~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 70 AFITFPN-------KEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp EEEECSS-------HHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred EEEEECC-------HHHHHHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence 4666655 8999999999999999999999998776544
No 275
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=93.15 E-value=0.0052 Score=45.97 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=25.7
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
+.++|.+|++.+++.++.++.++|..+..
T Consensus 76 ~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 76 SEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp SHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 48999999999999999999999987653
No 276
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.14 E-value=0.0088 Score=44.10 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=27.2
Q ss_pred CHHHHHHHHHhcC------ccccccccceeeeeecccC
Q psy3930 159 DPDDVVKALRKSK------LLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 159 ~~~~a~~Al~~~~------~~~~~~~~~~v~r~~~~~~ 190 (299)
+.++|.+|+..++ +..+.++.++|.++.+...
T Consensus 66 ~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 66 TQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp SHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCC
T ss_pred CHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCcc
Confidence 3899999999998 9999999999988776544
No 277
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.09 E-value=0.0086 Score=43.58 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=29.4
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
.|+.|.+ .++|.+|++.+++..+.++.++|..+.+.
T Consensus 53 afV~f~~-------~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 53 GFCEYQD-------QETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp EEEECSC-------HHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred EEEEECC-------HHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 4555554 89999999999999999999999876543
No 278
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=93.07 E-value=0.0043 Score=45.54 Aligned_cols=30 Identities=10% Similarity=-0.003 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHhcCccc--cccccceeeeeec
Q psy3930 158 HDPDDVVKALRKSKLLE--VTEDGTKVRRTVV 187 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~--~~~~~~~v~r~~~ 187 (299)
.+.++|.+|++.+++.. +.|+.++|..+.+
T Consensus 65 ~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 65 EDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp SSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred CCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 56899999999887654 7788888877653
No 279
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=93.04 E-value=0.0099 Score=45.82 Aligned_cols=32 Identities=9% Similarity=0.043 Sum_probs=27.3
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
+.++|.+|++.+++..+.++.++|..+.+...
T Consensus 93 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 93 SGSSAQQAIAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp SHHHHHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 38999999999999999999999988765543
No 280
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.04 E-value=0.005 Score=45.61 Aligned_cols=32 Identities=0% Similarity=-0.110 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHhcC--ccccccccceeeeeeccc
Q psy3930 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 158 ~~~~~a~~Al~~~~--~~~~~~~~~~v~r~~~~~ 189 (299)
.+.++|.+|++.++ +..+.++.++|.++.+..
T Consensus 60 ~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 60 NTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp SSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 34899999998764 478999999998876543
No 281
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.01 E-value=0.0071 Score=44.63 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=36.6
Q ss_pred HHHHHhhhcCCCee-------eeeeecccccccCCCCHHHHHHHHHhcCcccccc-----ccceeeeeecc
Q psy3930 130 RFFSQLLQESPEIE-------VSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTE-----DGTKVRRTVVV 188 (299)
Q Consensus 130 ~fl~~~~~~~~~~~-------l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~-----~~~~v~r~~~~ 188 (299)
.-|..++..++.+. .-.|++|.+ .++|.+||+.+++..+.+ ..++|..+.+.
T Consensus 30 ~~l~~~F~~~G~i~~~~i~~~g~afV~f~~-------~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~ 93 (108)
T 1x4c_A 30 QDLKDHMREAGDVCYADVYRDGTGVVEFVR-------KEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 93 (108)
T ss_dssp HHHHHHHGGGSCEEEEEEETTTEEEEEESS-------HHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCC
T ss_pred HHHHHHHHhcCCEeEEEEecCCEEEEEECC-------HHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCC
Confidence 34666666666421 123555554 899999999999999999 88888876654
No 282
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.99 E-value=0.16 Score=36.25 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=26.4
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
+.++|.+|++.+++..+.++.++|..+.+.
T Consensus 65 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 65 DSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 489999999999999999999999887654
No 283
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=92.99 E-value=0.0088 Score=42.74 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=28.7
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
-.|+.|.. .++|.+|++.+++..+.++.++|..+.
T Consensus 59 ~afV~f~~-------~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 59 EAMVAFES-------RDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EEEEEESS-------HHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EEEEEECC-------HHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45666655 899999999999999999999887654
No 284
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=92.93 E-value=0.0089 Score=44.14 Aligned_cols=52 Identities=6% Similarity=0.013 Sum_probs=36.7
Q ss_pred HHHHHhhhcCCCe---ee---eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 130 RFFSQLLQESPEI---EV---SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 130 ~fl~~~~~~~~~~---~l---~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
.-|..++..++.+ .+ -.|+.|.. .++|.+|+..+++..+.+..++|..+.+.
T Consensus 43 ~~l~~~F~~~G~v~~v~i~~g~afV~f~~-------~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 43 SDVETIFSKYGRVAGCSVHKGYAFVQYSN-------ERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp HHHHHHHGGGSCCSEEEEETTEEEEECSS-------SHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred HHHHHHHHhCCCeEEEEEeCCEEEEEECC-------HHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3455555555541 11 23556655 78999999999999999999999887643
No 285
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=92.87 E-value=0.007 Score=44.82 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=37.3
Q ss_pred HHHHHhhhcCCCe-ee-----eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 130 RFFSQLLQESPEI-EV-----SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~l-----~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
.-|..++..++.+ .+ -.|+.|.+ .++|.+|+..+++..+.++.++|..+.+.
T Consensus 46 ~~L~~~F~~~G~i~~v~i~kg~afV~f~~-------~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 46 SELNEIFGPFGPMKEVKILNGFAFVEFEE-------AESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp HHHHHHHTTTSCCCEEEEETTEEEEECSS-------HHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred HHHHHHHHhcCCEEEEEEECCEEEEEECC-------HHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 3466666666652 21 23555544 89999999999999999999999876644
No 286
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.86 E-value=0.0085 Score=42.72 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHhcCccccccccceeeee
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRT 185 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~ 185 (299)
.+.++|.+|++.+++..+.++.++|..+
T Consensus 66 ~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 66 LDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp SCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 3489999999999999999998888764
No 287
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=92.81 E-value=0.0096 Score=45.07 Aligned_cols=32 Identities=9% Similarity=-0.016 Sum_probs=27.4
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
+.++|.+|++.+++..+.+..+.|..+.+...
T Consensus 73 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 73 TYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp SHHHHHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred CHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 48999999999999999999999998765443
No 288
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.64 E-value=0.0083 Score=44.23 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=37.7
Q ss_pred HHHHHhhhcCCCe-e-------eeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 130 RFFSQLLQESPEI-E-------VSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~-------l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
.-|..++..++.+ . .-.|+.|.. .++|.+|+..+++..+.++.++|..+.+...
T Consensus 40 ~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~-------~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 40 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFST-------HESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp HHHHHHHHHHSCEEEEEEETTTTEEEEEESS-------HHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred HHHHHHHHhcCCeEEEEEeCCCCEEEEEECC-------HHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 3455666655542 1 123455544 8999999999999999999999988765443
No 289
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.61 E-value=0.0067 Score=43.33 Aligned_cols=28 Identities=18% Similarity=0.238 Sum_probs=24.4
Q ss_pred CHHHHHHHHHhcCccccccccceeeeee
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
+.++|.+|+..+++..+.++.++|..+.
T Consensus 66 ~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 66 NVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp SHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 3899999999999999999999887654
No 290
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.56 E-value=0.013 Score=44.42 Aligned_cols=53 Identities=6% Similarity=-0.037 Sum_probs=35.2
Q ss_pred HHHHHhhhcCCCe-eee-------eeecccccccCCCCHHHHHHHHHhcC--ccccccccceeeeeeccc
Q psy3930 130 RFFSQLLQESPEI-EVS-------VFLKCNKLARLTHDPDDVVKALRKSK--LLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~l~-------~f~~F~~i~~~~~~~~~a~~Al~~~~--~~~~~~~~~~v~r~~~~~ 189 (299)
.-|+.++..++.+ .+. .|+.|.. .++|.+|++.++ +..+.++.++|..+.+..
T Consensus 46 ~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~-------~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 46 GEVISLGLPFGKVTNLLMLKGKNQAFIEMNT-------EEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp HHHHHHHTTTSCCCEEEEEGGGTEEEEECSC-------HHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred HHHHHHHHhcCCEEEEEEeCCCCEEEEEECC-------HHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 3456666666541 111 3455544 789999998776 468999999999876544
No 291
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.48 E-value=0.29 Score=35.12 Aligned_cols=32 Identities=16% Similarity=0.018 Sum_probs=27.5
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
+.++|.+|+..+++..+.++.++|.++.+...
T Consensus 64 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 64 NSADADRAREKLHGTVVEGRKIEVNNATARVM 95 (103)
T ss_dssp CHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEcccCCC
Confidence 38999999999999999999999998776543
No 292
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.46 E-value=0.0088 Score=41.77 Aligned_cols=49 Identities=18% Similarity=0.158 Sum_probs=34.1
Q ss_pred HHHHHhhhcCCCee-e-------eeeecccccccCCCCHHHHHHHHHhc-Cccccccccceeeee
Q psy3930 130 RFFSQLLQESPEIE-V-------SVFLKCNKLARLTHDPDDVVKALRKS-KLLEVTEDGTKVRRT 185 (299)
Q Consensus 130 ~fl~~~~~~~~~~~-l-------~~f~~F~~i~~~~~~~~~a~~Al~~~-~~~~~~~~~~~v~r~ 185 (299)
.-|..++..++.+. + -.|++|.+ .++|.+|+..+ ++..+.++.++|+++
T Consensus 27 ~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~-------~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 27 TDLRNHFYQFGEIRTITVVQRQQCAFIQFAT-------RQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp HHHHHHHHTTSCEEEEEEEGGGTEEEEEESS-------HHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred HHHHHHHHhCCCEeEEEEECCCCEEEEEECC-------HHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 34666666666521 1 23455544 89999999988 999999998888764
No 293
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=92.40 E-value=0.0098 Score=40.45 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=21.2
Q ss_pred CHHHHHHHHHhcCccccccccceeee
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRR 184 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r 184 (299)
+.++|.+|++ +++..+.++.++|++
T Consensus 50 ~~~~a~~a~~-~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 50 SEDIVEKVCE-IHFHEINNKMVECKK 74 (75)
T ss_dssp CHHHHHHHHS-SSCCCSSSCCCEEEC
T ss_pred CHHHHHHHHH-CCCCEECCEEEEEEe
Confidence 3788999996 899999999988865
No 294
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.40 E-value=0.0084 Score=44.06 Aligned_cols=29 Identities=7% Similarity=-0.107 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
.+.++|.+|+. +++..+.++.+.|.++..
T Consensus 60 ~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 60 DSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp SSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 34899999997 899999999999987653
No 295
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=92.39 E-value=0.008 Score=42.52 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 160 PDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 160 ~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
.+ |.+|+..+++..+.++.++|.++.+..
T Consensus 53 ~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 53 ES-VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp TH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred HH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 67 999999999999999999999876543
No 296
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=92.37 E-value=0.0086 Score=43.32 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=36.5
Q ss_pred HHHHHhhhcCCCe---e---eeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 130 RFFSQLLQESPEI---E---VSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 130 ~fl~~~~~~~~~~---~---l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
.-|..++..++.+ . +-.|+.|.. .++|.+|+..+++..+.++.++|..+.+
T Consensus 38 ~~L~~~F~~~G~v~~v~i~~g~afV~f~~-------~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 38 EDLFRIFSPYGHIMQINIKNAFGFIQFDN-------PQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp HHHHHHHGGGSCEEEEEECSSEEEEEESS-------HHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred HHHHHHHHhcCCEEEEEEeCCEEEEEECC-------HHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 3466666666652 1 123556655 8999999999999999999999887653
No 297
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=92.36 E-value=0.012 Score=46.28 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=30.5
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
.|++|.+ .++|.+||..+++..+.+..++|..+.+..
T Consensus 84 afV~f~~-------~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 84 CFVEYYS-------RADAENAMRYINGTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp EEEEESS-------HHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred EEEEECC-------HHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 3555554 899999999999999999999999887544
No 298
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=92.28 E-value=0.0082 Score=42.89 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=24.1
Q ss_pred CHHHHHHHHHhcCccccccccceeeeee
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
+.++|.+|+..+++..+.++.++|..+.
T Consensus 66 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 66 HPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp STHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 3799999999999999999999887653
No 299
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=92.27 E-value=0.0087 Score=43.84 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=24.4
Q ss_pred CHHHHHHHHHhcCccccccccceeeeee
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
+.++|.+|++.+++..+.++.++|..+.
T Consensus 79 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 79 RKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4899999999999999999999887653
No 300
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.25 E-value=0.012 Score=46.05 Aligned_cols=30 Identities=20% Similarity=0.157 Sum_probs=26.1
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
+.++|.+|+..+++..+.++.++|..+.+.
T Consensus 119 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 119 DPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 489999999999999999999999877643
No 301
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.24 E-value=0.014 Score=39.82 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.3
Q ss_pred CHHHHHHHHHhcCccccccccceeeee
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRT 185 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~ 185 (299)
+.++|.+|+..++ ..+.++.++|+++
T Consensus 51 ~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 51 DQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4789999999999 8999999888764
No 302
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=92.19 E-value=0.014 Score=45.04 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=30.4
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
.|+.|.+ .++|.+|+..+++..+.++.++|.++.+..
T Consensus 92 afV~F~~-------~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 92 AFVRFHD-------KRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp CEEECSC-------HHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred EEEEECC-------HHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 4555554 899999999999999999999999876543
No 303
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.11 E-value=0.014 Score=43.61 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHhcC--ccccccccceeeeeeccc
Q psy3930 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 158 ~~~~~a~~Al~~~~--~~~~~~~~~~v~r~~~~~ 189 (299)
.+.++|.+|++.++ ...+.++.++|.++.+..
T Consensus 70 ~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 70 ETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYK 103 (112)
T ss_dssp SSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred CCHHHHHHHHHHhccCCceECCEEEEEEECcccc
Confidence 44889999998764 467899999998876543
No 304
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.03 E-value=0.012 Score=42.42 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=38.0
Q ss_pred HHHHHhhhcC--CCe---ee---eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 130 RFFSQLLQES--PEI---EV---SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 130 ~fl~~~~~~~--~~~---~l---~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
.-|..++..+ +.+ .+ -.|+.|.+ .++|.+|+..+++..+.++.++|..+.+..
T Consensus 30 ~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~-------~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 30 EMIEKEFNNIKPGAVERVKKIRDYAFVHFSN-------REDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp HHHHHHHHTTSTTCEEEEEECSSEEEEEESS-------HHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred HHHHHHHHhcCCcceEEEEEeCCeEEEEeCC-------HHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 3466666666 431 11 33666655 899999999999999999999998876544
No 305
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.01 E-value=0.011 Score=43.05 Aligned_cols=30 Identities=10% Similarity=0.019 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 160 PDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 160 ~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
.++|.+|+.. ++..+.++.++|.++.+...
T Consensus 68 ~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 68 PNCVGTVLAS-RPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp TTHHHHHHHH-CSEEETTEEEBCCCSCCSSC
T ss_pred HHHHHHHHHh-CCCeECCEEEEEEEccCCCC
Confidence 7899999988 99999999999988776544
No 306
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=92.00 E-value=0.014 Score=42.68 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=29.6
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCcccc---ccccceeeeeecccC
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEV---TEDGTKVRRTVVVQD 190 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~---~~~~~~v~r~~~~~~ 190 (299)
.|+.|.. .++|.+|++.+++..+ .+..++|.++.+...
T Consensus 58 afV~f~~-------~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 58 AFLTYCE-------RESALKAQSALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp EEEEESS-------HHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred EEEEECC-------HHHHHHHHHHhcCCcccCCCCceEEEEECCcccc
Confidence 4566655 8999999999999887 788899988765443
No 307
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.96 E-value=0.46 Score=34.01 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=31.8
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
-.|+.|.. .++|.+|+..+++..+.++.++|..+.+...
T Consensus 57 ~afV~f~~-------~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 57 FGFVCFSS-------PEEATKAVTEMNGRIVATKPLYVALAQRKEE 95 (103)
T ss_dssp EEEEEESS-------HHHHHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred EEEEEECC-------HHHHHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence 34666655 8999999999999999999999998776544
No 308
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.94 E-value=0.011 Score=43.80 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=27.0
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
+.++|.+|++.+++..+.++.++|..+.+..
T Consensus 72 ~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 72 RSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp SHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred cHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 4899999999999999999999998876544
No 309
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=91.85 E-value=0.013 Score=42.26 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=28.1
Q ss_pred eeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeee
Q psy3930 144 VSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRT 185 (299)
Q Consensus 144 l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~ 185 (299)
+-.|+.|.. .++|.+|++.+++..+.++.++|..+
T Consensus 64 G~afV~f~~-------~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 64 GEATVSFDD-------PPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp EEEEEEBSS-------HHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred eEEEEEECC-------HHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 344566655 89999999999999999999988764
No 310
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.79 E-value=0.019 Score=42.47 Aligned_cols=32 Identities=16% Similarity=0.008 Sum_probs=27.4
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
+.++|.+|+..+++..+.++.++|.++.+...
T Consensus 74 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 74 DPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred CHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence 38999999999999999999999988765543
No 311
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=91.74 E-value=0.0092 Score=42.01 Aligned_cols=28 Identities=18% Similarity=0.036 Sum_probs=24.4
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
+.++|.+|+ .+++..+.++.++|.++.+
T Consensus 57 ~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 57 DKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp STHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 478999999 9999999999999987654
No 312
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.71 E-value=0.0066 Score=42.46 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHhcCccccccccceeeee
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRT 185 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~ 185 (299)
.+.++|.+|++.+++..+.++.+++.+.
T Consensus 55 ~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 55 DSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp SCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 3489999999999999999988887654
No 313
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=91.70 E-value=0.023 Score=41.16 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
.+.++|.+|+ .+++..+.++.++|..+.+.
T Consensus 69 ~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 69 EDLDSLLSAL-SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp CCHHHHHHHH-HTTTCCBTTBCCCCEECCCS
T ss_pred CCHHHHHHHH-hcCCCEECCeEEEEEeccCC
Confidence 3489999999 89999999999999877643
No 314
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=91.68 E-value=0.017 Score=43.09 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=30.9
Q ss_pred HHHHHhhhcCCCe-e------eeeeecccccccCCCCHHHHHHHHHhcCccccccccce
Q psy3930 130 RFFSQLLQESPEI-E------VSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTK 181 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~------l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~ 181 (299)
.-|..++..++.+ . .-.|++|.+ .++|.+||+.+++..+.+..++
T Consensus 31 ~~l~~~F~~~G~v~~~~i~~~g~afV~f~~-------~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 31 QDLKDHMREAGDVCYADVYRDGTGVVEFVR-------KEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp THHHHHHGGGSCEEEEEECTTSEEEEEESS-------HHHHHHHHHHHTTCBCCCTTSC
T ss_pred HHHHHHHHhcCCeEEEEEecCCEEEEEECC-------HHHHHHHHHHhCCCEECCcEee
Confidence 3466666666642 1 123455544 8999999999999999998843
No 315
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.64 E-value=0.027 Score=40.64 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=31.1
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
-.|+.|.. .++|.+|+..+++..+.++.++|..+.+..
T Consensus 55 ~afV~f~~-------~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 55 YAFIEFAS-------FEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp EEEEECSS-------HHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred EEEEEECC-------HHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 44666655 899999999999999999999998876543
No 316
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.30 E-value=0.017 Score=42.00 Aligned_cols=31 Identities=10% Similarity=0.067 Sum_probs=26.6
Q ss_pred CHHHHHHHHHhcCccc-cccccceeeeeeccc
Q psy3930 159 DPDDVVKALRKSKLLE-VTEDGTKVRRTVVVQ 189 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~-~~~~~~~v~r~~~~~ 189 (299)
+.++|.+|++.+++.. +.++.++|..+.+..
T Consensus 60 ~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 60 DELEQKRALTECQGAVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp CHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCC
T ss_pred CHHHHHHHHHHccCCcccCCEeEEEEEccCCC
Confidence 3899999999999999 999999998876544
No 317
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.28 E-value=0.12 Score=37.35 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=32.1
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
-.|+.|.. .++|.+|++.+++..+.++.++|..+....+
T Consensus 48 ~AfV~F~~-------~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 48 SAILRFIN-------QDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp CEEEEESS-------HHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred EEEEEECC-------HHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 44666665 7999999999999999999999988765443
No 318
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.22 E-value=0.021 Score=41.77 Aligned_cols=52 Identities=6% Similarity=0.017 Sum_probs=34.6
Q ss_pred HHHHhhhcCCCee-e-------eeeecccccccCCCCHHHHHHHHHhc--Cccccccccceeeeeeccc
Q psy3930 131 FFSQLLQESPEIE-V-------SVFLKCNKLARLTHDPDDVVKALRKS--KLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 131 fl~~~~~~~~~~~-l-------~~f~~F~~i~~~~~~~~~a~~Al~~~--~~~~~~~~~~~v~r~~~~~ 189 (299)
-|..++..++.+. + -.|+.|.. .++|.+|++.+ ++..+.++.++|..+.+..
T Consensus 31 ~L~~~F~~fG~v~~v~i~~~kg~aFVef~~-------~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 31 EVIALGLPFGKVTNILMLKGKNQAFLELAT-------EEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp HHHHTTTTTSCEEEEEEETTTTEEEEEESS-------HHHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred HHHHHHHhcCCEEEEEEECCCCEEEEEECC-------HHHHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 4556666666521 1 13555544 78999999865 5678999999998876543
No 319
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=91.22 E-value=0.026 Score=42.56 Aligned_cols=38 Identities=13% Similarity=-0.002 Sum_probs=30.7
Q ss_pred eeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 142 IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 142 ~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
-.+-.|+.|.. .++|.+||. +++..+.++.+.|.++.+
T Consensus 66 ~~G~afV~F~~-------~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 66 ATGEGFVEFRN-------EADYKAALC-RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp EEEEEEEEBSS-------SHHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred CCeEEEEEECC-------HHHHHHHHH-hCCCeECCcEEEEEECCH
Confidence 34456777766 789999998 999999999999987654
No 320
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=91.17 E-value=0.016 Score=46.17 Aligned_cols=31 Identities=13% Similarity=0.035 Sum_probs=26.8
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
+.++|.+||..+++..+.+..+.|.++.+..
T Consensus 123 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 123 THKQALAAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 4899999999999999999999998876544
No 321
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=91.16 E-value=0.095 Score=39.45 Aligned_cols=31 Identities=13% Similarity=-0.024 Sum_probs=27.0
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
+.++|.+|+..+++..+.+..++|.++.+..
T Consensus 82 ~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 82 KMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp SHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 3899999999999999999999998877554
No 322
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.11 E-value=0.016 Score=42.88 Aligned_cols=29 Identities=10% Similarity=-0.010 Sum_probs=25.3
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
+.++|.+|+..+++..+.+..++|..+..
T Consensus 65 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 65 QSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 38999999999999999999999987653
No 323
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=90.98 E-value=0.011 Score=44.26 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.6
Q ss_pred CHHHHHHHHHhcCccccccccceeeee
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRT 185 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~ 185 (299)
+.++|.+|++.+++..+.++.++|+.+
T Consensus 91 ~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 91 NPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp SSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 378999999999999999999888764
No 324
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=90.97 E-value=0.015 Score=46.08 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
.+.++|.+||..+++..+.++.++|..+.+
T Consensus 107 ~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 107 ASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp SCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred CCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 458999999999999999999999987754
No 325
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=90.77 E-value=0.018 Score=41.58 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=30.6
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
-.|+.|.+ .++|.+|++ +++..+.++.++|..+.+..
T Consensus 60 ~afV~f~~-------~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 60 FGYVDFES-------AEDLEKALE-LTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp EEEEEESS-------HHHHHHHHH-GGGCCBTTBCCEEECCSCCC
T ss_pred EEEEEECC-------HHHHHHHHh-cCCcEECCcEEEEEEcCCCC
Confidence 35777766 799999998 99999999999998876544
No 326
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.66 E-value=0.33 Score=34.49 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=26.9
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
+.++|.+|++.+++..+.++.++|..+.+..
T Consensus 61 ~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 61 NLQDAIGAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp SHHHHHHHHHHHTTEEETTEEEEEEECCCSS
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 3899999999999999999999998876543
No 327
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=90.56 E-value=0.017 Score=41.75 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=22.4
Q ss_pred CHHHHHHHHHhcCcc----ccccccceeeeee
Q psy3930 159 DPDDVVKALRKSKLL----EVTEDGTKVRRTV 186 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~----~~~~~~~~v~r~~ 186 (299)
+.++|.+|++.+++. .++|+.+.|..+.
T Consensus 62 ~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 62 SAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp SSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred CHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 378999999988875 4888888887764
No 328
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=90.56 E-value=0.023 Score=42.77 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=37.1
Q ss_pred HHHHHhhhcCCCee-e-------------eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 130 RFFSQLLQESPEIE-V-------------SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 130 ~fl~~~~~~~~~~~-l-------------~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
.-|..++..++.+. + -.|+.|.+ .++|.+|+ .+++..+.+..++|..+.+.
T Consensus 51 ~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-------~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 51 QDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAE-------RNSVDAAV-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp HHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESS-------HHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred HHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECC-------HHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence 45777777777521 2 23445544 88999999 89999999999999877643
No 329
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.54 E-value=0.71 Score=33.16 Aligned_cols=39 Identities=10% Similarity=-0.042 Sum_probs=31.6
Q ss_pred eeeecccccccCCCCHHHHHHHHHhc-CccccccccceeeeeecccC
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKS-KLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~-~~~~~~~~~~~v~r~~~~~~ 190 (299)
-.|+.|.+ .++|.+|+..+ ++..+.+..++|.++.+...
T Consensus 60 ~afV~f~~-------~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 60 FGFVDFIT-------KQDAKKAFNALCHSTHLYGRRLVLEWADSEVT 99 (107)
T ss_dssp EEEEEESS-------HHHHHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred eEEEEECC-------HHHHHHHHHHhccCCeECCCEEEEEeCCCCCC
Confidence 34666655 89999999999 89999999999998876544
No 330
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=90.48 E-value=0.019 Score=44.08 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=22.8
Q ss_pred CHHHHHHHHHhcCccccccccceeee
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRR 184 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r 184 (299)
+.++|.+|++.+++..+.++.++|+.
T Consensus 114 ~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 114 LAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 38999999999999999998888764
No 331
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=90.38 E-value=0.024 Score=42.74 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=26.6
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
+.++|.+|+..+++..+.++.++|..+.+..
T Consensus 85 ~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 85 RRADALKAMKQYKGVPLDGRPMDIQLVASQI 115 (124)
T ss_dssp SHHHHHHHHHHHTTEESSSCEEEEEEECCTT
T ss_pred CHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 3899999999999999999999998876543
No 332
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.38 E-value=0.021 Score=41.98 Aligned_cols=52 Identities=8% Similarity=0.016 Sum_probs=34.6
Q ss_pred HHHHHhhhcCCCee-ee-------eeecccccccCCCCHHHHHHHHHhcCc--cccccccceeeeeecc
Q psy3930 130 RFFSQLLQESPEIE-VS-------VFLKCNKLARLTHDPDDVVKALRKSKL--LEVTEDGTKVRRTVVV 188 (299)
Q Consensus 130 ~fl~~~~~~~~~~~-l~-------~f~~F~~i~~~~~~~~~a~~Al~~~~~--~~~~~~~~~v~r~~~~ 188 (299)
.-|+.++..++.+. +. .|+.|.. .++|.+|++.+++ ..+.++.++|..+.+.
T Consensus 30 ~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~-------~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 30 ADLVEALEKFGTICYVMMMPFKRQALVEFEN-------IDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp HHHHHHHTTTSCEEEEEEETTTTEEEEEESS-------HHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred HHHHHHHHhCCCEEEEEEECCCCEEEEEECC-------HHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 34666666666522 11 3455544 7899999987754 5689999999887643
No 333
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=90.32 E-value=0.092 Score=39.98 Aligned_cols=36 Identities=0% Similarity=-0.051 Sum_probs=29.8
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
.|+.|.. .++|..|+..+++..+.++.++|.++.+.
T Consensus 75 aFV~F~~-------~~~A~~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 75 AYIVFAT-------QESAQAFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp EEEEESS-------HHHHHHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred EEEEECC-------HHHHHHHHHHHCCCEeCCCEEEEEEccCc
Confidence 4555554 89999999999999999999999887643
No 334
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.30 E-value=0.37 Score=33.97 Aligned_cols=36 Identities=19% Similarity=0.070 Sum_probs=30.5
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
.|+.|.. .++|.+|+..+++..+.++.++|..+.+.
T Consensus 57 afV~f~~-------~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 57 VNVTYSS-------KDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp EEEEESS-------HHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred EEEEECC-------HHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 5666665 78999999999999999999999887654
No 335
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.21 E-value=0.12 Score=36.89 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=37.3
Q ss_pred HHHHhhhcCCCe-ee-------eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 131 FFSQLLQESPEI-EV-------SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 131 fl~~~~~~~~~~-~l-------~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
-|..++..++.+ .+ -.|+.|.. .++|.+|+..+++..+.++.++|.++.+...
T Consensus 29 ~l~~~F~~~G~i~~v~i~~~~g~afV~f~~-------~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 29 LLRGAFSPFGNIIDLSMDPPRNCAFVTYEK-------MESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp HHHHHHTTTSCEEEEEEETTTTEEEEEESS-------HHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred HHHHHHhhCCCEEEEEecCCCCEEEEEECC-------HHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 456666666642 11 23455544 8999999999999999999999988765443
No 336
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.16 E-value=0.026 Score=41.97 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=26.2
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
+.++|.+||.. ++..+.++.++|.++.+...
T Consensus 78 ~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 78 SMAEVDAAMAA-RPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp SHHHHHHHHTS-CSEEETTEEEEEECCSSCCC
T ss_pred CHHHHHHHHHh-CCcEECCEEEEEEECCCCcc
Confidence 48999999987 99999999999988776544
No 337
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=90.07 E-value=0.026 Score=43.64 Aligned_cols=32 Identities=13% Similarity=0.069 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
.+.++|.+|+..+++..+.++.++|..+.+..
T Consensus 100 ~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 100 PNEKAAAKALKEANGYVLFGKPMVVQFARSAR 131 (143)
T ss_dssp SSHHHHHHHHHHHTTBEETTEECEEEECCCSC
T ss_pred CCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 34899999999999999999999998876543
No 338
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=89.91 E-value=0.037 Score=42.20 Aligned_cols=30 Identities=10% Similarity=0.055 Sum_probs=25.7
Q ss_pred CHHHHHHHHHhcCcc----ccccccceeeeeeccc
Q psy3930 159 DPDDVVKALRKSKLL----EVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~----~~~~~~~~v~r~~~~~ 189 (299)
+. +|.+|+..+++. .+.++.++|..+.+..
T Consensus 76 ~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 76 TI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp HH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSC
T ss_pred CH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCC
Confidence 37 899999999999 9999999998876543
No 339
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.89 E-value=0.56 Score=33.22 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=28.3
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCcccccccc----ceeeeeec
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDG----TKVRRTVV 187 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~----~~v~r~~~ 187 (299)
.|+.|.. .++|.+|+..+++..+.++. ++|.++.+
T Consensus 55 afV~f~~-------~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~ 93 (99)
T 2div_A 55 CFVEFAD-------LATAEKCLHKINGKPLPGATPAKRFKLNYATY 93 (99)
T ss_dssp EEEECSC-------HHHHHHHHHTTTTSEESSCSSCEECCEEETTC
T ss_pred EEEEeCC-------HHHHHHHHHHHcCCccCCCCcceeEEEeecCC
Confidence 4555654 89999999999999999998 88877654
No 340
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=89.83 E-value=0.014 Score=42.74 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=28.3
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccc-cceeeeeec
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTED-GTKVRRTVV 187 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~-~~~v~r~~~ 187 (299)
.|+.|.+ .++|.+|+..+++..+.++ .++|..+..
T Consensus 64 afV~f~~-------~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 64 IFLEYAS-------PAHAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp EEEEECS-------SSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred EEEEECC-------HHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence 4555555 7899999999999999998 889887653
No 341
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=89.77 E-value=0.022 Score=40.70 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=31.1
Q ss_pred eeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 144 VSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 144 l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
+-.|+.|.. .++|.+|+..+++..+.++.++|..+.+.
T Consensus 54 g~afV~f~~-------~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 54 GIAYIEFKS-------EADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp EEEEEEESS-------HHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred eEEEEEECC-------HHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 345667766 89999999999999999999999877644
No 342
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=89.53 E-value=0.028 Score=45.00 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=36.9
Q ss_pred HHHHHhhhcCCCe-eeee---------eecccccccCCCCHHHHHHHHHhcCcccccc--ccceeeeeecc
Q psy3930 130 RFFSQLLQESPEI-EVSV---------FLKCNKLARLTHDPDDVVKALRKSKLLEVTE--DGTKVRRTVVV 188 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~l~~---------f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~--~~~~v~r~~~~ 188 (299)
.-|..++..++.+ .+.+ |+.| .+.++|.+|++.+++..+.+ ..++|..+.+.
T Consensus 61 d~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF-------~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 61 DVLHQIFSKFGTVLKIITFTKNNQFQALLQY-------ADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp HHHHHHHHHHSCEEEEEEEESSSCEEEEEEE-------SCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred HHHHHHHHhcCCEEEEEEEeCCCCCEEEEEE-------CCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 4577777777762 2233 3333 45899999999999999966 78888877654
No 343
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.43 E-value=0.031 Score=41.50 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=24.7
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
+.++|.+|+..+++ .+.++.++|..+.+.
T Consensus 68 ~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 68 DRAAAERACKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp SHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred CHHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence 48999999999998 899999999887543
No 344
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=89.18 E-value=0.027 Score=47.59 Aligned_cols=30 Identities=10% Similarity=-0.065 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
.+.++|.+||+.+++..+.++.++|..+.+
T Consensus 120 ~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 120 GSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp SCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred CCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 347899999999999999999999987654
No 345
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=89.14 E-value=0.035 Score=40.27 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=30.7
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
-.|+.|.. .++|.+|+ .+++..+.++.++|..+.+...
T Consensus 58 ~afV~f~~-------~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 58 FCYVEFDE-------VDSLKEAL-TYDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp EEEEEESS-------HHHHHHHG-GGTTCEETTEECEEEECCCCCC
T ss_pred EEEEEECC-------HHHHHHHH-hhCCCeECCeEEEEEEecCCCC
Confidence 45666655 89999999 8999999999999988775543
No 346
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=89.09 E-value=0.03 Score=41.26 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
.+.++|.+|+..++ ..+.++.++|..+.+..
T Consensus 75 ~~~~~A~~Ai~~~~-~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 75 MDQAGVDKVLAQSR-HELDSKTIDPKVAFPRR 105 (109)
T ss_dssp SSHHHHHHHHHSSC-EEETTEEEEEEECCCCC
T ss_pred CCHHHHHHHHHHCC-CcCCCEEEEEEEccCCC
Confidence 34899999998765 88999999998876544
No 347
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.07 E-value=0.053 Score=40.62 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=25.8
Q ss_pred HHHHHhhhcCCCeee-e-------eeecccccccCCCCHHHHHHHHHhcCcccc
Q psy3930 130 RFFSQLLQESPEIEV-S-------VFLKCNKLARLTHDPDDVVKALRKSKLLEV 175 (299)
Q Consensus 130 ~fl~~~~~~~~~~~l-~-------~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~ 175 (299)
.-|+.++..++.+.- . .|++|. +.++|.+|++.+|+.++
T Consensus 42 ~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~-------~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 42 NQLLPVLEKCGLVDALLMPPNKPYSFARYR-------TTEESKRAYVTLNGKEV 88 (114)
T ss_dssp HHHHHHHHHHSCEEEEECCTTCSCEEEEES-------SHHHHHHHHHHTTTCEE
T ss_pred HHHHHHHHhcCCeEEEEEeCCCCEEEEEEC-------CHHHHHHHHHHhCCCEE
Confidence 446666666665221 1 244443 48999999999999887
No 348
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=88.93 E-value=0.09 Score=48.83 Aligned_cols=31 Identities=10% Similarity=-0.008 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 158 ~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
.+.++|.+||..+++..|.+..+.|..+.+.
T Consensus 152 ~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 152 EHERDMHSAYKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred ccHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence 4588999999999999999999999887643
No 349
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=88.82 E-value=0.028 Score=38.05 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCccccccccceeee
Q psy3930 160 PDDVVKALRKSKLLEVTEDGTKVRR 184 (299)
Q Consensus 160 ~~~a~~Al~~~~~~~~~~~~~~v~r 184 (299)
.++|.+|++. ++..+.++.+.|++
T Consensus 51 ~~~a~~Ai~~-~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 51 EEPVKKIMEK-KYHNVGLSKCEIKV 74 (75)
T ss_dssp SHHHHHHHTT-SSCCBTTBCCCEEE
T ss_pred HHHHHHHHHh-CCCeECCEEEEEEE
Confidence 7899999975 77889999888765
No 350
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=88.75 E-value=0.046 Score=44.20 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=26.3
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
+.++|.+|++.+++..+.+..++|..+.+.
T Consensus 138 ~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 138 RRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp CHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 489999999999999999999999887644
No 351
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=88.46 E-value=0.028 Score=43.21 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=36.8
Q ss_pred HHHHHhhhcCCCe-eee---------eeecccccccCCCCHHHHHHHHHhcCcccccc--ccceeeeeec
Q psy3930 130 RFFSQLLQESPEI-EVS---------VFLKCNKLARLTHDPDDVVKALRKSKLLEVTE--DGTKVRRTVV 187 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~l~---------~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~--~~~~v~r~~~ 187 (299)
.-|..++..++.+ .+. .|+.| .+.++|.+|++.+++..+.+ ..++|..+++
T Consensus 43 ~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef-------~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 43 DVLHQIFSKFGTVLKIITFTKNNQFQALLQY-------ADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp HHHHHHHTTSSCEEEEEEEEETTEEEEEEEE-------SCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred HHHHHHHhCcCCEEEEEEEcCCCCcEEEEEE-------CCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 4578888888862 223 23333 45899999999999999988 6677777654
No 352
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.38 E-value=0.042 Score=40.57 Aligned_cols=21 Identities=0% Similarity=-0.118 Sum_probs=17.0
Q ss_pred CHHHHHHHHHhcCcccccccc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDG 179 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~ 179 (299)
+.++|.+|+..+++..+.+..
T Consensus 75 ~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 75 STEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp CHHHHHHHHHHHBTCCCCCCT
T ss_pred CHHHHHHHHHHhCCCEEcCCc
Confidence 389999999999998885433
No 353
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.33 E-value=0.017 Score=42.89 Aligned_cols=29 Identities=10% Similarity=-0.083 Sum_probs=24.8
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
+.++|.+|+ .+++..+.++.++|..+.+.
T Consensus 76 ~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 76 EIQSVPLAI-GLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp CGGGHHHHH-HHTTEEETTEEEEEEEHHHH
T ss_pred cHHHHHHHH-HcCCCEeCCeEEEEEecCCC
Confidence 478999999 99999999999999876543
No 354
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.25 E-value=1.1 Score=31.62 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=26.8
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
+.++|.+|+..+++..+.++.++|.++.+..
T Consensus 59 ~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 59 KPEQAQKALKQLQGHTVDGHKLEVRISERAT 89 (98)
T ss_dssp SHHHHHHHHHHSTTCEETTEECEEECSSCSS
T ss_pred CHHHHHHHHHHhCCCeeCCeEEEEEEccCCC
Confidence 3899999999999999999999998876544
No 355
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.10 E-value=0.038 Score=40.13 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=30.4
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
-.|+.|.. .++|.+|+ .+++..+.++.++|..+.+...
T Consensus 59 ~afV~f~~-------~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 59 FGYAEFED-------LDSLLSAL-SLNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp CEEEEESS-------HHHHHHHH-GGGTCEETTEECEEEECCCCCC
T ss_pred EEEEEECC-------HHHHHHHH-hcCCCEeCCcEEEEEEccCCCC
Confidence 34556655 89999999 9999999999999998776544
No 356
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.06 E-value=0.042 Score=40.20 Aligned_cols=32 Identities=16% Similarity=-0.000 Sum_probs=26.5
Q ss_pred CHHHHHHHHHhcC--ccccccccceeeeeecccC
Q psy3930 159 DPDDVVKALRKSK--LLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 159 ~~~~a~~Al~~~~--~~~~~~~~~~v~r~~~~~~ 190 (299)
+.++|.+|+..++ +..+.++.++|..+.+...
T Consensus 61 ~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 61 SHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp SHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred CHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 3899999999885 5899999999998876543
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.01 E-value=0.22 Score=36.60 Aligned_cols=38 Identities=3% Similarity=-0.116 Sum_probs=31.0
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
-.|+.|.. .++|.+|+..+++..+.++.++|..+.+..
T Consensus 66 ~afV~f~~-------~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 66 VASVSFRD-------PEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp EEEEECSC-------HHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred EEEEEECC-------HHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 34666655 899999999999999999999998876543
No 358
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=87.91 E-value=0.16 Score=35.98 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=29.6
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
.|+.|.+ .++|.+|+..+++..+.++.++|..+.+.
T Consensus 54 afV~f~~-------~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 54 AFVIFKE-------VSSATNALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp EEEEESS-------HHHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred EEEEeCC-------HHHHHHHHHHhCCCEECCcEEEEEEccCC
Confidence 4566655 89999999999999999999999887654
No 359
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=87.69 E-value=0.032 Score=38.97 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=19.6
Q ss_pred CHHHHHHHHHhcCccccccccceeee
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRR 184 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r 184 (299)
+.++|.+|++. ++..+.++.+.|++
T Consensus 62 ~~~~a~~A~~~-~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 62 DAASVEKVLDQ-KEHRLDGRVIDPKK 86 (87)
T ss_dssp STHHHHHHHHS-SCEEETTEEEEEEE
T ss_pred CHHHHHHHHHh-CCCEECCEEEEEEe
Confidence 37899999955 66678888888765
No 360
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=87.66 E-value=0.04 Score=38.74 Aligned_cols=28 Identities=7% Similarity=0.032 Sum_probs=24.8
Q ss_pred CHHHHHHHHHhcCccccccccceeeeee
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
+.++|.+|++.+++..+.++.++|..+.
T Consensus 49 ~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 49 NGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 3899999999999999999999998764
No 361
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.65 E-value=0.6 Score=33.25 Aligned_cols=34 Identities=6% Similarity=0.036 Sum_probs=28.8
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
.|++|.. .++|.+|++ +++..+.++.++|+.+.+
T Consensus 52 ~fVtF~d-------~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 52 MWVTFLE-------GSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp EEEEESS-------HHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred EEEEECC-------hHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 5777766 789999996 999999999999987654
No 362
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=87.42 E-value=0.025 Score=39.45 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=25.8
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeee
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRR 184 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r 184 (299)
.|+.|.+ .++|.+|+ .+++..+.++.++|+|
T Consensus 56 afV~f~~-------~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 56 AFLEFRS-------VDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp EEEEESS-------HHHHHHHG-GGTTCEETTEECEEEC
T ss_pred EEEEcCC-------HHHHHHHH-hcCCCEECCeEEEEeC
Confidence 3556655 89999999 9999999999998875
No 363
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=86.52 E-value=0.18 Score=34.51 Aligned_cols=31 Identities=19% Similarity=0.401 Sum_probs=25.0
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccc-ccee
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTED-GTKV 182 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~-~~~v 182 (299)
-.|+.|.. .++|.+|++.+++..+.++ .++|
T Consensus 49 ~afV~f~~-------~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 49 YIFLEYAS-------PAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp EEEEEESS-------HHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred EEEEEECC-------HHHHHHHHHHhcCcccCCceeEEe
Confidence 34566655 8999999999999999998 7765
No 364
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.10 E-value=0.21 Score=35.83 Aligned_cols=33 Identities=9% Similarity=0.186 Sum_probs=28.7
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
.|++|.. .++|.+||+ +++.++.++.++|+.+.
T Consensus 61 ~fVtF~d-------~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 61 MLVTFAD-------SHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp EEEECSC-------SHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred EEEEEcC-------hHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 6888876 789999997 99999999999998654
No 365
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=85.76 E-value=0.08 Score=38.70 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=28.0
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
-.|+.|.+ .++|.+||. +++..+.++.++|.++.+
T Consensus 57 ~afV~F~~-------~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 57 DALIEMES-------EQDVQKALE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp EEEEEBSS-------HHHHHHHHT-TTTCCSSSSCCCCEECCH
T ss_pred EEEEEECC-------HHHHHHHHH-hCcceeCCeEEEEEECCH
Confidence 45666655 899999998 899999999998877654
No 366
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=85.44 E-value=0.064 Score=41.43 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=27.9
Q ss_pred eeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 144 VSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 144 l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
+-.|+.|.+ .++|.+||+ +++..+.++.++|.++.
T Consensus 89 G~aFV~F~~-------~e~a~~Al~-~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 89 GEAFVELGS-------EDDVKMALK-KDRESMGHRYIEVFKSH 123 (136)
T ss_dssp EEEEEECSS-------HHHHHHHHT-TTEEESSSSEEEEEECC
T ss_pred eEEEEEECC-------HHHHHHHHh-cCCCEECCEEEEEEECC
Confidence 345666655 899999998 99999999998887654
No 367
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.42 E-value=2.1 Score=29.87 Aligned_cols=28 Identities=11% Similarity=-0.031 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 160 PDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 160 ~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
.++|.+|+. +++..+.++.+.|..+.+.
T Consensus 55 ~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 55 VGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp HHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred HHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 889999998 9999999999999876543
No 368
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=85.32 E-value=0.33 Score=36.09 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=30.4
Q ss_pred eeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 144 VSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 144 l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
+-.|+.|.. .++|.+|++.+|+..+.|+.+.+....
T Consensus 56 G~~fV~f~~-------~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 56 GNVYVKCPS-------IAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp CCEEEECSS-------HHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEEEECC-------HHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 456777766 799999999999999999999887654
No 369
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.90 E-value=0.094 Score=37.83 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=26.8
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
.|+.|.+ .++|.+|+.. +..+.++.+.|..+.+...
T Consensus 60 afV~f~~-------~~~a~~A~~~--~~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 60 GFVRFTE-------YETQVKVMSQ--RHMIDGRWCDCKLPNSKQS 95 (103)
T ss_dssp EEEEESS-------HHHHHHHHHS--CEEETTEEEEEECCCTTCC
T ss_pred EEEEECC-------HHHHHHHHHc--CCeeCCeEEEEEecCCCCc
Confidence 4555554 8899999974 5688999999988776543
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=84.37 E-value=0.31 Score=35.46 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=27.8
Q ss_pred eeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeee
Q psy3930 144 VSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRT 185 (299)
Q Consensus 144 l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~ 185 (299)
+-.|+.|.+ .++|.+|+..+++..+.++.+++..+
T Consensus 69 G~~fV~f~~-------~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 69 GNVYVKFRR-------EEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp EEEEEEESC-------HHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred EEEEEEECC-------HHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 344556655 89999999999999999998887653
No 371
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=84.30 E-value=3 Score=39.31 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=42.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 197 ~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
..++|+ +|..+...+|.++|+.||. ..|+.+.+. .|||.|.+.+.|..++..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~ 492 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNT 492 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHH
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHH
Confidence 455555 9999999999999999995 455555442 599999999999999998
No 372
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=83.54 E-value=0.078 Score=39.62 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=29.3
Q ss_pred eeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 142 IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 142 ~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
-.+-.|+.|.+ .++|.+||. +++..+.++.++|..+.
T Consensus 60 ~~G~afV~F~~-------~~~a~~Al~-~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 60 QSGEAFVELES-------EDDVKLALK-KDRESMGHRYIEVFKSH 96 (118)
T ss_dssp EEEEEEEEBSS-------HHHHHHHGG-GTTEEETTEEEEEEEEC
T ss_pred CCeEEEEEECC-------HHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 34456777766 899999998 89999999998887664
No 373
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.45 E-value=0.15 Score=37.05 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=23.8
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
+.++|.+||.. ++..+.++.+.|.++.+
T Consensus 66 ~~~~a~~A~~~-~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 66 SQEIAEKALKK-HKERIGHRYIEIFKSSR 93 (104)
T ss_dssp SHHHHHHHHTT-TTCCSSSSCCEEEEECT
T ss_pred CHHHHHHHHHh-CcchhCCcEEEEEECCH
Confidence 38999999987 89999999999977654
No 374
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.07 E-value=0.91 Score=32.28 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=34.4
Q ss_pred eeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecccC
Q psy3930 142 IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQD 190 (299)
Q Consensus 142 ~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~~ 190 (299)
-..-.|+.|.+ .++|.+|+..+++..+.++.++|..+.+..+
T Consensus 53 ~~g~afV~f~~-------~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 53 SKGFGFVDFNS-------EEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp EEEEEEEECSS-------HHHHHHHHHHHTTCEETTEECEEEECCCCCS
T ss_pred cCcEEEEEECC-------HHHHHHHHHHhCCCeECCeEEEEEEecCCCC
Confidence 34456788876 7999999999999999999999998876544
No 375
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.07 E-value=1.7 Score=31.78 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=28.8
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
-.|+.|.+ .++|.+||.. ++..+.++.+.|.++.+.
T Consensus 59 ~afV~F~~-------~~~a~~Al~~-~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 59 QALVQFKN-------EDDARKSERL-HRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp CEEEECSS-------HHHHHHHGGG-CSEEETTEEEEEEEECHH
T ss_pred EEEEEECC-------HHHHHHHHHh-CCCccCCeEEEEEECCHH
Confidence 45666665 8999999977 999999999999877643
No 376
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.37 E-value=1.6 Score=30.27 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=31.9
Q ss_pred eeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 142 IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 142 ~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
-.+-.|+.|.. .++|.+|+. +++..+.++.++|..+.+.
T Consensus 49 ~~g~afV~f~~-------~~~a~~A~~-~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 49 KTGYIFVDFSN-------EEEVKQALK-CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp EEEEEEEECSS-------HHHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred CceEEEEEECC-------HHHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence 34456777766 899999999 9999999999999887654
No 377
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.11 E-value=3.8 Score=29.23 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=29.9
Q ss_pred eeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeecc
Q psy3930 142 IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188 (299)
Q Consensus 142 ~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~ 188 (299)
-..-.|+.|.+ .++|.+|| .+++..+.++.++|..+.+.
T Consensus 54 ~~G~afV~F~~-------~~~a~~Al-~~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 54 VTGEADVEFAT-------HEDAVAAM-AKDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp EEEEEEEECSS-------SHHHHHHH-TTSSCCSSSSCCEEEEECCC
T ss_pred EeeEEEEEECC-------HHHHHHHH-HhCCCeECCcEEEEEECCCC
Confidence 34456777766 78999999 57899999999998776543
No 378
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=77.28 E-value=0.073 Score=38.38 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=26.3
Q ss_pred eeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 146 VFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 146 ~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
.|+.|.+ .++|.+|+. ++..+++..+.|.++.+..
T Consensus 53 afV~f~~-------~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 53 GFVSFYN-------DVDVQKIVE--SQINFHGKKLKLGPAIRKQ 87 (102)
T ss_dssp EEEEESS-------CCCHHHHTT--CCCEETTEECEEEEEEECC
T ss_pred EEEEECC-------HHHHHHHHh--CCCeECCEEEEEEECCcCc
Confidence 4556655 678889997 8888999999888776443
No 379
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=77.10 E-value=0.8 Score=38.82 Aligned_cols=52 Identities=12% Similarity=0.038 Sum_probs=35.1
Q ss_pred HHHHHhhhcCCCe-ee-------eeeecccccccCCCCHHHHHHHHHhcCcccc------------ccccceeeeeecc
Q psy3930 130 RFFSQLLQESPEI-EV-------SVFLKCNKLARLTHDPDDVVKALRKSKLLEV------------TEDGTKVRRTVVV 188 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~l-------~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~------------~~~~~~v~r~~~~ 188 (299)
.-|+.++..+|.+ .+ -.|++|.. .++|..|++.+++..+ .++.+.|+++.+.
T Consensus 158 e~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~-------~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 158 SRIRFVFSRLGDIDRIRYVESKNCGFVKFKY-------QANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HHHHHHHHTTSCEEEEEEEGGGTEEEEEESS-------HHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred HHHHHHHHccCCEEEEEEECCCCEEEEEeCC-------HHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 3455566666652 11 13555544 8999999999999888 7888999887644
No 380
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=77.03 E-value=1.7 Score=31.51 Aligned_cols=38 Identities=16% Similarity=0.102 Sum_probs=31.0
Q ss_pred eeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 143 EVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 143 ~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
.+-.|+.|.+ .++|.+|++.+++..+.++.+.+..+.+
T Consensus 56 ~G~~FV~f~~-------~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 56 AVRIFLEFER-------VESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp SEEEEEEESS-------HHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred cEEEEEEECC-------HHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 3455677766 8999999999999999999998887653
No 381
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=76.64 E-value=4.4 Score=30.39 Aligned_cols=52 Identities=6% Similarity=0.008 Sum_probs=35.3
Q ss_pred HHHHHhhhcCCCe-eeee--------eecccccccCCCCHHHHHHHHHhcCccccccc--cceeeeeecc
Q psy3930 130 RFFSQLLQESPEI-EVSV--------FLKCNKLARLTHDPDDVVKALRKSKLLEVTED--GTKVRRTVVV 188 (299)
Q Consensus 130 ~fl~~~~~~~~~~-~l~~--------f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~--~~~v~r~~~~ 188 (299)
.-|..++..++.+ .+.+ |+.| .+.++|..|++.+++.++.+. .++|..+.+.
T Consensus 40 ~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef-------~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 40 DVLYTVCNPVGKVQRIVIFKRNGIQAMVEF-------ESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp HHHHHHHTTTSCEEEEEEEESSSEEEEEEE-------SSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred HHHHHHHHhcCCEEEEEEEeCCCCEEEEEE-------CCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 3466777777762 2233 3333 358999999999999999874 6777766543
No 382
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=76.43 E-value=1.7 Score=31.47 Aligned_cols=35 Identities=11% Similarity=0.051 Sum_probs=29.4
Q ss_pred eeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 145 SVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 145 ~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
-.|+.|.. .++|.+|++.+|+..+.++.+.+....
T Consensus 61 ~~fV~f~~-------~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 61 KIFVEFTS-------VFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp EEEEEESS-------HHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEEECC-------HHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 45666665 899999999999999999999887654
No 383
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=75.78 E-value=1.2 Score=36.11 Aligned_cols=48 Identities=10% Similarity=0.021 Sum_probs=35.0
Q ss_pred hccCCCEEeeeeecchhhh--hccCCHHHHHHHHhcCc--ceeeccCcceeeccc
Q psy3930 20 LQESPEIEVSVFLKCNKLA--RLTHDPDDVVKALRKSK--LLEVTEDGTKVKGNI 70 (299)
Q Consensus 20 ~~~~~~v~~~~~~~f~~~~--~~~~~~~~i~~a~~~s~--~~~v~~~~~~vrr~~ 70 (299)
|+.+|||+|..++. .+.+ ....+.+.|.+.+..++ -.+++++ +||-+-
T Consensus 24 ld~~G~v~v~~LL~-~~~~~~~~~~t~~~l~~vV~~~~K~Rf~l~~~--~IRA~q 75 (186)
T 1wfx_A 24 LTREGWARVSEVVE-GLRKAGWSWVEEWHIVGVALHDPKGRYELRNG--EIRARY 75 (186)
T ss_dssp CCTTCCEEHHHHHH-HHHHTTCTTCCHHHHHHHHHHCSSCCEEEETT--EEEESS
T ss_pred cCCCCCEEHHHHHh-hhhhcccCCCCHHHHHHHHhcCCCCceEeecc--EEEecc
Confidence 77899999999998 4433 23347888888888665 4777755 787754
No 384
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.19 E-value=0.2 Score=36.98 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=27.1
Q ss_pred eeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 144 VSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 144 l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
+-.|+.|.. .++|.+|| .+++..+.++.+.|..+.
T Consensus 57 G~afV~F~~-------~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 57 GNGLVKFLS-------PQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp SEEEEECSS-------HHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred eEEEEEECC-------HHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 345666665 89999999 788999999888886654
No 385
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=74.42 E-value=0.2 Score=38.69 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=23.5
Q ss_pred CHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
+.++|.+|| .+++..+.++.+.|..+.+
T Consensus 95 ~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 95 THEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp HHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred CHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 388999999 7899999999998877654
No 386
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=73.83 E-value=20 Score=25.09 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=53.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHhcCCCCCCCCCCceEEE
Q psy3930 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTT 273 (299)
Q Consensus 194 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~~lng~~~~~~g~~l~v 273 (299)
..+|-+-+-|+|..+-..++--.....|---+|..+. |.|.++|.+.++..-|++.++|- +...+.+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnh-----nnnklqi 76 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNH-----NNNKLQI 76 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEET-----TTTEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhc-----CCCEEEE
Confidence 3468888999999998888877777888767787653 34999999999999999986653 3455566
Q ss_pred Eee
Q psy3930 274 TSR 276 (299)
Q Consensus 274 ~~k 276 (299)
+++
T Consensus 77 eir 79 (129)
T 4eyt_A 77 EIR 79 (129)
T ss_dssp EET
T ss_pred EEc
Confidence 554
No 387
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.10 E-value=6.2 Score=29.41 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=25.9
Q ss_pred eeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 144 VSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 144 l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
+-.|+.|.+ .++|.+||+. ++..+.++.+.|.++.
T Consensus 69 G~aFV~F~~-------~~~A~~Al~~-~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 69 GDAFVLFAC-------EEYAQNALRK-HKDLLGKRYIELFRST 103 (123)
T ss_dssp EEEEECCSS-------HHHHHHHHTT-TTEESSSCEECCEEEC
T ss_pred eEEEEEECC-------HHHHHHHHHh-CCCeeCCeEEEEEECC
Confidence 345666655 8999999976 8888888887776554
No 388
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=71.64 E-value=3.2 Score=30.77 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=30.2
Q ss_pred eeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 144 VSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 144 l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
+-.|+.|.+ .++|.+|+..+|+..+.++.+.+....
T Consensus 72 G~~FV~F~~-------~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 72 VKIFVEFSI-------ASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp EEEEEEESS-------HHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred EEEEEEECC-------HHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 456777766 799999999999999999999887654
No 389
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=71.52 E-value=0.12 Score=39.71 Aligned_cols=23 Identities=17% Similarity=-0.048 Sum_probs=19.1
Q ss_pred HHHHHHH--hcCccccccccceeee
Q psy3930 162 DVVKALR--KSKLLEVTEDGTKVRR 184 (299)
Q Consensus 162 ~a~~Al~--~~~~~~~~~~~~~v~r 184 (299)
+|.+|+. .+++..++++.++|..
T Consensus 68 AA~kAi~~~~lng~~I~Gr~irV~l 92 (136)
T 2j8a_A 68 AAFSAVRKHESSGCFIMGFKFEVIL 92 (136)
T ss_dssp HHHHHHHHTTTTCEEETTEEEEEEE
T ss_pred HHHHHHHHhhhcCCeecCcEEEEEE
Confidence 3788988 6799999999988863
No 390
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.07 E-value=4 Score=29.31 Aligned_cols=28 Identities=7% Similarity=-0.054 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCccccccccceeeeeeccc
Q psy3930 160 PDDVVKALRKSKLLEVTEDGTKVRRTVVVQ 189 (299)
Q Consensus 160 ~~~a~~Al~~~~~~~~~~~~~~v~r~~~~~ 189 (299)
.++|..|++..++ +.++.++|.++.+.+
T Consensus 64 ~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 64 VKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp HHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred HHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 7899999988554 567888888765443
No 391
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=58.03 E-value=12 Score=28.02 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=27.9
Q ss_pred eeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeeec
Q psy3930 143 EVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVV 187 (299)
Q Consensus 143 ~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~~ 187 (299)
.+-.|+.|.+ .++|.+||+. ++..+.++.+.|.++.+
T Consensus 84 rGfaFV~F~~-------~e~A~~Al~~-~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 84 TGEAFVQFAS-------QELAEKALGK-HKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp CSEEEEEESS-------TTHHHHHHTT-TTCCBTTBCCCCEEECH
T ss_pred ceEEEEEECC-------HHHHHHHHHH-CCCEECCEEEEEEECCH
Confidence 3445677766 7899999975 66889999998877653
No 392
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.01 E-value=42 Score=23.27 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=39.9
Q ss_pred EEEecCCCCCCHHHHHHHhhc-CC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHHh
Q psy3930 199 IYVEKLPPEAEHDYIESVFSK-YG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257 (299)
Q Consensus 199 l~V~nLp~~~t~e~L~~~F~~-~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~~ 257 (299)
.|+--.+..++..++++..+. || .|..|+....+ .|.- -|||.+....+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~K--KA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGEK--KAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSCE--EEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCce--EEEEEcCCCCcHHHHHHh
Confidence 444456789999999999987 77 67777765443 4443 399999987777665544
No 393
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=44.77 E-value=18 Score=29.35 Aligned_cols=28 Identities=7% Similarity=-0.169 Sum_probs=24.5
Q ss_pred CHHHHHHHHHhcCccccccccceeeeee
Q psy3930 159 DPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 159 ~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
+.++|.+|+..+++..+.|+.+.+....
T Consensus 184 ~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 184 IASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp SHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred CHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4899999999999999999999887643
No 394
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=40.85 E-value=5.3 Score=40.08 Aligned_cols=75 Identities=21% Similarity=0.261 Sum_probs=50.6
Q ss_pred CeeecCCCCcCcChHHHHhh----ccC----CCEEeeeeecc-hhhhhccC--------CH----HHHHHHHhcCcceee
Q psy3930 1 MEFYLSDSNLRKDRFFSQLL----QES----PEIEVSVFLKC-NKLARLTH--------DP----DDVVKALRKSKLLEV 59 (299)
Q Consensus 1 ~e~yfs~~nl~~d~~l~~~~----~~~----~~v~~~~~~~f-~~~~~~~~--------~~----~~i~~a~~~s~~~~v 59 (299)
|.|.|||+=|....=|..++ .-+ |.||+++|+.+ -|+.+++. |+ ..|..|...++-+.+
T Consensus 115 ~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~~~~a~~~~~~~~~ 194 (950)
T 3htx_A 115 IKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISYVMKAAAKLADYIV 194 (950)
T ss_dssp HHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTHHHHHHHHHHHHHCCSSEE
T ss_pred HHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChHHHHHHHHHHhhcCCCcEE
Confidence 46889999877776555443 334 56999999988 45555442 22 357888887765558
Q ss_pred ccCcceeeccccccccccccc
Q psy3930 60 TEDGTKVKGNIIRHFLVPISM 80 (299)
Q Consensus 60 ~~~~~~vrr~~~~~~~~p~~~ 80 (299)
++++ -|+|.. ++|-..
T Consensus 195 ~~~~-~~~~~~----~~~~~~ 210 (950)
T 3htx_A 195 ASPH-GLRRKN----AYPSEI 210 (950)
T ss_dssp EETT-EEEESS----CCCHHH
T ss_pred eCCc-ccccCC----CCCHHH
Confidence 8777 999864 666443
No 395
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=40.53 E-value=27 Score=25.25 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=40.4
Q ss_pred HHHhhhcCCC-eeeeeeecccccccCCCCHHHHHHHHHhcCccccccccceeeeee
Q psy3930 132 FSQLLQESPE-IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTV 186 (299)
Q Consensus 132 l~~~~~~~~~-~~l~~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~~~~~~v~r~~ 186 (299)
+..++..++. .....|.+|.+|.-.=.+.++|.+|-..+++..+.|..+++....
T Consensus 27 ~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 27 FESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp HHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred HHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 4555666654 555677777777555577899999998999999999887776554
No 396
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=34.39 E-value=45 Score=29.54 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=27.4
Q ss_pred HHHHHhhhcCCCeee-e-------eeecccccccCCCCHHHHHHHHHhcCccccc
Q psy3930 130 RFFSQLLQESPEIEV-S-------VFLKCNKLARLTHDPDDVVKALRKSKLLEVT 176 (299)
Q Consensus 130 ~fl~~~~~~~~~~~l-~-------~f~~F~~i~~~~~~~~~a~~Al~~~~~~~~~ 176 (299)
.-|+..+.++|.+.- . .|++|.+ .++|++|++.+|+.++-
T Consensus 35 ~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~-------~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 35 NQLLPVLEKCGLVDALLMPPNKPYSFARYRT-------TEESKRAYVTLNGKEVV 82 (345)
T ss_dssp HHHHHHHHTTSCEEEEECCTTCSEEEEEESS-------HHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHhcCCeEEEEEeCCCCEEEEEECC-------HHHHHHHHHHhCCCccc
Confidence 446666666666332 2 2555554 89999999999998873
No 397
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=33.07 E-value=64 Score=22.27 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=37.1
Q ss_pred EEEecCCCCCCHHHHHHHhhc-CC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHH
Q psy3930 199 IYVEKLPPEAEHDYIESVFSK-YG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254 (299)
Q Consensus 199 l~V~nLp~~~t~e~L~~~F~~-~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~A 254 (299)
-|+-..+..++..++++.++. || +|..|+....+ .|.- -|+|.+....+|...
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~-~~~K--KA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM-DGEK--KAVVRLSEDDDAQEV 78 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TSSE--EEEEEECTTSCHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC-CCce--EEEEEECCCCcHHHH
Confidence 445557889999999999886 77 67777755543 3433 399999876665444
No 398
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=24.03 E-value=60 Score=22.40 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=28.1
Q ss_pred EEeeeeecch----hhhhccC-C----HHHHHHHHhcCcc-eeeccCcceeec
Q psy3930 26 IEVSVFLKCN----KLARLTH-D----PDDVVKALRKSKL-LEVTEDGTKVKG 68 (299)
Q Consensus 26 v~~~~~~~f~----~~~~~~~-~----~~~i~~a~~~s~~-~~v~~~~~~vrr 68 (299)
+||.-+++.. |+-.++. | ...|..|+..|.+ |.-+.||..||=
T Consensus 20 ~pL~qvA~isv~~~r~l~I~p~D~~~~~~~IekAI~~S~LglnP~~dG~~Iri 72 (84)
T 1wih_A 20 VALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV 72 (84)
T ss_dssp EEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEE
T ss_pred ccHHHceEEEcCCCCEEEEEecccHHHHHHHHHHHHHCCCCCCcccCCCEEEE
Confidence 5665555543 3332222 3 6789999999984 666778888883
No 399
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=23.71 E-value=2e+02 Score=20.43 Aligned_cols=50 Identities=6% Similarity=0.185 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHhhc-CC---ceEEE-EeeccCCCCCcceEEEEEecCHHHHHHHHH
Q psy3930 206 PEAEHDYIESVFSK-YG---KVTYV-SLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256 (299)
Q Consensus 206 ~~~t~e~L~~~F~~-~G---~i~~v-~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~ 256 (299)
...+..+|++-..+ |+ ++..| .+...-+.|.+.|||.| |.+.+.|.+.-.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~Ep 82 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVEQ 82 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhCc
Confidence 45677888876654 55 34444 34444456777788765 777777666543
No 400
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.12 E-value=2.1e+02 Score=22.46 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=33.3
Q ss_pred cEEEEecCCCC---------CCHHHHHHHh--hcCCceEEEEeeccCCCCCcceEEEEEecC
Q psy3930 197 CTIYVEKLPPE---------AEHDYIESVF--SKYGKVTYVSLPKFKSTGKLKGFAFVEFST 247 (299)
Q Consensus 197 ~~l~V~nLp~~---------~t~e~L~~~F--~~~G~i~~v~i~~~~~~g~~kg~~fV~F~~ 247 (299)
.++.|-|+|.. .+..+|++.| ..|.++....+. +. .| +.|++.|.|.+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~-~~-~G-h~g~aIv~F~~ 71 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLW-NY-LG-HSGTAIVEFNK 71 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEE-CS-SB-EEEEEEEECCS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecc-cC-CC-CceeEEEEecC
Confidence 46777888862 3457899977 899986644433 32 33 57899999996
No 401
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=22.53 E-value=1.3e+02 Score=22.93 Aligned_cols=55 Identities=20% Similarity=0.203 Sum_probs=37.2
Q ss_pred EEEecCCCCCCHHHHHHHhhc-CC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHH
Q psy3930 199 IYVEKLPPEAEHDYIESVFSK-YG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256 (299)
Q Consensus 199 l~V~nLp~~~t~e~L~~~F~~-~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~ 256 (299)
.|+--++..++..+|++..+. || .|..|+....+ .|.- -|||.+....+|.....
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g~K--KAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRP-NGTK--KAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECT-TSCE--EEEEEECTTCCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CCce--EEEEEeCCCCcHHHHHH
Confidence 344446778999999988876 67 67777765443 3433 39999987666655443
No 402
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=22.08 E-value=1.3e+02 Score=23.17 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=36.7
Q ss_pred EEecCCCCCCHHHHHHHhhc-CC-ceEEEEeeccCCCCCcceEEEEEecCHHHHHHHHH
Q psy3930 200 YVEKLPPEAEHDYIESVFSK-YG-KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256 (299)
Q Consensus 200 ~V~nLp~~~t~e~L~~~F~~-~G-~i~~v~i~~~~~~g~~kg~~fV~F~~~~~A~~Al~ 256 (299)
|+--++..++..+|+...+. || .|..|+....+ .|.- -|||.+....+|.....
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p-~g~K--KAyV~La~~~dAldvAn 145 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTI-TGNK--KAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TSCE--EEEEEECSSSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcC-CCcE--EEEEEcCCCCcHHHHHH
Confidence 33346778999999988876 67 67777765443 3433 39999987666655443
Done!