Your job contains 1 sequence.
>psy3930
MEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVT
EDGTKVKGNIIRHFLVPISMETEASDNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFY
LSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGT
KVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGF
AFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLSFGITPLGFESGGWWFKSSHEI
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3930
(299 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0260771 - symbol:Larp7 "La related protein 7" spec... 375 3.5e-34 1
UNIPROTKB|F1NJ86 - symbol:LARP7 "Uncharacterized protein"... 367 9.5e-34 1
UNIPROTKB|D6RFF0 - symbol:LARP7 "La-related protein 7" sp... 366 1.2e-33 1
UNIPROTKB|F1MR14 - symbol:F1MR14 "Uncharacterized protein... 368 1.8e-33 1
RGD|1592474 - symbol:Larp7 "La ribonucleoprotein domain f... 366 2.7e-33 1
UNIPROTKB|Q5XI01 - symbol:Larp7 "La-related protein 7" sp... 366 2.7e-33 1
UNIPROTKB|E1BQG3 - symbol:LARP7 "Uncharacterized protein"... 367 3.0e-33 1
UNIPROTKB|Q4G0J3 - symbol:LARP7 "La-related protein 7" sp... 366 3.1e-33 1
UNIPROTKB|E2QW27 - symbol:LARP7 "Uncharacterized protein"... 366 3.1e-33 1
ZFIN|ZDB-GENE-030131-6896 - symbol:larp7 "La ribonucleopr... 364 3.6e-33 1
UNIPROTKB|I3LNK9 - symbol:I3LNK9 "Uncharacterized protein... 363 6.6e-33 1
UNIPROTKB|F1S150 - symbol:LARP7 "Uncharacterized protein"... 363 6.7e-33 1
MGI|MGI:107634 - symbol:Larp7 "La ribonucleoprotein domai... 361 9.9e-33 1
UNIPROTKB|E7ERC4 - symbol:SSB "Lupus La protein" species:... 190 6.7e-15 1
UNIPROTKB|D6RAF3 - symbol:LARP7 "La-related protein 7" sp... 182 6.0e-14 1
UNIPROTKB|E9PFH8 - symbol:SSB "Lupus La protein" species:... 190 6.9e-13 1
UNIPROTKB|P05455 - symbol:SSB "Lupus La protein" species:... 190 1.0e-12 1
UNIPROTKB|F1P301 - symbol:SSB "Uncharacterized protein" s... 169 1.9e-12 1
TAIR|locus:2170478 - symbol:LARP6a "La related protein 6a... 188 1.9e-12 1
UNIPROTKB|P10881 - symbol:SSB "Lupus La protein homolog" ... 186 3.0e-12 1
UNIPROTKB|E2RH09 - symbol:SSB "Uncharacterized protein" s... 183 7.0e-12 1
UNIPROTKB|D6RF49 - symbol:LARP7 "La-related protein 7" sp... 160 2.0e-11 1
DICTYBASE|DDB_G0281835 - symbol:DDB_G0281835 species:4468... 130 2.0e-11 2
UNIPROTKB|F1S1V1 - symbol:SSB "Uncharacterized protein" s... 176 4.8e-11 1
RGD|1592944 - symbol:LOC680385 "similar to Sjogren syndro... 176 4.8e-11 1
MGI|MGI:98423 - symbol:Ssb "Sjogren syndrome antigen B" s... 175 6.8e-11 1
UNIPROTKB|E1BVY8 - symbol:LOC420093 "Uncharacterized prot... 151 2.1e-10 1
RGD|620804 - symbol:Ssb "Sjogren syndrome antigen B" spec... 170 2.7e-10 1
UNIPROTKB|Q66HM7 - symbol:Ssb "Sjogren syndrome antigen B... 170 2.7e-10 1
UNIPROTKB|F1NYE7 - symbol:SSB "Uncharacterized protein" s... 169 3.3e-10 1
DICTYBASE|DDB_G0281763 - symbol:DDB_G0281763 "Lupus La pr... 166 5.3e-10 1
UNIPROTKB|Q5ZKS1 - symbol:SSB "Uncharacterized protein" s... 147 5.8e-10 1
UNIPROTKB|E9PFL9 - symbol:SSB "Lupus La protein" species:... 146 7.5e-10 1
UNIPROTKB|F1MAB1 - symbol:Ssb "Lupus La protein homolog" ... 163 1.5e-09 1
FB|FBgn0011638 - symbol:La "La autoantigen-like" species:... 162 2.0e-09 1
POMBASE|SPAC57A10.10c - symbol:sla1 "La protein homolog" ... 157 3.7e-09 1
UNIPROTKB|E9PGX9 - symbol:SSB "Lupus La protein" species:... 139 4.5e-09 1
ZFIN|ZDB-GENE-030131-223 - symbol:ssb "Sjogren syndrome a... 154 1.8e-08 1
WB|WBGene00016653 - symbol:C44E4.4 species:6239 "Caenorha... 152 3.0e-08 1
CGD|CAL0004304 - symbol:orf19.2795 species:5476 "Candida ... 144 1.6e-07 1
TAIR|locus:2089508 - symbol:LARP6c "La related protein 6c... 141 7.1e-07 1
ASPGD|ASPL0000060980 - symbol:AN1045 species:162425 "Emer... 138 1.2e-06 1
SGD|S000002209 - symbol:LHP1 "RNA binding protein require... 134 1.5e-06 1
TAIR|locus:2125702 - symbol:La1 "La protein 1" species:37... 137 1.9e-06 1
WB|WBGene00004387 - symbol:rnp-4 species:6239 "Caenorhabd... 115 2.1e-06 1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi... 113 3.4e-06 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 137 4.4e-06 1
UNIPROTKB|I3LLT9 - symbol:ZCRB1 "Uncharacterized protein"... 112 4.4e-06 1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl... 111 5.7e-06 1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl... 111 5.7e-06 1
UNIPROTKB|E9PFS2 - symbol:MKI67IP "MKI67 FHA domain-inter... 124 6.3e-06 1
CGD|CAL0000019 - symbol:orf19.1646 species:5476 "Candida ... 136 6.4e-06 1
GENEDB_PFALCIPARUM|MAL8P1.83 - symbol:MAL8P1.83 "eukaryot... 127 9.0e-06 1
UNIPROTKB|Q8IAZ3 - symbol:MAL8P1.83 "Eukaryotic translati... 127 9.0e-06 1
UNIPROTKB|J9NXM6 - symbol:MKI67IP "Uncharacterized protei... 127 1.2e-05 1
UNIPROTKB|E2RHG8 - symbol:MKI67IP "Uncharacterized protei... 127 1.2e-05 1
DICTYBASE|DDB_G0276725 - symbol:DDB_G0276725 "putative RN... 107 1.6e-05 1
POMBASE|SPAC23A1.09 - symbol:SPAC23A1.09 "RNA-binding pro... 107 1.6e-05 1
WB|WBGene00001230 - symbol:eif-3.G species:6239 "Caenorha... 124 1.8e-05 1
UNIPROTKB|Q48A10 - symbol:CPS_0338 "RNA-binding protein" ... 113 2.0e-05 1
TIGR_CMR|CPS_0338 - symbol:CPS_0338 "RNA-binding protein"... 113 2.0e-05 1
UNIPROTKB|Q9BYG3 - symbol:MKI67IP "MKI67 FHA domain-inter... 124 2.6e-05 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 126 3.0e-05 1
GENEDB_PFALCIPARUM|PF14_0057 - symbol:PF14_0057 "RNA bind... 104 3.3e-05 1
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 104 3.3e-05 1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ... 104 3.3e-05 1
UNIPROTKB|Q8IM34 - symbol:PF14_0057 "RNA binding protein,... 104 3.3e-05 1
UNIPROTKB|F1RXX7 - symbol:MKI67 "Uncharacterized protein"... 123 3.4e-05 1
UNIPROTKB|Q3SZM1 - symbol:MKI67IP "MKI67 FHA domain-inter... 123 3.5e-05 1
DICTYBASE|DDB_G0288291 - symbol:DDB_G0288291 "putative RN... 103 4.3e-05 1
UNIPROTKB|D6RF41 - symbol:RBM46 "Probable RNA-binding pro... 103 4.3e-05 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 103 4.3e-05 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 103 4.3e-05 1
UNIPROTKB|H3BR27 - symbol:RBMX "RNA-binding motif protein... 102 5.5e-05 1
UNIPROTKB|J3KSW7 - symbol:SRSF1 "Serine/arginine-rich-spl... 102 5.5e-05 1
UNIPROTKB|K7EP16 - symbol:EIF3G "Eukaryotic translation i... 102 5.5e-05 1
UNIPROTKB|K7GMF5 - symbol:RBMX "Uncharacterized protein" ... 102 5.5e-05 1
UNIPROTKB|K7GQ39 - symbol:RBMX "Uncharacterized protein" ... 102 5.5e-05 1
UNIPROTKB|Q83D11 - symbol:CBU_0935 "RNA binding protein" ... 102 5.5e-05 1
TIGR_CMR|CBU_0935 - symbol:CBU_0935 "RNA-binding protein"... 102 5.5e-05 1
WB|WBGene00020354 - symbol:T08B6.5 species:6239 "Caenorha... 114 5.8e-05 1
FB|FBgn0264270 - symbol:Sxl "Sex lethal" species:7227 "Dr... 122 6.5e-05 1
UNIPROTKB|K7ENA8 - symbol:EIF3G "Eukaryotic translation i... 120 7.3e-05 1
TAIR|locus:2055951 - symbol:AT2G22100 species:3702 "Arabi... 122 7.5e-05 1
ZFIN|ZDB-GENE-040426-1076 - symbol:eif3g "eukaryotic tran... 120 7.5e-05 1
UNIPROTKB|F2Z4J5 - symbol:EIF3G "Eukaryotic translation i... 120 9.1e-05 1
UNIPROTKB|Q3ZC12 - symbol:EIF3G "Eukaryotic translation i... 120 9.1e-05 1
UNIPROTKB|E2RGG6 - symbol:EIF3G "Eukaryotic translation i... 120 9.1e-05 1
UNIPROTKB|O75821 - symbol:EIF3G "Eukaryotic translation i... 120 9.1e-05 1
MGI|MGI:1858258 - symbol:Eif3g "eukaryotic translation in... 120 9.1e-05 1
RGD|1307191 - symbol:Eif3g "eukaryotic translation initia... 120 9.1e-05 1
UNIPROTKB|Q5RK09 - symbol:Eif3g "Eukaryotic translation i... 120 9.1e-05 1
UNIPROTKB|F1PKV9 - symbol:LARP6 "Uncharacterized protein"... 122 9.1e-05 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 100 9.1e-05 1
UNIPROTKB|K7ELT6 - symbol:CIRBP "Cold-inducible RNA-bindi... 100 9.1e-05 1
UNIPROTKB|K7ELV6 - symbol:CIRBP "Cold-inducible RNA-bindi... 100 9.1e-05 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 100 9.1e-05 1
UNIPROTKB|F1S3I3 - symbol:EIF3G "Eukaryotic translation i... 120 9.2e-05 1
UNIPROTKB|A4RHN3 - symbol:TIF35 "Eukaryotic translation i... 119 0.00010 1
TAIR|locus:2055956 - symbol:UBA1A species:3702 "Arabidops... 120 0.00011 1
WARNING: Descriptions of 72 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0260771 [details] [associations]
symbol:Larp7 "La related protein 7" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0097322 "7SK snRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:AE014298 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 KO:K15191
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
GO:GO:0097322 EMBL:AY061107 RefSeq:NP_524795.2 UniGene:Dm.31047
SMR:Q9W362 IntAct:Q9W362 STRING:Q9W362 EnsemblMetazoa:FBtr0301275
GeneID:44900 KEGG:dme:Dmel_CG42569 UCSC:CG12058-RA
FlyBase:FBgn0260771 InParanoid:Q9W362 OMA:PGLIVEC OrthoDB:EOG4CVDQ5
GenomeRNAi:44900 NextBio:837804 Uniprot:Q9W362
Length = 595
Score = 375 (137.1 bits), Expect = 3.5e-34, P = 3.5e-34
Identities = 75/176 (42%), Positives = 108/176 (61%)
Query: 81 ETEASDNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESP 140
E + + +D S +KDGG R RK+ L+ I MEFY D+NL KDRF + +++ P
Sbjct: 33 EENSKEPAPEDASP-DKKDGG-RKRKRHLFNSIRGQMEFYFGDANLSKDRFLRRYVEQDP 90
Query: 141 EIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIY 200
+ + +FL NK+ LT D + KAL S+LLE+ E KV+R + D+ DV++ T+Y
Sbjct: 91 YVPLEIFLTFNKIKTLTQDVQQIAKALSNSQLLELDETELKVKRRTKLPDQRDVNDKTLY 150
Query: 201 VEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
VE LP A HD+++ VFS+YG V YVSLP + T K+K FAF+EF KA++
Sbjct: 151 VEALPANATHDWLKEVFSRYGPVAYVSLPHYPGTKKIKEFAFIEFEKSGSLEKAVK 206
Score = 155 (59.6 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVT 60
MEFY D+NL KDRF + +++ P + + +FL NK+ LT D + KAL S+LLE+
Sbjct: 67 MEFYFGDANLSKDRFLRRYVEQDPYVPLEIFLTFNKIKTLTQDVQQIAKALSNSQLLELD 126
Query: 61 EDGTKVK 67
E KVK
Sbjct: 127 ETELKVK 133
>UNIPROTKB|F1NJ86 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02009328 IPI:IPI00598515
Ensembl:ENSGALT00000032138 ArrayExpress:F1NJ86 Uniprot:F1NJ86
Length = 233
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 79/188 (42%), Positives = 120/188 (63%)
Query: 80 METEAS-DNVDKDLSDLQRKDGGG--RHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLL 136
METEA+ D ++ S Q+K+ R R KQ+ I ++F+ D NL KDRF + +
Sbjct: 4 METEAARDKAMEEESTEQKKEREKKKRSRVKQVLADIAKQVDFWFGDVNLHKDRFLREQI 63
Query: 137 QESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP-D 193
++S + +++S+ + NK+ +LT D + +A++ S ++E+ +GT++RR + ++P D
Sbjct: 64 EKSRDGYVDISLLVSFNKMKKLTTDGKLIARAVKSSSVVELDLEGTRIRRRRPLGERPKD 123
Query: 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAK 253
VD T+YVE LP H +IE VF K G V YVS+P++KSTG KGFAFVEF TKE+A K
Sbjct: 124 VDSRTVYVELLPKNVNHSWIERVFGKCGNVVYVSIPRYKSTGDPKGFAFVEFETKEQAEK 183
Query: 254 ALELGLNP 261
A+E NP
Sbjct: 184 AIEFLNNP 191
Score = 116 (45.9 bits), Expect = 0.00012, P = 0.00012
Identities = 20/69 (28%), Positives = 46/69 (66%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE 58
++F+ D NL KDRF + +++S + +++S+ + NK+ +LT D + +A++ S ++E
Sbjct: 44 VDFWFGDVNLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARAVKSSSVVE 103
Query: 59 VTEDGTKVK 67
+ +GT+++
Sbjct: 104 LDLEGTRIR 112
>UNIPROTKB|D6RFF0 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HOGENOM:HOG000113284
HGNC:HGNC:24912 ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966774
ProteinModelPortal:D6RFF0 SMR:D6RFF0 Ensembl:ENST00000505034
ArrayExpress:D6RFF0 Bgee:D6RFF0 Uniprot:D6RFF0
Length = 299
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 79/189 (41%), Positives = 121/189 (64%)
Query: 80 METEAS--DNVDKDLSDLQRKD--GGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQL 135
METE+ + V ++ S ++K+ R R KQ+ I ++F+ D+NL KDRF +
Sbjct: 1 METESGNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQ 60
Query: 136 LQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP- 192
+++S + +++S+ + NK+ +LT D + +ALR S ++E+ +GT++RR + ++P
Sbjct: 61 IEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPK 120
Query: 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAA 252
D DE T+YVE LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+AA
Sbjct: 121 DEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAA 180
Query: 253 KALELGLNP 261
KA+E NP
Sbjct: 181 KAIEFLNNP 189
Score = 124 (48.7 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 22/69 (31%), Positives = 47/69 (68%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE 58
++F+ D+NL KDRF + +++S + +++S+ + NK+ +LT D + +ALR S ++E
Sbjct: 42 VDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVE 101
Query: 59 VTEDGTKVK 67
+ +GT+++
Sbjct: 102 LDLEGTRIR 110
>UNIPROTKB|F1MR14 [details] [associations]
symbol:F1MR14 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:DAAA02016483 EMBL:DAAA02016480 EMBL:DAAA02016481
EMBL:DAAA02016482 IPI:IPI00691372 Ensembl:ENSBTAT00000012693
ArrayExpress:F1MR14 Uniprot:F1MR14
Length = 578
Score = 368 (134.6 bits), Expect = 1.8e-33, P = 1.8e-33
Identities = 78/188 (41%), Positives = 122/188 (64%)
Query: 80 METEASDNVDKDLSD-LQRK--DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLL 136
ME E S N +K + + +++K + R R KQ+ I+ ++F+ D+NL KDRF + +
Sbjct: 1 MEAE-SGNKEKAMEESIEKKKEEKKKRSRVKQVLADIVKQVDFWFGDANLHKDRFLREQI 59
Query: 137 QESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP-D 193
++S + +++S+ + NK+ +LT D + +AL+ S ++E+ +GT++RR + ++P D
Sbjct: 60 EKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSAVVELDLEGTRIRRKKPLGERPKD 119
Query: 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAK 253
DE T+YVE LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+AAK
Sbjct: 120 EDERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAK 179
Query: 254 ALELGLNP 261
A+E NP
Sbjct: 180 AIEFLNNP 187
Score = 121 (47.7 bits), Expect = 0.00018, P = 0.00018
Identities = 21/69 (30%), Positives = 47/69 (68%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE 58
++F+ D+NL KDRF + +++S + +++S+ + NK+ +LT D + +AL+ S ++E
Sbjct: 40 VDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSAVVE 99
Query: 59 VTEDGTKVK 67
+ +GT+++
Sbjct: 100 LDLEGTRIR 108
>RGD|1592474 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0035562
"negative regulation of chromatin binding" evidence=ISO]
[GO:0036093 "germ cell proliferation" evidence=ISO] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 366 (133.9 bits), Expect = 2.7e-33, P = 2.7e-33
Identities = 74/185 (40%), Positives = 120/185 (64%)
Query: 80 METEASDNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQES 139
METE +++ ++ ++++ R R KQ+ I ++F+ D+NL KDRF + +++S
Sbjct: 1 METENQKTMEES-TEKRKEEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKS 59
Query: 140 PE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP-DVDE 196
+ +++S+ + NK+ +LT D + +AL+ S ++E+ +GT++RR + ++P D +E
Sbjct: 60 RDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDEEE 119
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
T+YVE LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+AAKA+E
Sbjct: 120 RTVYVELLPKNVTHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIE 179
Query: 257 LGLNP 261
NP
Sbjct: 180 FLNNP 184
Score = 122 (48.0 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 21/69 (30%), Positives = 47/69 (68%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE 58
++F+ D+NL KDRF + +++S + +++S+ + NK+ +LT D + +AL+ S ++E
Sbjct: 37 VDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVE 96
Query: 59 VTEDGTKVK 67
+ +GT+++
Sbjct: 97 LDLEGTRIR 105
Score = 46 (21.3 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 17/74 (22%), Positives = 32/74 (43%)
Query: 149 KCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEA 208
K K R + + +D + K K +DG + V ++ D++ C+ EK P +
Sbjct: 287 KAGKRERSSAEDEDCLPPRPKLKK-RAQKDGGGPAASEVSKEHRDLEFCSTEEEKEPGDR 345
Query: 209 EHDYIESVFSKYGK 222
+ D + K+ K
Sbjct: 346 KGDSLSKGKRKHKK 359
>UNIPROTKB|Q5XI01 [details] [associations]
symbol:Larp7 "La-related protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:1592474 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
HSSP:Q7YZ92 CTD:51574 HOVERGEN:HBG081891 KO:K15191
OrthoDB:EOG4TXBS0 InterPro:IPR014886 Pfam:PF08777 EMBL:BC083898
IPI:IPI00389960 RefSeq:NP_001037755.2 UniGene:Rn.79854
ProteinModelPortal:Q5XI01 STRING:Q5XI01 PhosphoSite:Q5XI01
PRIDE:Q5XI01 GeneID:686883 KEGG:rno:686883 NextBio:732906
ArrayExpress:Q5XI01 Genevestigator:Q5XI01 Uniprot:Q5XI01
Length = 571
Score = 366 (133.9 bits), Expect = 2.7e-33, P = 2.7e-33
Identities = 74/185 (40%), Positives = 120/185 (64%)
Query: 80 METEASDNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQES 139
METE +++ ++ ++++ R R KQ+ I ++F+ D+NL KDRF + +++S
Sbjct: 1 METENQKTMEES-TEKRKEEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKS 59
Query: 140 PE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP-DVDE 196
+ +++S+ + NK+ +LT D + +AL+ S ++E+ +GT++RR + ++P D +E
Sbjct: 60 RDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDEEE 119
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
T+YVE LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+AAKA+E
Sbjct: 120 RTVYVELLPKNVTHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIE 179
Query: 257 LGLNP 261
NP
Sbjct: 180 FLNNP 184
Score = 122 (48.0 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 21/69 (30%), Positives = 47/69 (68%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE 58
++F+ D+NL KDRF + +++S + +++S+ + NK+ +LT D + +AL+ S ++E
Sbjct: 37 VDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVE 96
Query: 59 VTEDGTKVK 67
+ +GT+++
Sbjct: 97 LDLEGTRIR 105
Score = 46 (21.3 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 17/74 (22%), Positives = 32/74 (43%)
Query: 149 KCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEA 208
K K R + + +D + K K +DG + V ++ D++ C+ EK P +
Sbjct: 287 KAGKRERSSAEDEDCLPPRPKLKK-RAQKDGGGPAASEVSKEHRDLEFCSTEEEKEPGDR 345
Query: 209 EHDYIESVFSKYGK 222
+ D + K+ K
Sbjct: 346 KGDSLSKGKRKHKK 359
>UNIPROTKB|E1BQG3 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AADN02009328 IPI:IPI00680045 Ensembl:ENSGALT00000019679
ArrayExpress:E1BQG3 Uniprot:E1BQG3
Length = 602
Score = 367 (134.2 bits), Expect = 3.0e-33, P = 3.0e-33
Identities = 79/188 (42%), Positives = 120/188 (63%)
Query: 80 METEAS-DNVDKDLSDLQRKDGGG--RHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLL 136
METEA+ D ++ S Q+K+ R R KQ+ I ++F+ D NL KDRF + +
Sbjct: 4 METEAARDKAMEEESTEQKKEREKKKRSRVKQVLADIAKQVDFWFGDVNLHKDRFLREQI 63
Query: 137 QESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP-D 193
++S + +++S+ + NK+ +LT D + +A++ S ++E+ +GT++RR + ++P D
Sbjct: 64 EKSRDGYVDISLLVSFNKMKKLTTDGKLIARAVKSSSVVELDLEGTRIRRRRPLGERPKD 123
Query: 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAK 253
VD T+YVE LP H +IE VF K G V YVS+P++KSTG KGFAFVEF TKE+A K
Sbjct: 124 VDSRTVYVELLPKNVNHSWIERVFGKCGNVVYVSIPRYKSTGDPKGFAFVEFETKEQAEK 183
Query: 254 ALELGLNP 261
A+E NP
Sbjct: 184 AIEFLNNP 191
>UNIPROTKB|Q4G0J3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 EMBL:CH471057
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 HSSP:P05455 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 EMBL:EU667388 EMBL:AF068284 EMBL:BC066945
EMBL:BC107709 EMBL:AL049996 IPI:IPI00294742 IPI:IPI00395536
PIR:T08692 RefSeq:NP_001253968.1 RefSeq:NP_056269.1
RefSeq:NP_057732.2 UniGene:Hs.713663 ProteinModelPortal:Q4G0J3
SMR:Q4G0J3 DIP:DIP-47624N IntAct:Q4G0J3 MINT:MINT-4540675
STRING:Q4G0J3 PhosphoSite:Q4G0J3 DMDM:121945944 PaxDb:Q4G0J3
PRIDE:Q4G0J3 Ensembl:ENST00000324052 Ensembl:ENST00000344442
Ensembl:ENST00000509061 GeneID:51574 KEGG:hsa:51574 UCSC:uc003iay.3
GeneCards:GC04P113559 HGNC:HGNC:24912 HPA:HPA026842 HPA:HPA027930
MIM:612026 neXtProt:NX_Q4G0J3 PharmGKB:PA145148525
InParanoid:Q4G0J3 ChiTaRS:LARP7 GenomeRNAi:51574 NextBio:55403
ArrayExpress:Q4G0J3 Bgee:Q4G0J3 CleanEx:HS_LARP7
Genevestigator:Q4G0J3 Uniprot:Q4G0J3
Length = 582
Score = 366 (133.9 bits), Expect = 3.1e-33, P = 3.1e-33
Identities = 79/189 (41%), Positives = 121/189 (64%)
Query: 80 METEAS--DNVDKDLSDLQRKD--GGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQL 135
METE+ + V ++ S ++K+ R R KQ+ I ++F+ D+NL KDRF +
Sbjct: 1 METESGNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQ 60
Query: 136 LQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP- 192
+++S + +++S+ + NK+ +LT D + +ALR S ++E+ +GT++RR + ++P
Sbjct: 61 IEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPK 120
Query: 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAA 252
D DE T+YVE LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+AA
Sbjct: 121 DEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAA 180
Query: 253 KALELGLNP 261
KA+E NP
Sbjct: 181 KAIEFLNNP 189
Score = 124 (48.7 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 22/69 (31%), Positives = 47/69 (68%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE 58
++F+ D+NL KDRF + +++S + +++S+ + NK+ +LT D + +ALR S ++E
Sbjct: 42 VDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVE 101
Query: 59 VTEDGTKVK 67
+ +GT+++
Sbjct: 102 LDLEGTRIR 110
>UNIPROTKB|E2QW27 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA
EMBL:AAEX03016829 ProteinModelPortal:E2QW27
Ensembl:ENSCAFT00000018607 Uniprot:E2QW27
Length = 582
Score = 366 (133.9 bits), Expect = 3.1e-33, P = 3.1e-33
Identities = 78/189 (41%), Positives = 118/189 (62%)
Query: 80 METEASDNVDKDLSDLQRK----DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQL 135
METE N +K + + K + R R KQ+ I ++F+ D+NL KDRF +
Sbjct: 1 METEGG-NQEKAMEECTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQ 59
Query: 136 LQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP- 192
+++S + +++S+ + NK+ +LT D + +AL+ S ++E+ +GT++RR + ++P
Sbjct: 60 IEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLGERPK 119
Query: 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAA 252
D DE T+YVE LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+AA
Sbjct: 120 DEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAA 179
Query: 253 KALELGLNP 261
KA+E NP
Sbjct: 180 KAIEFLNNP 188
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 21/69 (30%), Positives = 47/69 (68%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE 58
++F+ D+NL KDRF + +++S + +++S+ + NK+ +LT D + +AL+ S ++E
Sbjct: 41 VDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVE 100
Query: 59 VTEDGTKVK 67
+ +GT+++
Sbjct: 101 LDLEGTRIR 109
>ZFIN|ZDB-GENE-030131-6896 [details] [associations]
symbol:larp7 "La ribonucleoprotein domain family,
member 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6896 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715
EMBL:BC049455 IPI:IPI00509628 RefSeq:NP_956224.1 UniGene:Dr.29131
HSSP:Q7YZ92 ProteinModelPortal:Q7ZWE3 STRING:Q7ZWE3 PRIDE:Q7ZWE3
GeneID:334956 KEGG:dre:334956 CTD:51574 HOGENOM:HOG000113284
HOVERGEN:HBG081891 InParanoid:Q7ZWE3 KO:K15191 OrthoDB:EOG4TXBS0
NextBio:20810607 ArrayExpress:Q7ZWE3 InterPro:IPR014886
Pfam:PF08777 Uniprot:Q7ZWE3
Length = 555
Score = 364 (133.2 bits), Expect = 3.6e-33, P = 3.6e-33
Identities = 76/187 (40%), Positives = 115/187 (61%)
Query: 82 TEASDNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPE 141
+ D DLS+ + + R R KQL + +EF+ D NL KDRF ++++S +
Sbjct: 15 SSVGDTACADLSEKKDNEKKKRSRVKQLLSDVKKQVEFWFGDVNLHKDRFMKSIIEQSRD 74
Query: 142 --IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP-DVDECT 198
I+++V N++ LT D + +AL+ S ++EV ++GT++RR + + P DVD T
Sbjct: 75 GYIDIAVLTTFNRMKNLTADVKLIARALKNSTIVEVNDEGTRIRRKEPLGETPKDVDSRT 134
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELG 258
+YVE LP H ++E VFSK G V Y+S+P++KST KGFAFVEF T+E+A KA+E+
Sbjct: 135 VYVELLPKTVTHIWLERVFSKCGHVVYISIPRYKSTRHSKGFAFVEFETQEQAQKAVEML 194
Query: 259 LNPCPPD 265
NP P D
Sbjct: 195 NNP-PED 200
Score = 128 (50.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 23/69 (33%), Positives = 45/69 (65%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE 58
+EF+ D NL KDRF ++++S + I+++V N++ LT D + +AL+ S ++E
Sbjct: 50 VEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKNLTADVKLIARALKNSTIVE 109
Query: 59 VTEDGTKVK 67
V ++GT+++
Sbjct: 110 VNDEGTRIR 118
>UNIPROTKB|I3LNK9 [details] [associations]
symbol:I3LNK9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464
Ensembl:ENSSSCT00000031777 OMA:NASEECE Uniprot:I3LNK9
Length = 580
Score = 363 (132.8 bits), Expect = 6.6e-33, P = 6.6e-33
Identities = 78/190 (41%), Positives = 122/190 (64%)
Query: 80 METEASDNVDKDLSD--LQRK---DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQ 134
MET+ S N++K + + ++K + R R KQ+ I ++F+ D+NL KDRF +
Sbjct: 1 METK-SGNLEKAMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLRE 59
Query: 135 LLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP 192
+++S + +++S+ + NK+ +LT D + +AL+ S ++E+ +GT++RR + ++P
Sbjct: 60 QIEKSRDGYVDISLLVSFNKMKKLTTDRKLIARALKSSAVVELDLEGTRIRRKKPLGERP 119
Query: 193 -DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 251
D DE T+YVE LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+A
Sbjct: 120 KDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQA 179
Query: 252 AKALELGLNP 261
AKA+E NP
Sbjct: 180 AKAIEFLNNP 189
Score = 121 (47.7 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 21/69 (30%), Positives = 47/69 (68%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE 58
++F+ D+NL KDRF + +++S + +++S+ + NK+ +LT D + +AL+ S ++E
Sbjct: 42 VDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDRKLIARALKSSAVVE 101
Query: 59 VTEDGTKVK 67
+ +GT+++
Sbjct: 102 LDLEGTRIR 110
Score = 39 (18.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 133 SQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK 171
S++ QE+ E+E+S + K T D ++KA RK K
Sbjct: 327 SEVCQENKELEIST--EEEKDTGDTKD-GSLLKAKRKHK 362
>UNIPROTKB|F1S150 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:NNPPEDA EMBL:FP236150
Ensembl:ENSSSCT00000009986 Uniprot:F1S150
Length = 582
Score = 363 (132.8 bits), Expect = 6.7e-33, P = 6.7e-33
Identities = 78/190 (41%), Positives = 122/190 (64%)
Query: 80 METEASDNVDKDLSD--LQRK---DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQ 134
MET+ S N++K + + ++K + R R KQ+ I ++F+ D+NL KDRF +
Sbjct: 1 METK-SGNLEKAMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLRE 59
Query: 135 LLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP 192
+++S + +++S+ + NK+ +LT D + +AL+ S ++E+ +GT++RR + ++P
Sbjct: 60 QIEKSRDGYVDISLLVSFNKMKKLTTDRKLIARALKSSAVVELDLEGTRIRRKKPLGERP 119
Query: 193 -DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 251
D DE T+YVE LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+A
Sbjct: 120 KDEDERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQA 179
Query: 252 AKALELGLNP 261
AKA+E NP
Sbjct: 180 AKAIEFLNNP 189
Score = 121 (47.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 21/69 (30%), Positives = 47/69 (68%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE 58
++F+ D+NL KDRF + +++S + +++S+ + NK+ +LT D + +AL+ S ++E
Sbjct: 42 VDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDRKLIARALKSSAVVE 101
Query: 59 VTEDGTKVK 67
+ +GT+++
Sbjct: 102 LDLEGTRIR 110
Score = 39 (18.8 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 133 SQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK 171
S++ QE+ E+E+S + K T D ++KA RK K
Sbjct: 327 SEVCQENKELEIST--EEEKDTGDTKD-GSLLKAKRKHK 362
>MGI|MGI:107634 [details] [associations]
symbol:Larp7 "La ribonucleoprotein domain family, member 7"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0035562 "negative regulation of chromatin binding"
evidence=IGI] [GO:0036093 "germ cell proliferation" evidence=IMP]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107634 GO:GO:0005654 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 CTD:51574
HOVERGEN:HBG081891 KO:K15191 OrthoDB:EOG4TXBS0 InterPro:IPR014886
Pfam:PF08777 ChiTaRS:LARP7 EMBL:AC113952 EMBL:BC020127
EMBL:BC023165 EMBL:BC029178 EMBL:AK012726 EMBL:AK012772
EMBL:AK015041 EMBL:AK162147 IPI:IPI00340860 IPI:IPI00831552
RefSeq:NP_613059.2 UniGene:Mm.291032 ProteinModelPortal:Q05CL8
SMR:Q05CL8 IntAct:Q05CL8 STRING:Q05CL8 PhosphoSite:Q05CL8
PaxDb:Q05CL8 PRIDE:Q05CL8 DNASU:28036 Ensembl:ENSMUST00000029588
GeneID:28036 KEGG:mmu:28036 UCSC:uc008rhd.1
GeneTree:ENSGT00530000063464 InParanoid:Q05CL8 OMA:NNPPEDA
NextBio:306558 Bgee:Q05CL8 CleanEx:MM_LARP7 Genevestigator:Q05CL8
Uniprot:Q05CL8
Length = 570
Score = 361 (132.1 bits), Expect = 9.9e-33, P = 9.9e-33
Identities = 74/185 (40%), Positives = 119/185 (64%)
Query: 80 METEASDNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQES 139
METE +++ S ++++ R R KQ+ I ++F+ D+NL KD+F + +++S
Sbjct: 1 METENQKTMEE--STKRKEEKKKRSRVKQVLADIAKQVDFWFGDANLHKDKFLREQIEKS 58
Query: 140 PE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP-DVDE 196
+ +++S+ + NK+ +LT D + +AL+ S ++E+ +GT++RR + ++P D +E
Sbjct: 59 RDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVELDLEGTRIRRKKPLGERPKDEEE 118
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
T+YVE LP H +IE VF K G V Y+S+P +KSTG KGFAFVEF TKE+AAKA+E
Sbjct: 119 RTVYVELLPKNVTHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIE 178
Query: 257 LGLNP 261
NP
Sbjct: 179 FLNNP 183
Score = 119 (46.9 bits), Expect = 0.00030, P = 0.00030
Identities = 20/69 (28%), Positives = 47/69 (68%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE 58
++F+ D+NL KD+F + +++S + +++S+ + NK+ +LT D + +AL+ S ++E
Sbjct: 36 VDFWFGDANLHKDKFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALKSSSVVE 95
Query: 59 VTEDGTKVK 67
+ +GT+++
Sbjct: 96 LDLEGTRIR 104
>UNIPROTKB|E7ERC4 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916922
ProteinModelPortal:E7ERC4 SMR:E7ERC4 PRIDE:E7ERC4
Ensembl:ENST00000422006 ArrayExpress:E7ERC4 Bgee:E7ERC4
Uniprot:E7ERC4
Length = 184
Score = 190 (71.9 bits), Expect = 6.7e-15, P = 6.7e-15
Identities = 51/168 (30%), Positives = 89/168 (52%)
Query: 99 DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLT 157
+ G + L +I + +E+Y D NL +D+F + ++ + + + + +K N+L RLT
Sbjct: 3 ENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLT 62
Query: 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRT-------VVVQDKPDVDECTIYVEKLPPEA 208
D + +V+AL KSK L+E++ED TK+RR+ V + K DV ++Y++ P +A
Sbjct: 63 TDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDA 122
Query: 209 EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
D I+ G+V + + + KG FV F + E A K +E
Sbjct: 123 TLDDIKEWLEDKGQVLNIQMRRTLHKA-FKGSIFVVFDSIESAKKFVE 169
Score = 125 (49.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 26/70 (37%), Positives = 47/70 (67%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y D NL +D+F + ++ + + + + +K N+L RLT D + +V+AL KSK L+
Sbjct: 21 IEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELM 80
Query: 58 EVTEDGTKVK 67
E++ED TK++
Sbjct: 81 EISEDKTKIR 90
>UNIPROTKB|D6RAF3 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00966387
ProteinModelPortal:D6RAF3 SMR:D6RAF3 Ensembl:ENST00000507443
HOGENOM:HOG000213946 ArrayExpress:D6RAF3 Bgee:D6RAF3 Uniprot:D6RAF3
Length = 129
Score = 182 (69.1 bits), Expect = 6.0e-14, P = 6.0e-14
Identities = 43/129 (33%), Positives = 79/129 (61%)
Query: 80 METEAS--DNVDKDLSDLQRKD--GGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQL 135
METE+ + V ++ S ++K+ R R KQ+ I ++F+ D+NL KDRF +
Sbjct: 1 METESGNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQ 60
Query: 136 LQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP- 192
+++S + +++S+ + NK+ +LT D + +ALR S ++E+ +GT++RR + ++P
Sbjct: 61 IEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPK 120
Query: 193 DVDECTIYV 201
D DE T+YV
Sbjct: 121 DEDERTVYV 129
Score = 124 (48.7 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 22/69 (31%), Positives = 47/69 (68%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE 58
++F+ D+NL KDRF + +++S + +++S+ + NK+ +LT D + +ALR S ++E
Sbjct: 42 VDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVE 101
Query: 59 VTEDGTKVK 67
+ +GT+++
Sbjct: 102 LDLEGTRIR 110
>UNIPROTKB|E9PFH8 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00916802
ProteinModelPortal:E9PFH8 SMR:E9PFH8 PRIDE:E9PFH8
Ensembl:ENST00000409005 ArrayExpress:E9PFH8 Bgee:E9PFH8
Uniprot:E9PFH8
Length = 361
Score = 190 (71.9 bits), Expect = 6.9e-13, P = 6.9e-13
Identities = 51/168 (30%), Positives = 89/168 (52%)
Query: 99 DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLT 157
+ G + L +I + +E+Y D NL +D+F + ++ + + + + +K N+L RLT
Sbjct: 3 ENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLT 62
Query: 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRT-------VVVQDKPDVDECTIYVEKLPPEA 208
D + +V+AL KSK L+E++ED TK+RR+ V + K DV ++Y++ P +A
Sbjct: 63 TDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDA 122
Query: 209 EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
D I+ G+V + + + KG FV F + E A K +E
Sbjct: 123 TLDDIKEWLEDKGQVLNIQMRRTLHKA-FKGSIFVVFDSIESAKKFVE 169
Score = 127 (49.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 57/273 (20%), Positives = 123/273 (45%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y D NL +D+F + ++ + + + + +K N+L RLT D + +V+AL KSK L+
Sbjct: 21 IEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELM 80
Query: 58 EVTEDGTKVKGNIIRHFL-VPISMETEASDN--------VDKDLSDLQR--KDGG---GR 103
E++ED TK++ + + V + + + D L D++ +D G
Sbjct: 81 EISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNI 140
Query: 104 HRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHD-PDD 162
++ L++ + F + DS +F Q+ E ++ + K + A+ + +
Sbjct: 141 QMRRTLHKAFKGSI-FVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQN 199
Query: 163 VVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTI-YVEKLPPEAEHDYIESVFSKYG 221
V+A ++K + E K+ ++ + C + + L + + + +FS +G
Sbjct: 200 KVEAKLRAK--QEQEAKQKLEEDAEMKSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHG 257
Query: 222 KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
++ ++ + G +G + KE KA
Sbjct: 258 EIKWIDFVR----GAKEGIILFKEKAKEALGKA 286
>UNIPROTKB|P05455 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000049 "tRNA binding" evidence=TAS] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0006400 "tRNA modification"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:CH471058 GO:GO:0030529 GO:GO:0006400 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 CTD:6741
HOGENOM:HOG000006947 HOVERGEN:HBG001407 OMA:ENAEMKS EMBL:X13697
EMBL:J04205 EMBL:BT009862 EMBL:AB451228 EMBL:AC009967 EMBL:BC001289
EMBL:BC020818 EMBL:M20328 IPI:IPI00009032 PIR:A31888
RefSeq:NP_003133.1 UniGene:Hs.632535 PDB:1OWX PDB:1S79 PDB:1S7A
PDB:1YTY PDB:1ZH5 PDB:2VOD PDB:2VON PDB:2VOO PDB:2VOP PDBsum:1OWX
PDBsum:1S79 PDBsum:1S7A PDBsum:1YTY PDBsum:1ZH5 PDBsum:2VOD
PDBsum:2VON PDBsum:2VOO PDBsum:2VOP DisProt:DP00229
ProteinModelPortal:P05455 SMR:P05455 DIP:DIP-29750N IntAct:P05455
MINT:MINT-5002383 STRING:P05455 PhosphoSite:P05455 DMDM:125985
PaxDb:P05455 PeptideAtlas:P05455 PRIDE:P05455 DNASU:6741
Ensembl:ENST00000260956 Ensembl:ENST00000409333 GeneID:6741
KEGG:hsa:6741 UCSC:uc002ufk.3 GeneCards:GC02P170619 HGNC:HGNC:11316
HPA:CAB004643 HPA:HPA012385 HPA:HPA017287 MIM:109090
neXtProt:NX_P05455 PharmGKB:PA36140 InParanoid:P05455
OrthoDB:EOG4C2HB3 PhylomeDB:P05455 EvolutionaryTrace:P05455
GenomeRNAi:6741 NextBio:26296 PMAP-CutDB:P05455 ArrayExpress:P05455
Bgee:P05455 CleanEx:HS_SSB Genevestigator:P05455
GermOnline:ENSG00000138385 GO:GO:0008334 Uniprot:P05455
Length = 408
Score = 190 (71.9 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 51/168 (30%), Positives = 89/168 (52%)
Query: 99 DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLT 157
+ G + L +I + +E+Y D NL +D+F + ++ + + + + +K N+L RLT
Sbjct: 3 ENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLT 62
Query: 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRT-------VVVQDKPDVDECTIYVEKLPPEA 208
D + +V+AL KSK L+E++ED TK+RR+ V + K DV ++Y++ P +A
Sbjct: 63 TDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDA 122
Query: 209 EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
D I+ G+V + + + KG FV F + E A K +E
Sbjct: 123 TLDDIKEWLEDKGQVLNIQMRRTLHKA-FKGSIFVVFDSIESAKKFVE 169
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 57/273 (20%), Positives = 123/273 (45%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y D NL +D+F + ++ + + + + +K N+L RLT D + +V+AL KSK L+
Sbjct: 21 IEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELM 80
Query: 58 EVTEDGTKVKGNIIRHFL-VPISMETEASDN--------VDKDLSDLQR--KDGG---GR 103
E++ED TK++ + + V + + + D L D++ +D G
Sbjct: 81 EISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNI 140
Query: 104 HRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHD-PDD 162
++ L++ + F + DS +F Q+ E ++ + K + A+ + +
Sbjct: 141 QMRRTLHKAFKGSI-FVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQN 199
Query: 163 VVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTI-YVEKLPPEAEHDYIESVFSKYG 221
V+A ++K + E K+ ++ + C + + L + + + +FS +G
Sbjct: 200 KVEAKLRAK--QEQEAKQKLEEDAEMKSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHG 257
Query: 222 KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
++ ++ + G +G + KE KA
Sbjct: 258 EIKWIDFVR----GAKEGIILFKEKAKEALGKA 286
>UNIPROTKB|F1P301 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02020271 IPI:IPI01017187
Ensembl:ENSGALT00000038515 ArrayExpress:F1P301 Uniprot:F1P301
Length = 205
Score = 169 (64.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 50/170 (29%), Positives = 86/170 (50%)
Query: 99 DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLT 157
+ G L +I +E+Y + NL +D+F + ++ + + + V +K N+L+RL+
Sbjct: 3 ENGDGENMSILESKICQQIEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLS 62
Query: 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRT-------VVVQDKPDVDECTIYVEKLPPEA 208
D +V+ALRKSK L+E+ ED TK+RR+ + Q K + ++YV+ P +A
Sbjct: 63 KDFGVIVEALRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLDA 122
Query: 209 EHDYIESVFSKYGKVTYVSLPK-FKSTGKLKGFAFVEFSTKEEAAKALEL 257
D I+ G V + + + + T KG F F + E A K E+
Sbjct: 123 TLDDIKEWLEDKGPVENIQMRRTLQKT--FKGSIFAVFDSVESAKKFTEI 170
Score = 125 (49.1 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 26/70 (37%), Positives = 47/70 (67%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y + NL +D+F + ++ + + + V +K N+L+RL+ D +V+ALRKSK L+
Sbjct: 21 IEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLSKDFGVIVEALRKSKTGLM 80
Query: 58 EVTEDGTKVK 67
E+ ED TK++
Sbjct: 81 EINEDKTKIR 90
>TAIR|locus:2170478 [details] [associations]
symbol:LARP6a "La related protein 6a" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0006944 "cellular membrane fusion" evidence=RCA] [GO:0048193
"Golgi vesicle transport" evidence=RCA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 HSSP:P19339 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 KO:K15191 HOGENOM:HOG000244026
EMBL:AY050403 EMBL:BT000588 IPI:IPI00526923 RefSeq:NP_851141.1
UniGene:At.9180 ProteinModelPortal:Q94A38 SMR:Q94A38 IntAct:Q94A38
STRING:Q94A38 PRIDE:Q94A38 EnsemblPlants:AT5G46250.1 GeneID:834667
KEGG:ath:AT5G46250 TAIR:At5g46250 InParanoid:Q94A38 OMA:WRNGMRV
PhylomeDB:Q94A38 ProtClustDB:CLSN2680453 Genevestigator:Q94A38
Uniprot:Q94A38
Length = 422
Score = 188 (71.2 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 72/252 (28%), Positives = 115/252 (45%)
Query: 22 ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKGNIIR-HFLVP--- 77
ESP I +V L + A T D L + VTE V N+ L P
Sbjct: 13 ESPSISDAVPLHAPEDA--TADFSQPQSPLHEVDSFPVTESSDDVVVNVSEIPNLSPSDD 70
Query: 78 -ISMETEASDNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLL 136
E + ++ D+D + + G +L Q+I+ +E+Y SD NL D+F +
Sbjct: 71 DFDHERNSGEDRDQDHGENPVETDGVVVPIDELNQKIIRQVEYYFSDENLPTDKFLLNAM 130
Query: 137 QESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDV 194
+ + + + +S +K+ +LT D +V AL++S L V+ D KV+R + + D
Sbjct: 131 KRNKKGFVPISTIATFHKMKKLTRDHALIVSALKESSFLVVSADEKKVKRLSPLPEIRDP 190
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSL--P----KFKSTGKLKGF------AF 242
T+ VE LP + ++ I +F K G + VS+ P + + GK + F AF
Sbjct: 191 KIFTVLVENLPEDHSNENIREIFGKAGSIKSVSICDPNAVEESEKGGKKENFIRTRLHAF 250
Query: 243 VEFSTKEEAAKA 254
VE+ T E A KA
Sbjct: 251 VEYETVEAAEKA 262
>UNIPROTKB|P10881 [details] [associations]
symbol:SSB "Lupus La protein homolog" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:X13698 EMBL:BC103234 IPI:IPI00687044 PIR:S03849
RefSeq:NP_788838.1 UniGene:Bt.15513 ProteinModelPortal:P10881
SMR:P10881 STRING:P10881 PRIDE:P10881 Ensembl:ENSBTAT00000011484
GeneID:338071 KEGG:bta:338071 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS NextBio:20812521 Uniprot:P10881
Length = 404
Score = 186 (70.5 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 50/168 (29%), Positives = 88/168 (52%)
Query: 99 DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLT 157
+ G + L +I + +E+Y D NL +D+F + ++ + + + + +K N+L RLT
Sbjct: 3 ENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLT 62
Query: 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRT-------VVVQDKPDVDECTIYVEKLPPEA 208
D + +V+AL KSK L+E++ED TK+RR+ V + K DV ++Y++ P +A
Sbjct: 63 TDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDA 122
Query: 209 EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
D I+ G+V + + + KG F F + E A K +E
Sbjct: 123 ALDDIKEWLEDKGQVLNIQMRRTLHKA-FKGSIFAVFDSIESAKKFVE 169
Score = 125 (49.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 26/70 (37%), Positives = 47/70 (67%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y D NL +D+F + ++ + + + + +K N+L RLT D + +V+AL KSK L+
Sbjct: 21 IEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELM 80
Query: 58 EVTEDGTKVK 67
E++ED TK++
Sbjct: 81 EISEDKTKIR 90
>UNIPROTKB|E2RH09 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 OMA:ENAEMKS EMBL:AAEX03017743
RefSeq:XP_535952.2 ProteinModelPortal:E2RH09
Ensembl:ENSCAFT00000038572 GeneID:478787 KEGG:cfa:478787
Uniprot:E2RH09
Length = 406
Score = 183 (69.5 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 49/168 (29%), Positives = 88/168 (52%)
Query: 99 DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLT 157
+ G + L +I + +E+Y D NL +D+F + ++ + + + + +K N+L RLT
Sbjct: 3 ENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLT 62
Query: 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRT-------VVVQDKPDVDECTIYVEKLPPEA 208
D + +V+AL KSK L+E++ED TK+RR+ V + K DV ++Y++ P +A
Sbjct: 63 TDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDA 122
Query: 209 EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
D I+ G+V + + + KG F F + E A K ++
Sbjct: 123 TLDDIKEWLEDKGQVLNIQMRRTLHKA-FKGSIFAVFDSIESARKFVD 169
Score = 126 (49.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 56/273 (20%), Positives = 125/273 (45%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y D NL +D+F + ++ + + + + +K N+L RLT D + +V+AL KSK L+
Sbjct: 21 IEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELM 80
Query: 58 EVTEDGTKVKGNIIRHFL-VPISMETEASDN--------VDKDLSDLQR--KDGG---GR 103
E++ED TK++ + + V + + + D L D++ +D G
Sbjct: 81 EISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNI 140
Query: 104 HRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHD-PDD 162
++ L++ + F + DS +F Q+ + ++ + K + A+ + +
Sbjct: 141 QMRRTLHKAFKGSI-FAVFDSIESARKFVDTPDQKYKDTDLLILFKEDYFAKKNEERKQN 199
Query: 163 VVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTI-YVEKLPPEAEHDYIESVFSKYG 221
V+A ++K + E+ K+ + ++ + C + + L + + + +FS +G
Sbjct: 200 KVEAKLRAK--QEQEEKQKLAESAEIKSLEEKIGCLLKFSGDLDDQTCREDLHILFSSHG 257
Query: 222 KVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
++ ++ + G +G + KE KA
Sbjct: 258 EIKWIDFVR----GAKEGIILFKEKAKEALDKA 286
>UNIPROTKB|D6RF49 [details] [associations]
symbol:LARP7 "La-related protein 7" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR002344 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005737 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HGNC:HGNC:24912
ChiTaRS:LARP7 EMBL:AC106864 IPI:IPI00967495
ProteinModelPortal:D6RF49 SMR:D6RF49 Ensembl:ENST00000508577
ArrayExpress:D6RF49 Bgee:D6RF49 Uniprot:D6RF49
Length = 119
Score = 160 (61.4 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 37/119 (31%), Positives = 72/119 (60%)
Query: 80 METEAS--DNVDKDLSDLQRKD--GGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQL 135
METE+ + V ++ S ++K+ R R KQ+ I ++F+ D+NL KDRF +
Sbjct: 1 METESGNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQ 60
Query: 136 LQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKP 192
+++S + +++S+ + NK+ +LT D + +ALR S ++E+ +GT++RR + ++P
Sbjct: 61 IEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERP 119
Score = 124 (48.7 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 22/69 (31%), Positives = 47/69 (68%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE 58
++F+ D+NL KDRF + +++S + +++S+ + NK+ +LT D + +ALR S ++E
Sbjct: 42 VDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSSAVVE 101
Query: 59 VTEDGTKVK 67
+ +GT+++
Sbjct: 102 LDLEGTRIR 110
>DICTYBASE|DDB_G0281835 [details] [associations]
symbol:DDB_G0281835 species:44689 "Dictyostelium
discoideum" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102
dictyBase:DDB_G0281835 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 EMBL:AAFI02000043
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 RefSeq:XP_640449.1 ProteinModelPortal:Q54TE0
EnsemblProtists:DDB0204237 GeneID:8623262 KEGG:ddi:DDB_G0281835
InParanoid:Q54TE0 OMA:HITEFTE Uniprot:Q54TE0
Length = 381
Score = 130 (50.8 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 34/105 (32%), Positives = 60/105 (57%)
Query: 113 IMNLMEFYLSDSNLRKDRFFSQLLQESPE---IEVSVFLKCNKLARLTHD----PDDVVK 165
I L+EFY SDSNLRKD+F L+Q + I++S+ L+ K+ + ++ ++ +
Sbjct: 9 IKKLIEFYFSDSNLRKDKFLFNLIQTNQNDGWIDLSIILEFQKIKSVINENSLTEQELEQ 68
Query: 166 ALRKSKLLEVTEDGTKVRRTV-----VVQ-DKPDVDECTIYVEKL 204
+ SKLL + +D K++R + Q + ++DE TIY+E +
Sbjct: 69 VFKDSKLLILNQDKNKIKRIEWPIKELTQLEIKEIDEKTIYIEPI 113
Score = 108 (43.1 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE---IEVSVFLKCNKLARLTHD----PDDVVKALRK 53
+EFY SDSNLRKD+F L+Q + I++S+ L+ K+ + ++ ++ + +
Sbjct: 13 IEFYFSDSNLRKDKFLFNLIQTNQNDGWIDLSIILEFQKIKSVINENSLTEQELEQVFKD 72
Query: 54 SKLLEVTEDGTKVK 67
SKLL + +D K+K
Sbjct: 73 SKLLILNQDKNKIK 86
Score = 93 (37.8 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 193 DVDECTIYVEKLPPE-AEHDYIESVFSKYGKVT-----------YVSLPKFKSTGKLKGF 240
++DE TIY+E + + + D I + K+ ++S+PKF S LKGF
Sbjct: 102 EIDEKTIYIEPITNKISTPDLIRKLLLLEQKIENDNNNNNELIQHISIPKF-SDKTLKGF 160
Query: 241 AFVEFSTKEEAAKALE-LGLNP 261
AFVEFS K+ A + + + LNP
Sbjct: 161 AFVEFSNKDIANQTIRNIDLNP 182
>UNIPROTKB|F1S1V1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS EMBL:CU466304
Ensembl:ENSSSCT00000017354 Uniprot:F1S1V1
Length = 402
Score = 176 (67.0 bits), Expect = 4.8e-11, P = 4.8e-11
Identities = 47/165 (28%), Positives = 86/165 (52%)
Query: 99 DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLT 157
+ G + L +I + +E+Y D NL +D+F + ++ + + + + +K N+L RLT
Sbjct: 3 ENGDNEKLAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLT 62
Query: 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRT-------VVVQDKPDVDECTIYVEKLPPEA 208
D + +++AL KSK L+E++ED TK+RR+ V + K D+ ++YV+ P +A
Sbjct: 63 TDFNVIIEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDLKNRSVYVKGFPTDA 122
Query: 209 EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAK 253
D I+ G++ + + + KG F F + E A K
Sbjct: 123 TLDDIKDWLEDKGEILNIQMRRTLHK-TFKGSIFAVFDSIESAKK 166
Score = 124 (48.7 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 25/70 (35%), Positives = 47/70 (67%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y D NL +D+F + ++ + + + + +K N+L RLT D + +++AL KSK L+
Sbjct: 21 IEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIIEALSKSKAELM 80
Query: 58 EVTEDGTKVK 67
E++ED TK++
Sbjct: 81 EISEDKTKIR 90
>RGD|1592944 [details] [associations]
symbol:LOC680385 "similar to Sjogren syndrome antigen B"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:1592944 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 OrthoDB:EOG4C2HB3 IPI:IPI00767397
RefSeq:XP_001058361.1 RefSeq:XP_002726506.1 PRIDE:D3ZLH9
Ensembl:ENSRNOT00000015427 GeneID:680385 KEGG:rno:680385
UCSC:RGD:1592944 OMA:ATESEKC NextBio:718589 Uniprot:D3ZLH9
Length = 402
Score = 176 (67.0 bits), Expect = 4.8e-11, P = 4.8e-11
Identities = 48/168 (28%), Positives = 88/168 (52%)
Query: 99 DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLT 157
+ G + L +I + +E+Y D NL +D+F + ++ + + + +K N+L RLT
Sbjct: 3 ENGDNEKMAALEAKICHQIEYYFGDFNLPQDKFLKEQIKLDEGWVSLETMIKFNRLNRLT 62
Query: 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRT-------VVVQDKPDVDECTIYVEKLPPEA 208
D + +V+AL KSK L+EV+ D TK+RR+ V+ + K DV ++Y++ P +A
Sbjct: 63 TDFNVIVQALSKSKAKLMEVSADKTKIRRSPSRPLPEVMDEYKNDVKNRSVYIKGFPTDA 122
Query: 209 EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
D I+ G++ + + + K KG F F + + A K ++
Sbjct: 123 TLDDIKEWLDDKGQILNIQMRR-KLHKTFKGSIFAVFDSIQSAKKFVD 169
Score = 117 (46.2 bits), Expect = 0.00030, P = 0.00030
Identities = 26/70 (37%), Positives = 45/70 (64%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y D NL +D+F + ++ + + + +K N+L RLT D + +V+AL KSK L+
Sbjct: 21 IEYYFGDFNLPQDKFLKEQIKLDEGWVSLETMIKFNRLNRLTTDFNVIVQALSKSKAKLM 80
Query: 58 EVTEDGTKVK 67
EV+ D TK++
Sbjct: 81 EVSADKTKIR 90
>MGI|MGI:98423 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 MGI:MGI:98423 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:L00993
EMBL:BC003820 EMBL:Y07951 IPI:IPI00134300 RefSeq:NP_001103615.1
RefSeq:NP_033304.1 UniGene:Mm.10508 ProteinModelPortal:P32067
SMR:P32067 DIP:DIP-37706N IntAct:P32067 STRING:P32067
PhosphoSite:P32067 PaxDb:P32067 PRIDE:P32067
Ensembl:ENSMUST00000090852 Ensembl:ENSMUST00000166411 GeneID:20823
KEGG:mmu:20823 InParanoid:P32067 ChiTaRS:SSB NextBio:299565
Bgee:P32067 CleanEx:MM_SSB Genevestigator:P32067
GermOnline:ENSMUSG00000068882 Uniprot:P32067
Length = 415
Score = 175 (66.7 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 48/169 (28%), Positives = 87/169 (51%)
Query: 99 DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLT 157
+ G + L +I + +E+Y D NL +D+F + ++ + + + +K N+L RLT
Sbjct: 3 ENGDNEKMTALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLT 62
Query: 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRT-------VVVQDKPDVDECTIYVEKLPPEA 208
D + +V+AL KSK L+EV+ D TK+RR+ V + K DV ++Y++ P +A
Sbjct: 63 TDFNVIVQALSKSKAKLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDA 122
Query: 209 EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
D I+ G++ + + + KG F F + + A K +E+
Sbjct: 123 TLDDIKEWLDDKGQILNIQMRRTLHK-TFKGSIFAVFDSIQSAKKFVEI 170
Score = 117 (46.2 bits), Expect = 0.00032, P = 0.00032
Identities = 26/70 (37%), Positives = 45/70 (64%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y D NL +D+F + ++ + + + +K N+L RLT D + +V+AL KSK L+
Sbjct: 21 IEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKAKLM 80
Query: 58 EVTEDGTKVK 67
EV+ D TK++
Sbjct: 81 EVSADKTKIR 90
>UNIPROTKB|E1BVY8 [details] [associations]
symbol:LOC420093 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00510000048191 EMBL:AADN02072211 IPI:IPI00821190
Ensembl:ENSGALT00000041247 Uniprot:E1BVY8
Length = 173
Score = 151 (58.2 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 108 QLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVK 165
QL ++I++ +EFYLSD NL KD F + +Q++ + + + K+ LT D +
Sbjct: 76 QLIRRIVSQVEFYLSDENLAKDAFLLKHVQKNKLGFVSIKLLTSFKKVKYLTRDWRLTLY 135
Query: 166 ALRKSKLLEVTEDGTKVRRTVVVQD 190
ALR SKLLEV ++GTKVRR V + D
Sbjct: 136 ALRFSKLLEVNQEGTKVRRRVPIPD 160
Score = 121 (47.7 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE 58
+EFYLSD NL KD F + +Q++ + + + K+ LT D + ALR SKLLE
Sbjct: 85 VEFYLSDENLAKDAFLLKHVQKNKLGFVSIKLLTSFKKVKYLTRDWRLTLYALRFSKLLE 144
Query: 59 VTEDGTKVKGNI 70
V ++GTKV+ +
Sbjct: 145 VNQEGTKVRRRV 156
>RGD|620804 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IMP] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 RGD:620804 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0030529 GO:GO:0008033
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR014886 Pfam:PF08777 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OrthoDB:EOG4C2HB3 EMBL:X67859 IPI:IPI00212219
PIR:JC1494 UniGene:Rn.24494 ProteinModelPortal:P38656 SMR:P38656
DIP:DIP-46500N STRING:P38656 PhosphoSite:P38656 PRIDE:P38656
UCSC:RGD:620804 InParanoid:P38656 ArrayExpress:P38656
Genevestigator:P38656 GermOnline:ENSRNOG00000007998 Uniprot:P38656
Length = 415
Score = 170 (64.9 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 47/168 (27%), Positives = 86/168 (51%)
Query: 99 DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLT 157
+ G + L +I + +E+Y D NL +D+F + ++ + + + +K N+L RLT
Sbjct: 3 ENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLT 62
Query: 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRT-------VVVQDKPDVDECTIYVEKLPPEA 208
D + +V+AL KSK L+EV+ D TK+RR+ V + K DV ++Y++ P +A
Sbjct: 63 TDFNVIVQALSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDA 122
Query: 209 EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
D I+ G++ + + + KG F F + + A K ++
Sbjct: 123 TLDDIKEWLDDKGQILNIQMRRTLHK-TFKGSIFAVFDSIQSAKKFVD 169
Score = 117 (46.2 bits), Expect = 0.00032, P = 0.00032
Identities = 26/70 (37%), Positives = 45/70 (64%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y D NL +D+F + ++ + + + +K N+L RLT D + +V+AL KSK L+
Sbjct: 21 IEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKANLM 80
Query: 58 EVTEDGTKVK 67
EV+ D TK++
Sbjct: 81 EVSADKTKIR 90
>UNIPROTKB|Q66HM7 [details] [associations]
symbol:Ssb "Sjogren syndrome antigen B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
RGD:620804 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 EMBL:CH473949 InterPro:IPR006630 PROSITE:PS50961
KO:K11090 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 CTD:6741
HOVERGEN:HBG001407 OMA:ENAEMKS UniGene:Rn.24494 EMBL:BC081780
IPI:IPI00471902 RefSeq:NP_112381.2 SMR:Q66HM7 STRING:Q66HM7
Ensembl:ENSRNOT00000011174 GeneID:81783 KEGG:rno:81783
InParanoid:Q66HM7 NextBio:615635 Genevestigator:Q66HM7
Uniprot:Q66HM7
Length = 415
Score = 170 (64.9 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 47/168 (27%), Positives = 86/168 (51%)
Query: 99 DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLT 157
+ G + L +I + +E+Y D NL +D+F + ++ + + + +K N+L RLT
Sbjct: 3 ENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLT 62
Query: 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRT-------VVVQDKPDVDECTIYVEKLPPEA 208
D + +V+AL KSK L+EV+ D TK+RR+ V + K DV ++Y++ P +A
Sbjct: 63 TDFNVIVQALSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDA 122
Query: 209 EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
D I+ G++ + + + KG F F + + A K ++
Sbjct: 123 TLDDIKEWLDDKGQILNIQMRRTLHK-TFKGSIFAVFDSIQSAKKFVD 169
Score = 117 (46.2 bits), Expect = 0.00032, P = 0.00032
Identities = 26/70 (37%), Positives = 45/70 (64%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y D NL +D+F + ++ + + + +K N+L RLT D + +V+AL KSK L+
Sbjct: 21 IEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKANLM 80
Query: 58 EVTEDGTKVK 67
EV+ D TK++
Sbjct: 81 EVSADKTKIR 90
>UNIPROTKB|F1NYE7 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 InterPro:IPR014886
Pfam:PF08777 GeneTree:ENSGT00530000063464 OMA:ENAEMKS
EMBL:AADN02020271 IPI:IPI00680677 Ensembl:ENSGALT00000033213
ArrayExpress:F1NYE7 Uniprot:F1NYE7
Length = 404
Score = 169 (64.5 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 50/170 (29%), Positives = 86/170 (50%)
Query: 99 DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLT 157
+ G L +I +E+Y + NL +D+F + ++ + + + V +K N+L+RL+
Sbjct: 3 ENGDGENMSILESKICQQIEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLS 62
Query: 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRT-------VVVQDKPDVDECTIYVEKLPPEA 208
D +V+ALRKSK L+E+ ED TK+RR+ + Q K + ++YV+ P +A
Sbjct: 63 KDFGVIVEALRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLDA 122
Query: 209 EHDYIESVFSKYGKVTYVSLPK-FKSTGKLKGFAFVEFSTKEEAAKALEL 257
D I+ G V + + + + T KG F F + E A K E+
Sbjct: 123 TLDDIKEWLEDKGPVENIQMRRTLQKT--FKGSIFAVFDSVESAKKFTEI 170
Score = 125 (49.1 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 26/70 (37%), Positives = 47/70 (67%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y + NL +D+F + ++ + + + V +K N+L+RL+ D +V+ALRKSK L+
Sbjct: 21 IEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLSKDFGVIVEALRKSKTGLM 80
Query: 58 EVTEDGTKVK 67
E+ ED TK++
Sbjct: 81 EINEDKTKIR 90
>DICTYBASE|DDB_G0281763 [details] [associations]
symbol:DDB_G0281763 "Lupus La protein" species:44689
"Dictyostelium discoideum" [GO:0045335 "phagocytic vesicle"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 SMART:SM00360
dictyBase:DDB_G0281763 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 EMBL:AAFI02000042 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
Pfam:PF05383 SMART:SM00715 InterPro:IPR014886 Pfam:PF08777
RefSeq:XP_640625.1 ProteinModelPortal:Q54TG6 STRING:Q54TG6
EnsemblProtists:DDB0233755 GeneID:8623235 KEGG:ddi:DDB_G0281763
InParanoid:Q54TG6 OMA:NDDANAC ProtClustDB:CLSZ2430537
Uniprot:Q54TG6
Length = 354
Score = 166 (63.5 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 45/148 (30%), Positives = 76/148 (51%)
Query: 112 QIMNLMEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRK 169
QI+ +E+Y SDSN +D+F ++ + I + V N++ ++ D + +AL+K
Sbjct: 8 QILKQVEYYFSDSNFPRDKFLRSEAAKNVDNYISIDVIASFNRMKTISTDLQLITEALKK 67
Query: 170 SKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYG--KVTYVS 227
S L+V+EDG VRR + + D + T+Y + P + + ++ F+ G KV V
Sbjct: 68 STRLQVSEDGKMVRRLDPLPENIDCGK-TLYSKGWPEDTTIEKVQEFFNANGGYKVVSVR 126
Query: 228 LPKFKSTGKLKGFAFVEFSTKEEAAKAL 255
L K KS KG +F T+E K +
Sbjct: 127 LRK-KSDKSFKGSFLADFETEEIVNKII 153
Score = 103 (41.3 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE 58
+E+Y SDSN +D+F ++ + I + V N++ ++ D + +AL+KS L+
Sbjct: 13 VEYYFSDSNFPRDKFLRSEAAKNVDNYISIDVIASFNRMKTISTDLQLITEALKKSTRLQ 72
Query: 59 VTEDGTKVK 67
V+EDG V+
Sbjct: 73 VSEDGKMVR 81
Score = 53 (23.7 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 213 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
I+ +FS+YG+V +V + G V + T E +A+E
Sbjct: 246 IKEIFSQYGEVQFVGYNSDEENGS------VRYKTAESCKRAIE 283
>UNIPROTKB|Q5ZKS1 [details] [associations]
symbol:SSB "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 GeneTree:ENSGT00530000063464 HOGENOM:HOG000006947
OrthoDB:EOG4C2HB3 EMBL:AADN02020271 EMBL:AJ720013 IPI:IPI00599030
UniGene:Gga.42753 UniGene:Gga.53297 SMR:Q5ZKS1 STRING:Q5ZKS1
Ensembl:ENSGALT00000015751 HOVERGEN:HBG059895 InParanoid:Q5ZKS1
Uniprot:Q5ZKS1
Length = 137
Score = 147 (56.8 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 41/135 (30%), Positives = 71/135 (52%)
Query: 99 DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLT 157
+ G L +I +E+Y + NL +D+F + ++ + + + V +K N+L+RL+
Sbjct: 3 ENGDGENMSILESKICQQIEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLS 62
Query: 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRT-------VVVQDKPDVDECTIYVEKLPPEA 208
D +V+ALRKSK L+E+ ED TK+RR+ + Q K + ++YV+ P +A
Sbjct: 63 KDFGVIVEALRKSKTGLMEINEDKTKIRRSPNKPLPELNDQYKAAIKNRSVYVKGFPLDA 122
Query: 209 EHDYIESVFSKYGKV 223
D I+ G V
Sbjct: 123 TLDDIKEWLEDKGPV 137
Score = 125 (49.1 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 26/70 (37%), Positives = 47/70 (67%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y + NL +D+F + ++ + + + V +K N+L+RL+ D +V+ALRKSK L+
Sbjct: 21 IEYYFGNHNLPRDKFLKEQIKLDDGWVPLEVMIKFNRLSRLSKDFGVIVEALRKSKTGLM 80
Query: 58 EVTEDGTKVK 67
E+ ED TK++
Sbjct: 81 EINEDKTKIR 90
>UNIPROTKB|E9PFL9 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
EMBL:AC009967 HGNC:HGNC:11316 IPI:IPI00917205
ProteinModelPortal:E9PFL9 SMR:E9PFL9 PRIDE:E9PFL9
Ensembl:ENST00000413002 ArrayExpress:E9PFL9 Bgee:E9PFL9
Uniprot:E9PFL9
Length = 134
Score = 146 (56.5 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 36/113 (31%), Positives = 65/113 (57%)
Query: 99 DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLT 157
+ G + L +I + +E+Y D NL +D+F + ++ + + + + +K N+L RLT
Sbjct: 3 ENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLT 62
Query: 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRT-------VVVQDKPDVDECTIYV 201
D + +V+AL KSK L+E++ED TK+RR+ V + K DV ++Y+
Sbjct: 63 TDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYI 115
Score = 125 (49.1 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 26/70 (37%), Positives = 47/70 (67%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y D NL +D+F + ++ + + + + +K N+L RLT D + +V+AL KSK L+
Sbjct: 21 IEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELM 80
Query: 58 EVTEDGTKVK 67
E++ED TK++
Sbjct: 81 EISEDKTKIR 90
>UNIPROTKB|F1MAB1 [details] [associations]
symbol:Ssb "Lupus La protein homolog" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 RGD:620804
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 IPI:IPI00196913 PRIDE:F1MAB1
Ensembl:ENSRNOT00000010625 ArrayExpress:F1MAB1 Uniprot:F1MAB1
Length = 381
Score = 163 (62.4 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 47/167 (28%), Positives = 84/167 (50%)
Query: 99 DGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLT 157
+ G + L +I + +E+Y D NL +D+F + ++ + + + +K N+L RLT
Sbjct: 3 ENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLT 62
Query: 158 HDPDDVVKALRKSK--LLEVTEDGTKVRRT-------VVVQDKPDVDECTIYVEKLPPEA 208
D + +V+AL KSK L+EV+ D TK+RR+ V + K DV ++Y++ P +A
Sbjct: 63 TDFNVIVQALSKSKANLMEVSADKTKIRRSPSRPLPEVTDEYKNDVKNRSVYIKGFPTDA 122
Query: 209 EHDYIESVFSKYGKVTYVSLPK-FKSTGKLKGFAFVEFSTKEEAAKA 254
D I+ G++ + + + T K FA K+ +A
Sbjct: 123 TLDDIKEWLDDKGQILNIQMRRTLHKTFKADYFAKKNEERKQSKVEA 169
Score = 118 (46.6 bits), Expect = 0.00021, P = 0.00021
Identities = 46/168 (27%), Positives = 81/168 (48%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y D NL +D+F + ++ + + + +K N+L RLT D + +V+AL KSK L+
Sbjct: 21 IEYYFGDFNLPRDKFLKEQIKLDEGWVPLETMIKFNRLNRLTTDFNVIVQALSKSKANLM 80
Query: 58 EVTEDGTKVKGNIIRHFLVPISMETEASDNVDKDLSDLQR---KDGGGRHRKKQLYQ--Q 112
EV+ D TK++ + R P+ T+ N K+ S + D K+ L Q
Sbjct: 81 EVSADKTKIRRSPSR----PLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLDDKGQ 136
Query: 113 IMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDP 160
I+N+ + D +F++ +E + +V LK + H P
Sbjct: 137 ILNIQMRRTLHKTFKAD-YFAKKNEERKQSKVEAKLKAKQEHEGRHKP 183
>FB|FBgn0011638 [details] [associations]
symbol:La "La autoantigen-like" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0008098
"5S rRNA primary transcript binding" evidence=NAS;IDA] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:AE014134 GO:GO:0000166 GO:GO:0003677 GO:GO:0003729
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
EMBL:U07652 EMBL:L32988 PIR:A53773 PIR:A53781 RefSeq:NP_477014.1
RefSeq:NP_724257.1 UniGene:Dm.4836 ProteinModelPortal:P40796
SMR:P40796 DIP:DIP-19001N IntAct:P40796 MINT:MINT-785398
STRING:P40796 PaxDb:P40796 EnsemblMetazoa:FBtr0081373
EnsemblMetazoa:FBtr0081374 GeneID:35305 KEGG:dme:Dmel_CG10922
CTD:35305 FlyBase:FBgn0011638 InParanoid:P40796 OMA:EHNEERR
OrthoDB:EOG4GF1X7 PhylomeDB:P40796 GenomeRNAi:35305 NextBio:792866
Bgee:P40796 GermOnline:CG10922 GO:GO:0008098 Uniprot:P40796
Length = 390
Score = 162 (62.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 51/192 (26%), Positives = 98/192 (51%)
Query: 80 METEASDNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQES 139
+E + D KD + + GG ++++ I+ +E+Y D+NL +D+F + + ++
Sbjct: 25 LEAKNGD-AKKDPAPAAEEAAGGFTKQERA---IIRQVEYYFGDANLNRDKFLREQIGKN 80
Query: 140 PE--IEVSVFLKCNKLARLTHDPDDVVKALRKSK--LLEVTEDGTKVRRTVV-------V 188
+ + +SV + +LA L+ D ++V AL KS+ L+E++ED +RR
Sbjct: 81 EDGWVPLSVLVTFKRLASLSTDLSEIVAALNKSEEGLVEISEDKLSLRRHPERPIPEHNE 140
Query: 189 QDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKF--KSTG--KLKGFAFVE 244
+ + ++ E T Y + P +++ + + Y KV +++ K K T K KG F+
Sbjct: 141 ERRKEIQERTAYAKGFPLDSQISELLDFAANYDKVVNLTMRKHYDKPTKSYKFKGSIFLT 200
Query: 245 FSTKEEAAKALE 256
F TK++A LE
Sbjct: 201 FETKDQAKAFLE 212
>POMBASE|SPAC57A10.10c [details] [associations]
symbol:sla1 "La protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006386 "termination of RNA
polymerase III transcription" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0034307 "regulation
of ascospore formation" evidence=IMP] [GO:0034414 "tRNA 3'-trailer
cleavage, endonucleolytic" evidence=IMP] [GO:0042779 "tRNA
3'-trailer cleavage" evidence=IGI] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC57A10.10c GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0030529 GO:GO:0031137 InterPro:IPR006630
PROSITE:PS50961 EMBL:AF022949 EMBL:AB011371 PIR:T38937 PIR:T43542
RefSeq:NP_593315.1 ProteinModelPortal:P87058 STRING:P87058
PRIDE:P87058 EnsemblFungi:SPAC57A10.10c.1 GeneID:2541530
KEGG:spo:SPAC57A10.10c eggNOG:COG5193 HOGENOM:HOG000113277
KO:K11090 OMA:FFEENAG OrthoDB:EOG43JGF6 NextBio:20802627
GO:GO:0034307 GO:GO:0006386 GO:GO:0034414 Pfam:PF05383
SMART:SM00715 Uniprot:P87058
Length = 298
Score = 157 (60.3 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 57/199 (28%), Positives = 92/199 (46%)
Query: 89 DKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPE-IEVSVF 147
+K ++K+ G+ +++ +EFY SD+NL D+F Q++ + +
Sbjct: 43 EKKEETTEKKEDDGKKDLSFDEAEVLKQVEFYFSDTNLPHDKFLWTTSQKNDGWVPIQTI 102
Query: 148 LKCNKLARLTHDP-DDVVKALRKS-KLLEVTEDGTKVRRTV--VVQDKPDVDECTIYVEK 203
++ R P + +V ALRKS +LLEV E G KVRR + V D V E ++Y +
Sbjct: 103 ANFKRMRRF--QPLEAIVNALRKSPELLEVDEAGEKVRRMIPLVRVDNKSVMERSVYCKG 160
Query: 204 LPPEAEHDYI--ESVFSKY-GKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLN 260
E + I E F + G ++ V + + K KG FVEF + A K LE +
Sbjct: 161 FGDEKDDTQIALEKFFEENAGPISAVRMRR-DDDKKFKGSVFVEFKEPDVANKFLEK-VK 218
Query: 261 PCPPDYQSSILTTTSRLSF 279
P + LT S+ +
Sbjct: 219 TAPLKWGEDELTIMSKKEY 237
>UNIPROTKB|E9PGX9 [details] [associations]
symbol:SSB "Lupus La protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 EMBL:AC009967 HGNC:HGNC:11316
IPI:IPI00917386 ProteinModelPortal:E9PGX9 SMR:E9PGX9 PRIDE:E9PGX9
Ensembl:ENST00000417292 ArrayExpress:E9PGX9 Bgee:E9PGX9
Uniprot:E9PGX9
Length = 120
Score = 139 (54.0 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 41/118 (34%), Positives = 64/118 (54%)
Query: 148 LKCNKLARLTHDPDDVVKALRKSK--LLEVTEDGTKVRRT-------VVVQDKPDVDECT 198
+K N+L RLT D + +V+AL KSK L+E++ED TK+RR+ V + K DV +
Sbjct: 2 IKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRS 61
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+Y++ P +A D I+ G+V + + + KG FV F + E A K +E
Sbjct: 62 VYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKA-FKGSIFVVFDSIESAKKFVE 118
>ZFIN|ZDB-GENE-030131-223 [details] [associations]
symbol:ssb "Sjogren syndrome antigen B (autoantigen
La)" species:7955 "Danio rerio" [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-223 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
GeneTree:ENSGT00530000063464 CTD:6741 HOGENOM:HOG000006947
HOVERGEN:HBG001407 OMA:ENAEMKS OrthoDB:EOG4C2HB3 EMBL:CABZ01067486
EMBL:BC045392 IPI:IPI00506214 RefSeq:NP_955841.1 UniGene:Dr.3463
SMR:Q7ZTI0 STRING:Q7ZTI0 Ensembl:ENSDART00000041627 GeneID:321504
KEGG:dre:321504 InParanoid:Q7ZTI0 NextBio:20807405 Uniprot:Q7ZTI0
Length = 401
Score = 154 (59.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 48/156 (30%), Positives = 79/156 (50%)
Query: 109 LYQQIMNLMEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKAL 167
L +++ +E+Y D NL +D+F + LQ + + + LK N+L LT + +V++L
Sbjct: 10 LEKKVAEQIEYYFGDHNLPRDKFLKEQLQLDDGWVPLETMLKFNRLKSLTSEESVIVESL 69
Query: 168 RKSK--LLEVTEDGTKVRRTV---VVQDKPDVDEC----TIYVEKLPPEAEHDYIESVFS 218
KSK LLE++ED TK+RR + ++ + + +IY++ P E D ++ +
Sbjct: 70 LKSKTGLLEISEDKTKIRRDPNKPLPENNEEYRDALKHKSIYMKGFPLETTLDDVKEWLA 129
Query: 219 KYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
G + L K KG F T EEAAKA
Sbjct: 130 DKGTFENIYLRKGPQK-TFKGSIFAVLET-EEAAKA 163
Score = 123 (48.4 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQ-ESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y D NL +D+F + LQ + + + LK N+L LT + +V++L KSK LL
Sbjct: 18 IEYYFGDHNLPRDKFLKEQLQLDDGWVPLETMLKFNRLKSLTSEESVIVESLLKSKTGLL 77
Query: 58 EVTEDGTKVK 67
E++ED TK++
Sbjct: 78 EISEDKTKIR 87
>WB|WBGene00016653 [details] [associations]
symbol:C44E4.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0040010
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
EMBL:FO080862 GO:GO:0030529 GO:GO:0040027 InterPro:IPR006630
PROSITE:PS50961 eggNOG:COG5193 KO:K11090 Pfam:PF05383 SMART:SM00715
InterPro:IPR014886 Pfam:PF08777 GeneTree:ENSGT00530000063464
PIR:T30953 RefSeq:NP_491411.1 ProteinModelPortal:O01806 SMR:O01806
STRING:O01806 PaxDb:O01806 EnsemblMetazoa:C44E4.4 GeneID:172070
KEGG:cel:CELE_C44E4.4 UCSC:C44E4.4 CTD:172070 WormBase:C44E4.4
HOGENOM:HOG000022257 InParanoid:O01806 OMA:KSANSEI NextBio:873891
Uniprot:O01806
Length = 396
Score = 152 (58.6 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 39/155 (25%), Positives = 81/155 (52%)
Query: 111 QQIMNLMEFYLSDSNLRKDRFFSQLLQESPE-IEVSVFLKCNKLARLTHDPDDVVKALRK 169
Q+I+ +E+Y + NL +D+F + L+E + ++ L N+LA ++ D + + A++
Sbjct: 14 QKIIKQLEYYFGNINLPRDKFLQEKLKEDDGWVPITTMLNFNRLASISKDTEKIANAVKN 73
Query: 170 SK--LLEVTEDGTKVRRTV---VVQDKPD----VDECTIYVEKLPPEAEHDYIESVFSKY 220
S ++ V+ED K+RR V ++ + + T+Y++ + + D I +++
Sbjct: 74 SGSGIISVSEDNQKIRRNEENPVPENSLEYWQKIKHRTVYMKGFSTDTQLDDIIQWANQF 133
Query: 221 GKVTYVSLPKFKSTGK-LKGFAFVEFSTKEEAAKA 254
G+ V + + K + KG F+ + T+EEA A
Sbjct: 134 GETENVLMRRLKPGDRTFKGSVFITYKTREEAEAA 168
Score = 103 (41.3 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 20/72 (27%), Positives = 42/72 (58%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE-IEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y + NL +D+F + L+E + ++ L N+LA ++ D + + A++ S ++
Sbjct: 20 LEYYFGNINLPRDKFLQEKLKEDDGWVPITTMLNFNRLASISKDTEKIANAVKNSGSGII 79
Query: 58 EVTEDGTKVKGN 69
V+ED K++ N
Sbjct: 80 SVSEDNQKIRRN 91
Score = 51 (23.0 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 24/93 (25%), Positives = 41/93 (44%)
Query: 201 VEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAA-KALELGL 259
V+ L P++ D I++ F +G V YV+ ++ GK A + F+ E A KA +
Sbjct: 235 VDGLGPDSTIDSIKTFFKLHGSVGYVA---HENGGKT---AEIRFNNDSEGAQKAWD--- 285
Query: 260 NPCPPDYQSSILTTTSRLSFGITPLGFESGGWW 292
N ++ + LS + G E +W
Sbjct: 286 NAVAAGTDGKVILQEAELSARVLD-GEEEEKYW 317
>CGD|CAL0004304 [details] [associations]
symbol:orf19.2795 species:5476 "Candida albicans" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000049 "tRNA binding" evidence=IEA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IEA] [GO:0034307
"regulation of ascospore formation" evidence=IEA] [GO:0042779 "tRNA
3'-trailer cleavage" evidence=IEA] InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 CGD:CAL0004304 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 EMBL:AACQ01000185 RefSeq:XP_711737.1
ProteinModelPortal:Q59PU8 STRING:Q59PU8 GeneID:3646665
KEGG:cal:CaO19.2795 Uniprot:Q59PU8
Length = 324
Score = 144 (55.7 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 49/176 (27%), Positives = 89/176 (50%)
Query: 111 QQIMNLMEFYLSDSNLRKDRFFSQLLQESPE-IEVSVFLKCNKLARLTHDPDD-VVKALR 168
+++ +EFY SDSNL+ D+F ++ + + +E+ L ++ + + P+D V+ AL+
Sbjct: 13 EKVRKQVEFYFSDSNLQTDKFLWKIYESNDGWVELKTILTFGRMRQ--YRPEDKVISALK 70
Query: 169 KSKLLEVTEDGTKVRRTVVVQDKPDVDEC----TIYVEKLPPEAEHDYIES-----VFSK 219
+SK L ++ + +RR ++D +V TI++E P + D +E+ V +
Sbjct: 71 ESKKLVLSANNDMIRRKDPIKDFNEVKNTRKRNTIHIEGFPKDLSQDDVENWVNEKVIVQ 130
Query: 220 YGKVTYV-SLPKFKSTGKLKGFAFV--EFSTKEEAAKALELGLNPCPPDYQSSILT 272
K V S+ + KS K + F V EF T+E+A E LN Y I++
Sbjct: 131 LPKEKEVCSIRRIKSRAKKEFFGVVDIEFKTQEDA----EFILNNVELSYPEGIIS 182
>TAIR|locus:2089508 [details] [associations]
symbol:LARP6c "La related protein 6c" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002344 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR009818
Pfam:PF07145 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 KO:K15191 HOGENOM:HOG000244026 EMBL:AP002041
IPI:IPI00538604 RefSeq:NP_188540.1 UniGene:At.53384
ProteinModelPortal:Q9LHL3 SMR:Q9LHL3 PRIDE:Q9LHL3
EnsemblPlants:AT3G19090.1 GeneID:821444 KEGG:ath:AT3G19090
TAIR:At3g19090 eggNOG:NOG304440 InParanoid:Q9LHL3 OMA:FVPRSHT
PhylomeDB:Q9LHL3 ProtClustDB:CLSN2684555 Genevestigator:Q9LHL3
Uniprot:Q9LHL3
Length = 455
Score = 141 (54.7 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 45/159 (28%), Positives = 77/159 (48%)
Query: 112 QIMNLMEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRK 169
+I+ +E+ +D +L + S+ + + PE + VS K+ LT + V ALR
Sbjct: 147 KIVKQVEYQFTDMSLLANESISKHISKDPEGYVPVSYIASTKKIKALTSNHHLVSLALRS 206
Query: 170 SKLLEVTEDGTKVRRT--VVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVS 227
S L V+EDG KV+RT +D+ ++ T+ E LP + + +E +F G V +
Sbjct: 207 SSKLVVSEDGKKVKRTSQFTDRDREELQGRTVVAENLPDDHSYQNLEKIFGVVGNVKAIR 266
Query: 228 L--PKFKSTGKLKG-F-------AFVEFSTKEEAAKALE 256
+ P ++ + KG F A +E+ A KA+E
Sbjct: 267 ICHPPESNSSRPKGDFLMSNKIHALIEYDNTVIADKAVE 305
>ASPGD|ASPL0000060980 [details] [associations]
symbol:AN1045 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:AACD01000016
EMBL:BN001308 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
OrthoDB:EOG43JGF6 Pfam:PF05383 SMART:SM00715 RefSeq:XP_658649.1
ProteinModelPortal:Q5BEI5 STRING:Q5BEI5
EnsemblFungi:CADANIAT00001597 GeneID:2876822 KEGG:ani:AN1045.2
HOGENOM:HOG000206315 OMA:EVQKDAR Uniprot:Q5BEI5
Length = 400
Score = 138 (53.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 56/169 (33%), Positives = 80/169 (47%)
Query: 112 QIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSV-FLKCNKLARLTHDPDDVVKALRKS 170
+I +EFY SDSNL D+F + S V + L K R +V+AL+ S
Sbjct: 108 EIRKQVEFYFSDSNLPMDKFLLSKVGGSKNNPVPLELLHSFKRMRRFQPFSAIVEALKNS 167
Query: 171 KLLEVTEDGTKVRRTV----VVQDK--PDV-----DEC---TIYVEKLPPEAEHDY--IE 214
+ LE+T++ T VRR V V+D P V D+ +IY + E IE
Sbjct: 168 ETLELTDNDTAVRRKVPLPETVKDTHDPTVVKVFEDKAMARSIYAKGFGEETPTTQLDIE 227
Query: 215 SVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCP 263
+ F+ YG + + L + KG FVEF++ EE KA L L+P P
Sbjct: 228 AFFAPYGPINAIRLRRTNEK-YFKGSVFVEFAS-EEKQKAF-LELDPMP 273
>SGD|S000002209 [details] [associations]
symbol:LHP1 "RNA binding protein required for maturation of
tRNA and U6 snRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0000049 "tRNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0008033 "tRNA processing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302 PROSITE:PS50102
SMART:SM00360 SGD:S000002209 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006938 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0030529 GO:GO:0008033 GO:GO:0000049
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 KO:K11090
OrthoDB:EOG43JGF6 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:L33023 EMBL:Z74099 EMBL:AY558373
EMBL:L13282 EMBL:X80801 PIR:B48600 RefSeq:NP_010232.1
ProteinModelPortal:P33399 SMR:P33399 DIP:DIP-6444N IntAct:P33399
MINT:MINT-652314 STRING:P33399 PaxDb:P33399 PeptideAtlas:P33399
EnsemblFungi:YDL051W GeneID:851509 KEGG:sce:YDL051W CYGD:YDL051w
OMA:NDGWVEL NextBio:968869 Genevestigator:P33399 GermOnline:YDL051W
Uniprot:P33399
Length = 275
Score = 134 (52.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 43/165 (26%), Positives = 77/165 (46%)
Query: 108 QLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPE-IEVSVFLKCNKLARLTHDPDDVVKA 166
++ + + +EFY S+ N DRF +++ + +S N++ + D V++A
Sbjct: 28 EVLDRCLKQVEFYFSEFNFPYDRFLRTTAEKNDGWVPISTIATFNRMKKY-RPVDKVIEA 86
Query: 167 LRKSKLLEVTEDGTKVRRTVVVQ------DKPDVDECTIYVEKLP---------PEAEHD 211
LR S++LEV+ DG V+R V + + + ++ T+ V P PE + +
Sbjct: 87 LRSSEILEVSADGENVKRRVPLDLTAARNARIEQNQRTLAVMNFPHEDVEASQIPELQEN 146
Query: 212 YIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+E+ F K G++ V L + K G VEF T E L+
Sbjct: 147 -LEAFFKKLGEINQVRLRRDHRNKKFNGTVLVEFKTIPECEAFLK 190
>TAIR|locus:2125702 [details] [associations]
symbol:La1 "La protein 1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS;IDA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005618 "cell wall"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0000478 "endonucleolytic cleavage
involved in rRNA processing" evidence=RCA] [GO:0006406 "mRNA export
from nucleus" evidence=RCA] [GO:0006606 "protein import into
nucleus" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] [GO:0009561 "megagametogenesis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0048825
"cotyledon development" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005618 GO:GO:0005654 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR006630 PROSITE:PS50961 KO:K11090 Pfam:PF05383
SMART:SM00715 HSSP:P05455 InterPro:IPR014886 Pfam:PF08777
EMBL:AY056237 IPI:IPI00530410 RefSeq:NP_567904.1 UniGene:At.2236
ProteinModelPortal:Q93ZV7 SMR:Q93ZV7 STRING:Q93ZV7 PRIDE:Q93ZV7
EnsemblPlants:AT4G32720.1 GeneID:829408 KEGG:ath:AT4G32720
TAIR:At4g32720 InParanoid:Q93ZV7 OMA:LPRDNFL PhylomeDB:Q93ZV7
ProtClustDB:CLSN2689721 Genevestigator:Q93ZV7 Uniprot:Q93ZV7
Length = 433
Score = 137 (53.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 35/109 (32%), Positives = 59/109 (54%)
Query: 160 PDDVVKA----LRKSKLLEVTEDGTKVRRTVVVQDKPDVDEC----TIYVEKLPPEAEHD 211
P+D +KA LR S L++++DG KV R+ + D+ E T+ + + +
Sbjct: 71 PEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAASPFSYDVKRE 130
Query: 212 YIESVFSKYGKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEAAKALELGL 259
+ES FS+YGKV V +P+ + ++ G A VEF T+E+A ++ L
Sbjct: 131 DVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMKQNL 179
Score = 106 (42.4 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 34/98 (34%), Positives = 51/98 (52%)
Query: 113 IMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCN--------KLARLTHD--PDD 162
++ +EFY SDSNL D F + + ES + VS+ L C+ KL D P+D
Sbjct: 14 VLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDSKGDDIPED 73
Query: 163 VVKA----LRKSKLLEVTEDGTKVRRTVVVQDKPDVDE 196
+KA LR S L++++DG KV R+ + D+ E
Sbjct: 74 TIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIE 111
Score = 97 (39.2 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 31/80 (38%), Positives = 43/80 (53%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCN--------KLARLTHD--PDDVVKA 50
+EFY SDSNL D F + + ES + VS+ L C+ KL D P+D +KA
Sbjct: 18 VEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYLKLGDSKGDDIPEDTIKA 77
Query: 51 ----LRKSKLLEVTEDGTKV 66
LR S L++++DG KV
Sbjct: 78 VADTLRTSSALKISDDGKKV 97
Score = 58 (25.5 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 213 IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKAL 255
+++VF K+G V +V TG L+ F E S K AA L
Sbjct: 319 LKAVFGKFGDVKFVDFKMGSETGYLR-FDEPEASQKARAAAVL 360
>WB|WBGene00004387 [details] [associations]
symbol:rnp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0009790 "embryo development" evidence=IMP] [GO:0001703
"gastrulation with mouth forming first" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0005737 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003723 GO:GO:0006396 GO:GO:0040035 GO:GO:0040022 HSSP:Q9V535
eggNOG:COG0724 GeneTree:ENSGT00550000074641 GO:GO:0001703
EMBL:Z32683 HOGENOM:HOG000183826 KO:K12876 PIR:F88427
RefSeq:NP_497891.1 ProteinModelPortal:Q21832 SMR:Q21832
DIP:DIP-26500N IntAct:Q21832 MINT:MINT-1100537 STRING:Q21832
PaxDb:Q21832 EnsemblMetazoa:R07E5.14.1 EnsemblMetazoa:R07E5.14.2
EnsemblMetazoa:R07E5.14.3 GeneID:175572 KEGG:cel:CELE_R07E5.14
UCSC:R07E5.14.2 CTD:175572 WormBase:R07E5.14 InParanoid:Q21832
OMA:NIHEEAT NextBio:888726 Uniprot:Q21832
Length = 142
Score = 115 (45.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAK 253
V+ ++V + EA D + FS+YGK+ + L + TG LKG+A VE+ T++EA +
Sbjct: 52 VEGWIVFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANE 111
Query: 254 ALE 256
A++
Sbjct: 112 AID 114
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 113 (44.8 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
T++V+ + + + + FS+YG+V V + K + KGFA+V FS+KEEA KAL L
Sbjct: 22 TLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL-L 80
Query: 258 GLNPCPPDYQSSILTTT 274
LN D + IL TT
Sbjct: 81 ELNAQLVDGRVVILDTT 97
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 137 (53.3 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 190 DKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 249
D+ + IYV+ + PE D ++F KYG VT SL + + TGK +GF FV F++ E
Sbjct: 235 DEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHE 294
Query: 250 EAAKALE 256
+A+KA++
Sbjct: 295 DASKAVQ 301
>UNIPROTKB|I3LLT9 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
GeneTree:ENSGT00600000084414 EMBL:CU915556
Ensembl:ENSSSCT00000027399 OMA:SINGKEM Uniprot:I3LLT9
Length = 94
Score = 112 (44.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 251
T+YV LP ++ + +FSKYGKV V++ K K T K KG AF+ F K+ A
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 111 (44.1 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 192 PDVDECT-IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
PDV+ T + V+ L D + VF KYG+V V +P+ + T + +GFAFV F K +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 251 AAKALE 256
A A++
Sbjct: 68 AEDAMD 73
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 111 (44.1 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 192 PDVDECT-IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
PDV+ T + V+ L D + VF KYG+V V +P+ + T + +GFAFV F K +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 251 AAKALE 256
A A++
Sbjct: 68 AEDAMD 73
>UNIPROTKB|E9PFS2 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC018737 HGNC:HGNC:17838 IPI:IPI00908705
ProteinModelPortal:E9PFS2 SMR:E9PFS2 Ensembl:ENST00000409201
ArrayExpress:E9PFS2 Bgee:E9PFS2 Uniprot:E9PFS2
Length = 199
Score = 124 (48.7 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 32/102 (31%), Positives = 54/102 (52%)
Query: 160 PDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPD-VDECTIYVEKLPPEAEHDYIESVFS 218
P + +L + +E ++ +VR+ + + K + + +YV LP + I S FS
Sbjct: 7 PAGPILSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFS 66
Query: 219 KYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLN 260
++G VT L + K TG KG+AFVEF + E+ AK + +N
Sbjct: 67 QFGTVTRFRLSRSKRTGNSKGYAFVEFES-EDVAKIVAETMN 107
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 136 (52.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 44/177 (24%), Positives = 87/177 (49%)
Query: 83 EASDNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPEI 142
+ASD+ D +L K G +++ +++M+L + ++ N K+ + L + I
Sbjct: 195 DASDDEYNDFKELSNKHGENEDEEEE--EEMMSLGDLPTNEENKDKNES-GENLAANENI 251
Query: 143 EVSVFLKCNKLARLTHD---PDDVVKALRKSKLLEVTEDG-TKVRRTVVVQDKPDVDEC- 197
+LK ++ R+ + P+ V + +++ EVT+ + T Q ++E
Sbjct: 252 SDLEWLK-SRSTRIKENGEVPEIVPEVKEVNEVTEVTQQSDNEPELTPEEQIAQKIEETG 310
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
+++ + EA + S+FS+YG + V + TGK KGF +V+F KE+A +A
Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRA 367
>GENEDB_PFALCIPARUM|MAL8P1.83 [details] [associations]
symbol:MAL8P1.83 "eukaryotictranslation
initiation factor, putative" species:5833 "Plasmodium falciparum"
[GO:0006412 "translation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743 HSSP:P19339
KO:K03248 PANTHER:PTHR10352 HOGENOM:HOG000239560 EMBL:AL844507
RefSeq:XP_001349368.1 ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3
MINT:MINT-1709542 EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434
KEGG:pfa:MAL8P1.83 EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR
ProtClustDB:CLSZ2435783 Uniprot:Q8IAZ3
Length = 266
Score = 127 (49.8 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 57/221 (25%), Positives = 97/221 (43%)
Query: 43 DPDDVVKALRKSKLLEVTEDG----TKVKGNIIRHFLVPISMETEASDNVDKDLSD-LQR 97
D DD ++A +K E+G TK N+ + + E ++K++++ L
Sbjct: 32 DADDDLEANKKLSYFTNYENGIKVVTKYSENLKKQTVTKKIQEVVIKKKLNKEINNRLNL 91
Query: 98 KDGG-GRHRKKQLYQ-QIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLAR 155
K+ H + ++N+ + + KD + L E + + LK N+
Sbjct: 92 KNFNIDIHSSVTVEPTDVVNIEVPKNNPLDFLKDTEYDYLFAEQTN-KTAKDLK-NRFKI 149
Query: 156 LTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIES 215
L + + VKA SK E G R Q+K ECT+ V L + + + +
Sbjct: 150 LKDEETEDVKAEDPSKAAGRRE-GLYYRPHDT-QNK----ECTVRVTNLSEDVNENELSN 203
Query: 216 VFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+F K G + + L K K T KGFAF+ +S +EEA +A+E
Sbjct: 204 LFGKVGNIVRMFLAKHKETQNSKGFAFITYSKREEAKRAIE 244
>UNIPROTKB|Q8IAZ3 [details] [associations]
symbol:MAL8P1.83 "Eukaryotic translation initiation factor
3 subunit G" species:36329 "Plasmodium falciparum 3D7" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 HSSP:P19339 KO:K03248 PANTHER:PTHR10352
HOGENOM:HOG000239560 EMBL:AL844507 RefSeq:XP_001349368.1
ProteinModelPortal:Q8IAZ3 IntAct:Q8IAZ3 MINT:MINT-1709542
EnsemblProtists:MAL8P1.83:mRNA GeneID:2655434 KEGG:pfa:MAL8P1.83
EuPathDB:PlasmoDB:PF3D7_0815600 OMA:WAKPSNR ProtClustDB:CLSZ2435783
Uniprot:Q8IAZ3
Length = 266
Score = 127 (49.8 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 57/221 (25%), Positives = 97/221 (43%)
Query: 43 DPDDVVKALRKSKLLEVTEDG----TKVKGNIIRHFLVPISMETEASDNVDKDLSD-LQR 97
D DD ++A +K E+G TK N+ + + E ++K++++ L
Sbjct: 32 DADDDLEANKKLSYFTNYENGIKVVTKYSENLKKQTVTKKIQEVVIKKKLNKEINNRLNL 91
Query: 98 KDGG-GRHRKKQLYQ-QIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLAR 155
K+ H + ++N+ + + KD + L E + + LK N+
Sbjct: 92 KNFNIDIHSSVTVEPTDVVNIEVPKNNPLDFLKDTEYDYLFAEQTN-KTAKDLK-NRFKI 149
Query: 156 LTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIES 215
L + + VKA SK E G R Q+K ECT+ V L + + + +
Sbjct: 150 LKDEETEDVKAEDPSKAAGRRE-GLYYRPHDT-QNK----ECTVRVTNLSEDVNENELSN 203
Query: 216 VFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+F K G + + L K K T KGFAF+ +S +EEA +A+E
Sbjct: 204 LFGKVGNIVRMFLAKHKETQNSKGFAFITYSKREEAKRAIE 244
>UNIPROTKB|J9NXM6 [details] [associations]
symbol:MKI67IP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 KO:K14838 InterPro:IPR021043
Pfam:PF12196 EMBL:AAEX03011863 RefSeq:XP_003639749.1
ProteinModelPortal:J9NXM6 Ensembl:ENSCAFT00000044914
GeneID:100856252 KEGG:cfa:100856252 Uniprot:J9NXM6
Length = 297
Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 38/105 (36%), Positives = 55/105 (52%)
Query: 156 LTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIES 215
L+ +P + K RK EVT+ RR ++K + IYV LPP I +
Sbjct: 12 LSLNPQEEAK-FRK----EVTQ---ACRRAAQQKEKEKLTPGVIYVGHLPPALYETQIRA 63
Query: 216 VFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLN 260
FS++G VT L + K TG KG+AFVEF++ E+ AK + +N
Sbjct: 64 YFSQFGTVTRFRLSRSKRTGNSKGYAFVEFAS-EDVAKIVADTMN 107
>UNIPROTKB|E2RHG8 [details] [associations]
symbol:MKI67IP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 OMA:QVRKRIT InterPro:IPR021043
Pfam:PF12196 EMBL:AAEX03011863 Ensembl:ENSCAFT00000007586
Uniprot:E2RHG8
Length = 299
Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 38/105 (36%), Positives = 55/105 (52%)
Query: 156 LTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIES 215
L+ +P + K RK EVT+ RR ++K + IYV LPP I +
Sbjct: 12 LSLNPQEEAK-FRK----EVTQ---ACRRAAQQKEKEKLTPGVIYVGHLPPALYETQIRA 63
Query: 216 VFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLN 260
FS++G VT L + K TG KG+AFVEF++ E+ AK + +N
Sbjct: 64 YFSQFGTVTRFRLSRSKRTGNSKGYAFVEFAS-EDVAKIVADTMN 107
>DICTYBASE|DDB_G0276725 [details] [associations]
symbol:DDB_G0276725 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0276725 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000019 eggNOG:COG0724
RefSeq:XP_643007.1 ProteinModelPortal:Q550X7
EnsemblProtists:DDB0202911 GeneID:8620667 KEGG:ddi:DDB_G0276725
InParanoid:Q550X7 Uniprot:Q550X7
Length = 78
Score = 107 (42.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
+IYV L + +++ FS YG++ + K K TG +G+A++E++ KE+A KA++
Sbjct: 5 SIYVGGLNSHISKEILKTKFSVYGEIQSLVFVKGKETGISEGYAYIEYNNKEDAVKAID- 63
Query: 258 GLNPCP 263
LN P
Sbjct: 64 DLNDQP 69
>POMBASE|SPAC23A1.09 [details] [associations]
symbol:SPAC23A1.09 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=NAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC23A1.09
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045292 HOGENOM:HOG000183826
KO:K12876 HSSP:Q9Y5S9 PIR:T38229 RefSeq:NP_594439.1
ProteinModelPortal:O42847 SMR:O42847 STRING:O42847
EnsemblFungi:SPAC23A1.09.1 GeneID:2541998 KEGG:spo:SPAC23A1.09
eggNOG:NOG246776 OMA:ITETTEG OrthoDB:EOG4M9523 NextBio:20803079
Uniprot:O42847
Length = 121
Score = 107 (42.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 22/63 (34%), Positives = 39/63 (61%)
Query: 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAK 253
V+ I V + PEA + +E +F+ +G V + L + TG +KG+A +E++T E+A K
Sbjct: 7 VEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQK 66
Query: 254 ALE 256
A++
Sbjct: 67 AVD 69
>WB|WBGene00001230 [details] [associations]
symbol:eif-3.G species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00343 SMART:SM00360 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0000003
GO:GO:0003743 EMBL:Z50044 eggNOG:COG0724
GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOGENOM:HOG000239560 PIR:T21238 RefSeq:NP_495778.1
ProteinModelPortal:Q19706 SMR:Q19706 STRING:Q19706 PaxDb:Q19706
EnsemblMetazoa:F22B5.2.1 EnsemblMetazoa:F22B5.2.2
EnsemblMetazoa:F22B5.2.3 GeneID:174346 KEGG:cel:CELE_F22B5.2
CTD:174346 WormBase:F22B5.2 InParanoid:Q19706 OMA:TRTETAF
NextBio:883648 Uniprot:Q19706
Length = 256
Score = 124 (48.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 190 DKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 249
D+ DE T V LP E D + +F K G+V + + + K TG KGFAFV F +++
Sbjct: 169 DRNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRD 228
Query: 250 EAAKAL 255
+AA+A+
Sbjct: 229 DAARAI 234
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 113 (44.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAA 252
D D T+YV LP A + +FS++G V V L K K TGK +GF FVE ++ ++
Sbjct: 67 DEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMAS-DDLD 125
Query: 253 KALELGLN 260
KA+ LN
Sbjct: 126 KAIS-ALN 132
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 113 (44.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 28/68 (41%), Positives = 39/68 (57%)
Query: 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAA 252
D D T+YV LP A + +FS++G V V L K K TGK +GF FVE ++ ++
Sbjct: 67 DEDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMAS-DDLD 125
Query: 253 KALELGLN 260
KA+ LN
Sbjct: 126 KAIS-ALN 132
>UNIPROTKB|Q9BYG3 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006461 "protein complex assembly" evidence=NAS] [GO:0009303
"rRNA transcription" evidence=NAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016072 "rRNA metabolic process" evidence=NAS]
[GO:0010923 "negative regulation of phosphatase activity"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AB044971 GO:GO:0005737
GO:GO:0005654 GO:GO:0005730 GO:GO:0006461 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471103 GO:GO:0000794
GO:GO:0009303 GO:GO:0010923 GO:GO:0016072 PDB:2AFF PDBsum:2AFF
CTD:84365 eggNOG:NOG244773 HOGENOM:HOG000242795 HOVERGEN:HBG057796
KO:K14838 OMA:QVRKRIT OrthoDB:EOG4MKNGX InterPro:IPR021043
Pfam:PF12196 EMBL:AK291903 EMBL:AC018737 EMBL:BC012457
EMBL:BC022990 EMBL:BC024238 IPI:IPI00154590 RefSeq:NP_115766.3
UniGene:Hs.367842 ProteinModelPortal:Q9BYG3 SMR:Q9BYG3
DIP:DIP-28134N IntAct:Q9BYG3 MINT:MINT-1031770 STRING:Q9BYG3
PhosphoSite:Q9BYG3 DMDM:71151919 SWISS-2DPAGE:Q9BYG3 PaxDb:Q9BYG3
PeptideAtlas:Q9BYG3 PRIDE:Q9BYG3 DNASU:84365
Ensembl:ENST00000285814 GeneID:84365 KEGG:hsa:84365 UCSC:uc002tnk.3
GeneCards:GC02M122484 HGNC:HGNC:17838 HPA:CAB015382 MIM:611970
neXtProt:NX_Q9BYG3 PharmGKB:PA38470 InParanoid:Q9BYG3
PhylomeDB:Q9BYG3 EvolutionaryTrace:Q9BYG3 GenomeRNAi:84365
NextBio:74141 ArrayExpress:Q9BYG3 Bgee:Q9BYG3 CleanEx:HS_MKI67IP
Genevestigator:Q9BYG3 GermOnline:ENSG00000155438 Uniprot:Q9BYG3
Length = 293
Score = 124 (48.7 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 32/102 (31%), Positives = 54/102 (52%)
Query: 160 PDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPD-VDECTIYVEKLPPEAEHDYIESVFS 218
P + +L + +E ++ +VR+ + + K + + +YV LP + I S FS
Sbjct: 7 PAGPILSLNPQEDVEFQKEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFS 66
Query: 219 KYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLN 260
++G VT L + K TG KG+AFVEF + E+ AK + +N
Sbjct: 67 QFGTVTRFRLSRSKRTGNSKGYAFVEFES-EDVAKIVAETMN 107
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 126 (49.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 44/155 (28%), Positives = 71/155 (45%)
Query: 107 KQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKA 166
K+L+ + + + K R F + E E V+ K N + + V +A
Sbjct: 136 KRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVV-VDEKELHVGRA 194
Query: 167 LRKSKLLEVTED-GTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTY 225
RK+ TED K +++D +YV+ L ++ +E +FS++G +T
Sbjct: 195 QRKTNR---TEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITS 251
Query: 226 VSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLN 260
+ S G KG FVEFST EEA+KA+ L +N
Sbjct: 252 CKV-MVHSNGISKGVGFVEFSTSEEASKAM-LKMN 284
>GENEDB_PFALCIPARUM|PF14_0057 [details] [associations]
symbol:PF14_0057 "RNA binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 104 (41.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAK 253
V+ I + + EA DYI+ VF ++G++ + L + TG LKG+AF+E+ +A +
Sbjct: 20 VEGWIIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKR 79
Query: 254 ALE 256
A++
Sbjct: 80 AID 82
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 104 (41.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 189 QDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTK 248
Q K + ++V L PE + I+S F+ +GK++ + K +TGK KG+ FV F K
Sbjct: 50 QKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 109
Query: 249 EEAAKAL 255
+A A+
Sbjct: 110 LDAENAI 116
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 104 (41.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 29/99 (29%), Positives = 48/99 (48%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELG 258
+++ L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR-D 68
Query: 259 LNPCPPDYQSSILTTTSRLSFGITPLGFESGGWWFKSSH 297
+N D ++ + ++ SF L G+ K S+
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFENVYLSPRDDGYSTKDSY 107
>UNIPROTKB|Q8IM34 [details] [associations]
symbol:PF14_0057 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 104 (41.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 194 VDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAK 253
V+ I + + EA DYI+ VF ++G++ + L + TG LKG+AF+E+ +A +
Sbjct: 20 VEGWIIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKR 79
Query: 254 ALE 256
A++
Sbjct: 80 AID 82
>UNIPROTKB|F1RXX7 [details] [associations]
symbol:MKI67 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 OMA:QVRKRIT InterPro:IPR021043
Pfam:PF12196 EMBL:AEMK01028690 EMBL:CU655817
Ensembl:ENSSSCT00000017130 Uniprot:F1RXX7
Length = 294
Score = 123 (48.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 28/74 (37%), Positives = 39/74 (52%)
Query: 183 RRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAF 242
RR +K + IYV LPP I + FS++G VT + L + K TG KG+ F
Sbjct: 31 RRATKQPEKQKLTPGVIYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGF 90
Query: 243 VEFSTKEEAAKALE 256
VEF +++ A A E
Sbjct: 91 VEFESEDVARIAAE 104
>UNIPROTKB|Q3SZM1 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9913 "Bos taurus" [GO:0010923 "negative
regulation of phosphatase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000794
GO:GO:0010923 EMBL:BC102791 IPI:IPI00706135 RefSeq:NP_001029526.1
UniGene:Bt.53167 HSSP:Q9BYG3 ProteinModelPortal:Q3SZM1 SMR:Q3SZM1
STRING:Q3SZM1 Ensembl:ENSBTAT00000031564 GeneID:509598
KEGG:bta:509598 CTD:84365 eggNOG:NOG244773
GeneTree:ENSGT00390000011515 HOGENOM:HOG000242795
HOVERGEN:HBG057796 InParanoid:Q3SZM1 KO:K14838 OMA:QVRKRIT
OrthoDB:EOG4MKNGX NextBio:20869038 InterPro:IPR021043 Pfam:PF12196
Uniprot:Q3SZM1
Length = 296
Score = 123 (48.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 29/74 (39%), Positives = 38/74 (51%)
Query: 183 RRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAF 242
RR Q+K IYV LPP I + FS++G VT L + K TG KG+ F
Sbjct: 31 RRATKQQEKQKPTPGVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGF 90
Query: 243 VEFSTKEEAAKALE 256
VEF +++ A A E
Sbjct: 91 VEFESEDVAKIAAE 104
>DICTYBASE|DDB_G0288291 [details] [associations]
symbol:DDB_G0288291 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0288291 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000109 eggNOG:COG0724
RefSeq:XP_636795.1 ProteinModelPortal:Q54J52
EnsemblProtists:DDB0187876 GeneID:8626552 KEGG:ddi:DDB_G0288291
InParanoid:Q54J52 OMA:NMHESEI ProtClustDB:CLSZ2429905
Uniprot:Q54J52
Length = 123
Score = 103 (41.3 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+YV + + D + + F +G + V LP T KLKGF F++F E+AA AL+
Sbjct: 17 LYVGGISDDVTIDILRAAFIPFGNINDVILPMDHKTQKLKGFGFIDFELPEDAADALD 74
>UNIPROTKB|D6RF41 [details] [associations]
symbol:RBM46 "Probable RNA-binding protein 46" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:28401
EMBL:AC009567 IPI:IPI00965528 ProteinModelPortal:D6RF41 SMR:D6RF41
Ensembl:ENST00000512640 ArrayExpress:D6RF41 Bgee:D6RF41
Uniprot:D6RF41
Length = 133
Score = 103 (41.3 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
C ++V K+P + D + VF + GK+ L + +G+ +G+AFV ++TKEEA A+
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRL-MMEFSGENRGYAFVMYTTKEEAQLAIR 119
Query: 257 LGLN 260
+ LN
Sbjct: 120 I-LN 122
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 103 (41.3 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 191 KPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
K + + IYV L + D ++S F +YG++ L + TG+ KGFAF+ + T++
Sbjct: 12 KMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDA 71
Query: 251 AAKAL 255
A +A+
Sbjct: 72 AQEAV 76
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 103 (41.3 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 191 KPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
K + + IYV L + D ++S F +YG++ L + TG+ KGFAF+ + T++
Sbjct: 12 KMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDA 71
Query: 251 AAKAL 255
A +A+
Sbjct: 72 AQEAV 76
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 102 (41.0 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
+++ L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 65
>UNIPROTKB|J3KSW7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813
ProteinModelPortal:J3KSW7 Ensembl:ENST00000585096 Uniprot:J3KSW7
Length = 73
Score = 102 (41.0 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 26/71 (36%), Positives = 37/71 (52%)
Query: 187 VVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFS 246
V++ ++C IYV LPP+ IE VF KYG + + L K + G FAFVEF
Sbjct: 6 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGP--PFAFVEFE 62
Query: 247 TKEEAAKALEL 257
+A A+ +
Sbjct: 63 DPRDAEDAVHI 73
>UNIPROTKB|K7EP16 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 Gene3D:3.30.70.330
EMBL:AC020931 PANTHER:PTHR10352 HGNC:HGNC:3274
Ensembl:ENST00000593054 Uniprot:K7EP16
Length = 118
Score = 102 (41.0 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 202 EKLPPEAEHDY----IESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKAL 255
E + P D ++ +F +G ++ + L K K+TG+ KGFAF+ F +E+AA+A+
Sbjct: 38 ESMQPNRREDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 95
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 102 (41.0 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
+++ L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 67
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 102 (41.0 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
+++ L E +E+VF KYG++ V L K + T K +GFAFV F + +A A
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDA 67
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 102 (41.0 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
IYV LP + + FS++G + V + + TG+ KG+AFV + T ++A KAL+
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALD 103
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 102 (41.0 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
IYV LP + + FS++G + V + + TG+ KG+AFV + T ++A KAL+
Sbjct: 46 IYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALD 103
>WB|WBGene00020354 [details] [associations]
symbol:T08B6.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG238057
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 EMBL:FO081718
PIR:T15076 RefSeq:NP_500666.2 ProteinModelPortal:O44530 SMR:O44530
STRING:O44530 EnsemblMetazoa:T08B6.5 GeneID:177260
KEGG:cel:CELE_T08B6.5 UCSC:T08B6.5 CTD:177260 WormBase:T08B6.5
InParanoid:O44530 OMA:ELETHFK NextBio:896018 Uniprot:O44530
Length = 177
Score = 114 (45.2 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 33/103 (32%), Positives = 50/103 (48%)
Query: 155 RLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIE 214
R + +D V A + +LL+ +K +++ D ++YV + ++ IE
Sbjct: 5 RSNNSNEDFVTA-EEMELLKQALSASKKYMAPTAEEQEKTDARSVYVGNVDWKSTVSEIE 63
Query: 215 SVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
F+ GKV V++PK K TG K FAFVEF E AL L
Sbjct: 64 EHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLESVQLALVL 106
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 122 (48.0 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 33/116 (28%), Positives = 59/116 (50%)
Query: 162 DVVKALRKSKLLEVTEDGTKVR--RTVVVQDKP---DVDECTIYVEKLPPEAEHDYIESV 216
D + + ++V +G VR R V +P + + +YV LP D ++++
Sbjct: 172 DFTSEMDSQRAIKVL-NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTI 230
Query: 217 FSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILT 272
F KYG + ++ + K TG+ +G AFV ++ +EEA +A+ LN P+ S L+
Sbjct: 231 FGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAIS-ALNNVIPEGGSQPLS 285
>UNIPROTKB|K7ENA8 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC020931 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HGNC:HGNC:3274
Ensembl:ENST00000589454 Uniprot:K7ENA8
Length = 289
Score = 120 (47.3 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 178 DGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237
DG R + ++ D TI V L + ++ +F +G ++ + L K K+TG+
Sbjct: 212 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 271
Query: 238 KGFAFVEFSTKEEAAKAL 255
KGFAF+ F +E+AA+A+
Sbjct: 272 KGFAFISFHRREDAARAI 289
>TAIR|locus:2055951 [details] [associations]
symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
Uniprot:Q9SHZ5
Length = 382
Score = 122 (48.0 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 34/122 (27%), Positives = 61/122 (50%)
Query: 159 DPDDVVKALRKSKLLEV----TEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIE 214
D +++++ K +L+ + E G+K+ V D + I+V L + H+ ++
Sbjct: 121 DIKNLLESYSKEELINLIYKTAEKGSKLISAVFESADRDSSQRNIFVRGLGWDTTHENLK 180
Query: 215 SVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTT 274
+ F YG++T S+ K TG+ KGF FV F T++ A AL+ NP Y ++
Sbjct: 181 AAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALK---NPEKRMYNRTVSCLP 237
Query: 275 SR 276
+R
Sbjct: 238 AR 239
>ZFIN|ZDB-GENE-040426-1076 [details] [associations]
symbol:eif3g "eukaryotic translation initiation
factor 3, subunit G" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;ISS] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1076 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
HSSP:O75821 GeneTree:ENSGT00510000047802 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:AY648835 EMBL:BC049046 EMBL:BC153489 IPI:IPI00500209
RefSeq:NP_957293.1 UniGene:Dr.161 ProteinModelPortal:Q6DRC4
SMR:Q6DRC4 STRING:Q6DRC4 PRIDE:Q6DRC4 Ensembl:ENSDART00000018071
Ensembl:ENSDART00000127487 GeneID:393974 KEGG:dre:393974
InParanoid:Q7ZUH3 OMA:NSEFDAP NextBio:20814945 Bgee:Q6DRC4
Uniprot:Q6DRC4
Length = 293
Score = 120 (47.3 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 177 EDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGK 236
+ GT+ ++ + D D TI V L + ++ +F +G ++ + L K K+TG+
Sbjct: 193 DGGTRRGESMQPNRRAD-DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQ 251
Query: 237 LKGFAFVEFSTKEEAAKAL 255
KGFAF+ F +E+AA+A+
Sbjct: 252 SKGFAFISFHRREDAARAI 270
>UNIPROTKB|F2Z4J5 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9913 "Bos taurus" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 IPI:IPI00700187 UniGene:Bt.49351 OMA:NSEFDAP
EMBL:DAAA02019449 ProteinModelPortal:F2Z4J5 SMR:F2Z4J5 PRIDE:F2Z4J5
Ensembl:ENSBTAT00000003545 Uniprot:F2Z4J5
Length = 320
Score = 120 (47.3 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 178 DGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237
DG R + ++ D TI V L + ++ +F +G ++ + L K K+TG+
Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279
Query: 238 KGFAFVEFSTKEEAAKAL 255
KGFAF+ F +E+AA+A+
Sbjct: 280 KGFAFISFHRREDAARAI 297
>UNIPROTKB|Q3ZC12 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9913 "Bos taurus" [GO:0006413 "translational
initiation" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=ISS] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 GO:GO:0005852
KO:K03248 HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC102984 IPI:IPI00700187
RefSeq:NP_001073091.1 UniGene:Bt.49351 ProteinModelPortal:Q3ZC12
SMR:Q3ZC12 STRING:Q3ZC12 PRIDE:Q3ZC12 GeneID:615695 KEGG:bta:615695
CTD:8666 HOGENOM:HOG000239560 InParanoid:Q3ZC12 OrthoDB:EOG4Z0B62
NextBio:20899745 Uniprot:Q3ZC12
Length = 320
Score = 120 (47.3 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 178 DGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237
DG R + ++ D TI V L + ++ +F +G ++ + L K K+TG+
Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279
Query: 238 KGFAFVEFSTKEEAAKAL 255
KGFAF+ F +E+AA+A+
Sbjct: 280 KGFAFISFHRREDAARAI 297
>UNIPROTKB|E2RGG6 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9615 "Canis lupus familiaris" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 KO:K03248 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 CTD:8666 OMA:NSEFDAP
EMBL:AAEX03012427 RefSeq:XP_854113.1 ProteinModelPortal:E2RGG6
Ensembl:ENSCAFT00000028426 GeneID:612971 KEGG:cfa:612971
NextBio:20898427 Uniprot:E2RGG6
Length = 320
Score = 120 (47.3 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 178 DGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237
DG R + ++ D TI V L + ++ +F +G ++ + L K K+TG+
Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279
Query: 238 KGFAFVEFSTKEEAAKAL 255
KGFAF+ F +E+AA+A+
Sbjct: 280 KGFAFISFHRREDAARAI 297
>UNIPROTKB|O75821 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IC;IDA;TAS]
[GO:0003743 "translation initiation factor activity"
evidence=IC;IDA] [GO:0005852 "eukaryotic translation initiation
factor 3 complex" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=TAS] [GO:0006412
"translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0044267 "cellular protein metabolic process"
evidence=TAS] Reactome:REACT_71 Reactome:REACT_17015
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 GO:GO:0048471 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724
GO:GO:0005852 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850
Reactome:REACT_1762 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
OMA:NSEFDAP EMBL:U96074 EMBL:AF020833 EMBL:AF092453 EMBL:AF094850
EMBL:BT006889 EMBL:BC000733 EMBL:BC008469 IPI:IPI00290460
RefSeq:NP_003746.2 UniGene:Hs.529059 PDB:2CQ0 PDBsum:2CQ0
ProteinModelPortal:O75821 SMR:O75821 DIP:DIP-31115N IntAct:O75821
MINT:MINT-3001737 STRING:O75821 PhosphoSite:O75821 PaxDb:O75821
PeptideAtlas:O75821 PRIDE:O75821 DNASU:8666 Ensembl:ENST00000253108
GeneID:8666 KEGG:hsa:8666 UCSC:uc002mnd.3 GeneCards:GC19M010225
HGNC:HGNC:3274 HPA:HPA041997 MIM:603913 neXtProt:NX_O75821
PharmGKB:PA162384827 InParanoid:O75821 PhylomeDB:O75821
ChiTaRS:EIF3G EvolutionaryTrace:O75821 GenomeRNAi:8666
NextBio:32507 Bgee:O75821 CleanEx:HS_EIF3G Genevestigator:O75821
GermOnline:ENSG00000130811 Uniprot:O75821
Length = 320
Score = 120 (47.3 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 178 DGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237
DG R + ++ D TI V L + ++ +F +G ++ + L K K+TG+
Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279
Query: 238 KGFAFVEFSTKEEAAKAL 255
KGFAF+ F +E+AA+A+
Sbjct: 280 KGFAFISFHRREDAARAI 297
>MGI|MGI:1858258 [details] [associations]
symbol:Eif3g "eukaryotic translation initiation factor 3,
subunit G" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISO;IDA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=ISO;IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1858258 GO:GO:0005634 GO:GO:0048471
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
OMA:NSEFDAP ChiTaRS:EIF3G EMBL:U70733 EMBL:AF108214 EMBL:BC008511
IPI:IPI00622371 RefSeq:NP_058572.2 UniGene:Mm.427309
ProteinModelPortal:Q9Z1D1 SMR:Q9Z1D1 IntAct:Q9Z1D1
MINT:MINT-1572167 STRING:Q9Z1D1 PhosphoSite:Q9Z1D1
REPRODUCTION-2DPAGE:Q9Z1D1 PaxDb:Q9Z1D1 PRIDE:Q9Z1D1
Ensembl:ENSMUST00000004206 GeneID:53356 KEGG:mmu:53356
InParanoid:Q9Z1D1 NextBio:310169 Bgee:Q9Z1D1 Genevestigator:Q9Z1D1
GermOnline:ENSMUSG00000070319 Uniprot:Q9Z1D1
Length = 320
Score = 120 (47.3 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 178 DGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237
DG R + ++ D TI V L + ++ +F +G ++ + L K K+TG+
Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279
Query: 238 KGFAFVEFSTKEEAAKAL 255
KGFAF+ F +E+AA+A+
Sbjct: 280 KGFAFISFHRREDAARAI 297
>RGD|1307191 [details] [associations]
symbol:Eif3g "eukaryotic translation initiation factor 3,
subunit G" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISO;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005852 "eukaryotic translation
initiation factor 3 complex" evidence=IEA;ISO;ISS] [GO:0006413
"translational initiation" evidence=ISO;ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 RGD:1307191
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 EMBL:CH473993
GO:GO:0005852 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:BC086383 IPI:IPI00365487 RefSeq:NP_001013113.1
UniGene:Rn.107880 ProteinModelPortal:Q5RK09 SMR:Q5RK09
STRING:Q5RK09 PhosphoSite:Q5RK09 PRIDE:Q5RK09 GeneID:298700
KEGG:rno:298700 UCSC:RGD:1307191 InParanoid:Q5RK09 NextBio:644231
ArrayExpress:Q5RK09 Genevestigator:Q5RK09 Uniprot:Q5RK09
Length = 320
Score = 120 (47.3 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 178 DGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237
DG R + ++ D TI V L + ++ +F +G ++ + L K K+TG+
Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279
Query: 238 KGFAFVEFSTKEEAAKAL 255
KGFAF+ F +E+AA+A+
Sbjct: 280 KGFAFISFHRREDAARAI 297
>UNIPROTKB|Q5RK09 [details] [associations]
symbol:Eif3g "Eukaryotic translation initiation factor 3
subunit G" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 RGD:1307191
GO:GO:0005634 GO:GO:0048471 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0003743 eggNOG:COG0724 EMBL:CH473993
GO:GO:0005852 HSSP:O75821 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
HOVERGEN:HBG026850 CTD:8666 HOGENOM:HOG000239560 OrthoDB:EOG4Z0B62
EMBL:BC086383 IPI:IPI00365487 RefSeq:NP_001013113.1
UniGene:Rn.107880 ProteinModelPortal:Q5RK09 SMR:Q5RK09
STRING:Q5RK09 PhosphoSite:Q5RK09 PRIDE:Q5RK09 GeneID:298700
KEGG:rno:298700 UCSC:RGD:1307191 InParanoid:Q5RK09 NextBio:644231
ArrayExpress:Q5RK09 Genevestigator:Q5RK09 Uniprot:Q5RK09
Length = 320
Score = 120 (47.3 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 178 DGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237
DG R + ++ D TI V L + ++ +F +G ++ + L K K+TG+
Sbjct: 220 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 279
Query: 238 KGFAFVEFSTKEEAAKAL 255
KGFAF+ F +E+AA+A+
Sbjct: 280 KGFAFISFHRREDAARAI 297
>UNIPROTKB|F1PKV9 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:AAEX03016265 Ensembl:ENSCAFT00000027928 Uniprot:F1PKV9
Length = 428
Score = 122 (48.0 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 32/97 (32%), Positives = 51/97 (52%)
Query: 96 QRKDGGGRHRK--KQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESP--EIEVSVFLKCN 151
+R DG + ++L +++++ +EFY SD NL KD F + ++ + + V +
Sbjct: 13 ERDDGEQEWKPPDQELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFK 72
Query: 152 KLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188
K+ LT D AL+ S LE+ ED KVRRT V
Sbjct: 73 KVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPV 109
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 100 (40.3 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
DE ++V L + +E VFSKYG+++ V + K + T + +GF FV F ++A A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 255 LELGLN 260
+ + +N
Sbjct: 64 M-MAMN 68
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 100 (40.3 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
DE ++V L + +E VFSKYG+++ V + K + T + +GF FV F ++A A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 255 LELGLN 260
+ + +N
Sbjct: 64 M-MAMN 68
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 100 (40.3 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
DE ++V L + +E VFSKYG+++ V + K + T + +GF FV F ++A A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 255 LELGLN 260
+ + +N
Sbjct: 64 M-MAMN 68
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 100 (40.3 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
DE ++V L + +E VFSKYG+++ V + K + T + +GF FV F ++A A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 255 LELGLN 260
+ + +N
Sbjct: 64 M-MAMN 68
>UNIPROTKB|F1S3I3 [details] [associations]
symbol:EIF3G "Eukaryotic translation initiation factor 3
subunit G" species:9823 "Sus scrofa" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
GeneTree:ENSGT00510000047802 InterPro:IPR024675 PANTHER:PTHR10352
Pfam:PF12353 OMA:NSEFDAP EMBL:CU462940 Ensembl:ENSSSCT00000014925
Uniprot:F1S3I3
Length = 322
Score = 120 (47.3 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 178 DGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237
DG R + ++ D TI V L + ++ +F +G ++ + L K K+TG+
Sbjct: 222 DGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 281
Query: 238 KGFAFVEFSTKEEAAKAL 255
KGFAF+ F +E+AA+A+
Sbjct: 282 KGFAFISFHRREDAARAI 299
>UNIPROTKB|A4RHN3 [details] [associations]
symbol:TIF35 "Eukaryotic translation initiation factor 3
subunit G" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 EMBL:CM001232 eggNOG:COG0724 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
RefSeq:XP_003715298.1 ProteinModelPortal:A4RHN3 STRING:A4RHN3
GeneID:2682994 KEGG:mgr:MGG_07109 OrthoDB:EOG4QJVX7 Uniprot:A4RHN3
Length = 303
Score = 119 (46.9 bits), Expect = 0.00010, P = 0.00010
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
D T+ V + AE + +F ++G+VT V L K + TG KGFAF+ F+ +E+A KA
Sbjct: 221 DLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDAVKA 280
>TAIR|locus:2055956 [details] [associations]
symbol:UBA1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0017091 "AU-rich
element binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0048255
IPI:IPI00520548 RefSeq:NP_850021.1 UniGene:At.25483
ProteinModelPortal:F4IIL5 SMR:F4IIL5 EnsemblPlants:AT2G22090.2
GeneID:816744 KEGG:ath:AT2G22090 OMA:WETTRET Uniprot:F4IIL5
Length = 347
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 33/105 (31%), Positives = 57/105 (54%)
Query: 159 DPDDVVKALR---KSKLLEV----TEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHD 211
DP+++ + L+ K +L+++ + G+ + VV DV I+V LP E +
Sbjct: 59 DPEELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRE 118
Query: 212 YIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+ VF YG++ ++ K+TGK KGF FV F T++ A +AL+
Sbjct: 119 TLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
>UNIPROTKB|Q9BRS8 [details] [associations]
symbol:LARP6 "La-related protein 6" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
PROSITE:PS50102 GO:GO:0005634 GO:GO:0005794 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 EMBL:AF443828 EMBL:AF443829
EMBL:AK002058 EMBL:AL833876 EMBL:AC009269 EMBL:AC090868
EMBL:BC006082 EMBL:BC009446 EMBL:BC014018 EMBL:BC039153
IPI:IPI00377127 IPI:IPI00414661 RefSeq:NP_060827.2
RefSeq:NP_932062.1 UniGene:Hs.416755 HSSP:P05455
ProteinModelPortal:Q9BRS8 SMR:Q9BRS8 STRING:Q9BRS8
PhosphoSite:Q9BRS8 DMDM:74752287 PaxDb:Q9BRS8 PRIDE:Q9BRS8
Ensembl:ENST00000299213 Ensembl:ENST00000344870 GeneID:55323
KEGG:hsa:55323 UCSC:uc002ass.3 CTD:55323 GeneCards:GC15M071123
HGNC:HGNC:24012 HPA:HPA020338 MIM:611300 neXtProt:NX_Q9BRS8
PharmGKB:PA142671568 eggNOG:NOG239004 HOGENOM:HOG000010108
HOVERGEN:HBG070244 InParanoid:Q9BRS8 OMA:TSGGENE OrthoDB:EOG4NGGMP
ChiTaRS:LARP6 GenomeRNAi:55323 NextBio:59586 ArrayExpress:Q9BRS8
Bgee:Q9BRS8 CleanEx:HS_LARP6 Genevestigator:Q9BRS8 Uniprot:Q9BRS8
Length = 491
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 107 KQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESP--EIEVSVFLKCNKLARLTHDPDDVV 164
++L +++++ +EFY SD NL KD F + ++ + + V + K+ LT D
Sbjct: 90 EELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTA 149
Query: 165 KALRKSKLLEVTEDGTKVRRTVVV 188
AL+ S +LE+ ED KVRRT V
Sbjct: 150 HALKYSVVLELNEDHRKVRRTTPV 173
>MGI|MGI:1914807 [details] [associations]
symbol:Larp6 "La ribonucleoprotein domain family, member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 PROSITE:PS50102 MGI:MGI:1914807 GO:GO:0005634
GO:GO:0005794 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 HSSP:P05455 CTD:55323
eggNOG:NOG239004 HOGENOM:HOG000010108 HOVERGEN:HBG070244
OMA:TSGGENE OrthoDB:EOG4NGGMP EMBL:AK017372 EMBL:AK020966
EMBL:AK039614 EMBL:AK042616 EMBL:AK087521 EMBL:BC090615
IPI:IPI00309063 RefSeq:NP_080511.2 UniGene:Mm.44546
ProteinModelPortal:Q8BN59 SMR:Q8BN59 STRING:Q8BN59
PhosphoSite:Q8BN59 PaxDb:Q8BN59 PRIDE:Q8BN59
Ensembl:ENSMUST00000038407 GeneID:67557 KEGG:mmu:67557
UCSC:uc009pzh.1 GeneTree:ENSGT00510000048191 InParanoid:Q8BN59
NextBio:324917 Bgee:Q8BN59 CleanEx:MM_LARP6 Genevestigator:Q8BN59
Uniprot:Q8BN59
Length = 492
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 33/102 (32%), Positives = 53/102 (51%)
Query: 89 DKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESP--EIEVSV 146
+ D DL+ + R ++L +++++ +EFY SD NL KD F + ++ + + V +
Sbjct: 75 ENDREDLEPE---WRPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKL 131
Query: 147 FLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188
K+ LT D AL+ S LE+ ED KVRRT V
Sbjct: 132 LTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPV 173
>TAIR|locus:2173338 [details] [associations]
symbol:SC35 "ortholog of human splicing factor SC35"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016020
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AB008268 HSSP:P19339 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276233 KO:K12891 OMA:DHRRRTR EMBL:AY063890
EMBL:AY122917 EMBL:AY127004 EMBL:AY143851 IPI:IPI00549029
RefSeq:NP_201225.1 RefSeq:NP_851261.1 UniGene:At.23698
UniGene:At.49215 ProteinModelPortal:Q9FMG4 SMR:Q9FMG4 STRING:Q9FMG4
PaxDb:Q9FMG4 PRIDE:Q9FMG4 EnsemblPlants:AT5G64200.1
EnsemblPlants:AT5G64200.2 GeneID:836541 KEGG:ath:AT5G64200
TAIR:At5g64200 InParanoid:Q9FMG4 ProtClustDB:CLSN2914827
ArrayExpress:Q9FMG4 Genevestigator:Q9FMG4 Uniprot:Q9FMG4
Length = 303
Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
Identities = 26/66 (39%), Positives = 40/66 (60%)
Query: 192 PDV-DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
PD+ D ++ V + D + +F+KYGKV V +P+ + TG +GFAFV + K+E
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 251 AAKALE 256
A KA+E
Sbjct: 70 AHKAVE 75
>UNIPROTKB|Q641B2 [details] [associations]
symbol:eif3g-b "Eukaryotic translation initiation factor 3
subunit G-B" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 HOVERGEN:HBG026850 EMBL:BC082427
RefSeq:NP_001087888.1 UniGene:Xl.3547 ProteinModelPortal:Q641B2
SMR:Q641B2 PRIDE:Q641B2 GeneID:447749 KEGG:xla:447749
Xenbase:XB-GENE-6070476 Uniprot:Q641B2
Length = 308
Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 178 DGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237
DG R + ++ D TI V L + ++ +F +G ++ + L K K+TG+
Sbjct: 208 DGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 267
Query: 238 KGFAFVEFSTKEEAAKAL 255
KGFAF+ F +E+AA+A+
Sbjct: 268 KGFAFISFHRREDAARAI 285
>UNIPROTKB|Q6DJI8 [details] [associations]
symbol:eif3g-a "Eukaryotic translation initiation factor 3
subunit G-A" species:8355 "Xenopus laevis" [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017334 Pfam:PF00076
PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743 GO:GO:0005852
HSSP:O75821 KO:K03248 HAMAP:MF_03006 InterPro:IPR024675
PANTHER:PTHR10352 Pfam:PF12353 EMBL:BC075190 RefSeq:NP_001086477.1
UniGene:Xl.48772 ProteinModelPortal:Q6DJI8 SMR:Q6DJI8 GeneID:446311
KEGG:xla:446311 CTD:446311 Xenbase:XB-GENE-6251503
HOVERGEN:HBG026850 Uniprot:Q6DJI8
Length = 308
Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 178 DGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237
DG R + ++ D TI V L + ++ +F +G ++ + L K K+TG+
Sbjct: 208 DGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 267
Query: 238 KGFAFVEFSTKEEAAKAL 255
KGFAF+ F +E+AA+A+
Sbjct: 268 KGFAFISFHRREDAARAI 285
>UNIPROTKB|Q28CY2 [details] [associations]
symbol:eif3g "Eukaryotic translation initiation factor 3
subunit G" species:8364 "Xenopus (Silurana) tropicalis" [GO:0005852
"eukaryotic translation initiation factor 3 complex" evidence=ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003743
eggNOG:COG0724 GO:GO:0005852 GeneTree:ENSGT00510000047802 KO:K03248
HAMAP:MF_03006 InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
CTD:446311 HOVERGEN:HBG026850 HOGENOM:HOG000239560 EMBL:CR855811
EMBL:BC158150 RefSeq:NP_001016749.1 UniGene:Str.41964
ProteinModelPortal:Q28CY2 SMR:Q28CY2 STRING:Q28CY2
Ensembl:ENSXETT00000047701 GeneID:549503 KEGG:xtr:549503
Xenbase:XB-GENE-6070198 Bgee:Q28CY2 Uniprot:Q28CY2
Length = 310
Score = 118 (46.6 bits), Expect = 0.00014, P = 0.00014
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 178 DGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKL 237
DG R + ++ D TI V L + ++ +F +G ++ + L K K+TG+
Sbjct: 210 DGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 269
Query: 238 KGFAFVEFSTKEEAAKAL 255
KGFAF+ F +E+AA+A+
Sbjct: 270 KGFAFISFHRREDAARAI 287
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 98 (39.6 bits), Expect = 0.00015, P = 0.00015
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
++YV +P + + I + F+ G V V + + TG+ +GFAFVEFS + A +A+E
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVE 65
>UNIPROTKB|F1MBD0 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:DAAA02027971 IPI:IPI00826749 Ensembl:ENSBTAT00000005109
ArrayExpress:F1MBD0 Uniprot:F1MBD0
Length = 425
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 107 KQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESP--EIEVSVFLKCNKLARLTHDPDDVV 164
++L +++++ +EFY SD NL KD F + ++ + + V + K+ LT D
Sbjct: 23 EELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTA 82
Query: 165 KALRKSKLLEVTEDGTKVRRTVVV 188
AL+ S LE+ ED KVRRT V
Sbjct: 83 HALKYSVTLELNEDHRKVRRTTPV 106
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
IY++ + PE E + +F K+G++T +L + S GK +GF FV FST E A A+E
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSR-DSEGKSRGFGFVNFSTHESAQAAVE 281
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 33/98 (33%), Positives = 55/98 (56%)
Query: 165 KALR-KSKLLEVTEDGTKVRRTVVVQDKPDVDE-CTIYVEKLPPEAEHDYIESVFSKYGK 222
K LR KSK TE+ + + + D+ + + L + D +++VFS++G
Sbjct: 80 KKLRNKSKEKGKTENSESPEKELKPKKAKVADKKARLIIRNLSFKCSEDDLKTVFSQFGT 139
Query: 223 VTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLN 260
+ V++P+ K GK++GFAFV+F EA KAL+ G+N
Sbjct: 140 ILEVNIPR-KPDGKMRGFAFVQFKNLLEAGKALK-GMN 175
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 106 (42.4 bits), Expect = 0.00016, P = 0.00016
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
T+YV LP +A +++ +F+++G+V V L K K TGK +GF FV + + A A++
Sbjct: 65 TLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQ-AQTAID- 122
Query: 258 GLN 260
LN
Sbjct: 123 ALN 125
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 106 (42.4 bits), Expect = 0.00016, P = 0.00016
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
T+YV LP +A +++ +F+++G+V V L K K TGK +GF FV + + A A++
Sbjct: 65 TLYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQ-AQTAID- 122
Query: 258 GLN 260
LN
Sbjct: 123 ALN 125
>UNIPROTKB|E1BTK3 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
NextBio:20821039 Uniprot:E1BTK3
Length = 216
Score = 114 (45.2 bits), Expect = 0.00016, P = 0.00016
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 251
T+YV LP ++ + +FSKYGKV V++ K K T K KG AF+ F KE A
Sbjct: 11 TVYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESA 64
>TAIR|locus:2051734 [details] [associations]
symbol:LARP6b "AT2G43970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
EMBL:AC004005 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 KO:K15191 UniGene:At.20914 EMBL:AF332565
EMBL:AF375410 EMBL:AF367277 EMBL:AY056238 EMBL:AY129474
IPI:IPI00531024 PIR:T00677 RefSeq:NP_566004.1 UniGene:At.20070
UniGene:At.74750 UniGene:At.74872 UniGene:At.74992
ProteinModelPortal:O80567 SMR:O80567 IntAct:O80567 PRIDE:O80567
EnsemblPlants:AT2G43970.1 GeneID:819002 KEGG:ath:AT2G43970
TAIR:At2g43970 HOGENOM:HOG000244026 InParanoid:O80567 OMA:HEEDDAT
PhylomeDB:O80567 ProtClustDB:CLSN2688918 ArrayExpress:O80567
Genevestigator:O80567 Uniprot:O80567
Length = 545
Score = 121 (47.7 bits), Expect = 0.00017, P = 0.00017
Identities = 32/117 (27%), Positives = 56/117 (47%)
Query: 111 QQIMNLMEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALR 168
Q+I+N +E+Y SD NL + + + PE + + V K+ + ++ + L+
Sbjct: 195 QKIVNQVEYYFSDLNLATTDHLMRFICKDPEGYVPIHVVASFKKIKAVINNNSQLAAVLQ 254
Query: 169 KSKLLEVTEDGTKVRRTVVVQDKP--DVDECTIYVEKLPPEAEHDYIESVFSKYGKV 223
S L V+EDG KVRR + + ++ I E LP + + + +FS G V
Sbjct: 255 NSAKLFVSEDGKKVRRISPITESAIEELQSRIIVAENLPEDHCYQNLMKIFSTVGSV 311
>DICTYBASE|DDB_G0286395 [details] [associations]
symbol:u2af2 "U2 snRNP auxiliary factor large
subunit" species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008187 "poly-pyrimidine tract binding"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0286395 GenomeReviews:CM000153_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000085 GO:GO:0000398
GO:GO:0005686 GO:GO:0008187 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_637725.1 ProteinModelPortal:Q54LV5
SMR:Q54LV5 EnsemblProtists:DDB0233353 GeneID:8625590
KEGG:ddi:DDB_G0286395 InParanoid:Q54LV5 OMA:DELMDND Uniprot:Q54LV5
Length = 671
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 43/137 (31%), Positives = 64/137 (46%)
Query: 167 LRKSKLLEVTEDGT----KVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGK 222
+R+ K + T D T + ++V + PD E IYV LP + ++S+ S YGK
Sbjct: 345 IRRPKDYQSTSDNTGGNASLLPSIVPTNVPD-SENKIYVGGLPSNLSEEQVKSLLSAYGK 403
Query: 223 VTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLNPCPPDYQSSILTTTSRLSFGIT 282
+ +L K +TG KGFAF E+ E A LN P ++ ++ R S G
Sbjct: 404 LKAFNLVKDTNTGVSKGFAFCEYQDSEVTDVACSK-LNGIPLADKTLVV---QRASIGSK 459
Query: 283 PLGFES-GGWWFKSSHE 298
P G S GG + H+
Sbjct: 460 PPGDASKGGDVTQQQHQ 476
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 112 (44.5 bits), Expect = 0.00018, P = 0.00018
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 189 QDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTK 248
+++ D D +IYV + A D +E F+ G V V++P + TG KGFA++EFS +
Sbjct: 58 EERIDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKGFAYIEFSDR 117
Query: 249 EEAAKALEL 257
E A+ L
Sbjct: 118 ESVRTAMAL 126
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 190 DKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 249
D P T+++ L A+ D I +F+K+G+V V +P T + KGF +V+FS E
Sbjct: 260 DTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNME 319
Query: 250 EAAKALE 256
+A KAL+
Sbjct: 320 DAKKALD 326
>UNIPROTKB|F1SIT3 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR002344 InterPro:IPR012677
PRINTS:PR00302 GO:GO:0005634 GO:GO:0005794 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642
Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 CTD:55323 OMA:TSGGENE GeneTree:ENSGT00510000048191
EMBL:CU074280 EMBL:CU302364 RefSeq:XP_003121812.3
Ensembl:ENSSSCT00000005486 GeneID:100522415 KEGG:ssc:100522415
Uniprot:F1SIT3
Length = 492
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 107 KQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESP--EIEVSVFLKCNKLARLTHDPDDVV 164
++L +++++ +EFY SD NL KD F + ++ + + V + K+ LT D
Sbjct: 90 EELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTA 149
Query: 165 KALRKSKLLEVTEDGTKVRRTVVV 188
AL+ S LE+ ED KVRRT V
Sbjct: 150 HALKYSVTLELNEDHRKVRRTTPV 173
>RGD|1308414 [details] [associations]
symbol:Larp6 "La ribonucleoprotein domain family, member 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR002344
InterPro:IPR012677 PRINTS:PR00302 RGD:1308414 GO:GO:0005634
GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396 GO:GO:0030529
EMBL:CH473975 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 CTD:55323 OMA:TSGGENE
OrthoDB:EOG4NGGMP GeneTree:ENSGT00510000048191 IPI:IPI00370054
RefSeq:NP_001101624.1 UniGene:Rn.33750 Ensembl:ENSRNOT00000017147
GeneID:315731 KEGG:rno:315731 UCSC:RGD:1308414 NextBio:669749
Uniprot:D3ZCR5
Length = 492
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 107 KQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESP--EIEVSVFLKCNKLARLTHDPDDVV 164
++L +++++ +EFY SD NL KD F + ++ + + V + K+ LT D
Sbjct: 90 EELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTA 149
Query: 165 KALRKSKLLEVTEDGTKVRRTVVV 188
AL+ S LE+ ED KVRRT V
Sbjct: 150 HALKYSVTLELNEDHRKVRRTTPV 173
>UNIPROTKB|G4MUH3 [details] [associations]
symbol:MGG_07252 "Polyadenylate-binding protein 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K14396 RefSeq:XP_003715472.1
ProteinModelPortal:G4MUH3 SMR:G4MUH3 EnsemblFungi:MGG_07252T0
GeneID:2682998 KEGG:mgr:MGG_07252 Uniprot:G4MUH3
Length = 193
Score = 111 (44.1 bits), Expect = 0.00024, P = 0.00024
Identities = 31/107 (28%), Positives = 57/107 (53%)
Query: 161 DDVVKALRKSKLLEVTEDGTKVR----------RTVVVQDKPDVDECTIYVEKLPPEAEH 210
D+ + A++K ++ E+ E+ K+R + + + + DVD +I+V + A
Sbjct: 28 DEEISAMKK-RVAEMEEEAAKLREMQASLDSQSQELSTESRDDVDSRSIFVGNVDYSASP 86
Query: 211 DYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
+ I++ F G + V++ K TG+ KGFA+VEF+ A+AL L
Sbjct: 87 EEIQAHFQSCGSINRVTILLDKFTGQPKGFAYVEFTEPSLVAQALVL 133
>ZFIN|ZDB-GENE-030131-6403 [details] [associations]
symbol:larp6 "La ribonucleoprotein domain family,
member 6" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0001756 "somitogenesis" evidence=IMP]
InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
ZFIN:ZDB-GENE-030131-6403 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0001756 GO:GO:0030529
InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630 PROSITE:PS50961
Pfam:PF05383 SMART:SM00715 CTD:55323 HOGENOM:HOG000010108
HOVERGEN:HBG070244 OMA:TSGGENE EMBL:BC056595 IPI:IPI00487082
RefSeq:NP_956197.1 UniGene:Dr.6975 ProteinModelPortal:Q6PHD4
GeneID:334471 KEGG:dre:334471 InParanoid:Q6PHD4 NextBio:20810417
ArrayExpress:Q6PHD4 Uniprot:Q6PHD4
Length = 485
Score = 119 (46.9 bits), Expect = 0.00024, P = 0.00024
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 108 QLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVK 165
+L Q+++ +E+YLSD NL D F + ++ + + V + K+ LT D
Sbjct: 77 ELIQKLVAQIEYYLSDENLEHDAFLLKHVRRNKLGFVSVKLLTSFKKVKHLTRDWRTTAY 136
Query: 166 ALRKSKLLEVTEDGTKVRRTVVV 188
ALR S LLE+ ++G KVRR V
Sbjct: 137 ALRHSNLLELNDEGRKVRRRSTV 159
>UNIPROTKB|F1NDG5 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:AADN02030982 IPI:IPI00680068
Ensembl:ENSGALT00000033037 ArrayExpress:F1NDG5 Uniprot:F1NDG5
Length = 56
Score = 96 (38.9 bits), Expect = 0.00025, P = 0.00025
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTK 248
D ++V L PE + I+S F+ +GK++ + K +TGK KG+ FV F K
Sbjct: 2 DHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 55
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 96 (38.9 bits), Expect = 0.00025, P = 0.00025
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
++YV P + D + + FS+ G V+ V + + TG+ +GFAFVEF+ + A +A++
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 96 (38.9 bits), Expect = 0.00025, P = 0.00025
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
++YV P + D + + FS+ G V+ V + + TG+ +GFAFVEF+ + A +A++
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 121 (47.7 bits), Expect = 0.00026, P = 0.00026
Identities = 34/96 (35%), Positives = 53/96 (55%)
Query: 165 KALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVT 224
K RK++ E + K ++ V DK + + + L + D +++VF+ YG V
Sbjct: 87 KETRKNENAESPKKEPKHKKAKVA-DK----KARLIIRNLSFKCSEDDLKAVFTHYGTVL 141
Query: 225 YVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLN 260
V++PK K GK++GFAFV+F EA KAL+ G N
Sbjct: 142 EVNIPK-KPDGKMRGFAFVQFKNLLEAGKALK-GAN 175
>UNIPROTKB|E2QV85 [details] [associations]
symbol:RBM8A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 GO:GO:0071013
GO:GO:0035145 ProteinModelPortal:E2QV85 Ensembl:ENSCAFT00000017835
Uniprot:E2QV85
Length = 177
Score = 109 (43.4 bits), Expect = 0.00027, P = 0.00027
Identities = 36/116 (31%), Positives = 60/116 (51%)
Query: 159 DPDDVVKALRKSKLLEV----TEDGTKVRRTV----VVQD--KP----DVDECTIYVEKL 204
DP+ + K K+K + +E+G++ R V QD +P V+ ++V +
Sbjct: 24 DPESIHKLKEKAKKRKGRGFGSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGV 83
Query: 205 PPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLN 260
EA + I F++YG++ + L + TG LKG+ VE+ T +EA A+E GLN
Sbjct: 84 HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAME-GLN 138
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 107 (42.7 bits), Expect = 0.00028, P = 0.00028
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
DE ++V L + + +E+VFSKYG++ V + K + T + +GF FV F E+A A
Sbjct: 4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63
Query: 255 LELGLN 260
+ G+N
Sbjct: 64 MA-GMN 68
>UNIPROTKB|J9NZ20 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AAEX03015129
RefSeq:XP_534835.1 ProteinModelPortal:J9NZ20
Ensembl:ENSCAFT00000049381 GeneID:477640 KEGG:cfa:477640
Uniprot:J9NZ20
Length = 217
Score = 112 (44.5 bits), Expect = 0.00029, P = 0.00029
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 251
T+YV LP ++ + +FSKYGKV V++ K K T K KG AF+ F K+ A
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
>UNIPROTKB|Q8TBF4 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
Length = 217
Score = 112 (44.5 bits), Expect = 0.00029, P = 0.00029
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 251
T+YV LP ++ + +FSKYGKV V++ K K T K KG AF+ F K+ A
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
>MGI|MGI:1914447 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
Length = 217
Score = 112 (44.5 bits), Expect = 0.00029, P = 0.00029
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 251
T+YV LP ++ + +FSKYGKV V++ K K T K KG AF+ F K+ A
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
>RGD|1309851 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
Length = 217
Score = 112 (44.5 bits), Expect = 0.00029, P = 0.00029
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 251
T+YV LP ++ + +FSKYGKV V++ K K T K KG AF+ F K+ A
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 64
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 111 (44.1 bits), Expect = 0.00033, P = 0.00033
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 192 PDVDECT-IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
PDV+ T + V+ L D + VF KYG+V V +P+ + T + +GFAFV F K +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 251 AAKALE 256
A A++
Sbjct: 68 AEDAMD 73
>UNIPROTKB|Q28ZX3 [details] [associations]
symbol:Pabp2 "Polyadenylate-binding protein 2"
species:46245 "Drosophila pseudoobscura pseudoobscura" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0042802 "identical protein binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0042802 EMBL:CM000071 GenomeReviews:CM000071_GR
eggNOG:NOG238057 GO:GO:0008143 KO:K14396 OMA:GRANYYA
OrthoDB:EOG4V9S6S RefSeq:XP_001360914.1 ProteinModelPortal:Q28ZX3
SMR:Q28ZX3 GeneID:4804339 KEGG:dpo:Dpse_GA15278 FlyBase:FBgn0075302
InParanoid:Q28ZX3 Uniprot:Q28ZX3
Length = 225
Score = 96 (38.9 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 188 VQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFST 247
+++K ++D ++YV + A + +E+ F G + V++ K+ G KGFA++EF +
Sbjct: 87 LEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGS 146
Query: 248 KEEAAKALEL 257
KE AL +
Sbjct: 147 KEFVETALAM 156
Score = 53 (23.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 13/61 (21%), Positives = 33/61 (54%)
Query: 7 DSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKV 66
D +L +D+ + + + E E + + + + DP+ ++A+ K+++ E+ E+ K+
Sbjct: 5 DISLNEDQLLESMEETNGEQETEIVTETEEEGSMQIDPE--LEAI-KARVKEMEEEAEKI 61
Query: 67 K 67
K
Sbjct: 62 K 62
>FB|FBgn0036018 [details] [associations]
symbol:CG3335 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0004386 eggNOG:COG0724 HSSP:Q61474 EMBL:AY113652
ProteinModelPortal:Q8MYR4 SMR:Q8MYR4 STRING:Q8MYR4 PaxDb:Q8MYR4
PRIDE:Q8MYR4 FlyBase:FBgn0036018 HOGENOM:HOG000132447
InParanoid:Q8MYR4 OrthoDB:EOG4M63ZP ArrayExpress:Q8MYR4 Bgee:Q8MYR4
Uniprot:Q8MYR4
Length = 918
Score = 121 (47.7 bits), Expect = 0.00034, P = 0.00034
Identities = 30/107 (28%), Positives = 59/107 (55%)
Query: 152 KLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHD 211
K +LTH + V+ R ++L+ T+D +R + Q K + I V +P +A++
Sbjct: 743 KNLQLTHIDGNPVELKRSDRVLK-TQDNDGAQRRLASQKKQTGTK--ILVRNIPFQAQYR 799
Query: 212 YIESVFSKYGKVTYVSLPKFKSTGK--LKGFAFVEFSTKEEAAKALE 256
+ +F +G++ + +PK +TG+ +GF FV++ +K EA +A +
Sbjct: 800 EVRDIFKAFGELRSLRIPKKATTGEDAHRGFGFVDYMSKAEAKRAFD 846
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 109 (43.4 bits), Expect = 0.00035, P = 0.00035
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
DE +++ L + +E FSKYG +T V + + + T + +GF FV F ++A A
Sbjct: 3 DEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDA 62
Query: 255 LELGLN 260
LE G+N
Sbjct: 63 LE-GMN 67
>DICTYBASE|DDB_G0275459 [details] [associations]
symbol:DDB_G0275459 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275459 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724 KO:K11294
RefSeq:XP_643642.1 ProteinModelPortal:Q75K16 STRING:Q75K16
PRIDE:Q75K16 EnsemblProtists:DDB0231494 GeneID:8620229
KEGG:ddi:DDB_G0275459 InParanoid:Q75K16 OMA:LRINGAN Uniprot:Q75K16
Length = 299
Score = 114 (45.2 bits), Expect = 0.00038, P = 0.00038
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
TI + + ++ FSK G ++ VSLP ++ +G+LKGFAFV F +++ KA+ L
Sbjct: 162 TIVCRNIAFTVDETLVKEFFSKCGSISRVSLPVYEDSGRLKGFAFVSFDSEDAVEKAIAL 221
>ZFIN|ZDB-GENE-030131-2420 [details] [associations]
symbol:srsf2b "serine/arginine-rich splicing
factor 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2420
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 OrthoDB:EOG4D26RH EMBL:CU463857 EMBL:BC065971
IPI:IPI00484778 UniGene:Dr.77943 SMR:Q6NZT9 STRING:Q6NZT9
Ensembl:ENSDART00000017706 Ensembl:ENSDART00000105586
InParanoid:Q6NZT9 OMA:YVEMESA Uniprot:Q6NZT9
Length = 220
Score = 111 (44.1 bits), Expect = 0.00039, P = 0.00039
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 192 PDVDECT-IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
PDVD T + V+ L + + VF KYG+V V +P+ + T + +GFAFV F K +
Sbjct: 8 PDVDGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 251 AAKALE 256
A A++
Sbjct: 68 AEDAMD 73
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 111 (44.1 bits), Expect = 0.00040, P = 0.00040
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 192 PDVDECT-IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
PDV+ T + V+ L D + VF KYG+V V +P+ + T + +GFAFV F K +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 251 AAKALE 256
A A++
Sbjct: 68 AEDAMD 73
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 111 (44.1 bits), Expect = 0.00040, P = 0.00040
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 192 PDVDECT-IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
PDV+ T + V+ L D + VF KYG+V V +P+ + T + +GFAFV F K +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 251 AAKALE 256
A A++
Sbjct: 68 AEDAMD 73
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 111 (44.1 bits), Expect = 0.00040, P = 0.00040
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 192 PDVDECT-IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
PDV+ T + V+ L D + VF KYG+V V +P+ + T + +GFAFV F K +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 251 AAKALE 256
A A++
Sbjct: 68 AEDAMD 73
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 111 (44.1 bits), Expect = 0.00040, P = 0.00040
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 192 PDVDECT-IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
PDV+ T + V+ L D + VF KYG+V V +P+ + T + +GFAFV F K +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 251 AAKALE 256
A A++
Sbjct: 68 AEDAMD 73
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 111 (44.1 bits), Expect = 0.00040, P = 0.00040
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 192 PDVDECT-IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
PDV+ T + V+ L D + VF KYG+V V +P+ + T + +GFAFV F K +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 251 AAKALE 256
A A++
Sbjct: 68 AEDAMD 73
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 111 (44.1 bits), Expect = 0.00040, P = 0.00040
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 192 PDVDECT-IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
PDV+ T + V+ L D + VF KYG+V V +P+ + T + +GFAFV F K +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 251 AAKALE 256
A A++
Sbjct: 68 AEDAMD 73
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 111 (44.1 bits), Expect = 0.00040, P = 0.00040
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 192 PDVDECT-IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
PDV+ T + V+ L D + VF KYG+V V +P+ + T + +GFAFV F K +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 251 AAKALE 256
A A++
Sbjct: 68 AEDAMD 73
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 111 (44.1 bits), Expect = 0.00040, P = 0.00040
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 192 PDVDECT-IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
PDV+ T + V+ L D + VF KYG+V V +P+ + T + +GFAFV F K +
Sbjct: 8 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRD 67
Query: 251 AAKALE 256
A A++
Sbjct: 68 AEDAMD 73
>UNIPROTKB|D4A5K7 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
NextBio:664628 Uniprot:D4A5K7
Length = 700
Score = 119 (46.9 bits), Expect = 0.00040, P = 0.00040
Identities = 33/96 (34%), Positives = 53/96 (55%)
Query: 165 KALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVT 224
K RK++ E + K ++ V DK + + + L + D ++SVF+ YG V
Sbjct: 87 KETRKNENSESPKKEPKHKKAKVA-DK----KARLIIRNLSFKCSEDDLKSVFTHYGTVL 141
Query: 225 YVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLN 260
V++P+ K GK++GFAF++F EA KAL+ G N
Sbjct: 142 EVNIPR-KPDGKMRGFAFIQFKNLLEAGKALK-GAN 175
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 94 (38.1 bits), Expect = 0.00041, P = 0.00041
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
++YV P + + + + FS G++ V + + TG+ +GFAF+EF+ + A +A+E
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVE 64
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 115 (45.5 bits), Expect = 0.00042, P = 0.00042
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 169 KSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSL 228
KS+ +T DG + + P C I+V L P+A+ + +F +G VT V +
Sbjct: 250 KSRFSPMTIDGMTSLAGINIPGHPGTGWC-IFVYNLAPDADESILWQMFGPFGAVTNVKV 308
Query: 229 PKFKSTGKLKGFAFVEFSTKEEAAKAL 255
+ +T K KGF FV + +EAA A+
Sbjct: 309 IRDFNTNKCKGFGFVTMTNYDEAAMAI 335
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 119 (46.9 bits), Expect = 0.00044, P = 0.00044
Identities = 33/96 (34%), Positives = 53/96 (55%)
Query: 165 KALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVT 224
K RK++ E + K ++ V DK + + + L + D ++SVF+ YG V
Sbjct: 87 KETRKNENSESPKKEPKHKKAKVA-DK----KARLIIRNLSFKCSEDDLKSVFTHYGTVL 141
Query: 225 YVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELGLN 260
V++P+ K GK++GFAF++F EA KAL+ G N
Sbjct: 142 EVNIPR-KPDGKMRGFAFIQFKNLLEAGKALK-GAN 175
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 115 (45.5 bits), Expect = 0.00044, P = 0.00044
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKAL 255
T++V +P + + +F+K+G + +++ K K T KG AF+ FSTKEEA AL
Sbjct: 19 TVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNAL 76
>ZFIN|ZDB-GENE-030131-5228 [details] [associations]
symbol:rnps1 "RNA binding protein S1, serine-rich
domain" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5228 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 GeneTree:ENSGT00700000104336 CTD:10921
eggNOG:NOG331533 HOGENOM:HOG000044325 KO:K14325 EMBL:BC057251
EMBL:BC065953 IPI:IPI00490683 RefSeq:NP_956055.1 UniGene:Dr.75879
ProteinModelPortal:Q6PG31 STRING:Q6PG31 Ensembl:ENSDART00000128731
GeneID:327020 KEGG:dre:327020 InParanoid:Q6PG31 NextBio:20809844
Bgee:Q6PG31 Uniprot:Q6PG31
Length = 283
Score = 113 (44.8 bits), Expect = 0.00044, P = 0.00044
Identities = 27/97 (27%), Positives = 53/97 (54%)
Query: 161 DDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKY 220
D+ ++ KSK + T++ + RR+ P +Y+ +L D+I+ +F+ Y
Sbjct: 107 DNRRRSRSKSKSQKRTDEKERKRRS------PSPKPTKLYLGRLTRNVTKDHIQEIFATY 160
Query: 221 GKVTYVSLPKFKSTGKL-KGFAFVEFSTKEEAAKALE 256
GK+ + +P + + KG+A+VE+ + E+A KAL+
Sbjct: 161 GKIKMIDMPSDRLHPNVSKGYAYVEYESPEDAQKALK 197
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 115 (45.5 bits), Expect = 0.00048, P = 0.00048
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 169 KSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSL 228
KS+ +T DG + + P C I+V L P+A+ + +F +G VT V +
Sbjct: 279 KSRFSPMTIDGMTSLAGINIPGHPGTGWC-IFVYNLAPDADESILWQMFGPFGAVTNVKV 337
Query: 229 PKFKSTGKLKGFAFVEFSTKEEAAKAL 255
+ +T K KGF FV + +EAA A+
Sbjct: 338 IRDFNTNKCKGFGFVTMTNYDEAAMAI 364
>TAIR|locus:2042366 [details] [associations]
symbol:AT2G44710 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 EMBL:AY091781 EMBL:BT000637
IPI:IPI00540100 RefSeq:NP_850422.1 UniGene:At.27807
ProteinModelPortal:Q8RWQ1 SMR:Q8RWQ1 IntAct:Q8RWQ1 STRING:Q8RWQ1
PRIDE:Q8RWQ1 EnsemblPlants:AT2G44710.1 GeneID:819079
KEGG:ath:AT2G44710 TAIR:At2g44710 InParanoid:Q8RWQ1 OMA:EGEGYEN
PhylomeDB:Q8RWQ1 ProtClustDB:CLSN2722610 Genevestigator:Q8RWQ1
Uniprot:Q8RWQ1
Length = 809
Score = 119 (46.9 bits), Expect = 0.00048, P = 0.00048
Identities = 50/190 (26%), Positives = 82/190 (43%)
Query: 73 HFLVPISMETEASDNVDKDLSD--LQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDR 130
H VP ETE ++VD D L D + ++ + E D L +
Sbjct: 87 HVDVPSKKETEVEESVDDFGKDERLDLDDNEPEYEAEEYGGEEFEERELGQEDHELVNEE 146
Query: 131 FFSQLLQESPEIEVSVFLKCNKLAR----LTHDPDDVVKALRKSKLLEVTEDGTKVRRTV 186
+ L+E E+E +++ L + DD A+ + K E T D +
Sbjct: 147 --GEELEEEIEVEEEAGEFADEIGDGAEDLDSEDDDDDHAIEEVKHGE-TVDVEEEEHHD 203
Query: 187 VVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFS 246
V+ ++ E I+V L A + ++ VF G+VT V + K T K KG AF+ F+
Sbjct: 204 VLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFA 263
Query: 247 TKEEAAKALE 256
T E+A +A++
Sbjct: 264 TVEQAKRAVK 273
>ASPGD|ASPL0000053752 [details] [associations]
symbol:AN1340 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 EMBL:AACD01000018
OrthoDB:EOG44N22T RefSeq:XP_658944.1 ProteinModelPortal:Q5BDP0
SMR:Q5BDP0 STRING:Q5BDP0 EnsemblFungi:CADANIAT00001272
GeneID:2877113 KEGG:ani:AN1340.2 OMA:SRACCYG Uniprot:Q5BDP0
Length = 187
Score = 108 (43.1 bits), Expect = 0.00048, P = 0.00048
Identities = 30/108 (27%), Positives = 60/108 (55%)
Query: 159 DPDDVVKALRKSKLLEVTEDGTKVRR---TV------VVQDKPDVDECTIYVEKLPPEAE 209
D ++ ++A+++ ++ E+ + K+R T+ + +DK D+D +I+V + A
Sbjct: 22 DDEEEIEAMKR-RVAEMESEAAKLREMQATLDQQSESLKEDKEDIDARSIFVGNVDYGAS 80
Query: 210 HDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
+ I++ F G + V++ K TG+ KG+A+VEF+ A+AL L
Sbjct: 81 PEEIQAHFQSCGSINRVTILLDKFTGQPKGYAYVEFAEPSLVAQALVL 128
>ZFIN|ZDB-GENE-041008-244 [details] [associations]
symbol:zgc:162969 "zgc:162969" species:7955 "Danio
rerio" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002344 PRINTS:PR00302 ZFIN:ZDB-GENE-041008-244
GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
GO:GO:0006396 GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
HOVERGEN:HBG070244 GeneTree:ENSGT00510000048191 EMBL:CU062501
IPI:IPI00500994 UniGene:Dr.75982 Ensembl:ENSDART00000004483
OMA:YEYLEGA Uniprot:A8B8W4
Length = 471
Score = 116 (45.9 bits), Expect = 0.00050, P = 0.00050
Identities = 35/82 (42%), Positives = 43/82 (52%)
Query: 111 QQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCN--KLARLTHDPDDVVKALR 168
QQI +E YLSD NL D F + +Q + VS+ L + K+ LT D + A R
Sbjct: 63 QQIATQLENYLSDENLSDDAFLLKHVQRNKMGYVSLKLLTSFKKIRDLTRDWRTTLAAAR 122
Query: 169 KSKLLEVTEDGTKVRRTVVVQD 190
S LEV E GTKVRR V D
Sbjct: 123 TSLQLEVNEMGTKVRRRTPVPD 144
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 115 (45.5 bits), Expect = 0.00050, P = 0.00050
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 169 KSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSL 228
KS+ +T DG + + P C I+V L P+A+ + +F +G VT V +
Sbjct: 290 KSRFSPMTIDGMTSLAGINIPGHPGTGWC-IFVYNLAPDADESILWQMFGPFGAVTNVKV 348
Query: 229 PKFKSTGKLKGFAFVEFSTKEEAAKAL 255
+ +T K KGF FV + +EAA A+
Sbjct: 349 IRDFNTNKCKGFGFVTMTNYDEAAMAI 375
>UNIPROTKB|H0YIB4 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich-splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL021546 HGNC:HGNC:10791 Ensembl:ENST00000550458
Uniprot:H0YIB4
Length = 110
Score = 93 (37.8 bits), Expect = 0.00053, P = 0.00053
Identities = 24/66 (36%), Positives = 33/66 (50%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALELG 258
IYV LP + +E +F KYG++ + L K+ L FAFV F +A A+ G
Sbjct: 4 IYVGNLPTDVREKDLEDLFYKYGRIREIEL---KNRHGLVPFAFVRFEDPRDAEDAI-YG 59
Query: 259 LNPCPP 264
N PP
Sbjct: 60 RNGLPP 65
>UNIPROTKB|J3QQV5 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471109
UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813
ProteinModelPortal:J3QQV5 Ensembl:ENST00000583741 Uniprot:J3QQV5
Length = 65
Score = 93 (37.8 bits), Expect = 0.00053, P = 0.00053
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 187 VVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEF 245
V++ ++C IYV LPP+ IE VF KYG + + L K + G FAFVEF
Sbjct: 6 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL-KNRRGGP--PFAFVEF 61
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 93 (37.8 bits), Expect = 0.00053, P = 0.00053
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
T+YV LP + + ++ + S++G+V + KSTG+ +G+ F+E ++E A+
Sbjct: 4 TLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIE--VRDEDAEKFMT 61
Query: 258 GLN 260
GLN
Sbjct: 62 GLN 64
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 93 (37.8 bits), Expect = 0.00053, P = 0.00053
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
T+YV LP + + ++ + S++G+V + KSTG+ +G+ F+E ++E A+
Sbjct: 4 TLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIE--VRDEDAEKFMT 61
Query: 258 GLN 260
GLN
Sbjct: 62 GLN 64
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 119 (46.9 bits), Expect = 0.00055, P = 0.00055
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 191 KPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
+P+ I ++ LP E+ I +F+ YG++ V +PK K G +GF FVEF T+EE
Sbjct: 789 QPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPK-KPNGGHRGFGFVEFLTEEE 847
Query: 251 AAKALE-LG 258
A A+E LG
Sbjct: 848 AKNAMEALG 856
>MGI|MGI:106330 [details] [associations]
symbol:Larp4b "La ribonucleoprotein domain family, member 4B"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0042788 "polysomal ribosome" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 PROSITE:PS50102 SMART:SM00360 MGI:MGI:106330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
HSSP:Q71RC2 CTD:23185 eggNOG:NOG327281 HOGENOM:HOG000004803
OMA:LITPQTW OrthoDB:EOG4FN4HK ChiTaRS:LARP4B EMBL:AK172916
EMBL:AK042491 EMBL:AK080953 EMBL:AK160759 EMBL:BC078640
IPI:IPI00469235 IPI:IPI00620564 IPI:IPI00831428 RefSeq:NP_766173.1
UniGene:Mm.234944 UniGene:Mm.392515 ProteinModelPortal:Q6A0A2
SMR:Q6A0A2 PhosphoSite:Q6A0A2 PaxDb:Q6A0A2 PRIDE:Q6A0A2
Ensembl:ENSMUST00000091829 GeneID:217980 KEGG:mmu:217980
UCSC:uc007pkr.1 UCSC:uc007pks.1 UCSC:uc011ywb.1
GeneTree:ENSGT00530000063417 InParanoid:Q6A0A2 NextBio:376122
Bgee:Q6A0A2 CleanEx:MM_LARP5 Genevestigator:Q6A0A2 Uniprot:Q6A0A2
Length = 741
Score = 118 (46.6 bits), Expect = 0.00056, P = 0.00056
Identities = 48/209 (22%), Positives = 90/209 (43%)
Query: 57 LEVTEDGTKVKGNIIRHFLVPISMETEASD--NVDKDLSDLQ----RKDGGGRHRKKQLY 110
L+ DG K + N +P + E E +D + D S+ + D GG + +
Sbjct: 100 LDANGDGDKSRENAA----LPDAQEAEQTDMSTLALDHSEYEPLPENNDTGGNESQPESQ 155
Query: 111 QQ----IMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKA 166
+ + +EF LS NL D + + + ++ + + +L+ D D +V+
Sbjct: 156 EDPREVLKKTLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEV 215
Query: 167 LRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYV 226
LR L++V E G KVR P+ + C + + ++ + +E++F G
Sbjct: 216 LRSLPLVQVDEKGEKVR--------PNQNRCIVILREISESTPVEEVEALFK--GD---- 261
Query: 227 SLPKFKSTG-KLKGFAFVEFSTKEEAAKA 254
+LPKF + F+ F T+ +A +A
Sbjct: 262 NLPKFINCEFAYNDNWFITFETEADAQQA 290
>UNIPROTKB|Q56JZ7 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
Length = 217
Score = 109 (43.4 bits), Expect = 0.00065, P = 0.00065
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 251
T+YV LP ++ + +FSKYGKV V++ K K T + KG AF+ F K+ A
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSA 64
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 92 (37.4 bits), Expect = 0.00069, P = 0.00069
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+YV + EA D + +FS G VT V + TG+ KG +V T+EEA +A+E
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 92 (37.4 bits), Expect = 0.00069, P = 0.00069
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+YV + EA D + +FS G VT V + TG+ KG +V T+EEA +A+E
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIE 62
>TAIR|locus:2119797 [details] [associations]
symbol:AT4G20030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT025729
EMBL:AK176834 IPI:IPI00538556 RefSeq:NP_567594.1 UniGene:At.26265
UniGene:At.71246 ProteinModelPortal:Q67XI5 SMR:Q67XI5 STRING:Q67XI5
EnsemblPlants:AT4G20030.1 GeneID:827748 KEGG:ath:AT4G20030
TAIR:At4g20030 HOGENOM:HOG000005780 InParanoid:Q67XI5 OMA:DEVADCW
PhylomeDB:Q67XI5 ProtClustDB:CLSN2689522 Genevestigator:Q67XI5
Uniprot:Q67XI5
Length = 152
Score = 102 (41.0 bits), Expect = 0.00071, P = 0.00071
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
I V LP D+++ FS +G++ V L K ++ + KG+AF++F+++++A A+E
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIE 99
>UNIPROTKB|F1NWE6 [details] [associations]
symbol:LARP6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus"
evidence=IEA] InterPro:IPR002344 InterPro:IPR012677 PRINTS:PR00302
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0006396
GO:GO:0030529 InterPro:IPR024642 Pfam:PF12901 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715 OMA:TSGGENE
GeneTree:ENSGT00510000048191 EMBL:AADN02040372 EMBL:AADN02040373
EMBL:AADN02040374 EMBL:AADN02040375 EMBL:AADN02040376
EMBL:AADN02040377 EMBL:AADN02040378 EMBL:AADN02040379
IPI:IPI00582301 Ensembl:ENSGALT00000006440 Uniprot:F1NWE6
Length = 444
Score = 114 (45.2 bits), Expect = 0.00077, P = 0.00076
Identities = 37/111 (33%), Positives = 54/111 (48%)
Query: 80 METEASDNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQES 139
M T S + D SD K + L Q+++ +E+Y SD NL KD F + ++ +
Sbjct: 23 MPTSISGGENDDDSDQNWKPP-----ENDLIQKLVAQIEYYFSDENLEKDAFLLKHVRRN 77
Query: 140 PEIEVSVFLKCN--KLARLTHDPDDVVKALRKSKLLEVTEDGTKVRRTVVV 188
VSV L + K+ LT D AL+ S +LE+ +D KVRR V
Sbjct: 78 KMGYVSVKLLTSFKKVKHLTRDWRTTTHALKYSDMLELNDDNRKVRRKTPV 128
>TAIR|locus:2058141 [details] [associations]
symbol:AT2G43370 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HSSP:Q9V535 HOGENOM:HOG000006374 KO:K13155
EMBL:AY072388 EMBL:AY114697 IPI:IPI00539495 RefSeq:NP_850395.1
UniGene:At.42685 ProteinModelPortal:Q8VY74 SMR:Q8VY74 IntAct:Q8VY74
STRING:Q8VY74 EnsemblPlants:AT2G43370.1 GeneID:818938
KEGG:ath:AT2G43370 TAIR:At2g43370 InParanoid:Q8VY74 OMA:RLVRHIV
PhylomeDB:Q8VY74 ProtClustDB:CLSN2680226 Genevestigator:Q8VY74
Uniprot:Q8VY74
Length = 333
Score = 112 (44.5 bits), Expect = 0.00080, P = 0.00080
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
CT++V +L D + V SKYG++ + L + TG +G+ FVE+ T++E +A E
Sbjct: 64 CTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYE 123
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 115 (45.5 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 189 QDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTK 248
Q P+ D T++V LP A D + VF G V + LP +G+ KGF +V++S+
Sbjct: 378 QTSPESD--TLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSV 435
Query: 249 EEAAKA 254
+EA KA
Sbjct: 436 DEARKA 441
Score = 40 (19.1 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 79 SMETEASDNVDKDLSD 94
S E+E+SD+ D D D
Sbjct: 158 SSESESSDSSDSDSDD 173
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 104 (41.7 bits), Expect = 0.00083, P = 0.00083
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
DE ++V L E + +E VFSKYG+V V + K + + + +GF FV F E+A A
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 255 LELGLN 260
+ + +N
Sbjct: 64 M-MAMN 68
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 112 (44.5 bits), Expect = 0.00085, P = 0.00085
Identities = 27/96 (28%), Positives = 47/96 (48%)
Query: 160 PDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSK 219
P + + ++ + +T DG + + P C I+V L P+A+ + +F
Sbjct: 227 PGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWC-IFVYNLAPDADESILWQMFGP 285
Query: 220 YGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKAL 255
+G VT V + + +T K KGF FV + +EAA A+
Sbjct: 286 FGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 321
>TAIR|locus:2164082 [details] [associations]
symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
Length = 100
Score = 91 (37.1 bits), Expect = 0.00088, P = 0.00088
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 192 PDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 251
P+ E IYV LP + + S F ++G++ Y + +T + KGF FV F E A
Sbjct: 4 PNDRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESA 63
Query: 252 AKALE 256
+A E
Sbjct: 64 TRACE 68
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.135 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 299 299 0.00095 115 3 11 22 0.42 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 172
No. of states in DFA: 593 (63 KB)
Total size of DFA: 187 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.99u 0.07s 28.06t Elapsed: 00:00:09
Total cpu time: 28.01u 0.07s 28.08t Elapsed: 00:00:09
Start: Thu Aug 15 10:59:32 2013 End: Thu Aug 15 10:59:41 2013
WARNINGS ISSUED: 1