RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3930
(299 letters)
>d2cqka1 a.4.5.46 (A:43-130) La-related protein 4 LARP4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 88.2 bits (219), Expect = 6e-23
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 107 KQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKA 166
+ L + + +EF S NL KD + + I + ++ +LT DPD +++
Sbjct: 5 EDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEV 64
Query: 167 LRKSKLLEVTEDGTKVRR 184
LR S +++V E G KVR
Sbjct: 65 LRSSPMVQVDEKGEKVRP 82
Score = 78.9 bits (195), Expect = 2e-19
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVT 60
+EF S NL KD + + I + ++ +LT DPD +++ LR S +++V
Sbjct: 15 LEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVD 74
Query: 61 EDGTKVK 67
E G KV+
Sbjct: 75 EKGEKVR 81
>d1s29a_ a.4.5.46 (A:) Lupus La autoantigen N-terminal domain
{Trypanosoma brucei [TaxId: 5691]}
Length = 92
Score = 84.8 bits (210), Expect = 1e-21
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 108 QLYQQIMNLMEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVK 165
+ Q++ +EFY SD N+++D F + E+ E + + L ++ +T D +VV+
Sbjct: 9 ENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVE 68
Query: 166 ALRKSKLLEVTEDGTKVRR 184
A+R S+ L ++EDG VRR
Sbjct: 69 AIRPSEKLVLSEDGLMVRR 87
Score = 77.5 bits (191), Expect = 8e-19
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQESPE--IEVSVFLKCNKLARLTHDPDDVVKALRKSKLLE 58
+EFY SD N+++D F + E+ E + + L ++ +T D +VV+A+R S+ L
Sbjct: 18 VEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLV 77
Query: 59 VTEDGTKVK 67
++EDG V+
Sbjct: 78 LSEDGLMVR 86
>d1zh5a1 a.4.5.46 (A:5-103) Lupus La autoantigen N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 99
Score = 84.5 bits (209), Expect = 2e-21
Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Query: 101 GGRHRKKQLYQQIMNLMEFYLSDSNLRKDRFFSQLLQES-PEIEVSVFLKCNKLARLTHD 159
G + L +I + +E+Y D NL +D+F + ++ + + + +K N+L RLT D
Sbjct: 1 GDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTD 60
Query: 160 PDDVVKALRKSK--LLEVTEDGTKVRRTVVVQDKPDVDE 196
+ +V+AL KSK L+E++ED TK+RR+ + P+V +
Sbjct: 61 FNVIVEALSKSKAELMEISEDKTKIRRS-PSKPLPEVTD 98
Score = 69.0 bits (169), Expect = 1e-15
Identities = 26/70 (37%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 1 MEFYLSDSNLRKDRFFSQLLQES-PEIEVSVFLKCNKLARLTHDPDDVVKALRKSK--LL 57
+E+Y D NL +D+F + ++ + + + +K N+L RLT D + +V+AL KSK L+
Sbjct: 17 IEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELM 76
Query: 58 EVTEDGTKVK 67
E++ED TK++
Sbjct: 77 EISEDKTKIR 86
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 60.7 bits (147), Expect = 8e-13
Identities = 20/64 (31%), Positives = 38/64 (59%)
Query: 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAA 252
+ + +YV LP D ++++F KYG + ++ + K TG+ +G AFV ++ +EEA
Sbjct: 3 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 62
Query: 253 KALE 256
+A+
Sbjct: 63 EAIS 66
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 58.8 bits (142), Expect = 4e-12
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
C +++ L + + + F ++G+V + + T + +GF FV F + K L
Sbjct: 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 60
Query: 257 L 257
Sbjct: 61 Q 61
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 57.6 bits (139), Expect = 2e-11
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPK-FKSTGKLKGFAFVEFSTKEEAAK 253
I V +P +A I +FS +G++ V LPK TG +GF FV+F TK++A K
Sbjct: 7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 66
Query: 254 ALELGLN 260
A +
Sbjct: 67 AFNALCH 73
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 54.9 bits (132), Expect = 8e-11
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
++YV L P+ + FS G + + + + T + G+A+V F +A +AL+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 60
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 52.3 bits (125), Expect = 9e-10
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
I+V L P+ + I F +G+V + LP T K +GF F+ F +E K +E
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 51.5 bits (123), Expect = 2e-09
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
CT+YV L + I +FSK G + + + K GF FVE+ ++ +A A+
Sbjct: 8 CTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMR 67
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 51.6 bits (123), Expect = 3e-09
Identities = 13/69 (18%), Positives = 33/69 (47%)
Query: 189 QDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTK 248
+ + +++ L E + + + + ++GK+T + + ++ + +GF FV FS+
Sbjct: 13 KKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSM 72
Query: 249 EEAAKALEL 257
E A+
Sbjct: 73 AEVDAAMAA 81
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 51.2 bits (122), Expect = 3e-09
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAA 252
+ + +YV LP +E +FS+YG++ + + TG +G F+ F + EA
Sbjct: 3 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 62
Query: 253 KALE 256
+A++
Sbjct: 63 EAIK 66
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 51.4 bits (123), Expect = 3e-09
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 189 QDKPDVDECTIYVEKLPPE-AEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFST 247
+ P +++ L + +E++FSKYGK+ S+ K GFAFV++
Sbjct: 8 KTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQYVN 59
Query: 248 KEEAAKALE 256
+ A A+
Sbjct: 60 ERNARAAVA 68
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 50.8 bits (121), Expect = 5e-09
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 180 TKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKG 239
+ VR V + D T++ +L +E FS GKV V + +++ + KG
Sbjct: 2 SPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKG 61
Query: 240 FAFVEFSTKEEAAKALEL 257
A+VEF + A+ L
Sbjct: 62 IAYVEFCEIQSVPLAIGL 79
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 49.6 bits (118), Expect = 1e-08
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
+++ L E + + S F ++G +T + + +T + +GF FV ++T EE A+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 49.6 bits (118), Expect = 1e-08
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 192 PDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 251
P +Y+ LP + + + +F KYG + + +T + +G A+V + +A
Sbjct: 3 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ---IRVGNTPETRGTAYVVYEDIFDA 59
Query: 252 AKALE 256
A +
Sbjct: 60 KNACD 64
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 49.0 bits (116), Expect = 2e-08
Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKS-----TGKLKGFAFVEFSTKEEAA 252
+YV +P + + F+ ++ ++ + K FAF+EF + +E
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 253 KALEL 257
+A+
Sbjct: 63 QAMAF 67
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 48.5 bits (115), Expect = 2e-08
Identities = 13/60 (21%), Positives = 31/60 (51%)
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+ V LP + + ++F G + + + TG G+AFV+F+++ ++ +A++
Sbjct: 3 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 50.4 bits (119), Expect = 3e-08
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
+++ L E + + S F ++G +T + + +T + +GF FV ++T EE A+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 258 GLNPCPPDYQ 267
+
Sbjct: 68 RPHKVDGRVV 77
Score = 47.7 bits (112), Expect = 3e-07
Identities = 22/100 (22%), Positives = 40/100 (40%)
Query: 158 HDPDDVVKALRKSKLLEVTEDGTKVRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVF 217
+ D + A V E V R + + I+V + + E ++ F
Sbjct: 59 EEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 118
Query: 218 SKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
+YGK+ + + + +GK +GFAFV F + K +
Sbjct: 119 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 158
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 48.1 bits (114), Expect = 3e-08
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVT---YVSLPKFKSTGKLKGFAFVEFSTKEEAAKAL 255
++++ L + ++ VFSK G + GF FVE+ E+A KAL
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 256 E 256
+
Sbjct: 61 K 61
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 47.7 bits (113), Expect = 4e-08
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
+++ L + ++ FSK+G+V +L TG+ +GF FV F E K ++
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 48.1 bits (114), Expect = 4e-08
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTY--VSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
C +++ +P + + I +K + + K +GFAFVE+ + AA A
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 255 LE 256
Sbjct: 62 RR 63
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 47.7 bits (113), Expect = 4e-08
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+++ LP D ++ + + +G + +L K +TG KG+AF E+ +A+
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 47.7 bits (113), Expect = 5e-08
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
+ T+YV L + + +F + G V +PK + TG+ +G+ FVEF ++E+A A
Sbjct: 8 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 67
Query: 255 LE 256
++
Sbjct: 68 IK 69
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.3 bits (112), Expect = 6e-08
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 190 DKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 249
++ D TI V L + ++ +F +G ++ + L K K+TG+ KGFAF+ F +E
Sbjct: 2 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRE 61
Query: 250 EAAKALE 256
+AA+A+
Sbjct: 62 DAARAIA 68
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 47.7 bits (113), Expect = 6e-08
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 188 VQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFST 247
V ++ CT+Y + + FS +G++ + + K ++FV FST
Sbjct: 10 VVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFST 63
Query: 248 KEEAAKALE 256
E AA A+
Sbjct: 64 HESAAHAIV 72
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.3 bits (112), Expect = 7e-08
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+ V LP + ++ FS +G+V V + K TG KGF FV F+ E K +
Sbjct: 10 DLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 68
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 46.6 bits (110), Expect = 1e-07
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 189 QDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTK 248
+ PD C + V L + VFSKYG + VS+ + + + +GFAFV F
Sbjct: 3 RANPD-PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 61
Query: 249 EEAAKALE 256
++A +A E
Sbjct: 62 DDAKEAKE 69
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 46.2 bits (109), Expect = 2e-07
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 187 VVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFS 246
V++ ++C IYV LPP+ IE VF KYG + + K+ FAFVEF
Sbjct: 5 VIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDI---DLKNRRGGPPFAFVEFE 61
Query: 247 TKEEAAKALE 256
+A A+
Sbjct: 62 DPRDAEDAVY 71
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 45.9 bits (108), Expect = 2e-07
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVS-LPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
I++ L PE + + FS +G + + + TG KG+AF+ F++ + + A+E
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 59
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 44.9 bits (106), Expect = 3e-07
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+ V L I+ +F+++G + ++ + +G+ G A V F K +A KA++
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMK 59
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 44.9 bits (106), Expect = 4e-07
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
D+ + V P + YI F++YG + + + + + +K +A KA
Sbjct: 3 DDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMSNTG------NWMHIRYQSKLQARKA 55
Query: 255 LEL 257
L
Sbjct: 56 LSK 58
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 44.8 bits (105), Expect = 5e-07
Identities = 13/61 (21%), Positives = 25/61 (40%)
Query: 196 ECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKAL 255
ECT+++ PP I + V + FA+++ ++KE+A +
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 60
Query: 256 E 256
E
Sbjct: 61 E 61
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 44.3 bits (104), Expect = 6e-07
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+ V LP + S+F G++ L + K TG+ G+ FV + ++A KA+
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 45.1 bits (106), Expect = 6e-07
Identities = 15/67 (22%), Positives = 28/67 (41%)
Query: 190 DKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 249
+ D I+V LP + F +G + + + TGK +G+ FV + +
Sbjct: 4 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 63
Query: 250 EAAKALE 256
A +A +
Sbjct: 64 AAERACK 70
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 43.9 bits (103), Expect = 7e-07
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
I+V L + ++ F ++GKV L K+T + +GF FV F +++ K E+
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 60
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 44.5 bits (104), Expect = 1e-06
Identities = 9/66 (13%), Positives = 22/66 (33%)
Query: 192 PDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 251
+ + ++ +P + + G+ G A V+F +++A
Sbjct: 4 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDA 63
Query: 252 AKALEL 257
K+ L
Sbjct: 64 RKSERL 69
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 44.3 bits (104), Expect = 1e-06
Identities = 15/66 (22%), Positives = 25/66 (37%)
Query: 192 PDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 251
P T ++ LP + + I+ F + + +LKGF + EF +
Sbjct: 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSL 70
Query: 252 AKALEL 257
AL L
Sbjct: 71 LSALSL 76
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 43.4 bits (102), Expect = 1e-06
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 190 DKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKE 249
+K ++V LPP+ + + +F KYGK V + K K F F+ T+
Sbjct: 2 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRT 55
Query: 250 EAAKALE 256
A A
Sbjct: 56 LAEIAKV 62
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 43.2 bits (101), Expect = 2e-06
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 191 KPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
+ V+ ++V + EA+ D I+ F YG++ + L + TG KG+A VE+ T ++
Sbjct: 2 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQ 61
Query: 251 AAKALE 256
A A E
Sbjct: 62 ALAAKE 67
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 42.7 bits (100), Expect = 2e-06
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
++V + + D + FS+YG V V + FAFV F+ + A
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDV-----FIPKPFRAFAFVTFADDQIAQSLCG 60
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 42.7 bits (100), Expect = 3e-06
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+YV L E + + + F +G +T + +P T K +GFAFVEF E+AA A++
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 43.2 bits (101), Expect = 3e-06
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
++V L + + +E +FS YG ++ + P T K KGFAFV F E A KA
Sbjct: 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 66
Query: 255 LE 256
Sbjct: 67 YA 68
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 42.7 bits (100), Expect = 3e-06
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
I V+ +P D I F Y + K+ G G A V F +++EA A+
Sbjct: 10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 69
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 42.3 bits (99), Expect = 4e-06
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 188 VQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFST 247
K T+ + L D ++ VF ++ V GK KG A++EF +
Sbjct: 8 CTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKS 62
Query: 248 KEEAAKALE 256
+ +A K LE
Sbjct: 63 EADAEKNLE 71
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 41.7 bits (97), Expect = 6e-06
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
DE ++V L + +E VFSKYG+++ V + K + T + +GF FV F ++A A
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 255 LE 256
+
Sbjct: 64 MM 65
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 42.1 bits (98), Expect = 6e-06
Identities = 21/72 (29%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKF--------KSTGKLKGFAFVE 244
D D IYV+ L D + F + G V K TGK KG A V
Sbjct: 5 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVS 64
Query: 245 FSTKEEAAKALE 256
+ A A+E
Sbjct: 65 YEDPPTAKAAVE 76
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 41.9 bits (98), Expect = 7e-06
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
I VE L D + +FSK+G V + + + A ++++ A A
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN----QFQALLQYADPVSAQHAKL 63
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 41.7 bits (97), Expect = 7e-06
Identities = 12/65 (18%), Positives = 17/65 (26%), Gaps = 11/65 (16%)
Query: 197 CTIYVEKLPPEAEHD-----YIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 251
+ + + ES+F Y K T K + FS A
Sbjct: 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSA 59
Query: 252 AKALE 256
A A
Sbjct: 60 ADARL 64
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 40.5 bits (94), Expect = 1e-05
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 194 VDECTIYVEKLPPEA-EHDYIESVFSKYGKVTYVSLPKF-KSTGKLKGFAFVEFSTKEEA 251
++ I + L E + + + F +G + +++P K AF+ F K+ A
Sbjct: 2 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSA 61
Query: 252 AKALEL 257
+AL++
Sbjct: 62 ERALQM 67
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 40.4 bits (94), Expect = 2e-05
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+ +++ E + + KYG+V +++ L G +V+F +E+A KA+
Sbjct: 30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCD-NLGDHLVGNVYVKFRREEDAEKAVI 86
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 40.6 bits (94), Expect = 3e-05
Identities = 19/67 (28%), Positives = 28/67 (41%)
Query: 191 KPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
P +Y++ LP EAE+ ++ F K V + GK G FVEF + +
Sbjct: 13 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEAD 72
Query: 251 AAKALEL 257
AL
Sbjct: 73 YKAALCR 79
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 39.6 bits (92), Expect = 3e-05
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 193 DVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAA 252
D T+YV L + I +FS+ G + + FVEF +AA
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAA 62
Query: 253 KALE 256
AL
Sbjct: 63 AALA 66
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 39.4 bits (91), Expect = 4e-05
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 192 PDVDE-CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
DV E T+++ L ++E + + V ++G + YV + T KG AF +F T+E
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEA 62
Query: 251 AAKALE 256
A K L
Sbjct: 63 AQKCLA 68
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 38.9 bits (90), Expect = 5e-05
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
I+++ L ++ + FS +G + + ++ KG+ FV F T+E A +A+E
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS--KGYGFVHFETQEAAERAIE 66
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 39.3 bits (91), Expect = 6e-05
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
+ +++ LP E + +F +G V + K T K F FV + A A
Sbjct: 17 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 76
Query: 255 LE 256
++
Sbjct: 77 IQ 78
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 38.9 bits (90), Expect = 7e-05
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 197 CTIYVEKLPPEA-EHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKAL 255
TIY+ L + + + +S+ + + + + + K++G AFV F A AL
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNAL 63
Query: 256 E 256
Sbjct: 64 R 64
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.0 bits (90), Expect = 7e-05
Identities = 17/67 (25%), Positives = 28/67 (41%)
Query: 191 KPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
++ + + LP + I FS V G+ G AFV+F+++E
Sbjct: 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEI 69
Query: 251 AAKALEL 257
A KAL+
Sbjct: 70 AEKALKK 76
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 38.8 bits (89), Expect = 7e-05
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 187 VVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFS 246
+V+ +++ L P ++ S+ ++ TG + F +V+F
Sbjct: 4 MVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLA-VVDVRTGTNRKFGYVDFE 62
Query: 247 TKEEAAKALEL 257
+ E+ KALEL
Sbjct: 63 SAEDLEKALEL 73
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 38.6 bits (89), Expect = 9e-05
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+++ LP A + I + FS + + G++ G A VEF+T E+A A+
Sbjct: 16 HCVHMRGLPYRATENDIYNFFSPLNPMRVH--IEIGPDGRVTGEADVEFATHEDAVAAMA 73
Query: 257 L 257
Sbjct: 74 K 74
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 38.5 bits (89), Expect = 9e-05
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+YV L + IE F+ + K++ +AFV FS +E+A +A++
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPG------AVERVKKIRDYAFVHFSNREDAVEAMK 62
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 38.0 bits (88), Expect = 1e-04
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 180 TKVRRTVVVQ---DKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGK 236
+ R V+++ D ++ + + ++ + + SK+G++ + L
Sbjct: 5 MRHERVVIIKNMFHPMDFEDDPLVLNEI-----REDLRVECSKFGQIRKLLLFD----RH 55
Query: 237 LKGFAFVEFSTKEEAAKA 254
G A V F EEA
Sbjct: 56 PDGVASVSFRDPEEADYC 73
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 37.0 bits (85), Expect = 2e-04
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
I+V + + E ++ F +YGK+ + + + +GK +GFAFV F + K +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 63
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 37.0 bits (85), Expect = 3e-04
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 191 KPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
K DV ++Y++ P +A D I+ G+V + + KG FV F + E
Sbjct: 1 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ-MRRTLHKAFKGSIFVVFDSIES 59
Query: 251 AAKALEL 257
A K +E
Sbjct: 60 AKKFVET 66
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 36.6 bits (84), Expect = 3e-04
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+Y+ L P D + +F G+AFV++ + A +A+E
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLA------GQVLLKSGYAFVDYPDQNWAIRAIE 55
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 36.3 bits (83), Expect = 3e-04
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+Y+ L P + + YGK+ K+T K KG+ FV+F + A KA+
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVT 58
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.0 bits (85), Expect = 4e-04
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 191 KPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
D +++V +P EA + ++ +FS+ G V L + TGK KG+ F E+ +E
Sbjct: 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 62
Query: 251 AAKALE 256
A A+
Sbjct: 63 ALSAMR 68
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 36.6 bits (84), Expect = 5e-04
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 189 QDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTK 248
+ ++V +P + +F ++GK+ V + + KGF FV F
Sbjct: 4 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS--KGFGFVTFENS 61
Query: 249 EEAAKALE 256
+A +A E
Sbjct: 62 ADADRARE 69
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 34.8 bits (79), Expect = 0.001
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
T+ V+ LP + + F G + +V + FA +EF+ + A A+
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKN--FRFARIEFARYDGALAAIT 58
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 34.7 bits (79), Expect = 0.002
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+ L + + V K G V + +P K ++F + T EE+ +A
Sbjct: 21 LVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARYRTTEESKRAYV 74
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 34.3 bits (78), Expect = 0.003
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
T+++ +PP + ++ +FS G V FK K + A ++ + EEA +AL
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVK----GFKFFQKDRKMALIQMGSVEEAVQALI 66
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 35.3 bits (80), Expect = 0.003
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 189 QDKPDVDEC-TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFST 247
Q P+ D + V +P + + +F +YG + V + + T + +G+ FV+F +
Sbjct: 34 QMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQS 93
Query: 248 KEEAAKALE 256
A +A+
Sbjct: 94 GSSAQQAIA 102
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 34.0 bits (77), Expect = 0.004
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
++V L + K+G + YV + FK A VEF + A + +
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QALVEFENIDSAKECVT 69
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 33.2 bits (75), Expect = 0.006
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
I V+ LP ++ + + Y K+ + K AFV E+A A++
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTLLNGEQAQNAIQ 58
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 32.9 bits (74), Expect = 0.009
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 194 VDECTIYVEKLPPEAEHDYIESVF---SKYGKVTYVSLPKFKSTGK---LKGFAFVEFST 247
V + ++V L + K+GK+ V + S A+V +
Sbjct: 6 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIR 65
Query: 248 KEEAAKALE 256
E+A +A++
Sbjct: 66 SEDALRAIQ 74
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 32.8 bits (74), Expect = 0.009
Identities = 17/66 (25%), Positives = 32/66 (48%)
Query: 191 KPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
P +Y++ L P + S+F+++ + + TG+++G AF+ F KE
Sbjct: 13 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEI 72
Query: 251 AAKALE 256
A +AL
Sbjct: 73 AWQALH 78
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 32.3 bits (73), Expect = 0.013
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
++V L P + F ++G + + K S FA++++ + + A A
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS------FAYIQYESLDAAQAACA 71
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 32.6 bits (74), Expect = 0.014
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 184 RTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTG--KLKGFA 241
+ + + +E ++ E + + SKYG V + +P+ G
Sbjct: 5 EVLCLMNMVLPEEL---LDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKI 61
Query: 242 FVEFSTKEEAAKALE 256
FVEF++ + KA++
Sbjct: 62 FVEFTSVFDCQKAMQ 76
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 30.9 bits (69), Expect = 0.057
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 191 KPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEE 250
+ + D +Y+ LP + +E++ + + S+G +G F + E+
Sbjct: 13 QQEQDPTNLYISNLPLSMDEQELENMLKPF-GQVISTRILRDSSGTSRGVGFARMESTEK 71
Query: 251 AAKALE 256
+
Sbjct: 72 CEAVIG 77
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 29.4 bits (65), Expect = 0.12
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+++ KLP E + ++ +GKVT + + K K+ AF+E +T+E A +
Sbjct: 10 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN------QAFLELATEEAAITMVN 62
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 29.1 bits (64), Expect = 0.28
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 195 DECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKA 254
+ I + LP I+ FS++G + V LP+ A VEF EA KA
Sbjct: 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKA 62
Query: 255 LE 256
Sbjct: 63 FR 64
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 28.6 bits (63), Expect = 0.28
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 7/65 (10%)
Query: 192 PDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEA 251
+ + V LPP ++ + G V Y + K VE+ KE+
Sbjct: 11 TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-------MGMVEYLRKEDM 63
Query: 252 AKALE 256
AL
Sbjct: 64 EYALR 68
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 28.1 bits (62), Expect = 0.35
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 8/60 (13%)
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
T+YV + FS +G + +S+ + AFV + E A +A+
Sbjct: 6 NTLYVYGEDMTPTL--LRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESADQAVA 57
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 27.5 bits (60), Expect = 0.50
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 197 CTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALE 256
+++ LP E + +F+++ V L + AFVEF+T+ ++ A E
Sbjct: 9 QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHD-----IAFVEFTTELQSNAAKE 63
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 27.1 bits (59), Expect = 1.5
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 6/63 (9%)
Query: 198 TIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTKEEAAKALEL 257
+ L + + + +FS +G++ ++ + + F K + A
Sbjct: 13 LKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG------AKEGIILFKEKAKEALGKAK 66
Query: 258 GLN 260
N
Sbjct: 67 DAN 69
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 26.1 bits (57), Expect = 1.7
Identities = 6/52 (11%), Positives = 17/52 (32%)
Query: 78 ISMETEASDNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKD 129
+ + ++D V L +G ++ + + + + KD
Sbjct: 16 LKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKD 67
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId:
9606]}
Length = 426
Score = 27.8 bits (61), Expect = 2.0
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 34 CNKLARLTHDPD-----DVVKALRKSKLLEVTEDG---TKVKGNIIRHFLVPISMETEAS 85
C++L + +V+ L S L++ T N + S+E
Sbjct: 335 CSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTR 394
Query: 86 DNVDKDLSDLQRKDG 100
N+ K L +L DG
Sbjct: 395 PNLSKTLKELGLVDG 409
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 25.7 bits (55), Expect = 2.2
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 199 IYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKSTGKLKGFAFVEFSTK 248
I + LP + + + + S Y K+ K KG AFV
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYE-------LKYCFVDKYKGTAFVTLLNG 43
>d2i9xa1 d.366.1.1 (A:1-84) Putative septation protein SpoVG
{Staphylococcus epidermidis [TaxId: 1282]}
Length = 84
Score = 25.0 bits (55), Expect = 3.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 222 KVTYVSLPKFKSTGKLKGFAFVEF 245
KVT V L K ++ G++K +
Sbjct: 2 KVTDVRLRKIQTDGRMKALVSITL 25
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 26.2 bits (57), Expect = 4.9
Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 33/233 (14%)
Query: 11 RKDRFFSQLLQESPEIEVSVFLKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTKVKGNI 70
+K++ E ++F + D V A ++ L++T + +
Sbjct: 42 KKEQPSHYKYHEKHYANAAIFADSKNQKTICQQAVDTVLAKKRVDSLQLTREQM-LTNRF 100
Query: 71 IRHFLVPISMETEASDNVDKDLSDLQRKDGGGRHRKKQLYQQIMNLMEFYLSDSNLRKDR 130
M+ D+ + + + + L +
Sbjct: 101 NDLLD---RMDIMFGSTGSADIEE---------------WMAGVAWLHCLLPKMDSVVYD 142
Query: 131 FFSQLLQESPEIEVSVF---------LKCNKLARLTHDPDDVVKALRKSKLLEVTEDGTK 181
F ++ P+ +F L L + E G
Sbjct: 143 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGK---ALNVNLPLDRLNFELGVA 199
Query: 182 VRRTVVVQDKPDVDECTIYVEKLPPEAEHDYIESVFSKYGKVTYVSLPKFKST 234
+ + +VV + DV LP + ++++ V+L K
Sbjct: 200 IDQFLVVFE--DVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLN 250
>d2ia9a1 d.366.1.1 (A:1-92) Putative septation protein SpoVG
{Bacillus subtilis [TaxId: 1423]}
Length = 92
Score = 24.3 bits (53), Expect = 9.4
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 222 KVTYVSLPKFKSTGKLKGFAFVEF 245
+VT V L + + G+++ A +
Sbjct: 2 EVTDVRLRRVNTDGRMRAIASITL 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.384
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,136,377
Number of extensions: 53947
Number of successful extensions: 291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 96
Length of query: 299
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,240,546
Effective search space: 265476844
Effective search space used: 265476844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)