BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3939
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P45842|RL34_AEDAL 60S ribosomal protein L34 OS=Aedes albopictus GN=RpL34 PE=2 SV=2
Length = 130
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 55/78 (70%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
V+TPGGRLVY Y+KK VP+CG CK KL GI+ +R ER RM RR K V R++GGVLCH
Sbjct: 23 VRTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSERPRMCRRLKTVTRTFGGVLCH 82
Query: 68 KCVKEKFIYCFFYSHCKI 85
+C++E+ I F K+
Sbjct: 83 RCLRERIIRAFLIDEQKV 100
>sp|Q9NB34|RL34_AEDTR 60S ribosomal protein L34 OS=Aedes triseriatus GN=RpL34 PE=2 SV=3
Length = 139
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 55/78 (70%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
V+TPGGRLVY Y+KK VP+CG CK KL GI+ +R ER RM RR K V R++GGVLCH
Sbjct: 23 VRTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSERPRMCRRLKTVTRTFGGVLCH 82
Query: 68 KCVKEKFIYCFFYSHCKI 85
+C++E+ I F K+
Sbjct: 83 RCLRERIIRAFLIDEQKV 100
>sp|Q54LV8|RL34_DICDI 60S ribosomal protein L34 OS=Dictyostelium discoideum GN=rpl34
PE=3 SV=1
Length = 122
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 46/77 (59%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
VKTPGGRLVY Y+ K GKVPRCG C + L GI R + + + R+ V R+YGG C
Sbjct: 23 VKTPGGRLVYQYIGKTGKVPRCGECGVNLAGIPALRPYQYKNLPKSRRTVSRAYGGSKCA 82
Query: 68 KCVKEKFIYCFFYSHCK 84
KCV+ + + F K
Sbjct: 83 KCVRNRIVRAFLIEEQK 99
>sp|P0DJ23|RL34_TETTS 60S ribosomal protein L34 OS=Tetrahymena thermophila (strain SB210)
GN=RPL34 PE=1 SV=1
Length = 123
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGH--CKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVL 65
VKTPGGRLV Y+KK +C C + L GI + R E + ++R K V R YGG L
Sbjct: 23 VKTPGGRLVAQYVKKVVNYTKCSEAGCNVALNGIAQVRPAEYATIARSAKTVSRVYGGEL 82
Query: 66 CHKCVKEKFIYCFFYSHCKI 85
CH CV+ + I F KI
Sbjct: 83 CHTCVRSRIIRAFLTEEVKI 102
>sp|O42846|RL34A_SCHPO 60S ribosomal protein L34-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl34a PE=3 SV=1
Length = 112
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
+KTPG + Y ++KK G +PRCG + L GI R E +R+S +K V+R+YGG L
Sbjct: 23 IKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPREFARLSHNKKTVQRAYGGCLSA 82
Query: 68 KCVKEKFIYCFFYSHCKI 85
VK++ + F KI
Sbjct: 83 NAVKDRIVRAFLIEEQKI 100
>sp|Q9URT8|RL34B_SCHPO 60S ribosomal protein L34-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl34b PE=1 SV=1
Length = 111
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
+KTPG + Y ++KK G +PRCG + L GI R E +R+S +K V+R+YGG L
Sbjct: 23 IKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPREFARLSHNQKKVQRAYGGCLSA 82
Query: 68 KCVKEKFIYCFFYSHCKI 85
VK++ + F KI
Sbjct: 83 NAVKDRIVRAFLIEEQKI 100
>sp|P41098|RL34_TOBAC 60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1
Length = 120
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIE--RSRMSRRRKMVKRSYGGVL 65
VKTPGG+L+Y KK P+C ++ GI R E RSR+SR R+ V R+YGGVL
Sbjct: 23 VKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVL 82
Query: 66 CHKCVKEKFIYCFFYSHCKI--KLPGIEKAR 94
V+E+ I F KI K+ I+KA+
Sbjct: 83 SGSAVRERIIRAFLVEEQKIVKKVLKIQKAK 113
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 86 KLPGIEKARSIE--RSRMSRRRKMVKRSYGGVLCHKCVKE 123
++ GI R E RSR+SR R+ V R+YGGVL V+E
Sbjct: 50 RIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRE 89
>sp|P40590|RL34_PEA 60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1
Length = 120
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIE--RSRMSRRRKMVKRSYGGVL 65
VKTPGG+LVY KK P+C ++ GI R E RSR+SR R+ V R+YGGVL
Sbjct: 23 VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVL 82
Query: 66 CHKCVKEKFIYCFFYSHCKI 85
V+E+ I F KI
Sbjct: 83 SGGAVRERIIRAFLVEEQKI 102
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 86 KLPGIEKARSIE--RSRMSRRRKMVKRSYGGVLCHKCVKE 123
++ GI R E RSR+SR R+ V R+YGGVL V+E
Sbjct: 50 RIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGGAVRE 89
>sp|Q42351|RL341_ARATH 60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2
SV=1
Length = 120
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIE--RSRMSRRRKMVKRSYGGVL 65
VKTPGG+LVY KK P+C ++ GI R E RSR+SR R+ V R+YGGVL
Sbjct: 23 VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPSEYKRSRLSRNRRTVNRAYGGVL 82
Query: 66 CHKCVKEKFIYCFFYSHCKI 85
V+E+ I F KI
Sbjct: 83 SGSAVRERIIRAFLVEEQKI 102
>sp|Q9FE65|RL342_ARATH 60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=3
SV=1
Length = 119
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIE--RSRMSRRRKMVKRSYGGVL 65
VKTPGG+L Y KK P+C ++ GI R E RSR+SR R+ V R+YGGVL
Sbjct: 23 VKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVL 82
Query: 66 CHKCVKEKFIYCFFYSHCKI 85
V+E+ I F KI
Sbjct: 83 SGSAVRERIIRAFLVEEQKI 102
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 86 KLPGIEKARSIE--RSRMSRRRKMVKRSYGGVLCHKCVKE 123
++ GI R E RSR+SR R+ V R+YGGVL V+E
Sbjct: 50 RIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRE 89
>sp|Q90YT5|RL34_ICTPU 60S ribosomal protein L34 OS=Ictalurus punctatus GN=rpl34 PE=3 SV=3
Length = 117
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 9 KTPGGRLVYHYLKKAGKVPR--CGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLC 66
+TPG R+VY Y KK GK P+ CG C +L GI R R+S+ +K V R+YGG +C
Sbjct: 24 RTPGNRIVYLYTKKTGKAPKSACGICPGRLRGIRAVRPQVLMRLSKTKKHVSRAYGGSMC 83
Query: 67 HKCVKEKFIYCFFYSHCKI 85
KCV+++ F KI
Sbjct: 84 AKCVRDRIKRAFLIEEQKI 102
>sp|Q7ZWJ7|RL34_DANRE 60S ribosomal protein L34 OS=Danio rerio GN=rpl34 PE=3 SV=3
Length = 117
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 9 KTPGGRLVYHYLKKAGKVPR--CGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLC 66
+TPG R+VY Y KK GK P+ CG C +L GI R R+S+ +K V R+YGG +C
Sbjct: 24 RTPGNRIVYLYTKKTGKSPKSACGICPGRLRGIRAVRPQVLMRLSKTKKHVSRAYGGSMC 83
Query: 67 HKCVKEKFIYCFFYSHCKIKLPGIEKARSIERSR 100
KCV+++ F KI + ++ ++S+
Sbjct: 84 AKCVRDRIKRAFLIEEQKIVVKVLKAQAQTQKSK 117
>sp|Q9D1R9|RL34_MOUSE 60S ribosomal protein L34 OS=Mus musculus GN=Rpl34 PE=3 SV=2
Length = 117
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 9 KTPGGRLVYHYLKKAGKVPR--CGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLC 66
+TPG R+VY Y KK GK P+ CG C +L G+ R R+S+ +K V R+YGG +C
Sbjct: 24 RTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTQKHVSRAYGGSMC 83
Query: 67 HKCVKEKFIYCFFYSHCKI 85
KCV+++ F KI
Sbjct: 84 AKCVRDRIKRAFLIEEQKI 102
>sp|P49207|RL34_HUMAN 60S ribosomal protein L34 OS=Homo sapiens GN=RPL34 PE=1 SV=3
Length = 117
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 9 KTPGGRLVYHYLKKAGKVPR--CGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLC 66
+TPG R+VY Y KK GK P+ CG C +L G+ R R+S+ +K V R+YGG +C
Sbjct: 24 RTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMC 83
Query: 67 HKCVKEKFIYCFFYSHCKI 85
KCV+++ F KI
Sbjct: 84 AKCVRDRIKRAFLIEEQKI 102
>sp|P87262|RL34A_YEAST 60S ribosomal protein L34-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL34A PE=1 SV=1
Length = 121
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 42/78 (53%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
VKTPGG L ++KK P+CG C L GI R + + +S+ K V R+YGG C
Sbjct: 23 VKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCA 82
Query: 68 KCVKEKFIYCFFYSHCKI 85
CVKE+ I F KI
Sbjct: 83 NCVKERIIRAFLIEEQKI 100
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 82 HCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE 123
C L GI R + + +S+ K V R+YGG C CVKE
Sbjct: 46 DCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKE 87
>sp|P40525|RL34B_YEAST 60S ribosomal protein L34-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL34B PE=1 SV=1
Length = 121
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
VKTPGG L ++KK P+CG C L GI R + + +S+ K V R+YGG C
Sbjct: 23 VKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCA 82
Query: 68 KCVKEKFIYCFFYSHCKI 85
CVKE+ + F KI
Sbjct: 83 NCVKERIVRAFLIEEQKI 100
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 82 HCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE 123
C L GI R + + +S+ K V R+YGG C CVKE
Sbjct: 46 DCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKE 87
>sp|Q8TZB2|RL34_METKA 50S ribosomal protein L34e OS=Methanopyrus kandleri (strain AV19
/ DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl34e PE=3
SV=1
Length = 113
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 9 KTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHK 68
+TPGGR V H+ KK P+CG C +L G+ + R++E + +K R YGGVLC +
Sbjct: 17 RTPGGRTVIHFEKKIPNWPKCGACGRRLNGVMRGRNVELKNAPKTQKRPNRPYGGVLCPE 76
Query: 69 C----VKEKFIYCFF 79
C +K+K Y F+
Sbjct: 77 CARKLIKDKVRYKFW 91
>sp|Q9LJW6|RL343_ARATH 60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2
SV=1
Length = 120
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIE--RSRMSRRRKMVKRSYGGVL 65
VKTPGG+L Y K P+C ++ GI R E RSR++R + V R+YGGVL
Sbjct: 23 VKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNERTVNRAYGGVL 82
Query: 66 CHKCVKEKFIYCFFYSHCKI 85
V+E+ + F KI
Sbjct: 83 SGVAVRERIVRAFLVEEQKI 102
>sp|P54053|RL34_METJA 50S ribosomal protein L34e OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=rpl34e PE=3 SV=1
Length = 89
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 10 TPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKC 69
TPGGR+V HY ++ P+C C +L G+ + R +E ++ + ++ +R YGG LC +C
Sbjct: 18 TPGGRIVIHYKRRKPGKPKCAICGAELHGVPRGRPVEIRKLPKSQRRPERPYGGYLCPRC 77
Query: 70 VKEKFI 75
+K I
Sbjct: 78 LKRLMI 83
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 83 CKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVK 122
C +L G+ + R +E ++ + ++ +R YGG LC +C+K
Sbjct: 40 CGAELHGVPRGRPVEIRKLPKSQRRPERPYGGYLCPRCLK 79
>sp|Q8SSA2|RL34_ENCCU 60S ribosomal protein L34 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPL34 PE=1 SV=1
Length = 110
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
V+TP G+LV +KK K RC C L I + R E SR + V R YG C
Sbjct: 22 VRTPSGKLVNRRVKKHSKKHRCHECNAILGSIARMRPAEFSRQKVSARRVNRPYGATTCG 81
Query: 68 KCVKEKFIYCFFYSHCKI 85
+CV+EK I F + +I
Sbjct: 82 RCVREKIISAFLGNEERI 99
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 47 RSRMSRRRKMVKRSYGGVLCHKCVKE--KFIYCFFYSHCKIKLPGIEKARSIERSRMSRR 104
++R +RRRK+ R+ G L ++ VK+ K C C L I + R E SR
Sbjct: 13 KTRSNRRRKV--RTPSGKLVNRRVKKHSKKHRCH---ECNAILGSIARMRPAEFSRQKVS 67
Query: 105 RKMVKRSYGGVLCHKCVKE 123
+ V R YG C +CV+E
Sbjct: 68 ARRVNRPYGATTCGRCVRE 86
>sp|A9A697|RL34_METM6 50S ribosomal protein L34e OS=Methanococcus maripaludis (strain
C6 / ATCC BAA-1332) GN=rpl34e PE=3 SV=1
Length = 89
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 9 KTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHK 68
K PG + HY +K CG C L G+ + R++E +++++ +K +R++GG LC K
Sbjct: 17 KAPGNSSIVHYRRKKQSNAVCGACGALLNGVPRGRAVEITKLAKTQKRPERAFGGNLCPK 76
Query: 69 CVKEKFI 75
CVK+ +
Sbjct: 77 CVKKMMV 83
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 29/41 (70%)
Query: 83 CKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE 123
C L G+ + R++E +++++ +K +R++GG LC KCVK+
Sbjct: 40 CGALLNGVPRGRAVEITKLAKTQKRPERAFGGNLCPKCVKK 80
>sp|A6USC2|RL34_METVS 50S ribosomal protein L34e OS=Methanococcus vannielii (strain SB
/ ATCC 35089 / DSM 1224) GN=rpl34e PE=3 SV=1
Length = 89
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 9 KTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHK 68
+ PG R V H +K +CG C L G+ R+++ S++S+ ++ +R++GG LC K
Sbjct: 17 RAPGNRRVLHIRRKKQSSAKCGACGALLNGVPSLRTVQVSKLSKTQRRPERAFGGALCPK 76
Query: 69 CVKEKFI 75
CVK+ +
Sbjct: 77 CVKKMMV 83
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 83 CKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE 123
C L G+ R+++ S++S+ ++ +R++GG LC KCVK+
Sbjct: 40 CGALLNGVPSLRTVQVSKLSKTQRRPERAFGGALCPKCVKK 80
>sp|A6VJT2|RL34_METM7 50S ribosomal protein L34e OS=Methanococcus maripaludis (strain
C7 / ATCC BAA-1331) GN=rpl34e PE=3 SV=1
Length = 89
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 9 KTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHK 68
K PG + HY +K CG C L G+ + R++E +++++ +K +R++GG LC K
Sbjct: 17 KAPGNSSIVHYRRKKQSKAVCGACGALLNGVPRGRAVEITKLAKTQKRPERAFGGNLCPK 76
Query: 69 CVKEKFI 75
CVK+ +
Sbjct: 77 CVKKMMV 83
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 29/41 (70%)
Query: 83 CKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE 123
C L G+ + R++E +++++ +K +R++GG LC KCVK+
Sbjct: 40 CGALLNGVPRGRAVEITKLAKTQKRPERAFGGNLCPKCVKK 80
>sp|A1RXV1|RL34_THEPD 50S ribosomal protein L34e OS=Thermofilum pendens (strain Hrk 5)
GN=rpl34e PE=3 SV=1
Length = 91
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRR-KMVKRSYGGVLC 66
V+TPGGRL H + K P+C C + G+ K SR+ RR +M R YGG LC
Sbjct: 16 VRTPGGRLALHVIDKKHDYPKCAICGRPIQGVPKL----TSRLERRGVRMPTRPYGGYLC 71
Query: 67 HKCVKEKFIYCFFYSHCK 84
H+C+++ + S K
Sbjct: 72 HECLRKGIKLSVWMSASK 89
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 12/84 (14%)
Query: 43 RSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIY--CFFYSHCKIKLPGIEKARSIERSR 100
R RSR S++RK+V R+ GG L + +K Y C C + G+ K S R
Sbjct: 3 RPALRSR-SKKRKLV-RTPGGRLALHVIDKKHDYPKCAI---CGRPIQGVPKLTS----R 53
Query: 101 MSRRR-KMVKRSYGGVLCHKCVKE 123
+ RR +M R YGG LCH+C+++
Sbjct: 54 LERRGVRMPTRPYGGYLCHECLRK 77
>sp|A4FYK0|RL34_METM5 50S ribosomal protein L34e OS=Methanococcus maripaludis (strain
C5 / ATCC BAA-1333) GN=rpl34e PE=3 SV=1
Length = 89
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 9 KTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHK 68
K PG + HY +K CG C L G+ + R++E +++++ K +R++GG LC K
Sbjct: 17 KAPGNSSIVHYRRKKQSKAVCGACGALLNGVPRGRAVEITKLAKTEKRPERAFGGNLCPK 76
Query: 69 CVKEKFI 75
CVK+ +
Sbjct: 77 CVKKMMV 83
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 83 CKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE 123
C L G+ + R++E +++++ K +R++GG LC KCVK+
Sbjct: 40 CGALLNGVPRGRAVEITKLAKTEKRPERAFGGNLCPKCVKK 80
>sp|Q6LZK0|RL34_METMP 50S ribosomal protein L34e OS=Methanococcus maripaludis (strain
S2 / LL) GN=rpl34e PE=3 SV=1
Length = 89
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 9 KTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHK 68
K PG + HY +K CG C L G+ + R++E +++++ K +R +GG LC K
Sbjct: 17 KAPGNSSIVHYRRKKQSKAVCGACGALLNGVPRGRAVEITKLAKTEKRPERPFGGNLCPK 76
Query: 69 CVKEKFI 75
CVK+ +
Sbjct: 77 CVKKMMV 83
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 83 CKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE 123
C L G+ + R++E +++++ K +R +GG LC KCVK+
Sbjct: 40 CGALLNGVPRGRAVEITKLAKTEKRPERPFGGNLCPKCVKK 80
>sp|O05981|RL34_SULAC 50S ribosomal protein L34e OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rpl34e PE=3 SV=1
Length = 87
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
VK P G+ HY ++ + RCG CK L G++ + + S+ +R +R YGG LCH
Sbjct: 16 VKLPSGKSTIHYERRKDNIARCGMCKKPLNGVKNNYTYKYSKTEKR---PERVYGGYLCH 72
Query: 68 KCVK 71
KC++
Sbjct: 73 KCLE 76
>sp|A2BME5|RL34_HYPBU 50S ribosomal protein L34e OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl34e PE=3 SV=1
Length = 106
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
V+TPGG HY K+ RC C L G+ + R +E ++ + K +R YGGVLC
Sbjct: 16 VRTPGGETKIHYEKRRPGPARCAICGRPLNGVPRLRPVELRKLPKTAKRPERMYGGVLCA 75
Query: 68 KCVKEKFIYCFFYSHCKIKL 87
+C+ EK + S +L
Sbjct: 76 ECL-EKLLKKSIRSQVLAQL 94
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 83 CKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVK 122
C L G+ + R +E ++ + K +R YGGVLC +C++
Sbjct: 40 CGRPLNGVPRLRPVELRKLPKTAKRPERMYGGVLCAECLE 79
>sp|A6UW33|RL34_META3 50S ribosomal protein L34e OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rpl34e PE=3 SV=1
Length = 89
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%)
Query: 7 SVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLC 66
S + PG + + H+ + +CG C L G+ + R IE +++S+ K +R YGG LC
Sbjct: 15 SKRGPGNKTLTHHRRSKVSKAKCGACGALLNGVPRGRKIEIAKLSKTEKRPERPYGGFLC 74
Query: 67 HKCVKEKFI 75
KC+K I
Sbjct: 75 PKCLKRLMI 83
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 83 CKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVK 122
C L G+ + R IE +++S+ K +R YGG LC KC+K
Sbjct: 40 CGALLNGVPRGRKIEIAKLSKTEKRPERPYGGFLCPKCLK 79
>sp|O26137|RL34_METTH 50S ribosomal protein L34e OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpl34e PE=3 SV=1
Length = 88
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 9 KTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHK 68
KTPGGR V HY +K C C L G+ + R E ++S+ +K R YGG C
Sbjct: 17 KTPGGRTVTHYRRKKPSKHVCAGCGKPLHGVPRGRPYEIRKLSKSKKRPNRPYGGYYCSS 76
Query: 69 CVKEKF 74
C ++ F
Sbjct: 77 CARKVF 82
>sp|Q29223|RL34_PIG 60S ribosomal protein L34 OS=Sus scrofa GN=RPL34 PE=3 SV=2
Length = 117
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 9 KTPGGRLVYHYLKKAGKVPR--CGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLC 66
+TPG R+VY Y KK GK P+ CG C +L G+ R R+S+ +K V+
Sbjct: 24 RTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVQPGLWWFHV 83
Query: 67 HKCVKEKFIYCFFYSHCKI 85
KCV+++ F KI
Sbjct: 84 AKCVRDRXKRAFLIEEQKI 102
>sp|Q9UZJ7|RL34_PYRAB 50S ribosomal protein L34e OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl34e PE=3 SV=1
Length = 91
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
V+TPGGR+V H+ ++ K+ C C L GI + R +E ++ + +K +R Y LC
Sbjct: 15 VRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKTKKRPERPYPH-LCP 73
Query: 68 KCVK 71
KC++
Sbjct: 74 KCMR 77
>sp|Q2NFY3|RL34_METST 50S ribosomal protein L34e OS=Methanosphaera stadtmanae (strain
DSM 3091) GN=rpl34e PE=3 SV=1
Length = 89
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 9 KTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHK 68
+ PGGR V HY KK C C L + + R E ++S+ ++ R YGG+ C
Sbjct: 17 RVPGGRKVEHYKKKKPSKHVCAKCGKVLDAVPRGRPYEIRKLSKNQRRPNRPYGGMYCTN 76
Query: 69 CVKE 72
C KE
Sbjct: 77 CTKE 80
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 87 LPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE 123
L + + R E ++S+ ++ R YGG+ C C KE
Sbjct: 44 LDAVPRGRPYEIRKLSKNQRRPNRPYGGMYCTNCTKE 80
>sp|A3MV68|RL34_PYRCJ 50S ribosomal protein L34e OS=Pyrobaculum calidifontis (strain
JCM 11548 / VA1) GN=rpl34e PE=3 SV=1
Length = 84
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
VKTPGGR V HY K+A VP+C L G+ + R +S R R YGGV+ H
Sbjct: 16 VKTPGGRTVVHYEKRAKGVPKCAVTGQPLGGMNS--KVYRFGISTR--APSRPYGGVVSH 71
Query: 68 KCVKEKFIYC 77
K + Y
Sbjct: 72 KVLARAIRYA 81
>sp|A5UL62|RL34_METS3 50S ribosomal protein L34e OS=Methanobrevibacter smithii (strain
PS / ATCC 35061 / DSM 861) GN=rpl34e PE=3 SV=1
Length = 88
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%)
Query: 9 KTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHK 68
TPGG V Y KK C C L G+ + R E +++++ K R YGG LC
Sbjct: 17 NTPGGENVLRYKKKKPSKHVCAECGKLLHGVPRGRPYEINKLAKSHKRPNRPYGGYLCSS 76
Query: 69 CVKEKF 74
C ++ F
Sbjct: 77 CARKHF 82
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 81 SHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE 123
+ C L G+ + R E +++++ K R YGG LC C ++
Sbjct: 38 AECGKLLHGVPRGRPYEINKLAKSHKRPNRPYGGYLCSSCARK 80
>sp|Q8U2L3|RL34_PYRFU 50S ribosomal protein L34e OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl34e PE=1 SV=1
Length = 89
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
V+TPGGR+V H+ +K K+ C C L GI + R +E ++ + +K +R LC
Sbjct: 15 VRTPGGRVVIHFERKKPKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMPH-LCP 73
Query: 68 KCVKE 72
+C+++
Sbjct: 74 RCMRK 78
>sp|B1YAJ9|RL34_PYRNV 50S ribosomal protein L34e OS=Pyrobaculum neutrophilum (strain
DSM 2338 / JCM 9278 / V24Sta) GN=rpl34e PE=3 SV=1
Length = 84
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
V+TPGGR HY K+A PRC + + G+ K I R +S R R YGGV H
Sbjct: 16 VRTPGGRTAVHYEKRAKGAPRCPITGLAIGGMNK--KIYRFGVSNR--APTRPYGGVFSH 71
Query: 68 KCV 70
K +
Sbjct: 72 KAL 74
>sp|B6YSP0|RL34_THEON 50S ribosomal protein L34e OS=Thermococcus onnurineus (strain
NA1) GN=rpl34e PE=3 SV=1
Length = 90
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
V+TPGGR V H+ +K K+ C C L G+ + R E ++ + +K +R Y LC
Sbjct: 15 VRTPGGRTVIHFERKKPKIAHCAMCGRPLNGVPRGRPSELRKLPKTKKRPERPYPN-LCP 73
Query: 68 KCVKE 72
C+++
Sbjct: 74 SCMRK 78
>sp|Q5JJF7|RL34_PYRKO 50S ribosomal protein L34e OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=rpl34e PE=3 SV=1
Length = 90
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
V+TPGGR V H+ ++ KV C C L G+ + R E ++ + +K +R Y LC
Sbjct: 15 VRTPGGRTVIHFERRKPKVAHCAMCGRPLNGVPRGRPSELRKLPKTKKRPERPYPN-LCP 73
Query: 68 KCVKE 72
C+++
Sbjct: 74 SCMRK 78
>sp|O74006|RL34_PYRHO 50S ribosomal protein L34e OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl34e PE=3 SV=2
Length = 91
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
V+TPGGR+V H+ +K K+ C C L GI + R +E ++ + +K +R LC
Sbjct: 15 VRTPGGRVVVHFERKKPKIAHCAICGRPLNGIPRGRPVEMRKLPKTKKRPERPM-PYLCP 73
Query: 68 KCVK 71
+C++
Sbjct: 74 RCMR 77
>sp|A3DND2|RL34_STAMF 50S ribosomal protein L34e OS=Staphylothermus marinus (strain
ATCC 43588 / DSM 3639 / F1) GN=rpl34e PE=3 SV=1
Length = 92
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
V+TPGG++V HY + RC C L G+ + + ++++ K +R YGG +C
Sbjct: 16 VRTPGGKVVIHYEPRKPGPARCAICGKPLNGVPRLIPSKLRKLAKTEKRPERPYGGYICP 75
Query: 68 KCV 70
+C+
Sbjct: 76 RCL 78
>sp|Q8ZTJ2|RL34_PYRAE 50S ribosomal protein L34e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=ribL34e PE=3 SV=1
Length = 84
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
VKTPGGR V HY K+A VP+C + + G+ K + R + + R YGGV H
Sbjct: 16 VKTPGGRTVIHYEKRAKGVPKCPITGLPIGGMNK----KVYRFGIKIRAPSRPYGGVYSH 71
Query: 68 KCV 70
K +
Sbjct: 72 KVL 74
>sp|A1RRJ4|RL34_PYRIL 50S ribosomal protein L34e OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rpl34e PE=3 SV=1
Length = 84
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
V+TPGGR V HY K+A VP+C + L G+ + R +S R R YGGV H
Sbjct: 16 VRTPGGRTVVHYEKRAKGVPKCPVTNLPLGGMNH--KVYRFGISIR--APSRPYGGVFSH 71
Query: 68 KCV 70
K +
Sbjct: 72 KVL 74
>sp|P58026|RL34_AERPE 50S ribosomal protein L34e OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rpl34e PE=3 SV=2
Length = 90
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%)
Query: 9 KTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHK 68
+TPGG V HY ++ RC C L G+ + R R+S+ K +R YGGVLC
Sbjct: 17 RTPGGSTVVHYERRKPGPARCARCGRPLGGVPRGRPPRVRRLSKTAKRPERPYGGVLCST 76
Query: 69 CVKE 72
C+ E
Sbjct: 77 CLAE 80
>sp|C5A259|RL34_THEGJ 50S ribosomal protein L34e OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=rpl34e PE=3 SV=1
Length = 89
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
V+TPGGR V H+ ++ KV C C L G+ + R E ++ + K +R Y LC
Sbjct: 15 VRTPGGRTVIHFERRKPKVAHCAMCGRPLNGVPRGRPSELRKLPKTAKRPERPYPN-LCP 73
Query: 68 KCVKE 72
C+++
Sbjct: 74 SCMRK 78
>sp|C3MVX7|RL34_SULIM 50S ribosomal protein L34e OS=Sulfolobus islandicus (strain
M.14.25 / Kamchatka #1) GN=rpl34e PE=3 SV=1
Length = 85
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
VK P G+ HY +K +P+C CK L G+ K + + S +R +R +GG LC
Sbjct: 16 VKLPSGKTAIHYERKKNDIPKCAMCKKPLHGV-KTNFLHKYGKSEKRP--ERPFGGYLCS 72
Query: 68 KCVKE 72
C+ +
Sbjct: 73 SCLAQ 77
>sp|C4KHI2|RL34_SULIK 50S ribosomal protein L34e OS=Sulfolobus islandicus (strain
M.16.4 / Kamchatka #3) GN=rpl34e PE=3 SV=1
Length = 85
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
VK P G+ HY +K +P+C CK L G+ K + + S +R +R +GG LC
Sbjct: 16 VKLPSGKTAIHYERKKNDIPKCAMCKKPLHGV-KTNFLHKYGKSEKRP--ERPFGGYLCS 72
Query: 68 KCVKE 72
C+ +
Sbjct: 73 SCLAQ 77
>sp|C3N5V3|RL34_SULIA 50S ribosomal protein L34e OS=Sulfolobus islandicus (strain
M.16.27) GN=rpl34e PE=3 SV=1
Length = 85
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
VK P G+ HY +K +P+C CK L G+ K + + S +R +R +GG LC
Sbjct: 16 VKLPSGKTAIHYERKKNDIPKCAMCKKPLHGV-KTNFLHKYGKSEKRP--ERPFGGYLCS 72
Query: 68 KCVKE 72
C+ +
Sbjct: 73 SCLAQ 77
>sp|C6A186|RL34_THESM 50S ribosomal protein L34e OS=Thermococcus sibiricus (strain MM
739 / DSM 12597) GN=rpl34e PE=3 SV=1
Length = 88
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 8 VKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCH 67
V+TPGGR V H+ +K KV C C L GI + R E ++ + +K +R LC
Sbjct: 15 VRTPGGRTVIHFERKKPKVAHCAMCGRPLNGIPRGRPNELRKLPKTKKRPERPMPN-LCP 73
Query: 68 KCVK 71
C++
Sbjct: 74 SCMR 77
>sp|P11250|RL34_RAT 60S ribosomal protein L34 OS=Rattus norvegicus GN=Rpl34 PE=1 SV=3
Length = 117
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 9 KTPGGRLVYHYLKKAGKVPR--CGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLC 66
+TPG R+VY Y KK GK P+ CG +L G+ R R+S+ +K V++ +
Sbjct: 24 RTPGNRIVYLYTKKVGKAPKSACGVLPGRLRGVVAVRPKVLMRLSKTKKHVQQGLWWLHV 83
Query: 67 HKCVKEKFIYCFFYSHCKI 85
+ ++ F KI
Sbjct: 84 RQVCPDRIKRAFLIEEQKI 102
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,281,854
Number of Sequences: 539616
Number of extensions: 1583248
Number of successful extensions: 4726
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4597
Number of HSP's gapped (non-prelim): 108
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)