Query psy3939
Match_columns 123
No_of_seqs 161 out of 404
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 21:12:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_g 60S ribosomal protein L 100.0 2E-47 6.9E-52 278.8 5.0 96 5-100 20-115 (121)
2 4a18_L RPL34; ribosome, eukary 100.0 3E-46 1E-50 273.1 5.3 96 4-99 19-116 (123)
3 3iz5_i 60S ribosomal protein L 100.0 7.4E-47 2.5E-51 275.1 1.9 93 5-97 20-114 (119)
4 3j21_d 50S ribosomal protein L 100.0 1.7E-34 5.7E-39 201.1 6.1 74 4-78 11-84 (89)
5 3u5e_g 60S ribosomal protein L 99.4 1E-14 3.5E-19 106.2 -0.2 48 62-123 40-87 (121)
6 3iz5_i 60S ribosomal protein L 99.4 1.7E-14 5.7E-19 104.9 -1.7 48 62-123 40-89 (119)
7 4a18_L RPL34; ribosome, eukary 99.4 2.2E-14 7.4E-19 104.7 -2.1 48 62-123 40-89 (123)
8 3j21_d 50S ribosomal protein L 99.3 1.6E-13 5.6E-18 95.3 -2.5 47 62-123 32-78 (89)
9 1qxf_A GR2, 30S ribosomal prot 62.0 6.2 0.00021 25.5 2.8 35 1-36 1-36 (66)
10 2vqe_N 30S ribosomal protein S 38.0 26 0.00087 21.9 2.7 22 55-78 31-52 (61)
11 3t7l_A Zinc finger FYVE domain 37.3 8.2 0.00028 25.4 0.3 42 25-79 19-60 (90)
12 3u5c_b RP61, YS20, 40S ribosom 36.8 49 0.0017 22.1 4.1 32 4-36 31-63 (82)
13 4b2u_A S67; toxin, ICK; NMR {S 33.9 12 0.00043 21.0 0.7 18 106-123 10-27 (36)
14 3p2a_A Thioredoxin 2, putative 31.7 1.1E+02 0.0037 19.9 5.5 65 8-72 6-73 (148)
15 3iz6_X 40S ribosomal protein S 30.1 70 0.0024 21.5 4.0 33 4-37 33-66 (86)
16 2xzm_6 RPS27E; ribosome, trans 29.1 34 0.0012 22.8 2.3 32 4-36 29-61 (81)
17 3j20_W 30S ribosomal protein S 28.9 40 0.0014 21.4 2.5 32 4-36 12-44 (63)
18 2jys_A Protease/reverse transc 27.5 14 0.00048 25.8 0.2 17 76-92 34-50 (107)
19 2k5c_A Uncharacterized protein 26.0 13 0.00045 25.3 -0.2 12 26-37 8-19 (95)
20 1u5k_A Hypothetical protein; O 24.5 37 0.0013 25.3 2.1 30 25-71 149-178 (244)
21 2jrp_A Putative cytoplasmic pr 22.6 23 0.00077 23.5 0.5 16 27-42 32-47 (81)
22 1joc_A EEA1, early endosomal a 21.1 62 0.0021 22.3 2.6 36 25-73 68-103 (125)
23 1wig_A KIAA1808 protein; LIM d 20.9 47 0.0016 20.1 1.7 14 25-38 4-17 (73)
24 2yw8_A RUN and FYVE domain-con 20.7 41 0.0014 21.4 1.4 37 24-73 17-53 (82)
No 1
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=100.00 E-value=2e-47 Score=278.76 Aligned_cols=96 Identities=34% Similarity=0.613 Sum_probs=91.3
Q ss_pred eeeeeCCCCceEEEEeeeCCCCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHhhHHHHhhhhhccc
Q psy3939 5 LPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIYCFFYSHCK 84 (123)
Q Consensus 5 ~~~vkTPGgrlv~~y~kK~~~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr~rI~raFL~ee~K 84 (123)
++++|||||+|||||.+|+++.|+|||||.+|+||+++||.++++|++++|+|||||||++||+||+|||++||||||||
T Consensus 20 ~r~vkTPGGrlV~~y~KK~~~~pkCg~Cg~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~RI~rAFLiEEqK 99 (121)
T 3u5e_g 20 IKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERIIRAFLIEEQK 99 (121)
T ss_dssp CCEEECTTSCEEECCBCCCCCCCBCTTTCCBCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHHHHHHHHHHHHHHHH
T ss_pred eEEeECCCCceEEEEeccCCCCCCCCCCCCccCCccCCcHHHHHhcccCCCCcccCCcccchHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhhHHHHh
Q psy3939 85 IKLPGIEKARSIERSR 100 (123)
Q Consensus 85 ivkkgVKakrp~ekkr 100 (123)
||+++++++...+++.
T Consensus 100 ivkkvlk~~~~~~k~~ 115 (121)
T 3u5e_g 100 IVKKVVKEQTEAAKKS 115 (121)
T ss_dssp HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988765543
No 2
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Probab=100.00 E-value=3e-46 Score=273.11 Aligned_cols=96 Identities=35% Similarity=0.649 Sum_probs=87.5
Q ss_pred eeeeeeCCCCceEEEEeeeCCCCCCcCCCC--CCCCCccccchhhHhhcccCccccccccCCccchhhHhhHHHHhhhhh
Q psy3939 4 YLPSVKTPGGRLVYHYLKKAGKVPRCGHCK--IKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIYCFFYS 81 (123)
Q Consensus 4 ~~~~vkTPGgrlv~~y~kK~~~~pkC~~c~--~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr~rI~raFL~e 81 (123)
.++++|||||+|||||.||+++.|+||||| .+|+||+++||.|+++|++++|+|||||||++||+||+|||++|||||
T Consensus 19 k~r~vkTPGGrlV~~y~KK~~~~pkCg~cg~~~~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~RI~rAFLiE 98 (123)
T 4a18_L 19 KVRKVKTPGGRLVAQYVKKVVNYTKCSEAGCNVALNGIAQVRPAEYATIARSAKTVSRVYGGELCHTCVRSRIIRAFLTE 98 (123)
T ss_dssp CEEEEECTTSCEEEEECCCCCCCCBCCSTTTCCBCSSSCCCCTTGGGTSCHHHHCCSSTTSSSCCHHHHHHHHHHHHHHH
T ss_pred eeEEEECCCCCEEEEEeccCCCCCcCCCCCCccccCCcCCCcHHHHHhccccCCCcccCCCccchHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhhhHHHH
Q psy3939 82 HCKIKLPGIEKARSIERS 99 (123)
Q Consensus 82 e~KivkkgVKakrp~ekk 99 (123)
|||||+++++++...++.
T Consensus 99 EqKivkkvlk~~~~~~k~ 116 (123)
T 4a18_L 99 EVKIVKRKMISKPKTDKK 116 (123)
T ss_dssp HHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999886654
No 3
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=100.00 E-value=7.4e-47 Score=275.14 Aligned_cols=93 Identities=40% Similarity=0.641 Sum_probs=90.0
Q ss_pred eeeeeCCCCceEEEEeeeCCCCCCcCCCCCCCCCccccchhhH--hhcccCccccccccCCccchhhHhhHHHHhhhhhc
Q psy3939 5 LPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIER--SRMSRRRKMVKRSYGGVLCHKCVKEKFIYCFFYSH 82 (123)
Q Consensus 5 ~~~vkTPGgrlv~~y~kK~~~~pkC~~c~~~L~Gi~~~rp~~~--~~l~k~~k~v~R~YGG~lC~~cvr~rI~raFL~ee 82 (123)
++++|||||+|||||.||+++.|+|||||.+|+||+++||.|+ ++|++++|+|||||||++||+||+|||++||||||
T Consensus 20 ~r~vkTPGGrlv~~y~KK~~~~pkC~~cg~~L~GI~~~Rp~e~~~~rlsK~~KtvsRaYGG~lC~~CVr~rI~rAFLiEE 99 (119)
T 3iz5_i 20 TRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPTEYKRPRLSRNRRTVNRPYGGVLSGPAVRERIIRAFLVEE 99 (119)
T ss_dssp SBCCCCSSCCCCBCCCSCCSSCCCSTTSSCCSSSCCSSCSSTTCCCCCCSCCCCCBCCSCCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCEEEEEeccCCCCCCCCCCCCccCCccCCCchhhhhhhccccCCCcccCCCccchHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred cccccccchhhhhHH
Q psy3939 83 CKIKLPGIEKARSIE 97 (123)
Q Consensus 83 ~KivkkgVKakrp~e 97 (123)
||||+++++++...+
T Consensus 100 qKivkkvlk~~~~~~ 114 (119)
T 3iz5_i 100 QKIVKKVLKIQKTKE 114 (119)
T ss_dssp HTTTTTSSCCCCCSC
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999987643
No 4
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.7e-34 Score=201.12 Aligned_cols=74 Identities=30% Similarity=0.617 Sum_probs=71.7
Q ss_pred eeeeeeCCCCceEEEEeeeCCCCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHhhHHHHhh
Q psy3939 4 YLPSVKTPGGRLVYHYLKKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIYCF 78 (123)
Q Consensus 4 ~~~~vkTPGgrlv~~y~kK~~~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr~rI~raF 78 (123)
.++++|||||+|||||+||+++.|+|||||.+|+||+++||.|+++|+|++|+|||||| ++||+||+|||++|-
T Consensus 11 k~r~vkTPGGrlv~~y~KK~~~~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr~rI~~~~ 84 (89)
T 3j21_d 11 RRKYVRTPGGRVVIHFERKKPKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMRKVMKEQI 84 (89)
T ss_dssp CEEEECCTTSCCEEEECCCCCCCCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCcEEEEEecccCCCCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999 999999999999874
No 5
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_g 4b6a_g 3izc_i 3izs_i
Probab=99.43 E-value=1e-14 Score=106.24 Aligned_cols=48 Identities=38% Similarity=0.690 Sum_probs=45.1
Q ss_pred CCccchhhHhhHHHHhhhhhccccccccchhhhhHHHHhcccCCCccccccCCccccccccC
Q psy3939 62 GGVLCHKCVKEKFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE 123 (123)
Q Consensus 62 GG~lC~~cvr~rI~raFL~ee~KivkkgVKakrp~ekkrl~k~~ktV~RayGG~lc~~cvr~ 123 (123)
.++.|+.|-. .|+||++.+|.++++||+++|||||||||++||+||+|
T Consensus 40 ~~pkCg~Cg~--------------~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~ 87 (121)
T 3u5e_g 40 TRPKCGDCGS--------------ALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKE 87 (121)
T ss_dssp CCCBCTTTCC--------------BCTTCCCCCGGGGGSSCGGGSCCSSTTTTTSCSHHHHH
T ss_pred CCCCCCCCCC--------------ccCCccCCcHHHHHhcccCCCCcccCCcccchHHHHHH
Confidence 4567999998 99999999999999999999999999999999999985
No 6
>3iz5_i 60S ribosomal protein L34 (L34E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_i
Probab=99.38 E-value=1.7e-14 Score=104.86 Aligned_cols=48 Identities=44% Similarity=0.699 Sum_probs=45.1
Q ss_pred CCccchhhHhhHHHHhhhhhccccccccchhhhhHHH--HhcccCCCccccccCCccccccccC
Q psy3939 62 GGVLCHKCVKEKFIYCFFYSHCKIKLPGIEKARSIER--SRMSRRRKMVKRSYGGVLCHKCVKE 123 (123)
Q Consensus 62 GG~lC~~cvr~rI~raFL~ee~KivkkgVKakrp~ek--krl~k~~ktV~RayGG~lc~~cvr~ 123 (123)
.++.|+.|-. .|+||++.+|.++ ++||+++|||||||||++||+||+|
T Consensus 40 ~~pkC~~cg~--------------~L~GI~~~Rp~e~~~~rlsK~~KtvsRaYGG~lC~~CVr~ 89 (119)
T 3iz5_i 40 SGPKCPVTGK--------------KIQGIPHLRPTEYKRPRLSRNRRTVNRPYGGVLSGPAVRE 89 (119)
T ss_dssp SCCCSTTSSC--------------CSSSCCSSCSSTTCCCCCCSCCCCCBCCSCCCCHHHHHHH
T ss_pred CCCCCCCCCC--------------ccCCccCCCchhhhhhhccccCCCcccCCCccchHHHHHH
Confidence 4567999998 9999999999999 9999999999999999999999985
No 7
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Probab=99.36 E-value=2.2e-14 Score=104.73 Aligned_cols=48 Identities=38% Similarity=0.695 Sum_probs=44.9
Q ss_pred CCccchhhH--hhHHHHhhhhhccccccccchhhhhHHHHhcccCCCccccccCCccccccccC
Q psy3939 62 GGVLCHKCV--KEKFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE 123 (123)
Q Consensus 62 GG~lC~~cv--r~rI~raFL~ee~KivkkgVKakrp~ekkrl~k~~ktV~RayGG~lc~~cvr~ 123 (123)
.++.|+.|- . .|+||++.+|.++++||+++|||||||||++||.||+|
T Consensus 40 ~~pkCg~cg~~~--------------~L~GI~~~RP~e~~rlsK~~KtvsRaYGG~lC~~CVr~ 89 (123)
T 4a18_L 40 NYTKCSEAGCNV--------------ALNGIAQVRPAEYATIARSAKTVSRVYGGELCHTCVRS 89 (123)
T ss_dssp CCCBCCSTTTCC--------------BCSSSCCCCTTGGGTSCHHHHCCSSTTSSSCCHHHHHH
T ss_pred CCCcCCCCCCcc--------------ccCCcCCCcHHHHHhccccCCCcccCCCccchHHHHHH
Confidence 356699998 8 99999999999999999999999999999999999985
No 8
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.26 E-value=1.6e-13 Score=95.25 Aligned_cols=47 Identities=26% Similarity=0.610 Sum_probs=44.1
Q ss_pred CCccchhhHhhHHHHhhhhhccccccccchhhhhHHHHhcccCCCccccccCCccccccccC
Q psy3939 62 GGVLCHKCVKEKFIYCFFYSHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE 123 (123)
Q Consensus 62 GG~lC~~cvr~rI~raFL~ee~KivkkgVKakrp~ekkrl~k~~ktV~RayGG~lc~~cvr~ 123 (123)
.++.|+.|-. .|+||++.+|.++++|+|++|||||||| ++||+||+|
T Consensus 32 ~~pkC~~cg~--------------~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr~ 78 (89)
T 3j21_d 32 KIAHCAMCGR--------------PLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMRK 78 (89)
T ss_dssp CCCBCSSSCC--------------BCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHHH
T ss_pred CCCCCCCCCC--------------ccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHHH
Confidence 4568999998 9999999999999999999999999999 999999985
No 9
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=61.96 E-value=6.2 Score=25.52 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=29.2
Q ss_pred CceeeeeeeCCC-CceEEEEeeeCCCCCCcCCCCCCC
Q psy3939 1 MVTYLPSVKTPG-GRLVYHYLKKAGKVPRCGHCKIKL 36 (123)
Q Consensus 1 ~~~~~~~vkTPG-grlv~~y~kK~~~~pkC~~c~~~L 36 (123)
|-.|...||=|| +.+.+.|- ...+...|..||..|
T Consensus 1 mnS~Fm~VKCp~C~niq~VFS-hA~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 1 MHSRFVKVKCPDCEHEQVIFD-HPSTIVKCIICGRTV 36 (66)
T ss_dssp CCCCEEEEECTTTCCEEEEES-SCSSCEECSSSCCEE
T ss_pred CCceeEEEECCCCCCceEEEe-cCceEEEcccCCCEE
Confidence 556888999999 88888887 667777899999866
No 10
>2vqe_N 30S ribosomal protein S14 type Z; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: g.39.1.7 PDB: 1gix_Q* 1hnw_N* 1hnx_N* 1hnz_N* 1hr0_N 1ibk_N* 1ibl_N* 1ibm_N 1jgo_Q* 1jgp_Q* 1jgq_Q* 1ml5_Q* 1xmo_N* 1xmq_N* 1xnq_N* 1xnr_N* 1yl4_Q 2b64_N* 2b9m_N* 2b9o_N* ...
Probab=37.99 E-value=26 Score=21.92 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=16.6
Q ss_pred cccccccCCccchhhHhhHHHHhh
Q psy3939 55 KMVKRSYGGVLCHKCVKEKFIYCF 78 (123)
Q Consensus 55 k~v~R~YGG~lC~~cvr~rI~raF 78 (123)
+-+-|.|| +|-.|.+|.-..-.
T Consensus 31 rg~iRkfg--lcR~~FRe~A~~g~ 52 (61)
T 2vqe_N 31 RSVYRFFG--LCRICLRELAHKGQ 52 (61)
T ss_dssp TTCCTTTS--SCHHHHHHHHHHTC
T ss_pred ceeeccCc--eeHHHHHHHHhCCc
Confidence 46778898 99999997655443
No 11
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=37.29 E-value=8.2 Score=25.39 Aligned_cols=42 Identities=26% Similarity=0.638 Sum_probs=31.2
Q ss_pred CCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHhhHHHHhhh
Q psy3939 25 KVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIYCFF 79 (123)
Q Consensus 25 ~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr~rI~raFL 79 (123)
....|..|+.+..=+ ..|+--|.=|+.+|..|...++...++
T Consensus 19 ~~~~C~~C~~~F~~~-------------~RrhhCr~CG~v~C~~Cs~~~~~l~~~ 60 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFT-------------KRRHHCRACGKVFCGVCCNRKCKLQYL 60 (90)
T ss_dssp GCCBCTTTCCBCCSS-------------SCCEECTTTCCEECGGGSCEEEEETTT
T ss_pred cCCcCcCCCCcccch-------------hhCccccCCCCEECCcccCCeeecCCC
Confidence 345699999876532 347889999999999999876654444
No 12
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=36.80 E-value=49 Score=22.07 Aligned_cols=32 Identities=28% Similarity=0.518 Sum_probs=25.8
Q ss_pred eeeeeeCCC-CceEEEEeeeCCCCCCcCCCCCCC
Q psy3939 4 YLPSVKTPG-GRLVYHYLKKAGKVPRCGHCKIKL 36 (123)
Q Consensus 4 ~~~~vkTPG-grlv~~y~kK~~~~pkC~~c~~~L 36 (123)
|...|+=|| +.+.+.|- ...+...|..||..|
T Consensus 31 ~Fm~VkCp~C~~~q~VFS-ha~t~V~C~~Cg~~L 63 (82)
T 3u5c_b 31 YFLDVKCPGCLNITTVFS-HAQTAVTCESCSTIL 63 (82)
T ss_dssp CEEEEECTTSCSCEEEES-BCSSCCCCSSSCCCC
T ss_pred cEEEEECCCCCCeeEEEe-cCCeEEEccccCCEE
Confidence 667788899 88888887 567777899999866
No 13
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=33.93 E-value=12 Score=21.03 Aligned_cols=18 Identities=39% Similarity=0.707 Sum_probs=13.0
Q ss_pred CccccccCCccccccccC
Q psy3939 106 KMVKRSYGGVLCHKCVKE 123 (123)
Q Consensus 106 ktV~RayGG~lc~~cvr~ 123 (123)
+-++-.-|-|-||+||.|
T Consensus 10 rcpnpregdwcchkcvpe 27 (36)
T 4b2u_A 10 RCPNPREGDWCCHKCVPE 27 (36)
T ss_dssp BCCCGGGCCSSSSEEEEE
T ss_pred cCcCCCccCeeeeccccc
Confidence 334455688999999964
No 14
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=31.65 E-value=1.1e+02 Score=19.94 Aligned_cols=65 Identities=11% Similarity=0.125 Sum_probs=47.2
Q ss_pred eeCCC-CceEEEEeeeCCCCCCcCCCCCCCCC--ccccchhhHhhcccCccccccccCCccchhhHhh
Q psy3939 8 VKTPG-GRLVYHYLKKAGKVPRCGHCKIKLPG--IEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKE 72 (123)
Q Consensus 8 vkTPG-grlv~~y~kK~~~~pkC~~c~~~L~G--i~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr~ 72 (123)
+--|+ |..--....+-...|.|+.|+.++.. +..+-..++..+-...+.+-=-|..+-|+.|...
T Consensus 6 ~~c~~c~~~n~~p~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~ 73 (148)
T 3p2a_A 6 TVCTACMATNRLPEERIDDGAKCGRCGHSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSF 73 (148)
T ss_dssp EECTTTCCEEEEESSCSCSCCBCTTTCCBTTCCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHH
T ss_pred EECcccccccCCCCcccccCCcchhcCCccccCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHH
Confidence 33466 66656667778888999999998754 4455566676665666666667889999999964
No 15
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=30.14 E-value=70 Score=21.48 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=25.6
Q ss_pred eeeeeeCCC-CceEEEEeeeCCCCCCcCCCCCCCC
Q psy3939 4 YLPSVKTPG-GRLVYHYLKKAGKVPRCGHCKIKLP 37 (123)
Q Consensus 4 ~~~~vkTPG-grlv~~y~kK~~~~pkC~~c~~~L~ 37 (123)
|...|+=|| +.+.+.|- ...+...|..||..|-
T Consensus 33 ~Fm~VkCp~C~~~~~VFS-hA~t~V~C~~CgtvL~ 66 (86)
T 3iz6_X 33 FFMDVKCQGCFNITTVFS-HSQTVVVCPGCQTVLC 66 (86)
T ss_dssp CEEEEECTTTCCEEEEET-TCSSCCCCSSSCCCCS
T ss_pred cEeEEECCCCCCeeEEEe-cCCcEEEccCCCCEee
Confidence 566788888 88888887 5677778999998663
No 16
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=29.10 E-value=34 Score=22.81 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=24.5
Q ss_pred eeeeeeCCC-CceEEEEeeeCCCCCCcCCCCCCC
Q psy3939 4 YLPSVKTPG-GRLVYHYLKKAGKVPRCGHCKIKL 36 (123)
Q Consensus 4 ~~~~vkTPG-grlv~~y~kK~~~~pkC~~c~~~L 36 (123)
|...|+=|| +.+.+.|- ...+...|..||..|
T Consensus 29 ~Fm~VkCp~C~n~q~VFS-hA~t~V~C~~Cg~~L 61 (81)
T 2xzm_6 29 YFMDVKCAQCQNIQMIFS-NAQSTIICEKCSAIL 61 (81)
T ss_dssp CEEEEECSSSCCEEEEET-TCSSCEECSSSCCEE
T ss_pred cEEEeECCCCCCeeEEEe-cCccEEEccCCCCEE
Confidence 567788888 78888777 566677799998765
No 17
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.94 E-value=40 Score=21.45 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=24.3
Q ss_pred eeeeeeCCC-CceEEEEeeeCCCCCCcCCCCCCC
Q psy3939 4 YLPSVKTPG-GRLVYHYLKKAGKVPRCGHCKIKL 36 (123)
Q Consensus 4 ~~~~vkTPG-grlv~~y~kK~~~~pkC~~c~~~L 36 (123)
|...||=|| +.+.+.|- ...+.-.|..||..|
T Consensus 12 ~Fm~VkCp~C~~~q~VFS-ha~t~V~C~~Cgt~L 44 (63)
T 3j20_W 12 RFLRVKCIDCGNEQIVFS-HPATKVRCLICGATL 44 (63)
T ss_dssp CEEEEECSSSCCEEEEES-SCSSCEECSSSCCEE
T ss_pred cEEEEECCCCCCeeEEEe-cCCeEEEccCcCCEE
Confidence 567788888 77777776 566777799998754
No 18
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=27.48 E-value=14 Score=25.79 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=13.8
Q ss_pred Hhhhhhccccccccchh
Q psy3939 76 YCFFYSHCKIKLPGIEK 92 (123)
Q Consensus 76 raFL~ee~KivkkgVKa 92 (123)
.+||+||+.|-...|+.
T Consensus 34 ~~fL~~E~PI~~~~I~T 50 (107)
T 2jys_A 34 EAFLEDERPIQTMLIKT 50 (107)
T ss_dssp GGGTTTCCCSEEEEEEC
T ss_pred hHHhcccccccceEEEE
Confidence 58999999997766654
No 19
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=26.02 E-value=13 Score=25.34 Aligned_cols=12 Identities=25% Similarity=0.659 Sum_probs=9.4
Q ss_pred CCCcCCCCCCCC
Q psy3939 26 VPRCGHCKIKLP 37 (123)
Q Consensus 26 ~pkC~~c~~~L~ 37 (123)
-++|+.||.+|.
T Consensus 8 ~~~~PlCG~~L~ 19 (95)
T 2k5c_A 8 MAKCPICGSPLK 19 (95)
T ss_dssp CEECSSSCCEEC
T ss_pred cccCCcCCCccC
Confidence 457999998875
No 20
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=24.54 E-value=37 Score=25.27 Aligned_cols=30 Identities=30% Similarity=0.630 Sum_probs=21.3
Q ss_pred CCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHh
Q psy3939 25 KVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVK 71 (123)
Q Consensus 25 ~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr 71 (123)
....|+.||.+ +.. ..+-..||.+|..|..
T Consensus 149 ~l~~C~~cg~~--~~~---------------~fs~~~Gg~~c~~~~~ 178 (244)
T 1u5k_A 149 QTARCARCGAP--DPE---------------HPDPLGGQLLCSKCAA 178 (244)
T ss_dssp CCSBCTTTCCB--SCC---------------EECTTTSSEECTTTCS
T ss_pred CcCccccCCCC--CCC---------------cEecccCEEECcccCC
Confidence 34579999987 211 4556789999999854
No 21
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=22.63 E-value=23 Score=23.54 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=13.0
Q ss_pred CCcCCCCCCCCCcccc
Q psy3939 27 PRCGHCKIKLPGIEKA 42 (123)
Q Consensus 27 pkC~~c~~~L~Gi~~~ 42 (123)
+-|++||.+|+-.++-
T Consensus 32 afCPeCgq~Le~lkAC 47 (81)
T 2jrp_A 32 ALCPDCRQPLQVLKAC 47 (81)
T ss_dssp EECSSSCSCCCEEEET
T ss_pred ccCcchhhHHHHHHhc
Confidence 4799999999887653
No 22
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.12 E-value=62 Score=22.30 Aligned_cols=36 Identities=22% Similarity=0.532 Sum_probs=28.1
Q ss_pred CCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHhhH
Q psy3939 25 KVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEK 73 (123)
Q Consensus 25 ~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr~r 73 (123)
....|..|+.+..=+ ..|+--|.=|..+|++|...+
T Consensus 68 ~~~~C~~C~~~Fs~~-------------~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 68 EVQNCMACGKGFSVT-------------VRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GCCBCTTTCCBCCSS-------------SCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCcCcCCccccc-------------cccccCCCCCeEEChHHhCCc
Confidence 456799999876522 357889999999999999744
No 23
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.90 E-value=47 Score=20.08 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=11.4
Q ss_pred CCCCcCCCCCCCCC
Q psy3939 25 KVPRCGHCKIKLPG 38 (123)
Q Consensus 25 ~~pkC~~c~~~L~G 38 (123)
-.++|+.|+.++.|
T Consensus 4 ~~~~C~~C~~~I~~ 17 (73)
T 1wig_A 4 GSSGCDSCEKYITG 17 (73)
T ss_dssp SCCSCSSSCCCCSS
T ss_pred CcCCcccCCCEecC
Confidence 36789999998877
No 24
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=20.66 E-value=41 Score=21.41 Aligned_cols=37 Identities=24% Similarity=0.623 Sum_probs=28.7
Q ss_pred CCCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHhhH
Q psy3939 24 GKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEK 73 (123)
Q Consensus 24 ~~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr~r 73 (123)
...+.|..|+.+..=+ ..|+--|.=|..+|++|...+
T Consensus 17 ~~~~~C~~C~~~Fs~~-------------~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSIS-------------RRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTT-------------BCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCc-------------cccccCCCCCCEEChHHhCCe
Confidence 3556799999886522 347889999999999999754
Done!