Query psy3939
Match_columns 123
No_of_seqs 161 out of 404
Neff 4.9
Searched_HMMs 13730
Date Fri Aug 16 21:12:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3939.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3939hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x3ha1 g.39.1.3 (A:8-42) Leup 72.4 0.79 5.8E-05 24.6 1.5 13 26-38 8-20 (35)
2 d2dloa2 g.39.1.3 (A:43-75) Thy 62.3 1.7 0.00012 23.3 1.5 14 28-41 1-14 (33)
3 d1qxfa_ g.41.8.4 (A:) Ribosoma 57.6 4 0.00029 24.2 2.8 35 1-36 1-36 (58)
4 d2dara2 g.39.1.3 (A:8-52) PDZ 55.6 3 0.00022 23.7 1.9 15 24-38 16-30 (45)
5 d2cora2 g.39.1.3 (A:8-42) Pinc 48.0 2.2 0.00016 23.1 0.4 24 59-89 4-27 (35)
6 d2dj7a1 g.39.1.3 (A:44-74) Act 45.6 4.2 0.0003 21.4 1.3 11 28-38 1-11 (31)
7 d1u5sb1 g.39.1.3 (B:72-102) Pi 39.5 4.2 0.00031 21.4 0.7 14 25-38 4-17 (31)
8 d1j2oa1 g.39.1.3 (A:1-30) Rhom 34.4 7.7 0.00056 20.1 1.2 13 24-36 1-13 (30)
9 d1dcqa2 g.45.1.1 (A:247-368) P 30.5 9.2 0.00067 24.9 1.4 34 21-71 10-43 (122)
10 d1u5ka2 g.45.1.2 (A:81-237) Re 28.4 15 0.0011 24.0 2.2 31 24-71 68-98 (157)
11 d1x4la1 g.39.1.3 (A:8-36) Four 25.9 13 0.00092 19.1 1.1 14 29-42 1-14 (29)
12 d1joca1 g.50.1.1 (A:1348-1411) 20.5 35 0.0025 19.4 2.6 36 25-73 7-42 (64)
13 d1rutx1 g.39.1.3 (X:19-48) LIM 20.3 22 0.0016 18.2 1.4 12 26-37 2-13 (30)
14 d1wfka_ g.50.1.1 (A:) Zinc fin 20.1 11 0.00082 23.2 0.2 41 24-77 7-47 (88)
No 1
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.35 E-value=0.79 Score=24.64 Aligned_cols=13 Identities=31% Similarity=0.871 Sum_probs=11.9
Q ss_pred CCCcCCCCCCCCC
Q psy3939 26 VPRCGHCKIKLPG 38 (123)
Q Consensus 26 ~pkC~~c~~~L~G 38 (123)
+|+|+.|+.++.|
T Consensus 8 apkC~~C~~~I~g 20 (35)
T d1x3ha1 8 SPKCGGCNRPVLE 20 (35)
T ss_dssp SCBCTTTCCBCCS
T ss_pred ChhhhhcCCcccc
Confidence 6899999999987
No 2
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.30 E-value=1.7 Score=23.34 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=12.1
Q ss_pred CcCCCCCCCCCccc
Q psy3939 28 RCGHCKIKLPGIEK 41 (123)
Q Consensus 28 kC~~c~~~L~Gi~~ 41 (123)
.|..|+..|.|||=
T Consensus 1 tCvvC~~~LDGvPF 14 (33)
T d2dloa2 1 TCVVCHRGLDGIPF 14 (33)
T ss_dssp BCSSSCCBCTTSCE
T ss_pred CeeEcCcccCCCcE
Confidence 38899999999983
No 3
>d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=57.60 E-value=4 Score=24.25 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=28.5
Q ss_pred CceeeeeeeCCC-CceEEEEeeeCCCCCCcCCCCCCC
Q psy3939 1 MVTYLPSVKTPG-GRLVYHYLKKAGKVPRCGHCKIKL 36 (123)
Q Consensus 1 ~~~~~~~vkTPG-grlv~~y~kK~~~~pkC~~c~~~L 36 (123)
|-.|...|+=|| +...+.|- ...+...|..||..|
T Consensus 1 mnS~F~~VkC~~C~n~~ivFs-ha~t~V~C~~Cg~~L 36 (58)
T d1qxfa_ 1 MHSRFVKVKCPDCEHEQVIFD-HPSTIVKCIICGRTV 36 (58)
T ss_dssp CCCCEEEEECTTTCCEEEEES-SCSSCEECSSSCCEE
T ss_pred CCceeEEeECCCCCCeEEEEe-cCceEEEccccCCEE
Confidence 567888999999 88888887 567777799999755
No 4
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.57 E-value=3 Score=23.69 Aligned_cols=15 Identities=33% Similarity=0.948 Sum_probs=12.9
Q ss_pred CCCCCcCCCCCCCCC
Q psy3939 24 GKVPRCGHCKIKLPG 38 (123)
Q Consensus 24 ~~~pkC~~c~~~L~G 38 (123)
...|.|+.|++++.|
T Consensus 16 ~r~P~C~~C~~pI~g 30 (45)
T d2dara2 16 KRTPMCAHCNQVIRG 30 (45)
T ss_dssp TCCCBBSSSCCBCCS
T ss_pred CCCeeccccCCcccC
Confidence 456899999999988
No 5
>d2cora2 g.39.1.3 (A:8-42) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.97 E-value=2.2 Score=23.08 Aligned_cols=24 Identities=21% Similarity=0.528 Sum_probs=19.1
Q ss_pred cccCCccchhhHhhHHHHhhhhhcccccccc
Q psy3939 59 RSYGGVLCHKCVKEKFIYCFFYSHCKIKLPG 89 (123)
Q Consensus 59 R~YGG~lC~~cvr~rI~raFL~ee~Kivkkg 89 (123)
+.-|-+.|.+|.. +||||.+.-++
T Consensus 4 ~glGk~vC~KCh~-------iIdd~pL~Fr~ 27 (35)
T d2cora2 4 RGLGKYICQKCHA-------IIDEQPLIFKN 27 (35)
T ss_dssp CCCCCCBCTTTCC-------BCCSCCCCCSS
T ss_pred cchhhHHHHHHHh-------hhhcCcceecC
Confidence 4568899999998 78888877654
No 6
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.61 E-value=4.2 Score=21.39 Aligned_cols=11 Identities=36% Similarity=1.096 Sum_probs=10.0
Q ss_pred CcCCCCCCCCC
Q psy3939 28 RCGHCKIKLPG 38 (123)
Q Consensus 28 kC~~c~~~L~G 38 (123)
+|-.|+..|+|
T Consensus 1 kC~~C~~vL~g 11 (31)
T d2dj7a1 1 KCQTCSVILTG 11 (31)
T ss_dssp BCSSSCCBCSS
T ss_pred CccccCccccc
Confidence 68999999998
No 7
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.52 E-value=4.2 Score=21.39 Aligned_cols=14 Identities=43% Similarity=1.068 Sum_probs=12.1
Q ss_pred CCCCcCCCCCCCCC
Q psy3939 25 KVPRCGHCKIKLPG 38 (123)
Q Consensus 25 ~~pkC~~c~~~L~G 38 (123)
..|.|+.|.+|+-|
T Consensus 4 g~p~C~~C~~PI~~ 17 (31)
T d1u5sb1 4 GVPICGACRRPIEG 17 (31)
T ss_dssp CCCEETTTTEECCS
T ss_pred CCcchhhcCCchhh
Confidence 46899999999887
No 8
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.40 E-value=7.7 Score=20.14 Aligned_cols=13 Identities=31% Similarity=0.958 Sum_probs=9.5
Q ss_pred CCCCCcCCCCCCC
Q psy3939 24 GKVPRCGHCKIKL 36 (123)
Q Consensus 24 ~~~pkC~~c~~~L 36 (123)
++.+.|+-|+.++
T Consensus 1 G~~~~CaGC~~~I 13 (30)
T d1j2oa1 1 GSLLTCGGCQQNI 13 (30)
T ss_dssp CCCBCBSSSCSCB
T ss_pred CCCcccCCCCCcc
Confidence 3567788888775
No 9
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.49 E-value=9.2 Score=24.85 Aligned_cols=34 Identities=18% Similarity=0.424 Sum_probs=24.2
Q ss_pred eeCCCCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHh
Q psy3939 21 KKAGKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVK 71 (123)
Q Consensus 21 kK~~~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr 71 (123)
.+.+..-.|+|||.+-+ .-+|=.||=.+|..|-.
T Consensus 10 ~~~p~N~~CaDC~~~~p-----------------~w~s~n~GvfvC~~Csg 43 (122)
T d1dcqa2 10 QRMTGNDVCCDCGAPDP-----------------TWLSTNLGILTCIECSG 43 (122)
T ss_dssp HHSTTTTBCTTTCCBSC-----------------CEEETTTTEEECHHHHH
T ss_pred HhCCCCCccCCCCCCCC-----------------CeEEecCCEEEchhhhH
Confidence 34566678999985421 24566799999999965
No 10
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=28.44 E-value=15 Score=24.00 Aligned_cols=31 Identities=29% Similarity=0.611 Sum_probs=20.1
Q ss_pred CCCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHh
Q psy3939 24 GKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVK 71 (123)
Q Consensus 24 ~~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr 71 (123)
+....|..||.+-+- ..+-.-||.+|++|..
T Consensus 68 P~l~~C~~cg~~~~~-----------------~f~~~~Gg~~C~~c~~ 98 (157)
T d1u5ka2 68 PQTARCARCGAPDPE-----------------HPDPLGGQLLCSKCAA 98 (157)
T ss_dssp CCCSBCTTTCCBSCC-----------------EECTTTSSEECTTTCS
T ss_pred CChhhHhcCCCCCCC-----------------cccccCCeeECCCCCC
Confidence 445569999975211 1233459999999964
No 11
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.89 E-value=13 Score=19.10 Aligned_cols=14 Identities=21% Similarity=0.717 Sum_probs=11.3
Q ss_pred cCCCCCCCCCcccc
Q psy3939 29 CGHCKIKLPGIEKA 42 (123)
Q Consensus 29 C~~c~~~L~Gi~~~ 42 (123)
|+.|.+|+-|+--.
T Consensus 1 C~~C~kPItg~gg~ 14 (29)
T d1x4la1 1 CAGCTNPISGLGGT 14 (29)
T ss_dssp BTTTTBCCCCSSSC
T ss_pred CCccCCcccccCCc
Confidence 88899999887643
No 12
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.50 E-value=35 Score=19.36 Aligned_cols=36 Identities=22% Similarity=0.533 Sum_probs=27.8
Q ss_pred CCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHhhH
Q psy3939 25 KVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEK 73 (123)
Q Consensus 25 ~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr~r 73 (123)
+...|..|+.+..=+. .|.--|.=|..+|++|...+
T Consensus 7 ~~~~C~~C~~~F~~~~-------------rrHHCR~CG~v~C~~Cs~~~ 42 (64)
T d1joca1 7 EVQNCMACGKGFSVTV-------------RRHHCRQCGNIFCAECSAKN 42 (64)
T ss_dssp GCCBCTTTCCBCCSSS-------------CCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCcCCcccCCc-------------cccchhhhCCeecccccCCc
Confidence 4567999998875322 36889999999999998743
No 13
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.35 E-value=22 Score=18.19 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=8.0
Q ss_pred CCCcCCCCCCCC
Q psy3939 26 VPRCGHCKIKLP 37 (123)
Q Consensus 26 ~pkC~~c~~~L~ 37 (123)
.-.|+.||.++.
T Consensus 2 ~~~CaGC~~~I~ 13 (30)
T d1rutx1 2 WKRCAGCGGKIA 13 (30)
T ss_dssp CCBBTTTCCBCC
T ss_pred ccccCCCCCccc
Confidence 346888887753
No 14
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.06 E-value=11 Score=23.23 Aligned_cols=41 Identities=20% Similarity=0.470 Sum_probs=30.7
Q ss_pred CCCCCcCCCCCCCCCccccchhhHhhcccCccccccccCCccchhhHhhHHHHh
Q psy3939 24 GKVPRCGHCKIKLPGIEKARSIERSRMSRRRKMVKRSYGGVLCHKCVKEKFIYC 77 (123)
Q Consensus 24 ~~~pkC~~c~~~L~Gi~~~rp~~~~~l~k~~k~v~R~YGG~lC~~cvr~rI~ra 77 (123)
+...+|-.|+.+..=+. .|+--|.=|...|++|...++...
T Consensus 7 ~~~s~C~~C~~~Fs~~~-------------rrhhCr~CG~vfC~~Cs~~~~~lp 47 (88)
T d1wfka_ 7 GMESRCYGCAVKFTLFK-------------KEYGCKNCGRAFCNGCLSFSALVP 47 (88)
T ss_dssp CCCSBCTTTCCBCCSSS-------------CEEECSSSCCEEETTTSCEEEEET
T ss_pred cccCcCcccCchhcccc-------------ccccccccChhhChHHhCCccccC
Confidence 45677999998874322 368889999999999997655443
Done!