BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy394
(66 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 48.5 bits (114), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 9 EFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
EF +MNGF+ + +G + P + P VDWR KG VTP+K+QGQC
Sbjct: 12 EFRQVMNGFQ-------NRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQC 60
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 9 EFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
EF +MNGF+ + +G + P + P VDWR KG VTP+K+QGQC
Sbjct: 70 EFRQVMNGFQ-------NRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQC 118
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 35 YIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
+I D V LPE VDWR KGAVTP++ QG C
Sbjct: 99 FINEDIVNLPENVDWRKKGAVTPVRHQGSC 128
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 46.2 bits (108), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 20/22 (90%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LPE++DWR KGAVTP+K+QG C
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSC 22
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 21/22 (95%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LPE++DWR KGAVTP+K+QG+C
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKC 22
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 45.1 bits (105), Expect = 9e-06, Method: Composition-based stats.
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 40 NVKLPEEVDWRNKGAVTPIKDQGQC 64
+V +PE VDWR KGAVTP+K+QG C
Sbjct: 149 DVNIPEYVDWRQKGAVTPVKNQGSC 173
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 45.1 bits (105), Expect = 9e-06, Method: Composition-based stats.
Identities = 17/21 (80%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR KGAVTP+KDQGQC
Sbjct: 2 PAAVDWREKGAVTPVKDQGQC 22
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 9 EFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
EF +MNG L + +G + P + P VDWR KG VTP+K+QGQC
Sbjct: 66 EFRQVMNG-------LQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQC 114
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent
Binding Mode Of A Common Sequence Of Endogenous Thiol
Protease Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design
Of Cathepsin K Inhibitors. Crystal Structures Of Two
Papain Inhibitor Complexes Demonstrate Binding To
S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design
Of Cathepsin K Inhibitors. Crystal Structures Of Two
Papain Inhibitor Complexes Demonstrate Binding To
S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
+PE VDWR KGAVTP+K+QG C
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSC 22
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
+PE VDWR KGAVTP+K+QG C
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSC 22
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
+PE VDWR KGAVTP+K+QG C
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSC 22
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
+PE VDWR KGAVTP+K+QG C
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSC 22
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
+PE VDWR KGAVTP+K+QG C
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSC 22
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/21 (76%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
PE VDWR KGAVTP+K+QG C
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSC 22
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/22 (77%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LPE VDWR KGAVTP+K QG C
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYC 22
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LPE VDWR KGAV P+K+QG+C
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKC 22
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LPE VDWR KGAVTP++ QG C
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSC 22
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LPE VDWR KGAVTP++ QG C
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSC 22
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
+P VDWR KGAVT +KDQGQC
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQC 23
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP VDWR KGAVT +KDQG+C
Sbjct: 4 LPPSVDWRQKGAVTGVKDQGKC 25
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR KG VTP+K+QGQC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQC 22
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR KG VTP+K+QGQC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQC 22
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR KG VTP+K+QGQC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQC 22
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR KG VTP+K+QGQC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQC 22
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P+ +DWR KGAVTP+K+QG C
Sbjct: 2 PQSIDWRAKGAVTPVKNQGAC 22
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
In Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
In Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR KG VTP+K+QGQC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQC 22
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR KG VTP+K+QGQC
Sbjct: 3 PRSVDWREKGYVTPVKNQGQC 23
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of
Cathepsin L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of
Cathepsin L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR KG VTP+K+QGQC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQC 22
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR KG VTP+K+QGQC
Sbjct: 3 PRSVDWREKGYVTPVKNQGQC 23
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR+ GAV IKDQGQC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQC 22
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR+ GAV IKDQGQC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQC 22
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR KG VTP+K+Q QC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQC 22
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR KG VTP+K+Q QC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQC 22
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 23 LLGTERV----EEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
L+ + RV + +TY + N LP+ VDWR KG VT +K QG C
Sbjct: 75 LMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSC 120
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR +GAVT +KDQGQC
Sbjct: 2 PAAVDWRARGAVTAVKDQGQC 22
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR +GAVT +KDQGQC
Sbjct: 2 PAAVDWRARGAVTAVKDQGQC 22
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To
The Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To
The Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR +GAVT +KDQGQC
Sbjct: 2 PAAVDWRARGAVTAVKDQGQC 22
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non- Covalently Bound To A Hydroxymethyl Ketone
Inhibitor (Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone
Inhibitor (I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A
Purine Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR +GAVT +KDQGQC
Sbjct: 2 PAAVDWRARGAVTAVKDQGQC 22
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
+P +DWR KGAVTP+++QG C
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGC 22
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 40.0 bits (92), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
PE +DWR KGAVTP+K+Q C
Sbjct: 2 PESIDWREKGAVTPVKNQNPC 22
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P +DWR KGAVT +KDQG C
Sbjct: 2 PASIDWRKKGAVTSVKDQGAC 22
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR KG VTP+K+QGQC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQC 22
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR KG VTP+K+QGQC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQC 22
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 26 TERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
++ + GV Y A +N +P+++DWR G VT +KDQG C
Sbjct: 76 SDILSHGVPYEA-NNRAVPDKIDWRESGYVTEVKDQGNC 113
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With The Covalent Inhibitor
Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With The Covalent Inhibitor
Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With The Covalent Inhibitor
Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 42 KLPEEVDWRNKGAVTPIKDQGQC 64
+ P+ VD+R KG VTP+K+QGQC
Sbjct: 2 RAPDSVDYRKKGYVTPVKNQGQC 24
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In
Complex With Its Propeptide
Length = 224
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 42 KLPEEVDWRNKGAVTPIKDQGQC 64
+LP VDWR++G VTP+KDQ C
Sbjct: 6 ELPAGVDWRSRGCVTPVKDQRDC 28
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P+ +D+R KG VTP+K+QGQC
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQC 22
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P E DWR+KGAVT +KDQG C
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMC 22
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Azepanone
Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Azepanone
Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Azepanone
Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Azepanone
Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With
7-Methyl- Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With
7-Methyl- Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Symmetric
Diacylaminomethyl Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Propanone
Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Pyrrolidinone
Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human
Cathepsin K In Complex With A Covalent Pyrrolidinone
Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin
Sulfate Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective
2-Cyano-Pyrimidine Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P+ VD+R KG VTP+K+QGQC
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQC 22
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P+ VD+R KG VTP+K+QGQC
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQC 21
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 38.5 bits (88), Expect = 9e-04, Method: Composition-based stats.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P+ VD+R KG VTP+K+QGQC
Sbjct: 2 PDSVDYREKGYVTPVKNQGQC 22
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 9 EFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
E V M G K L R + YI + P+ VD+R KG VTP+K+QGQC
Sbjct: 70 EVVQKMTGLKVP---LSHSRSND-TLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQC 121
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ +DWR GAV P+K+QG C
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGC 24
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P+ +D+R KG VTP+K+QGQC
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQC 22
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 40 NVKLPEEVDWRNKGAVTPIKDQGQC 64
+V+ P DWR++G V+P+K+QG C
Sbjct: 113 SVRYPASFDWRDQGMVSPVKNQGSC 137
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 40 NVKLPEEVDWRNKGAVTPIKDQGQC 64
N LP+ VDWR KG VT +K QG C
Sbjct: 1 NRILPDSVDWREKGCVTEVKYQGSC 25
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR KG VT +K QG C
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSC 23
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes
As P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes
As P1 Binding Elements
Length = 222
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR KG VT +K QG C
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSC 24
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor
Cra- 14013
Length = 217
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR KG VT +K QG C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSC 22
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin
S
Length = 217
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR KG VT +K QG C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSC 22
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR KG VT +K QG C
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSC 23
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR KG VT +K QG C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSC 22
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease
Ervatamin B: Insight Into The Structural Basis Of Its
Stability And Substrate Specificity
Length = 215
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP VDWR+KGAV IK+Q QC
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQC 22
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR KG VT +K QG C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSC 22
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR KG VT +K QG C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSC 22
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR KG VT +K QG C
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSC 23
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor
Cra- 14009
Length = 217
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR KG VT +K QG C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSC 22
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR KG VT +K QG C
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSC 22
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of
Actinidin At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP VDWR+ GAV IK QG+C
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGEC 22
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP VDWR+ GAV IK QG+C
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGEC 22
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 45 EEVDWRNKGAVTPIKDQGQC 64
+ VD+R KG VTP+K+QGQC
Sbjct: 1 DSVDYRKKGYVTPVKNQGQC 20
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 32.7 bits (73), Expect = 0.048, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
PE DW KG +T +K QGQC
Sbjct: 3 PESWDWSKKGVITKVKFQGQC 23
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 32.7 bits (73), Expect = 0.058, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 10/36 (27%)
Query: 38 PDNVKLP---------EEVDWRNKGAVTPIKDQGQC 64
P+N+++P VDWR+ AV+ +KDQGQC
Sbjct: 102 PENLRMPYVSSKKPLAASVDWRSN-AVSEVKDQGQC 136
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 32.0 bits (71), Expect = 0.079, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 30 EEGVTYIAPDNVKLPE-EVDWRNKGAVTPIKDQGQC 64
E+ + P + KL DWR G VTP+KDQ C
Sbjct: 6 EDVIKKYKPADAKLDRIAYDWRLHGGVTPVKDQALC 41
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At
2.1 Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin
H: N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin
H: N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin
H: N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin
H: N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin
H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin
H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin
H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin
H
Length = 220
Score = 32.0 bits (71), Expect = 0.093, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 44 PEEVDWRNKGA-VTPIKDQGQC 64
P +DWR KG V+P+K+QG C
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSC 23
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 39 DNVKLPEEVDWRNKGAVTPIKDQGQC 64
++V +P E+D R+ VTPI+ QG C
Sbjct: 7 NSVNVPSELDLRSLRTVTPIRMQGGC 32
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 48 DWRNKGAVTPIKDQGQC 64
DWR VTP+KDQ C
Sbjct: 23 DWRLHSGVTPVKDQKNC 39
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 28.9 bits (63), Expect = 0.85, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 48 DWRNKGAVTPIKDQGQC 64
DWR VTP+KDQ C
Sbjct: 22 DWRLHSGVTPVKDQKNC 38
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 40 NVKLPEEVDWRNKGAVTPIKDQGQC 64
N P E+D R VTPI+ QG C
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGC 31
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 40 NVKLPEEVDWRNKGAVTPIKDQGQC 64
N P E+D R VTPI+ QG C
Sbjct: 87 NGNAPAEIDLRQMRTVTPIRMQGGC 111
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 23 LLGTERVEEGVTYIAPDNVKLPEEVD----WRNKGAVTPIKDQGQC 64
+LG ++ E V + +++ LPE D W N + I+DQG C
Sbjct: 45 VLGGPKLPERVGF--SEDINLPESFDAREQWSNCPTIAQIRDQGSC 88
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 40 NVKLPEEVDWRNKGAVTPIKDQGQC 64
N P E+D R VTPI+ QG C
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGC 31
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 40 NVKLPEEVDWRNKGAVTPIKDQGQC 64
N P E+D R VTPI+ QG C
Sbjct: 7 NGNAPAEIDLRQMRTVTPIRMQGGC 31
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 39 DNVKLPEEVD----WRNKGAVTPIKDQGQC 64
+++ LPE D W N + I+DQG C
Sbjct: 3 EDINLPESFDAREQWSNCPTIAQIRDQGSC 32
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 6/32 (18%)
Query: 41 VKLPEEVDWRN-KGA--VTPIKDQ---GQCYK 66
+ LPE DWRN +G V+P+++Q G CY
Sbjct: 204 LSLPESWDWRNVRGINFVSPVRNQESCGSCYS 235
>pdb|3EGW|A Chain A, The Crystal Structure Of The Narghi Mutant Narh - C16a
Length = 1244
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 23 LLGTERVEEGVTYIAPDNVKLPEEVDWRNKG 53
LLGTE +G VK PEEVDW++ G
Sbjct: 731 LLGTEHGIQGKDLGQQGGVK-PEEVDWQDNG 760
>pdb|3IR7|A Chain A, Crystal Structure Of Narghi Mutant Narg-R94s
Length = 1247
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 23 LLGTERVEEGVTYIAPDNVKLPEEVDWRNKG 53
LLGTE +G VK PEEVDW++ G
Sbjct: 732 LLGTEHGIQGKDLGQQGGVK-PEEVDWQDNG 761
>pdb|1Q16|A Chain A, Crystal Structure Of Nitrate Reductase A, Narghi, From
Escherichia Coli
Length = 1247
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 23 LLGTERVEEGVTYIAPDNVKLPEEVDWRNKG 53
LLGTE +G VK PEEVDW++ G
Sbjct: 732 LLGTEHGIQGKDLGQQGGVK-PEEVDWQDNG 761
>pdb|1R27|A Chain A, Crystal Structure Of Nargh Complex
pdb|1R27|C Chain C, Crystal Structure Of Nargh Complex
pdb|1SIW|A Chain A, Crystal Structure Of The Apomolybdo-Narghi
pdb|1Y4Z|A Chain A, The Crystal Structure Of Nitrate Reductase A, Narghi, In
Complex With The Q-Site Inhibitor Pentachlorophenol
pdb|1Y5I|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-K86a
pdb|1Y5L|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-H66y
pdb|1Y5N|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-K86a In
Complex With Pentachlorophenol
Length = 1246
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 23 LLGTERVEEGVTYIAPDNVKLPEEVDWRNKG 53
LLGTE +G VK PEEVDW++ G
Sbjct: 731 LLGTEHGIQGKDLGQQGGVK-PEEVDWQDNG 760
>pdb|3IR6|A Chain A, Crystal Structure Of Narghi Mutant Narg-H49s
Length = 1247
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 23 LLGTERVEEGVTYIAPDNVKLPEEVDWRNKG 53
LLGTE +G VK PEEVDW++ G
Sbjct: 732 LLGTEHGIQGKDLGQQGGVK-PEEVDWQDNG 761
>pdb|3IR5|A Chain A, Crystal Structure Of Narghi Mutant Narg-H49c
Length = 1247
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 23 LLGTERVEEGVTYIAPDNVKLPEEVDWRNKG 53
LLGTE +G VK PEEVDW++ G
Sbjct: 732 LLGTEHGIQGKDLGQQGGVK-PEEVDWQDNG 761
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,289,096
Number of Sequences: 62578
Number of extensions: 74346
Number of successful extensions: 215
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 92
length of query: 66
length of database: 14,973,337
effective HSP length: 37
effective length of query: 29
effective length of database: 12,657,951
effective search space: 367080579
effective search space used: 367080579
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)