RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy394
(66 letters)
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen,
cysteine protease, house DUST mite, dermatop
pteronyssinus; 1.61A {Dermatophagoides pteronyssinus}
SCOP: d.3.1.1
Length = 312
Score = 81.1 bits (201), Expect = 1e-20
Identities = 17/60 (28%), Positives = 22/60 (36%)
Query: 5 WLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
EF + + L T+ T N P E+D R VTPI+ QG C
Sbjct: 52 LSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGC 111
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease,
prosegment binding loop, glycoprotein, lysosome,
protease, zymogen; 2.1A {Homo sapiens}
Length = 315
Score = 80.0 bits (198), Expect = 3e-20
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 1 MSIN----WLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVT 56
+ +N E + +M+ + ++ + +TY + N LP+ VDWR KG VT
Sbjct: 59 LGMNHLGDMTSEEVMSLMSSLRVPSQW------QRNITYKSNPNRILPDSVDWREKGCVT 112
Query: 57 PIKDQGQC 64
+K QG C
Sbjct: 113 EVKYQGSC 120
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain;
2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Length = 314
Score = 78.8 bits (195), Expect = 9e-20
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 1 MSIN----WLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVT 56
+++N E V M G K YI + P+ VD+R KG VT
Sbjct: 58 LAMNHLGDMTSEEVVQKMTGLKVPLS----HSRSNDTLYIPEWEGRAPDSVDYRKKGYVT 113
Query: 57 PIKDQGQC 64
P+K+QGQC
Sbjct: 114 PVKNQGQC 121
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition,
hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1
PDB: 1cjl_A 3hwn_A*
Length = 316
Score = 78.8 bits (195), Expect = 9e-20
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 1 MSIN----WLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVT 56
M++N EF +MNGF+ +G + P + P VDWR KG VT
Sbjct: 58 MAMNAFGDMTSEEFRQVMNGFQNRKP-------RKGKVFQEPLFYEAPRSVDWREKGYVT 110
Query: 57 PIKDQGQC 64
P+K+QGQC
Sbjct: 111 PVKNQGQC 118
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica
papaya} SCOP: d.3.1.1
Length = 322
Score = 78.8 bits (195), Expect = 1e-19
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 1 MSIN----WLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVT 56
+ +N + EF G T +I D V LPE VDWR KGAVT
Sbjct: 65 LGLNEFADLSNDEFNEKYVGSLID----ATIEQSYDEEFINEDIVNLPENVDWRKKGAVT 120
Query: 57 PIKDQGQC 64
P++ QG C
Sbjct: 121 PVRHQGSC 128
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut;
1.85A {Tenebrio molitor}
Length = 331
Score = 77.7 bits (192), Expect = 3e-19
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 1 MSIN----WLHHEFVHMMNGFKRSTRLLGT-ERVEEGVTYIAPDNVKLPEEVDWRNKGAV 55
+ +N E +G L ++ +V+ P DWR++G V
Sbjct: 69 LGVNLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRYPASFDWRDQGMV 128
Query: 56 TPIKDQGQC 64
+P+K+QG C
Sbjct: 129 SPVKNQGSC 137
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease,
cysteine protease, zymogen, hydro; 1.40A {Fasciola
hepatica}
Length = 310
Score = 76.1 bits (188), Expect = 8e-19
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 1 MSIN----WLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVT 56
+ +N EF + +N +P+++DWR G VT
Sbjct: 51 LGLNQFTDMTFEEFKAKYLTEMSRAS-----DILSHGVPYEANNRAVPDKIDWRESGYVT 105
Query: 57 PIKDQGQC 64
+KDQG C
Sbjct: 106 EVKDQGNC 113
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen,
intramolecular DISS bonds, insect larVal midgut; HET:
PG4 PG6; 2.11A {Tenebrio molitor}
Length = 329
Score = 69.2 bits (170), Expect = 3e-16
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 1 MSIN----WLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAVT 56
++N EF+ +N K + E L VDWR AV+
Sbjct: 74 KAMNQFGDMSKEEFLAYVNRGKAQKP----KHPENLRMPYVSSKKPLAASVDWR-SNAVS 128
Query: 57 PIKDQGQC 64
+KDQGQC
Sbjct: 129 EVKDQGQC 136
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein,
hydrola protease, secreted, thiol protease; HET: P6G;
1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A
3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Length = 222
Score = 65.6 bits (161), Expect = 3e-15
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 34 TYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
T N P E+D R VTPI+ QG C
Sbjct: 1 TNACSINGNAPAEIDLRQMRTVTPIRMQGGC 31
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P;
2.42A {Plasmodium falciparum} PDB: 3bpm_A*
Length = 243
Score = 65.7 bits (161), Expect = 3e-15
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 30 EEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
+ Y D DWR G VTP+KDQ C
Sbjct: 7 DVIKKYKPADAKLDRIAYDWRLHGGVTPVKDQALC 41
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular
interaction, HY hydrolase inhibitor complex; 2.20A
{Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A
1yvb_A 3bpf_A* 3pnr_A
Length = 241
Score = 62.2 bits (152), Expect = 7e-14
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 30 EEGVTYIAPDNVKLPEEVDWRNKGAVTPIKDQGQC 64
EE + + DWR VTP+KDQ C
Sbjct: 5 EEVIKKYRGEENFDHAAYDWRLHSGVTPVKDQKNC 39
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 224
Score = 60.6 bits (148), Expect = 2e-13
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 42 KLPEEVDWRNKGAVTPIKDQGQC 64
+LP VDWR++G VTP+KDQ C
Sbjct: 6 ELPAGVDWRSRGCVTPVKDQRDC 28
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic
DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana
divaricata} SCOP: d.3.1.1
Length = 215
Score = 60.6 bits (148), Expect = 2e-13
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP VDWR+KGAV IK+Q QC
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQC 22
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm,
ricinosomes, SEED germi senescence, hydrolase-hydrolase
inhibitor complex; 2.00A {Ricinus communis} SCOP:
d.3.1.1
Length = 229
Score = 60.6 bits (148), Expect = 2e-13
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
+P VDWR KGAVT +KDQGQC
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQC 23
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia
arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Length = 220
Score = 60.6 bits (148), Expect = 2e-13
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR+ GAV IKDQGQC
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQC 22
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is
covalently bound to Cys25, lysosomeal protein; HET:
O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B*
2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A*
2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A*
3n4c_A* 3mpe_A* 1nqc_A* ...
Length = 218
Score = 60.6 bits (148), Expect = 2e-13
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ VDWR KG VT +K QG C
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSC 23
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH
2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP:
d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Length = 208
Score = 60.4 bits (147), Expect = 2e-13
Identities = 16/22 (72%), Positives = 20/22 (90%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LPE++DWR KGAVTP+K+QG C
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSC 22
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP,
cysteine protease, allergen, protease, thiol protease;
1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B
3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A*
1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A*
5pad_A* 6pad_A* ...
Length = 212
Score = 60.2 bits (147), Expect = 2e-13
Identities = 16/22 (72%), Positives = 19/22 (86%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
+PE VDWR KGAVTP+K+QG C
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSC 22
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase;
HET: E64 SO4; 1.87A {Carica candamarcensis}
Length = 213
Score = 60.2 bits (147), Expect = 3e-13
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
+P +DWR KGAVTP+++QG C
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGC 22
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline
specificity, carboh papain family, hydrolase; HET: NAG
FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Length = 221
Score = 60.2 bits (147), Expect = 3e-13
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP+ +DWR GAV P+K+QG C
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGC 24
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya}
SCOP: d.3.1.1 PDB: 1meg_A*
Length = 216
Score = 60.2 bits (147), Expect = 3e-13
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LPE VDWR KGAVTP++ QG C
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSC 22
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine
endoprotease, endopeptidase, LEUP hydrolase; HET: AR7;
2.20A {Hordeum vulgare}
Length = 262
Score = 60.4 bits (147), Expect = 4e-13
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
LP VDWR KGAVT +KDQG+C
Sbjct: 4 LPPSVDWRQKGAVTGVKDQGKC 25
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4;
2.00A {Pachyrhizus erosus} PDB: 2b1n_A*
Length = 246
Score = 59.9 bits (146), Expect = 4e-13
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
PE DW KG +T +K QGQC
Sbjct: 2 APESWDWSKKGVITKVKFQGQC 23
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase,
peptidase_C1A, hydrolase, in form; 1.31A {Crocus
sativus}
Length = 222
Score = 59.1 bits (143), Expect = 8e-13
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P +DWR KGAVT +KDQG C
Sbjct: 2 PASIDWRKKGAVTSVKDQGAC 22
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya}
SCOP: d.3.1.1 PDB: 1gec_E*
Length = 218
Score = 58.7 bits (143), Expect = 9e-13
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P+ +DWR KGAVTP+K+QG C
Sbjct: 2 PQSIDWRAKGAVTPVKNQGAC 22
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3
BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A*
2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A*
3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A*
2nqd_B* 3kse_A* 2vhs_A ...
Length = 220
Score = 58.7 bits (143), Expect = 1e-12
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR KG VTP+K+QGQC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQC 22
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol
protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi}
PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A*
1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A*
1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A*
...
Length = 215
Score = 58.6 bits (143), Expect = 1e-12
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P VDWR +GAVT +KDQGQC
Sbjct: 2 PAAVDWRARGAVTAVKDQGQC 22
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor,
disease mutation, disulfide bond, glycoprotein,
hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo
sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A*
1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A*
1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A*
2bdl_A* ...
Length = 215
Score = 58.3 bits (142), Expect = 1e-12
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P+ VD+R KG VTP+K+QGQC
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQC 22
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR;
HET: E64; 2.10A {Jacaratia mexicana}
Length = 214
Score = 58.2 bits (142), Expect = 2e-12
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
PE +DWR KGAVTP+K+Q C
Sbjct: 2 PESIDWREKGAVTPVKNQNPC 22
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase;
HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Length = 214
Score = 57.9 bits (141), Expect = 2e-12
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 44 PEEVDWRNKGAVTPIKDQGQC 64
P E DWR+KGAVT +KDQG C
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMC 22
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 56.7 bits (137), Expect = 1e-11
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 7 HHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGA---VTPIKDQGQ 63
+ + G R + I + LP DWRN V+P+++Q
Sbjct: 174 LGDMIRRSGGHSRKIPRPKPAPL---TAEIQQKILFLPTSWDWRNVHGINFVSPVRNQAS 230
Query: 64 C 64
C
Sbjct: 231 C 231
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase,
THIO protease; HET: 074; 1.60A {Trypanosoma brucei}
PDB: 3mor_A*
Length = 325
Score = 55.4 bits (134), Expect = 3e-11
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 7/62 (11%)
Query: 7 HHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVD----WRNKGAVTPIKDQG 62
E + K++ + + LP D W N + I DQ
Sbjct: 39 LREAKRLNGVIKKNNN---ASILPKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQS 95
Query: 63 QC 64
C
Sbjct: 96 AC 97
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase,
aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP:
d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Length = 220
Score = 53.2 bits (129), Expect = 9e-11
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 44 PEEVDWRNKGA-VTPIKDQGQC 64
P +DWR KG V+P+K+QG C
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSC 23
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY;
1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Length = 277
Score = 51.9 bits (125), Expect = 5e-10
Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 8/63 (12%)
Query: 10 FVHMMNGFK--RSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNKGAV---TPIKDQ--- 61
F ++ R L R + LP+ DWRN V + ++Q
Sbjct: 1 FRRGQTCYRPLRGDGLAPLGRTTYPRPHEYLSPADLPKSWDWRNVDGVNYASITRNQHIP 60
Query: 62 GQC 64
C
Sbjct: 61 QYC 63
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease,
cathepsin, hydrolase, glycoprotein, thiol protease;
HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X
3ch2_X
Length = 265
Score = 51.2 bits (123), Expect = 8e-10
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 43 LPEEVDWRNKGAVTPIKDQGQC 64
D N + ++DQG C
Sbjct: 10 CNRLKDENNCISNLQVEDQGNC 31
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 51.2 bits (123), Expect = 1e-09
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 12/65 (18%)
Query: 4 NWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNK----GAVTPIK 59
N + F + + +++KLP D R + + I+
Sbjct: 33 NVDMSYLKRLCGTFLGGPKPP--------QRVMFTEDLKLPASFDAREQWPQCPTIKEIR 84
Query: 60 DQGQC 64
DQG C
Sbjct: 85 DQGSC 89
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco
hydrolase, lysosome, protease, thiol protease, zymogen,
CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A*
3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A*
1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A*
1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Length = 266
Score = 50.4 bits (121), Expect = 2e-09
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 38 PDNVKLPEEVDWRNK----GAVTPIKDQGQC 64
+++KLP D R + + I+DQG C
Sbjct: 2 TEDLKLPASFDAREQWPQCPTIKEIRDQGSC 32
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase,
digestive tract, hydrolase-hydrolase INH complex; HET:
074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A*
Length = 254
Score = 49.9 bits (120), Expect = 2e-09
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 41 VKLPEEVDWRNK----GAVTPIKDQGQC 64
V++P D R K ++ I+DQ +C
Sbjct: 1 VEIPSSFDSRKKWPRCKSIATIRDQSRC 28
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A
{Xylella fastidiosa}
Length = 291
Score = 44.8 bits (106), Expect = 2e-07
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 17/78 (21%)
Query: 1 MSINWLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAP--------------DNVKLPEE 46
M + HH + + + R + G YI LP +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMQTVLKRRKKSGYGYIPDIADIRDFSYTPEKSVIAALPPK 60
Query: 47 VDWRNKGAVTPIKDQGQC 64
VD + DQG+
Sbjct: 61 VDLTPP---FQVYDQGRI 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.003
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 4 NWLHHEFVHMMNGFKRSTRLLGTERVEEGVTY----IAPDNVKLPEEV---DWRNKGAVT 56
NW H + + S +L + + + P + +P + W +
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRK--MFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 57 PIKDQGQCYK 66
+ + +K
Sbjct: 404 VMVVVNKLHK 413
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 0.98
Identities = 4/27 (14%), Positives = 12/27 (44%), Gaps = 7/27 (25%)
Query: 18 KRSTRLLGTERVEEGVTYIAPDNVKLP 44
K++ + +++ + A D+ P
Sbjct: 19 KQALK-----KLQASLKLYADDSA--P 38
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling,
asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A
{Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Length = 553
Score = 25.6 bits (56), Expect = 1.1
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 5 WLHHEFVHMMNGFKRSTRLLGTERVEEGVTYIAPDNVKLPEEVDWRNK 52
+L +F+ + ++ G ++E+ + + LP V WR K
Sbjct: 403 FLDKKFLDVAMRINPQDKMCGNGKMEKHILRECFEAY-LPASVAWRQK 449
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics
of pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 106
Score = 25.1 bits (55), Expect = 1.1
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 5 WLHHEFVHMMNGFKRSTRLLG 25
EF GFK+S L
Sbjct: 76 LSRDEFRRKYLGFKKSRNLKS 96
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR
family, hydrolase; 2.35A {Escherichia coli} SCOP:
b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Length = 644
Score = 25.2 bits (56), Expect = 1.5
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 19 RSTRLLGTERVEEGVTYIAPDNVKLPEEV 47
TR +G + + I PD+ L + +
Sbjct: 82 FLTRFVGKVQGKNDRLAIVPDHPLLKDAI 110
>1chd_A CHEB methylesterase; chemotaxis protein, serine hydrolase, carboxyl
methylesteras; 1.75A {Salmonella typhimurium} SCOP:
c.40.1.1
Length = 203
Score = 23.6 bits (52), Expect = 5.6
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 27 ERVEEGVTYIAPDNVKLPEEVDWRNKGAVTPIKD 60
ERV G YIAP + + E+ I D
Sbjct: 72 ERVLPGHAYIAPGDKHM--ELARSGANYQIKIHD 103
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 23.2 bits (50), Expect = 9.0
Identities = 3/9 (33%), Positives = 3/9 (33%)
Query: 9 EFVHMMNGF 17
E GF
Sbjct: 170 EMTRQHLGF 178
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.431
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,074,881
Number of extensions: 47847
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 46
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.2 bits)