BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3940
(83 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 133 bits (335), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 68/82 (82%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YERGDAS DIDTAMKLGAGYPMGPFEL DYVG DTTKFIIDGWH+ +NPLF+P A
Sbjct: 221 LYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDGWHEMDSQNPLFQPSPA 280
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
+NKLV E K G K+GEGFY YK
Sbjct: 281 MNKLVAENKFGKKTGEGFYKYK 302
>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
Length = 310
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 67/82 (81%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YERGDAS DIDTAMKLGAGYPMGPFEL DYVG DTTKFI+DGWH+ ENPL +P +
Sbjct: 221 LYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPS 280
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
LNKLV E K G K+GEGFY YK
Sbjct: 281 LNKLVAENKFGKKTGEGFYKYK 302
>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M75|B Chain B, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 67/82 (81%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YERGDAS DIDTAMKLGAGYPMGPFEL DYVG DTTKFI+DGWH+ ENPL +P +
Sbjct: 221 LYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPS 280
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
LNKLV E K G K+GEGFY YK
Sbjct: 281 LNKLVAENKFGKKTGEGFYKYK 302
>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSJ|B Chain B, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 67/82 (81%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YERGDAS DIDTAMKLGAGYPMGPFEL DYVG DTTKFI+DGWH+ ENPL +P +
Sbjct: 221 LYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPS 280
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
LNKLV E K G K+GEGFY YK
Sbjct: 281 LNKLVAENKFGKKTGEGFYKYK 302
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 67/82 (81%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YERGDAS DIDTAMKLGAGYPMGPFEL DYVG DTTKFI+DGWH+ ENPL +P +
Sbjct: 221 LYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPS 280
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
LNKLV E K G K+GEGFY YK
Sbjct: 281 LNKLVAENKFGKKTGEGFYKYK 302
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 67/82 (81%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YERGDAS DIDTAMKLGAGYPMGPFEL DYVG DTTKFI+DGWH+ ENPL +P +
Sbjct: 221 LYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPS 280
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
LNKLV E K G K+GEGFY YK
Sbjct: 281 LNKLVAENKFGKKTGEGFYKYK 302
>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSO|B Chain B, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 67/82 (81%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YERGDAS DIDTAMKLGAGYPMGPFEL DYVG DTTKFI+DGWH+ ENPL +P +
Sbjct: 221 LYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPS 280
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
LNKLV E K G K+GEGFY YK
Sbjct: 281 LNKLVAENKFGKKTGEGFYKYK 302
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 67/82 (81%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YERGDAS DIDTAMKLGAGYPMGPFEL DYVG DTTKFI+DGWH+ ENPL +P +
Sbjct: 221 LYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPS 280
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
LNKLV E K G K+GEGFY YK
Sbjct: 281 LNKLVAENKFGKKTGEGFYKYK 302
>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M76|B Chain B, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 130 bits (326), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 67/82 (81%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YERGDAS DIDTAMKLGAGYPMGPFEL DYVG DTTKFI+DGWH+ ENPL +P +
Sbjct: 221 LYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPS 280
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
LNKLV E K G K+GEGFY YK
Sbjct: 281 LNKLVAENKFGKKTGEGFYKYK 302
>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 293
Score = 127 bits (320), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/82 (71%), Positives = 65/82 (79%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YERGDAS DIDTA KLGAGYP GPFEL DYVG DTTKFI+DGWH+ ENPL +P +
Sbjct: 210 LYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAENPLHQPSPS 269
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
LNKLV E K G K+GEGFY YK
Sbjct: 270 LNKLVAENKFGKKTGEGFYKYK 291
>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
pdb|3RQS|B Chain B, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
Length = 324
Score = 127 bits (319), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/82 (71%), Positives = 65/82 (79%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YERGDAS DIDTA KLGAGYP GPFEL DYVG DTTKFI+DGWH+ ENPL +P +
Sbjct: 243 LYERGDASKEDIDTAXKLGAGYPXGPFELLDYVGLDTTKFIVDGWHEXDAENPLHQPSPS 302
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
LNKLV E K G K+GEGFY YK
Sbjct: 303 LNKLVAENKFGKKTGEGFYKYK 324
>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|B Chain B, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|C Chain C, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
Length = 483
Score = 60.1 bits (144), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 7 ASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVD 66
A+P ID A++ GAG+PMGP EL D +G D + F + F P +LV
Sbjct: 211 AAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFAVTCSVFNAFWQERRFLPSLVQQELVI 270
Query: 67 EGKLGVKSGEGFYNYK 82
G+LG KSG G Y+++
Sbjct: 271 GGRLGKKSGLGVYDWR 286
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 3 ERGDASPRDIDTAMKLGAGYPMGPFELADYVG 34
++G AS +DIDTAM+LG YP GP +G
Sbjct: 406 QKGVASEQDIDTAMRLGVNYPYGPLAWGAQLG 437
>pdb|3CTV|A Chain A, Crystal Structure Of Central Domain Of 3-Hydroxyacyl-Coa
Dehydrogenase From Archaeoglobus Fulgidus
Length = 110
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+ E G A+P+DIDTA+KLG P GPFELA G + ++ K+F + +F+P
Sbjct: 34 LVEXGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQFGKK-IFEPA-- 90
Query: 61 LNKLVDEGKL 70
K + EGKL
Sbjct: 91 --KTLKEGKL 98
>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E12|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E13|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
Length = 283
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 5 GDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKL 64
G A P ID ++G G P GPFE+ D VG TT + I P+ F N
Sbjct: 211 GIADPETIDKTWRIGTGAPKGPFEIFDIVGL-TTAYNISSVSG--PKQREFAAYLKEN-Y 266
Query: 65 VDEGKLGVKSGEGFYNY 81
+D+GKLG+ +GEGFY Y
Sbjct: 267 IDKGKLGLATGEGFYRY 283
>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase
(Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At
2.00 A Resolution
Length = 293
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 11 DIDTAMK--LGAGYPM-GPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVDE 67
D+D K LG Y + GP DY+G D + +K+F + FKP + L + + +
Sbjct: 199 DVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLYLYKRFGDEK-FKPPEWLQEKIKK 257
Query: 68 GKLGVKSGEGFYNY 81
G++GVK+G+G Y Y
Sbjct: 258 GEVGVKAGKGIYEY 271
>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 715
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 21 GYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVDEGKLGVKSGEGFYN 80
G+PMGP L D VG DT D + FP+ A++ L + +LG K+G+GFY
Sbjct: 532 GWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYEAKRLGQKNGKGFYA 591
Query: 81 YK 82
Y+
Sbjct: 592 YE 593
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 7 ASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDAL----- 61
+ P D+D ++ G+ MGPF ++D G D I G P P PV
Sbjct: 519 SKPEDVDGVLE-EFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRY 577
Query: 62 ----NKLVDEGKLGVKSGEGFYNYKK 83
+ L + G+ G K+G+G+Y Y K
Sbjct: 578 SPLGDMLCEAGRFGQKTGKGWYQYDK 603
Score = 33.5 bits (75), Expect = 0.035, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 7 ASPRDIDTAMKLGAGYPM---GPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
A P ID G G+P GP A VG T + ++++ P+ P +P D L +
Sbjct: 660 ARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRR 719
Query: 64 LVDEGKLGVK 73
LV +G +K
Sbjct: 720 LVAQGSPPLK 729
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 7 ASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDAL----- 61
+ P D+D ++ G+ MGPF ++D G D I G P P PV
Sbjct: 504 SKPEDVDGVLE-EFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRY 562
Query: 62 ----NKLVDEGKLGVKSGEGFYNYKK 83
+ L + G+ G K+G+G+Y Y K
Sbjct: 563 SPLGDMLCEAGRFGQKTGKGWYQYDK 588
Score = 33.1 bits (74), Expect = 0.037, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 7 ASPRDIDTAMKLGAGYPM---GPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
A P ID G G+P GP A VG T + ++++ P+ P +P D L +
Sbjct: 645 ARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRR 704
Query: 64 LVDEGKLGVK 73
LV +G +K
Sbjct: 705 LVAQGSPPLK 714
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 7 ASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDAL----- 61
+ P D+D ++ G+ MGPF ++D G D I G P P PV
Sbjct: 519 SKPEDVDGVLE-EFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRY 577
Query: 62 ----NKLVDEGKLGVKSGEGFYNYKK 83
+ L + G+ G K+G+G+Y Y K
Sbjct: 578 SPLGDMLCEAGRFGQKTGKGWYQYDK 603
Score = 33.1 bits (74), Expect = 0.036, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 7 ASPRDIDTAMKLGAGYPM---GPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
A P ID G G+P GP A VG T + ++++ P+ P +P D L +
Sbjct: 660 ARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRR 719
Query: 64 LVDEGKLGVK 73
LV +G +K
Sbjct: 720 LVAQGSPPLK 729
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 7 ASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDAL----- 61
+ P D+D ++ G+ MGPF ++D G D I G P P PV
Sbjct: 240 SKPEDVDGVLE-EFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRY 298
Query: 62 ----NKLVDEGKLGVKSGEGFYNYKK 83
+ L + G+ G K+G+G+Y Y K
Sbjct: 299 SPLGDMLCEAGRFGQKTGKGWYQYDK 324
Score = 32.7 bits (73), Expect = 0.049, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 7 ASPRDIDTAMKLGAGYPM---GPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
A P ID G G+P GP A VG T + ++++ P+ P +P D L +
Sbjct: 381 ARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRR 440
Query: 64 LVDEGKLGVK 73
LV +G +K
Sbjct: 441 LVAQGSPPLK 450
>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2
Length = 725
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 7 ASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVD 66
A P ID A+ G PMGPF L D VG + + F E + L + +
Sbjct: 517 ADPYLIDRAIS-KFGMPMGPFRLCDLVGFGVAIATATQFIENFSERTYKSMIIPLMQ--E 573
Query: 67 EGKLGVKSGEGFYNY 81
+ + G + +GFY Y
Sbjct: 574 DKRAGEATRKGFYLY 588
>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of
Multifuctional Enzyme 1 From C.Elegans
Length = 460
Score = 29.3 bits (64), Expect = 0.64, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
MYE G P ID + G+ MGP +AD G D + + NP+ K +
Sbjct: 252 MYEYG-YLPHQIDKIIT-NFGFLMGPMTVADMNGFDVMEKLKK--ENGLEPNPIEKEMWR 307
Query: 61 LNKLVDEGKLGVKSGEGFYNY 81
L + G K+ +GFY Y
Sbjct: 308 LK------RYGRKTNKGFYKY 322
>pdb|2VKD|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKD|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKD|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Manganese Ion
pdb|2VKH|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VKH|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VKH|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp-glc And
Calcium Ion
pdb|2VL8|A Chain A, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
pdb|2VL8|B Chain B, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
pdb|2VL8|C Chain C, Crystal Structure Of The Catalytic Domain Of Lethal Toxin
From Clostridium Sordellii In Complex With Udp,
Castanospermine And Calcium Ion
Length = 546
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 36 DTTKFIIDGWHKKFPENPLFKPVDALNKLVDEG--KLGVKSGEGFYNYKK 83
+ +FIID K + N K ++ALNK ++E K+ +G N +K
Sbjct: 196 ENPEFIIDNIIKTYLSNEYSKDLEALNKYIEESLNKITANNGNDIRNLEK 245
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 6 DASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWH 46
D SPR+ +LG + M L D + + T++F +DG+
Sbjct: 415 DGSPRESFGGGRLGTTHAMSRRVLVDSIKYLTSEFKVDGFR 455
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.142 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,086,802
Number of Sequences: 62578
Number of extensions: 127994
Number of successful extensions: 276
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 31
length of query: 83
length of database: 14,973,337
effective HSP length: 51
effective length of query: 32
effective length of database: 11,781,859
effective search space: 377019488
effective search space used: 377019488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)