BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3940
(83 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P00348|HCDH_PIG Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Sus scrofa
GN=HADH PE=1 SV=2
Length = 314
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 68/82 (82%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YERGDAS DIDTAMKLGAGYPMGPFEL DYVG DTTKFIIDGWH+ +NPLF+P A
Sbjct: 233 LYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIIDGWHEMDSQNPLFQPSPA 292
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
+NKLV E K G K+GEGFY YK
Sbjct: 293 MNKLVAENKFGKKTGEGFYKYK 314
>sp|Q61425|HCDH_MOUSE Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Mus musculus
GN=Hadh PE=1 SV=2
Length = 314
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 69/82 (84%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
++ERGDAS DIDTAMKLGAGYPMGPFEL DYVG DTTKFI+DGWH+ PENPLF+P +
Sbjct: 233 LHERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFILDGWHEMEPENPLFQPSPS 292
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
+N LV + KLG K+GEGFY YK
Sbjct: 293 MNNLVAQKKLGKKTGEGFYKYK 314
>sp|Q9WVK7|HCDH_RAT Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Rattus
norvegicus GN=Hadh PE=2 SV=1
Length = 314
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 69/82 (84%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
++ERGDAS DIDTAMKLGAGYPMGPFEL DYVG DTTKFI+DGWH+ PENPLF+P +
Sbjct: 233 LHERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFILDGWHEMDPENPLFQPSPS 292
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
+N LV + KLG K+GEGFY YK
Sbjct: 293 MNNLVAQKKLGKKTGEGFYKYK 314
>sp|P41938|HCDH2_CAEEL Probable 3-hydroxyacyl-CoA dehydrogenase B0272.3 OS=Caenorhabditis
elegans GN=B0272.3 PE=1 SV=1
Length = 309
Score = 131 bits (329), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/82 (71%), Positives = 64/82 (78%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YERGDAS DID AMKLGAGYPMGPFEL+DYVG DT KFI+DGWH ++PE F P
Sbjct: 228 LYERGDASMEDIDVAMKLGAGYPMGPFELSDYVGLDTCKFIMDGWHAQYPEEVAFTPSPL 287
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
LN LVD GK G KSGEGFY YK
Sbjct: 288 LNSLVDSGKNGRKSGEGFYKYK 309
>sp|Q16836|HCDH_HUMAN Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Homo sapiens
GN=HADH PE=1 SV=3
Length = 314
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 67/82 (81%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YERGDAS DIDTAMKLGAGYPMGPFEL DYVG DTTKFI+DGWH+ ENPL +P +
Sbjct: 233 LYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPS 292
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
LNKLV E K G K+GEGFY YK
Sbjct: 293 LNKLVAENKFGKKTGEGFYKYK 314
>sp|P34439|HCDH1_CAEEL Probable 3-hydroxyacyl-CoA dehydrogenase F54C8.1 OS=Caenorhabditis
elegans GN=F54C8.1 PE=3 SV=1
Length = 298
Score = 125 bits (314), Expect = 9e-29, Method: Composition-based stats.
Identities = 57/83 (68%), Positives = 68/83 (81%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
MYERGDAS DID AMKLGAG+PMGPFELADY+G DT KF++DGW K+PE LF+
Sbjct: 216 MYERGDASMTDIDEAMKLGAGHPMGPFELADYIGLDTVKFVMDGWAAKYPEVQLFEASPL 275
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
++KLV EGKLG K+G+GFY+YKK
Sbjct: 276 VDKLVAEGKLGRKTGDGFYSYKK 298
>sp|O53753|FADB2_MYCTU 3-hydroxybutyryl-CoA dehydrogenase OS=Mycobacterium tuberculosis
GN=fadB2 PE=1 SV=1
Length = 286
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
M E G A+ D+D A+ G +PMGP L+D VG DT K I D ++F E P + P
Sbjct: 207 MVEAGFATVEDVDKAVVAGLSHPMGPLRLSDLVGLDTLKLIADKMFEEFKE-PHYGPPPL 265
Query: 61 LNKLVDEGKLGVKSGEGFYNY 81
L ++V+ G+LG KSG GFY Y
Sbjct: 266 LLRMVEAGQLGKKSGRGFYTY 286
>sp|Q9RVG1|HBD_DEIRA Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
GN=hbd PE=3 SV=1
Length = 278
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 5 GDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKL 64
G A P ID MKLG +PMGP LAD++G DT I++ H+ ++ ++P L K+
Sbjct: 203 GVAEPEAIDGIMKLGMNHPMGPLTLADFIGLDTCLAIMEVLHQGLGDDK-YRPSPLLRKM 261
Query: 65 VDEGKLGVKSGEGFYNY 81
V G LG KSGEGFY Y
Sbjct: 262 VQAGLLGRKSGEGFYKY 278
>sp|P52041|HBD_CLOAB 3-hydroxybutyryl-CoA dehydrogenase OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=hbd PE=3 SV=2
Length = 282
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+ G AS DID AMKLGA +PMGP EL D++G D I+D + + ++ ++P
Sbjct: 201 ILAEGIASVEDIDKAMKLGANHPMGPLELGDFIGLDICLAIMDVLYSETGDSK-YRPHTL 259
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
L K V G LG KSG+GFY+Y K
Sbjct: 260 LKKYVRAGWLGRKSGKGFYDYSK 282
>sp|P45856|HBD_BACSU Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Bacillus subtilis
(strain 168) GN=mmgB PE=2 SV=1
Length = 287
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 37/83 (44%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YE G A P ID MKLG +PMGP LAD++G DT I++ H ++ ++P
Sbjct: 204 VYE-GVAKPEAIDEVMKLGMNHPMGPLALADFIGLDTCLSIMEVLHSGLGDSK-YRPCPL 261
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
L K V G LG KSG GFY+Y++
Sbjct: 262 LRKYVKAGWLGKKSGRGFYDYEE 284
>sp|Q45223|HBD_BRAJA 3-hydroxybutyryl-CoA dehydrogenase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=hbdA PE=3 SV=1
Length = 293
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YE G + ID AMKLGA +PMGP ELAD++G DT I+ H+ ++ ++P
Sbjct: 206 LYE-GVGNVEAIDAAMKLGAHHPMGPLELADFIGLDTCLSIMQVLHEGLADSK-YRPCPL 263
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
L K V+ G LG K+ GFY+Y+
Sbjct: 264 LVKYVEAGWLGRKTQRGFYDYR 285
>sp|P77851|HBD_THETC 3-hydroxybutyryl-CoA dehydrogenase OS=Thermoanaerobacterium
thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB
9385 / NCA 3814) GN=hbd PE=3 SV=2
Length = 281
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 5 GDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKL 64
G A+ DID AMKLGA +P+GP L+D +G+D I++ ++++ ++ ++P L K+
Sbjct: 205 GVATAEDIDEAMKLGANHPIGPLALSDLIGNDVVLAIMNVLYEEYGDSK-YRPHPLLKKM 263
Query: 65 VDEGKLGVKSGEGFYNYK 82
V G LG K+G+GF+ YK
Sbjct: 264 VRGGLLGRKTGKGFFEYK 281
>sp|P45364|HBD_CLODI 3-hydroxybutyryl-CoA dehydrogenase OS=Clostridium difficile GN=hbd
PE=3 SV=1
Length = 281
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+Y G AS +ID AMKLGA +PMGP L D +G D I++ + +F + +
Sbjct: 200 IYADGVASKEEIDEAMKLGANHPMGPLALGDLIGLDVVLAIMNVLYTEFGDTK-YTAHPL 258
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
L K+V +LG K+ GFY+Y K
Sbjct: 259 LAKMVRANQLGRKTKIGFYDYNK 281
>sp|P76083|PAAH_ECOLI 3-hydroxyadipyl-CoA dehydrogenase OS=Escherichia coli (strain K12)
GN=paaH PE=1 SV=1
Length = 475
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 7 ASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVD 66
A+P ID A++ GAG+PMGP EL D +G D + F + F P +LV
Sbjct: 211 AAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFAVTCSVFNAFWQERRFLPSLVQQELVI 270
Query: 67 EGKLGVKSGEGFYNYK 82
G+LG KSG G Y+++
Sbjct: 271 GGRLGKKSGLGVYDWR 286
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 3 ERGDASPRDIDTAMKLGAGYPMGPFELADYVG 34
++G AS +DIDTAM+LG YP GP +G
Sbjct: 406 QKGVASEQDIDTAMRLGVNYPYGPLAWGAQLG 437
>sp|Q6DAP5|FADB_ERWCT Fatty acid oxidation complex subunit alpha OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=fadB PE=3 SV=1
Length = 729
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R+ID AM+ G+PMGP L D VG DT + FP+ DA++
Sbjct: 515 RDGADFREIDNAMEKKFGWPMGPAYLLDVVGIDTAHHAQAVMAEGFPQRMAKDYRDAIDV 574
Query: 64 LVDEGKLGVKSGEGFYNYK 82
L + + G K+G+GFY Y+
Sbjct: 575 LFEHQRFGQKNGQGFYRYQ 593
>sp|Q8BMS1|ECHA_MOUSE Trifunctional enzyme subunit alpha, mitochondrial OS=Mus musculus
GN=Hadha PE=1 SV=1
Length = 763
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 9 PRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVDEG 68
P+ +D A+ G G+P+G LAD VG D + + + K F E V+ L ++V +G
Sbjct: 568 PKKLD-ALTTGFGFPVGAATLADEVGVDVAQHVAEDLGKAFGERFGGGSVELLKQMVSKG 626
Query: 69 KLGVKSGEGFYNYKK 83
LG KSG+GFY Y++
Sbjct: 627 FLGRKSGKGFYIYQE 641
>sp|A7MQP0|FADB_CROS8 Fatty acid oxidation complex subunit alpha OS=Cronobacter sakazakii
(strain ATCC BAA-894) GN=fadB PE=3 SV=1
Length = 729
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R ID M+ G+PMGP L D VG DT FP+ DA++
Sbjct: 515 RDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D G+ G K+G+GFY Y++
Sbjct: 575 LFDAGRFGQKNGKGFYAYQE 594
>sp|Q7MQH9|FADB_VIBVY Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus
(strain YJ016) GN=fadB PE=3 SV=1
Length = 723
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 39/81 (48%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
M R A ID M+ G+PMGP L D VG DT + FPE + DA
Sbjct: 513 MLLRDGADFTQIDKVMERKFGWPMGPAYLLDVVGIDTAHHAQAVMAQGFPERMGKQGRDA 572
Query: 61 LNKLVDEGKLGVKSGEGFYNY 81
++ L + K G K+G GFY Y
Sbjct: 573 IDALFEANKYGQKNGSGFYTY 593
>sp|Q8DDK6|FADB_VIBVU Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus
(strain CMCP6) GN=fadB PE=3 SV=1
Length = 723
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 39/81 (48%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
M R A ID M+ G+PMGP L D VG DT + FPE + DA
Sbjct: 513 MLLRDGADFTQIDKVMERKFGWPMGPAYLLDVVGIDTAHHAQAVMAQGFPERMGKQGRDA 572
Query: 61 LNKLVDEGKLGVKSGEGFYNY 81
++ L + K G K+G GFY Y
Sbjct: 573 IDALFEANKYGQKNGSGFYTY 593
>sp|A1JIG4|FADB_YERE8 Fatty acid oxidation complex subunit alpha OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=fadB PE=3 SV=1
Length = 729
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 40/83 (48%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
M R A R ID M+ G+PMGP L D VG DT FPE DA
Sbjct: 512 MLVRDGADFRQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAVGFPERMNKDYRDA 571
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
++ + D + G K+G+GFY Y +
Sbjct: 572 VDVMFDNQRFGQKNGQGFYRYTQ 594
>sp|A7N1D2|FADB_VIBHB Fatty acid oxidation complex subunit alpha OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=fadB PE=3 SV=1
Length = 723
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 40/81 (49%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
M R A ID M+ G+PMGP L D VG DT + FPE + DA
Sbjct: 513 MLLRDGADFTKIDKIMERKFGWPMGPAYLLDVVGIDTAHHAQAVMAQGFPERMGKQGRDA 572
Query: 61 LNKLVDEGKLGVKSGEGFYNY 81
++ L + K G K+G GFY+Y
Sbjct: 573 IDALFEASKYGQKNGSGFYSY 593
>sp|Q87TN9|FADB_VIBPA Fatty acid oxidation complex subunit alpha OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=fadB PE=3 SV=1
Length = 723
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 40/81 (49%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
M R A +D M+ G+PMGP L D VG DT + FPE + DA
Sbjct: 513 MLLRDGADFTKVDKVMERKFGWPMGPAYLLDVVGIDTAHHAQAVMAEGFPERMGKQGRDA 572
Query: 61 LNKLVDEGKLGVKSGEGFYNY 81
++ L + K G K+G GFY+Y
Sbjct: 573 IDALFEANKYGQKNGNGFYSY 593
>sp|Q64428|ECHA_RAT Trifunctional enzyme subunit alpha, mitochondrial OS=Rattus
norvegicus GN=Hadha PE=1 SV=2
Length = 763
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 9 PRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVDEG 68
P+ +D A+ G G+P+G LAD VG D + + + K F E V+ L +V +G
Sbjct: 568 PKKLD-ALTTGFGFPVGAATLADEVGIDVAQHVAEDLGKAFGERFGGGSVELLKLMVSKG 626
Query: 69 KLGVKSGEGFYNYK 82
LG KSG+GFY Y+
Sbjct: 627 FLGRKSGKGFYIYQ 640
>sp|Q29554|ECHA_PIG Trifunctional enzyme subunit alpha, mitochondrial OS=Sus scrofa
GN=HADHA PE=1 SV=1
Length = 763
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 9 PRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVDEG 68
P+ +D+ + G+P+G L D VG D K + + K F E +D L +++ +G
Sbjct: 568 PKKLDS-LTTSFGFPVGAATLMDEVGMDVAKHVAENLGKIFGERFAGGNLDVLKQMISKG 626
Query: 69 KLGVKSGEGFYNYKK 83
LG KSG+GFY Y++
Sbjct: 627 FLGRKSGKGFYVYQE 641
>sp|B5RFL6|FADB_SALG2 Fatty acid oxidation complex subunit alpha OS=Salmonella gallinarum
(strain 287/91 / NCTC 13346) GN=fadB PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R +D M+ G+PMGP L D VG DT FP+ + DA++
Sbjct: 515 RDGADFRKVDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKEYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D + G K+G GF+ YK+
Sbjct: 575 LFDASRFGQKNGLGFWRYKE 594
>sp|B5QW85|FADB_SALEP Fatty acid oxidation complex subunit alpha OS=Salmonella
enteritidis PT4 (strain P125109) GN=fadB PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R +D M+ G+PMGP L D VG DT FP+ + DA++
Sbjct: 515 RDGADFRKVDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKEYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D + G K+G GF+ YK+
Sbjct: 575 LFDASRFGQKNGLGFWRYKE 594
>sp|Q8Z3C6|FADB_SALTI Fatty acid oxidation complex subunit alpha OS=Salmonella typhi
GN=fadB PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R +D M+ G+PMGP L D VG DT FP+ + DA++
Sbjct: 515 RDGADFRKVDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKEYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D + G K+G GF+ YK+
Sbjct: 575 LFDASRFGQKNGLGFWRYKE 594
>sp|A9MYB0|FADB_SALPB Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi
B (strain ATCC BAA-1250 / SPB7) GN=fadB PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R +D M+ G+PMGP L D VG DT FP+ + DA++
Sbjct: 515 RDGADFRKVDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKEYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D + G K+G GF+ YK+
Sbjct: 575 LFDASRFGQKNGLGFWRYKE 594
>sp|Q57HM6|FADB_SALCH Fatty acid oxidation complex subunit alpha OS=Salmonella
choleraesuis (strain SC-B67) GN=fadB PE=3 SV=2
Length = 729
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R +D M+ G+PMGP L D VG DT FP+ + DA++
Sbjct: 515 RDGADFRKVDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKEYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D + G K+G GF+ YK+
Sbjct: 575 LFDASRFGQKNGLGFWRYKE 594
>sp|B4TNZ1|FADB_SALSV Fatty acid oxidation complex subunit alpha OS=Salmonella
schwarzengrund (strain CVM19633) GN=fadB PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R +D M+ G+PMGP L D VG DT FP+ + DA++
Sbjct: 515 RDGADFRKVDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKEYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D + G K+G GF+ YK+
Sbjct: 575 LFDASRFGQKNGLGFWRYKE 594
>sp|B4SZ85|FADB_SALNS Fatty acid oxidation complex subunit alpha OS=Salmonella newport
(strain SL254) GN=fadB PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R +D M+ G+PMGP L D VG DT FP+ + DA++
Sbjct: 515 RDGADFRKVDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKEYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D + G K+G GF+ YK+
Sbjct: 575 LFDASRFGQKNGLGFWRYKE 594
>sp|B5EZW0|FADB_SALA4 Fatty acid oxidation complex subunit alpha OS=Salmonella agona
(strain SL483) GN=fadB PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R +D M+ G+PMGP L D VG DT FP+ + DA++
Sbjct: 515 RDGADFRKVDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKEYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D + G K+G GF+ YK+
Sbjct: 575 LFDASRFGQKNGLGFWRYKE 594
>sp|B7VGL4|FADB_VIBSL Fatty acid oxidation complex subunit alpha OS=Vibrio splendidus
(strain LGP32) GN=fadB PE=3 SV=1
Length = 723
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 38/81 (46%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
M R A ID M+ G+PMGP L D VG DT + FPE + DA
Sbjct: 513 MLLRDGADFTKIDKVMERKFGWPMGPAYLLDVVGLDTAHHAQAVMAQGFPERMGKEGRDA 572
Query: 61 LNKLVDEGKLGVKSGEGFYNY 81
++ L K G K+G GFY Y
Sbjct: 573 IDALYVAEKYGQKNGSGFYTY 593
>sp|B5YY93|FADB_ECO5E Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=fadB PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R ID M+ G+PMGP L D VG DT FP+ DA++
Sbjct: 515 RDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D + G K+G GF++YK+
Sbjct: 575 LFDANRFGQKNGLGFWHYKE 594
>sp|Q8X8I2|FADB_ECO57 Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O157:H7 GN=fadB PE=3 SV=1
Length = 729
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R ID M+ G+PMGP L D VG DT FP+ DA++
Sbjct: 515 RDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D + G K+G GF++YK+
Sbjct: 575 LFDANRFGQKNGLGFWHYKE 594
>sp|Q32A21|FADB_SHIDS Fatty acid oxidation complex subunit alpha OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=fadB PE=3 SV=1
Length = 729
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 40/80 (50%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R ID M+ G+PMGP L D VG DT FP+ DA++
Sbjct: 515 RDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D + G K+G GF++YK+
Sbjct: 575 LFDANRFGQKNGLGFWHYKE 594
>sp|B5BIZ0|FADB_SALPK Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi
A (strain AKU_12601) GN=fadB PE=3 SV=1
Length = 725
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R +D M+ G+PMGP L D VG DT FP+ + DA++
Sbjct: 515 RDGADFRKVDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKEYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D + G K+G GF+ YK+
Sbjct: 575 LFDANRFGQKNGLGFWRYKE 594
>sp|Q5PKQ2|FADB_SALPA Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi
A (strain ATCC 9150 / SARB42) GN=fadB PE=3 SV=1
Length = 725
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R +D M+ G+PMGP L D VG DT FP+ + DA++
Sbjct: 515 RDGADFRKVDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKEYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D + G K+G GF+ YK+
Sbjct: 575 LFDANRFGQKNGLGFWRYKE 594
>sp|B1JP63|FADB_YERPY Fatty acid oxidation complex subunit alpha OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=fadB
PE=3 SV=1
Length = 729
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
M R ID M+ G+PMGP L D VG DT FPE DA
Sbjct: 512 MLVRDGGDFHQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPERMNKDYRDA 571
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
++ + D + G K+G+GFY Y +
Sbjct: 572 VDVMFDNQRFGQKNGQGFYRYTQ 594
>sp|Q66FR8|FADB_YERPS Fatty acid oxidation complex subunit alpha OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=fadB
PE=3 SV=1
Length = 729
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
M R ID M+ G+PMGP L D VG DT FPE DA
Sbjct: 512 MLVRDGGDFHQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPERMNKDYRDA 571
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
++ + D + G K+G+GFY Y +
Sbjct: 572 VDVMFDNQRFGQKNGQGFYRYTQ 594
>sp|A4TR27|FADB_YERPP Fatty acid oxidation complex subunit alpha OS=Yersinia pestis
(strain Pestoides F) GN=fadB PE=3 SV=1
Length = 729
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
M R ID M+ G+PMGP L D VG DT FPE DA
Sbjct: 512 MLVRDGGDFHQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPERMNKDYRDA 571
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
++ + D + G K+G+GFY Y +
Sbjct: 572 VDVMFDNQRFGQKNGQGFYRYTQ 594
>sp|Q1CN99|FADB_YERPN Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv.
Antiqua (strain Nepal516) GN=fadB PE=3 SV=1
Length = 729
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
M R ID M+ G+PMGP L D VG DT FPE DA
Sbjct: 512 MLVRDGGDFHQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPERMNKDYRDA 571
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
++ + D + G K+G+GFY Y +
Sbjct: 572 VDVMFDNQRFGQKNGQGFYRYTQ 594
>sp|A9R754|FADB_YERPG Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv.
Antiqua (strain Angola) GN=fadB PE=3 SV=1
Length = 729
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
M R ID M+ G+PMGP L D VG DT FPE DA
Sbjct: 512 MLVRDGGDFHQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPERMNKDYRDA 571
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
++ + D + G K+G+GFY Y +
Sbjct: 572 VDVMFDNQRFGQKNGQGFYRYTQ 594
>sp|Q8ZAN0|FADB_YERPE Fatty acid oxidation complex subunit alpha OS=Yersinia pestis
GN=fadB PE=3 SV=1
Length = 729
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
M R ID M+ G+PMGP L D VG DT FPE DA
Sbjct: 512 MLVRDGGDFHQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPERMNKDYRDA 571
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
++ + D + G K+G+GFY Y +
Sbjct: 572 VDVMFDNQRFGQKNGQGFYRYTQ 594
>sp|B2K0Z6|FADB_YERPB Fatty acid oxidation complex subunit alpha OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=fadB
PE=3 SV=1
Length = 729
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
M R ID M+ G+PMGP L D VG DT FPE DA
Sbjct: 512 MLVRDGGDFHQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPERMNKDYRDA 571
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
++ + D + G K+G+GFY Y +
Sbjct: 572 VDVMFDNQRFGQKNGQGFYRYTQ 594
>sp|Q1C2C4|FADB_YERPA Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv.
Antiqua (strain Antiqua) GN=fadB PE=3 SV=1
Length = 729
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
M R ID M+ G+PMGP L D VG DT FPE DA
Sbjct: 512 MLVRDGGDFHQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPERMNKDYRDA 571
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
++ + D + G K+G+GFY Y +
Sbjct: 572 VDVMFDNQRFGQKNGQGFYRYTQ 594
>sp|A7FDF2|FADB_YERP3 Fatty acid oxidation complex subunit alpha OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=fadB PE=3 SV=1
Length = 729
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
M R ID M+ G+PMGP L D VG DT FPE DA
Sbjct: 512 MLVRDGGDFHQIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPERMNKDYRDA 571
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
++ + D + G K+G+GFY Y +
Sbjct: 572 VDVMFDNQRFGQKNGQGFYRYTQ 594
>sp|B7LTY9|FADB_ESCF3 Fatty acid oxidation complex subunit alpha OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=fadB PE=3 SV=1
Length = 729
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R ID M+ G+PMGP L D VG DT FP+ DA++
Sbjct: 515 RDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D + G K+G GF+ YK+
Sbjct: 575 LFDANRFGQKNGLGFWRYKE 594
>sp|A8A6V1|FADB_ECOHS Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O9:H4 (strain HS) GN=fadB PE=3 SV=1
Length = 729
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R ID M+ G+PMGP L D VG DT FP+ DA++
Sbjct: 515 RDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D + G K+G GF+ YK+
Sbjct: 575 LFDANRFGQKNGLGFWRYKE 594
>sp|B2TVJ5|FADB_SHIB3 Fatty acid oxidation complex subunit alpha OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=fadB PE=3
SV=1
Length = 729
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%)
Query: 4 RGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
R A R ID M+ G+PMGP L D VG DT FP+ DA++
Sbjct: 515 RDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDA 574
Query: 64 LVDEGKLGVKSGEGFYNYKK 83
L D + G K+G GF+ YK+
Sbjct: 575 LFDANRFGQKNGLGFWRYKE 594
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.142 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,322,026
Number of Sequences: 539616
Number of extensions: 1480846
Number of successful extensions: 3334
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 2937
Number of HSP's gapped (non-prelim): 322
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)