RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3940
(83 letters)
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex,
oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP:
a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A*
1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A*
3hdh_A*
Length = 302
Score = 148 bits (377), Expect = 2e-46
Identities = 61/82 (74%), Positives = 67/82 (81%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+YERGDAS DIDTAMKLGAGYPMGPFEL DYVG DTTKFI+DGWH+ ENPL +P +
Sbjct: 221 LYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPS 280
Query: 61 LNKLVDEGKLGVKSGEGFYNYK 82
LNKLV E K G K+GEGFY YK
Sbjct: 281 LNKLVAENKFGKKTGEGFYKYK 302
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 127 bits (321), Expect = 8e-37
Identities = 31/83 (37%), Positives = 43/83 (51%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
E A+P ID A++ GAG+PMGP EL D +G D + F + F P
Sbjct: 205 ALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFAVTCSVFNAFWQERRFLPSLV 264
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
+LV G+LG KSG G Y+++
Sbjct: 265 QQELVIGGRLGKKSGLGVYDWRA 287
Score = 100 bits (252), Expect = 5e-27
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
++G AS +DIDTAM+LG YP GP +G +++ + E ++P
Sbjct: 404 ALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGE-ERYRPCSL 462
Query: 61 LNK--LVDEGKLGVKSGEGFYNY 81
L + L++ G EG +++
Sbjct: 463 LRQRALLESG----YESEGHHHH 481
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: PE8; 2.00A {Archaeoglobus
fulgidus}
Length = 293
Score = 111 bits (281), Expect = 3e-32
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 1 MYERGDASPRDIDTAMK--LGAGYPM-GPFELADYVGHDTTKFIIDGWHKKFPENPLFKP 57
M E G D+D K LG Y + GP DY+G D + +K+F + FKP
Sbjct: 190 MIEEG-VRAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLYLYKRFGD-EKFKP 247
Query: 58 VDALNKLVDEGKLGVKSGEGFYNYKK 83
+ L + + +G++GVK+G+G Y Y
Sbjct: 248 PEWLQEKIKKGEVGVKAGKGIYEYGP 273
>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics,
APC7539, PSI-2, protein structure initiative; 2.46A
{Archaeoglobus fulgidus dsm 4304}
Length = 110
Score = 106 bits (267), Expect = 5e-32
Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+ E G A+P+DIDTA+KLG P GPFELA G + ++ K+F + +F+P
Sbjct: 34 LVEMGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQFGK-KIFEPAKT 92
Query: 61 LNKLVDEGKLGVKSGEG 77
L + E L EG
Sbjct: 93 LKEGKLEELLKAGKAEG 109
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 76.5 bits (189), Expect = 3e-18
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 7 ASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVD 66
ID M+ G+PMGP L D VG DT D + FP+ A++ L +
Sbjct: 519 VDFVRIDKVME-KFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAIDALYE 577
Query: 67 EGKLGVKSGEGFYNYKK 83
+LG K+G+GFY Y+
Sbjct: 578 AKRLGQKNGKGFYAYEA 594
Score = 41.8 bits (99), Expect = 3e-06
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 13/76 (17%)
Query: 7 ASPRDIDTAMKLGAGYPM---GPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
+ + D + G G+P+ G D +G + D + + L+ P L +
Sbjct: 649 ETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQYAE---LGALYHPTAKLRE 705
Query: 64 LVDEGKLGVKSGEGFY 79
+ K+G+ F+
Sbjct: 706 M-------AKNGQSFF 714
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 76.2 bits (188), Expect = 3e-18
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
+ E G A P ID A+ G PMGPF L D VG + + F E
Sbjct: 512 LVECG-ADPYLIDRAIS-KFGMPMGPFRLCDLVGFGVAIATATQFIENFSER--TYKSMI 567
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
+ + ++ + G + +GFY Y
Sbjct: 568 IPLMQEDKRAGEATRKGFYLYDD 590
Score = 45.7 bits (109), Expect = 2e-07
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 7 ASPRDIDTAMKLGAGYPM---GPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
D+D A +G G+P G AD +G +D W K + E FKP L +
Sbjct: 649 VKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGE--FFKPCAFLAE 706
Query: 64 LVDEGK 69
+G
Sbjct: 707 RGSKGV 712
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold,
oxidoreductase; 2.20A {Caenorhabditis elegans}
Length = 460
Score = 69.2 bits (170), Expect = 7e-16
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDA 60
MYE G P ID + G+ MGP +AD G D K + +P
Sbjct: 252 MYEYG-YLPHQIDKIIT-NFGFLMGPMTVADMNGFDV------MEKLK--KENGLEPNPI 301
Query: 61 LNKLVDEGKLGVKSGEGFYNYKK 83
++ + G K+ +GFY Y
Sbjct: 302 EKEMWRLKRYGRKTNKGFYKYDD 324
Score = 51.9 bits (125), Expect = 1e-09
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 7 ASPRDIDTAMKLGAGYPM---GPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDAL-N 62
++ ID LG G+P+ GP G D ++ W P+ + DAL
Sbjct: 380 SNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEPKESAYIVADALKT 439
Query: 63 KLVDEGKLGVKSGEGFYNYK 82
V G G G +++
Sbjct: 440 ANVSTGSSGSSGGHHHHHHH 459
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 67.7 bits (166), Expect = 3e-15
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKP--- 57
+ E G + P D+D ++ G+ MGPF ++D G D I G P P P
Sbjct: 514 LLEEG-SKPEDVDGVLE-EFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRK 571
Query: 58 ------VDALNKLVDEGKLGVKSGEGFYNYKK 83
+ L + G+ G K+G+G+Y Y K
Sbjct: 572 RGNSRYSPLGDMLCEAGRFGQKTGKGWYQYDK 603
Score = 49.2 bits (118), Expect = 1e-08
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 7 ASPRDIDTAMKLGAGYPM---GPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
A P ID G G+P GP A VG T + ++++ P+ P +P D L +
Sbjct: 660 ARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRR 719
Query: 64 LVDEGK 69
LV +G
Sbjct: 720 LVAQGS 725
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme
type 1, L-bifunction enzyme, MFE-1, fatty acid beta
oxidation; 1.90A {Rattus norvegicus}
Length = 463
Score = 65.8 bits (161), Expect = 1e-14
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 7 ASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKP--------- 57
+ P D+D ++ G+ MGPF ++D G D I G P P P
Sbjct: 240 SKPEDVDGVLE-EFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRY 298
Query: 58 VDALNKLVDEGKLGVKSGEGFYNY 81
+ L + G+ G K+G+G+Y Y
Sbjct: 299 SPLGDMLCEAGRFGQKTGKGWYQY 322
Score = 47.6 bits (114), Expect = 3e-08
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 7 ASPRDIDTAMKLGAGYPM---GPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNK 63
A P ID G G+P GP A VG T + ++++ P+ P +P D L +
Sbjct: 381 ARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRR 440
Query: 64 LVDEGK 69
LV +G
Sbjct: 441 LVAQGS 446
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 63.5 bits (155), Expect = 8e-14
Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 10/84 (11%)
Query: 1 MYERGDASPRDIDTAMKLGAGYP---MGPFELADYVGHDTTKFI------IDGWHKKFPE 51
+ E G SP D+D M G G +GP E + + K F
Sbjct: 209 LVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLNAEGMLSYSDRYSEGMKRVLKSFGS 268
Query: 52 NPLFKPVDALNKLVDEGKLGVKSG 75
P F + K+ V +
Sbjct: 269 IPEFSG-ATVEKVNQAMCKKVPAD 291
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine
sulfhydrase, structural genomic structural
genomics/proteomics initiative; HET: PLP; 2.60A {Thermus
thermophilus} SCOP: c.67.1.3
Length = 421
Score = 27.9 bits (63), Expect = 0.35
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 17/43 (39%)
Query: 26 PFEL-ADYVGHDTTKF-----------IIDG----WHK-KFPE 51
P A V H TK+ I+DG W ++P
Sbjct: 192 PLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPL 234
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate,
gamma-elimination, direct sulfhydrylation, CY
metabolism, protein thiocarboxylate, TR; 2.20A
{Wolinella succinogenes}
Length = 430
Score = 27.5 bits (62), Expect = 0.46
Identities = 12/60 (20%), Positives = 16/60 (26%), Gaps = 19/60 (31%)
Query: 18 LGAGYPMGPFEL-ADYVGHDTTKF-----------IIDG----WHKKFPENPLFKPVDAL 61
+ Y + L D +TKF +ID W K P L
Sbjct: 206 MTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEW-KSLPS--LAPYYAKA 262
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: LLP; 2.0A {Thermus
thermophilus}
Length = 412
Score = 26.3 bits (59), Expect = 1.1
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 17/48 (35%)
Query: 20 AGYPMGPFEL-ADYVGHDTTKF-----------IIDG----WHKKFPE 51
AG P A V TK+ ++ W + +P+
Sbjct: 182 AGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELW-RNYPQ 228
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics
center for infectious disease, S mycobacterium, PLP,
schiff base; HET: LLP; 1.85A {Mycobacterium
tuberculosis}
Length = 414
Score = 25.6 bits (57), Expect = 1.8
Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 26 PFEL-ADYVGHDTTKFIIDG 44
F L D V + TK IDG
Sbjct: 213 GFPLGVDVVVYSGTKH-IDG 231
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 25.5 bits (56), Expect = 2.4
Identities = 7/16 (43%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 1 MYERGDASPRDIDTAM 16
+Y RGD P+D++ A+
Sbjct: 318 LY-RGDVVPKDVNAAI 332
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent
enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB:
1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Length = 398
Score = 25.2 bits (56), Expect = 2.6
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 26 PFEL-ADYVGHDTTKFIIDG 44
P +L AD V H TK+ I+G
Sbjct: 196 PLQLGADIVVHSVTKY-ING 214
>2wnh_A 3-phytase; histidine acid phosphatase, hydrolase; 1.68A {Klebsiella
pneumoniae} PDB: 2wni_A 2wu0_A
Length = 418
Score = 25.2 bits (54), Expect = 3.3
Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 16/67 (23%)
Query: 1 MYERGDASPRDIDTAMKLGAG-YPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVD 59
+Y R R TA L G +P + + +PLF+
Sbjct: 91 IYVRASPLQRTRATAQALVDGAFPGCG---------------VAIHYANGDADPLFQTDK 135
Query: 60 ALNKLVD 66
D
Sbjct: 136 FAATQTD 142
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A
{Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A*
1ukj_A* 2o7c_A*
Length = 398
Score = 24.8 bits (55), Expect = 3.9
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 26 PFEL-ADYVGHDTTKFI 41
P EL AD V H TK++
Sbjct: 197 PLELGADLVVHSATKYL 213
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A
{Mycobacterium ulcerans} PDB: 3qi6_A*
Length = 392
Score = 24.8 bits (55), Expect = 4.0
Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 26 PFEL-ADYVGHDTTKFI 41
P L AD V H TTK+I
Sbjct: 198 PLSLGADVVLHSTTKYI 214
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt
pseudomonas, protein binding; 2.50A {Pseudomonas
fluorescens}
Length = 452
Score = 24.7 bits (54), Expect = 4.0
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 4/36 (11%)
Query: 1 MYERGDASPRDIDTAMKL----GAGYPMGPFELADY 32
+Y + S +++ ++ AGYP
Sbjct: 115 LYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLL 150
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis,
pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A
{Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A*
1i43_A*
Length = 445
Score = 24.5 bits (54), Expect = 4.1
Identities = 8/17 (47%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 26 PFEL-ADYVGHDTTKFI 41
L AD V H TKF+
Sbjct: 247 ALALGADLVLHSATKFL 263
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent
enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A
{Escherichia coli} SCOP: c.67.1.3
Length = 386
Score = 24.8 bits (55), Expect = 4.2
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 26 PFEL-ADYVGHDTTKFI 41
P L AD V H TK++
Sbjct: 184 PLALGADLVLHSCTKYL 200
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2;
TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A
{Homo sapiens}
Length = 161
Score = 24.4 bits (53), Expect = 4.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 54 LFKPVDALNKLVDEGKL 70
L K D L KL+DEGKL
Sbjct: 145 LGKICDGLRKLLDEGKL 161
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism
PLP-dependent enzyme family, CYST gamma lyase,
pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae
PV} PDB: 3e6g_A* 3nnp_A*
Length = 400
Score = 24.4 bits (54), Expect = 4.7
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 26 PFEL-ADYVGHDTTKFI 41
P L AD V H TK++
Sbjct: 199 PLSLGADLVVHSATKYL 215
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine
biosynthesis, transsulfurat lyase; HET: PLP; 2.30A
{Arabidopsis thaliana} SCOP: c.67.1.3
Length = 464
Score = 24.6 bits (54), Expect = 4.8
Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 26 PFEL-ADYVGHDTTKFI 41
P EL AD V H TKFI
Sbjct: 264 PLELGADIVMHSATKFI 280
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold,
deacetylase, hydrolase-HYDR inhibitor complex; HET:
B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A*
3q9e_A*
Length = 341
Score = 24.3 bits (53), Expect = 5.2
Identities = 4/23 (17%), Positives = 7/23 (30%)
Query: 31 DYVGHDTTKFIIDGWHKKFPENP 53
D+ + + G E P
Sbjct: 8 DHKLRNAKTELYGGELVPPFEAP 30
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba
histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A*
3aeo_A* 3aep_A*
Length = 389
Score = 24.4 bits (54), Expect = 5.4
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 26 PFEL-ADYVGHDTTKFI 41
P EL AD H +K+I
Sbjct: 191 PLELGADIALHSVSKYI 207
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC,
inhibitor, structural genom stockholm, structural
genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB:
2nmp_A* 3elp_B
Length = 403
Score = 24.4 bits (54), Expect = 5.5
Identities = 6/17 (35%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 26 PFEL-ADYVGHDTTKFI 41
P L AD + TK++
Sbjct: 199 PLALGADISMYSATKYM 215
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET:
PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Length = 393
Score = 24.4 bits (54), Expect = 5.8
Identities = 8/17 (47%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 26 PFEL-ADYVGHDTTKFI 41
P AD V H TK+I
Sbjct: 189 PLNFGADIVVHSATKYI 205
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F,
structural GE oxidoreductase; HET: NDP; 1.60A
{Escherichia coli} SCOP: c.1.7.1
Length = 346
Score = 24.0 bits (53), Expect = 5.9
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 45 WHKKFPENPLFKPVDALNKLVDEGK 69
W P L +DAL + GK
Sbjct: 148 WTDSAPAVSLLDTLDALAEYQRAGK 172
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis}
SCOP: c.67.1.3
Length = 331
Score = 24.0 bits (53), Expect = 6.8
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 1/17 (5%)
Query: 26 PFEL-ADYVGHDTTKFI 41
P +L D V H TK+I
Sbjct: 131 PLDLGVDIVVHSATKYI 147
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP:
a.4.5.13
Length = 90
Score = 23.7 bits (51), Expect = 7.0
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 39 KFIIDGWHKKFPENPLFKPVDALNKLVDEGKLGVKSGEG 77
K+I + + K ++ +L+ G L G G
Sbjct: 34 KYIKSHYKVGHNADLQIKL--SIRRLLAAGVLKQTKGVG 70
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent
enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas
vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Length = 404
Score = 24.0 bits (53), Expect = 7.3
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 26 PFEL-ADYVGHDTTKFI 41
P + D V H TK+I
Sbjct: 195 PVDFGVDVVVHSATKYI 211
>3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- protein
structure initiative, midwest center for structural
genomics, MCSG; 1.96A {Streptococcus pneumoniae}
Length = 123
Score = 23.6 bits (51), Expect = 7.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 51 ENPLFKPVDALNKLVDE 67
++PL + + L+KLVD
Sbjct: 89 DDPLMQEIRRLDKLVDW 105
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 23.9 bits (52), Expect = 7.8
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 4 RGDASPRDIDTAM 16
RGD +D+D M
Sbjct: 318 RGDVKAKDVDENM 330
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 23.5 bits (51), Expect = 9.8
Identities = 2/13 (15%), Positives = 7/13 (53%)
Query: 4 RGDASPRDIDTAM 16
+G+ P + ++
Sbjct: 325 QGEVDPTQVHKSL 337
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.142 0.441
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,381,927
Number of extensions: 72593
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 50
Length of query: 83
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 32
Effective length of database: 5,277,822
Effective search space: 168890304
Effective search space used: 168890304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)