Query psy3941
Match_columns 83
No_of_seqs 129 out of 1144
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 21:15:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ctv_A HBD-10, 3-hydroxyacyl-C 99.9 1.2E-28 4.2E-33 144.0 0.3 76 1-77 34-109 (110)
2 3mog_A Probable 3-hydroxybutyr 99.9 5.8E-27 2E-31 164.3 7.7 82 1-82 205-286 (483)
3 1f0y_A HCDH, L-3-hydroxyacyl-C 99.9 5.1E-27 1.7E-31 155.5 6.9 81 1-82 221-302 (302)
4 4e12_A Diketoreductase; oxidor 99.9 6.8E-27 2.3E-31 154.0 1.5 77 1-81 207-283 (283)
5 1zej_A HBD-9, 3-hydroxyacyl-CO 99.9 2.2E-26 7.7E-31 153.2 3.7 81 1-83 190-273 (293)
6 3k6j_A Protein F01G10.3, confi 99.9 1E-23 3.5E-28 147.3 5.7 71 3-83 254-324 (460)
7 1wdk_A Fatty oxidation complex 99.9 9.4E-24 3.2E-28 153.4 3.7 78 1-82 514-593 (715)
8 2wtb_A MFP2, fatty acid multif 99.9 1.8E-23 6E-28 152.2 4.8 77 1-82 512-589 (725)
9 3zwc_A Peroxisomal bifunctiona 99.9 5.6E-23 1.9E-27 149.9 4.3 81 1-83 514-603 (742)
10 1zcj_A Peroxisomal bifunctiona 99.8 3.9E-22 1.3E-26 139.1 3.6 80 1-82 235-323 (463)
11 3mog_A Probable 3-hydroxybutyr 99.8 3.7E-21 1.3E-25 135.0 4.8 73 1-74 404-476 (483)
12 3zwc_A Peroxisomal bifunctiona 99.8 4.3E-19 1.5E-23 129.5 6.4 82 1-82 653-738 (742)
13 3k6j_A Protein F01G10.3, confi 99.7 7.7E-19 2.6E-23 122.8 2.9 75 1-76 373-452 (460)
14 1zcj_A Peroxisomal bifunctiona 99.7 6.8E-18 2.3E-22 117.7 6.3 69 1-69 374-446 (463)
15 2wtb_A MFP2, fatty acid multif 99.6 4.9E-16 1.7E-20 113.3 4.8 71 1-80 642-716 (725)
16 1wdk_A Fatty oxidation complex 99.6 6.5E-16 2.2E-20 112.4 5.1 70 1-80 642-715 (715)
17 3ado_A Lambda-crystallin; L-gu 99.2 2.5E-12 8.7E-17 86.4 1.9 41 1-41 209-252 (319)
18 2dpo_A L-gulonate 3-dehydrogen 98.9 7.2E-10 2.5E-14 74.3 3.1 64 1-66 209-282 (319)
19 2ewd_A Lactate dehydrogenase,; 94.7 0.0063 2.1E-07 40.2 0.2 31 2-35 199-229 (317)
20 2i76_A Hypothetical protein; N 87.7 0.75 2.6E-05 29.4 4.1 37 10-46 200-237 (276)
21 3d1l_A Putative NADP oxidoredu 77.4 0.35 1.2E-05 30.6 -0.6 40 4-44 199-247 (266)
22 2w84_A Peroxisomal membrane pr 61.9 4.5 0.00015 21.2 1.7 23 7-29 47-69 (70)
23 3l32_A Phosphoprotein; antipar 42.4 5.6 0.00019 18.9 0.1 8 73-80 21-28 (45)
24 3a8g_B NitrIle hydratase subun 39.4 11 0.00037 23.9 1.1 18 1-18 84-101 (212)
25 2zzd_B Thiocyanate hydrolase s 33.6 15 0.00052 22.1 1.0 17 1-17 120-136 (157)
26 1rxq_A YFIT; nickel-binding, h 33.2 25 0.00085 20.1 2.0 22 20-41 6-27 (178)
27 3hht_A NitrIle hydratase alpha 30.2 18 0.00061 22.9 1.0 27 1-28 36-62 (216)
28 3neu_A LIN1836 protein; struct 26.0 17 0.00057 20.4 0.3 23 57-79 54-76 (125)
29 1ugp_A NitrIle hydratase alpha 26.0 18 0.0006 22.7 0.4 27 1-28 27-53 (203)
30 1tzy_D Histone H4-VI; histone- 25.0 33 0.0011 18.8 1.4 16 7-23 82-97 (103)
31 3hht_B NitrIle hydratase beta 25.0 20 0.00069 22.9 0.6 23 1-23 84-106 (229)
32 3tqn_A Transcriptional regulat 24.8 18 0.00061 19.8 0.3 22 58-79 51-72 (113)
33 1id3_B Histone H4; nucleosome 24.1 43 0.0015 18.4 1.8 17 7-24 81-97 (102)
34 3ff5_A PEX14P, peroxisomal bio 23.3 47 0.0016 16.3 1.6 12 7-18 42-53 (54)
35 4f3h_A Fimxeal, putative uncha 23.2 38 0.0013 20.8 1.6 27 1-27 216-242 (250)
36 2b3g_B Cellular tumor antigen 22.5 43 0.0015 13.9 1.2 10 7-16 13-22 (28)
37 2yfw_B Histone H4, H4; cell cy 22.5 37 0.0013 18.7 1.3 16 7-23 82-97 (103)
38 3w3e_A Cotyledoneous yieldin-l 22.5 29 0.001 22.3 1.0 24 59-82 10-33 (242)
39 3edp_A LIN2111 protein; APC883 22.0 31 0.0011 21.5 1.0 25 55-79 48-72 (236)
40 2ek5_A Predicted transcription 21.5 28 0.00096 19.7 0.7 23 57-79 45-67 (129)
41 4ham_A LMO2241 protein; struct 21.5 23 0.00078 20.0 0.3 24 56-79 54-77 (134)
42 1ugp_B NitrIle hydratase beta 21.1 27 0.00094 22.2 0.6 25 1-25 80-104 (226)
43 1ydm_A Hypothetical protein YQ 21.0 23 0.0008 21.3 0.3 7 74-80 135-141 (187)
44 3ufc_X CAS6, putative uncharac 21.0 52 0.0018 20.3 1.9 21 57-78 214-234 (243)
45 3s83_A Ggdef family protein; s 20.8 46 0.0016 20.5 1.6 27 1-27 212-238 (259)
46 3ic7_A Putative transcriptiona 20.5 29 0.00098 19.5 0.6 26 55-80 50-75 (126)
47 3by6_A Predicted transcription 20.5 25 0.00085 19.8 0.3 23 57-79 52-74 (126)
48 1ldd_A APC2WHB, anaphase promo 20.3 60 0.0021 16.9 1.8 48 24-71 14-64 (74)
49 1g2r_A Hypothetical cytosolic 20.3 30 0.001 19.1 0.6 12 69-80 41-52 (100)
50 3hy3_A 5-formyltetrahydrofolat 20.2 21 0.00073 21.8 -0.0 7 74-80 148-154 (203)
51 2xf7_A GP23.1; viral protein; 20.2 59 0.002 15.4 1.5 20 2-21 28-47 (51)
No 1
>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304}
Probab=99.94 E-value=1.2e-28 Score=143.99 Aligned_cols=76 Identities=38% Similarity=0.599 Sum_probs=70.9
Q ss_pred CcccCCCCHHHHHHHHHhccCCCcchhhhhhhhcHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHCCCCCcccccc
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVDEGKLGVKSGEG 77 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p~GPf~~~D~vGld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~G 77 (83)
|++|||+||+|||.++++|+|||+|||+++|.+|+|++.++++.+++.+++ ++|+|++++++|+++|++|+|||+|
T Consensus 34 ll~eGva~~~dID~a~~~g~G~p~GPf~~~D~~Gld~~~~~~~~l~~~~g~-~~~~p~~~L~~~v~~G~lG~k~g~G 109 (110)
T 3ctv_A 34 LVEMGVATPQDIDTAIKLGLNRPFGPFELAKQFGAEQIAKRLEELAKQFGK-KIFEPAKTLKEGKLEELLKAGKAEG 109 (110)
T ss_dssp HHHTTSSCHHHHHHHHHHHTTCSSCHHHHHHHHCHHHHHHHHHHHHHHHCC-GGGSCCHHHHTTTHHHHHHHHHHC-
T ss_pred HHHhCCCCHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHhCC-CcCCCCHHHHHHHHcCCCCccCCCC
Confidence 478999999999999999999999999999999999999999999988875 4788999999999999999999998
No 2
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=99.94 E-value=5.8e-27 Score=164.33 Aligned_cols=82 Identities=38% Similarity=0.626 Sum_probs=75.9
Q ss_pred CcccCCCCHHHHHHHHHhccCCCcchhhhhhhhcHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHCCCCCccccccccc
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVDEGKLGVKSGEGFYN 80 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p~GPf~~~D~vGld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~GfY~ 80 (83)
|+++|++||++||.+++.++|||+|||+++|.+|+|+++++.+.+++.+..++++.+++++++|+++|++|+|||+|||+
T Consensus 205 l~~~g~~~~~~id~a~~~~~G~p~GP~~l~D~~Gld~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~k~g~GfY~ 284 (483)
T 3mog_A 205 ALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIGQDVNFAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYD 284 (483)
T ss_dssp HHHTTCSCHHHHHHHHHHTTCCSSCHHHHHHHHCHHHHHHHHHHHHHHTTSCGGGCCCHHHHHHHHTTCCBGGGTBSSSB
T ss_pred HHHhCCCCHHHHHHHHHhcCCCCCCHHHHHHHhchHHHHHHHHHHHHHhcCCCccCchHHHHHHHHCCCCceeCCCEeEE
Confidence 46889899999999999999999999999999999999999999988864435788899999999999999999999999
Q ss_pred cC
Q psy3941 81 YK 82 (83)
Q Consensus 81 y~ 82 (83)
|+
T Consensus 285 y~ 286 (483)
T 3mog_A 285 WR 286 (483)
T ss_dssp TT
T ss_pred CC
Confidence 96
No 3
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=99.94 E-value=5.1e-27 Score=155.46 Aligned_cols=81 Identities=73% Similarity=1.243 Sum_probs=75.3
Q ss_pred CcccCCCCHHHHHHHHHhccCCCcchhhhhhhhcHHHHHHHHHHHHHhC-CCCCCCCchHHHHHHHHCCCCCcccccccc
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKF-PENPLFKPVDALNKLVDEGKLGVKSGEGFY 79 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p~GPf~~~D~vGld~~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~g~~G~k~g~GfY 79 (83)
|+++|++++++||.+++.++|||+|||+++|.+|+|++.++++.+++.+ ++ ++|+|++++++|+++|++|+|||+|||
T Consensus 221 l~~~g~~~~~~id~~~~~g~g~p~GP~~~~D~~Gld~~~~~~~~l~~~~~~~-~~~~~~~~l~~~~~~g~~G~k~g~Gfy 299 (302)
T 1f0y_A 221 LYERGDASKEDIDTAMKLGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAEN-PLHQPSPSLNKLVAENKFGKKTGEGFY 299 (302)
T ss_dssp HHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHHHHHTTTTC-GGGCCCHHHHHHHHTTCCBTTTTBSSS
T ss_pred HHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCC-CccCcCHHHHHHHHcCCCccccCcEee
Confidence 4678888999999999999999999999999999999999999999888 54 458899999999999999999999999
Q ss_pred ccC
Q psy3941 80 NYK 82 (83)
Q Consensus 80 ~y~ 82 (83)
+|+
T Consensus 300 ~y~ 302 (302)
T 1f0y_A 300 KYK 302 (302)
T ss_dssp BCC
T ss_pred eCC
Confidence 995
No 4
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=99.92 E-value=6.8e-27 Score=154.04 Aligned_cols=77 Identities=38% Similarity=0.619 Sum_probs=68.3
Q ss_pred CcccCCCCHHHHHHHHHhccCCCcchhhhhhhhcHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHCCCCCccccccccc
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVDEGKLGVKSGEGFYN 80 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p~GPf~~~D~vGld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~GfY~ 80 (83)
|+++|+++|++||.+++.++|+|+|||+++|.+|||++.++.++ ...+ +++.|++++++|+++|++|+|||+|||+
T Consensus 207 l~~~g~~~~~~id~~~~~~~g~~~Gp~~~~D~~Gld~~~~~~~~---~~~~-~~~~~~~~~~~~v~~g~lG~k~g~Gfy~ 282 (283)
T 4e12_A 207 LLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVGLTTAYNISSV---SGPK-QREFAAYLKENYIDKGKLGLATGEGFYR 282 (283)
T ss_dssp HHHTTSCCHHHHHHHHHHHHCCSSCHHHHHHHHCHHHHHHHHHT---SCHH-HHHHHHHHHHHTGGGTCCBGGGTBSSSB
T ss_pred HHHhCCCCHHHHHHHHHhccCCCcCHHHHHHhccHHHHHHHHhc---cccC-cccCchHHHHHHHHCCCCceeCCeEeec
Confidence 46889899999999999999999999999999999999999883 2221 2456889999999999999999999999
Q ss_pred c
Q psy3941 81 Y 81 (83)
Q Consensus 81 y 81 (83)
|
T Consensus 283 y 283 (283)
T 4e12_A 283 Y 283 (283)
T ss_dssp C
T ss_pred C
Confidence 8
No 5
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}
Probab=99.92 E-value=2.2e-26 Score=153.20 Aligned_cols=81 Identities=33% Similarity=0.583 Sum_probs=75.3
Q ss_pred CcccCCCCHHHHHHHHHhccCCCc---chhhhhhhhcHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHCCCCCcccccc
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYPM---GPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVDEGKLGVKSGEG 77 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p~---GPf~~~D~vGld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~G 77 (83)
|+++|+ ||++||.+++.++|+|+ |||+++|.+|+|++.++++.+++.+++ ++|+|++++++|+++|++|+|||+|
T Consensus 190 l~~~Gv-~~e~id~~~~~g~g~~~~~~GP~~l~D~~Gld~~~~~~~~l~~~~~~-~~~~~~~~l~~~v~~G~lG~Ktg~G 267 (293)
T 1zej_A 190 MIEEGV-RAEDVDRVWKHHLGLLYTLFGPLGNLDYIGLDVAYYASLYLYKRFGD-EKFKPPEWLQEKIKKGEVGVKAGKG 267 (293)
T ss_dssp HHHHTC-CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC-GGGSCCHHHHHHHHTTCCBGGGTBS
T ss_pred HHHhCC-CHHHHHHHHHhcCCCCCCCCCHHHHHHHhchHHHHHHHHHHHHHcCC-CcCCCCHHHHHHHHCCCCccccCCE
Confidence 467897 99999999999999999 999999999999999999999988875 4788999999999999999999999
Q ss_pred ccccCC
Q psy3941 78 FYNYKK 83 (83)
Q Consensus 78 fY~y~~ 83 (83)
||+|++
T Consensus 268 fy~y~~ 273 (293)
T 1zej_A 268 IYEYGP 273 (293)
T ss_dssp SSBCCT
T ss_pred eeecCc
Confidence 999963
No 6
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=99.89 E-value=1e-23 Score=147.29 Aligned_cols=71 Identities=28% Similarity=0.510 Sum_probs=63.8
Q ss_pred ccCCCCHHHHHHHHHhccCCCcchhhhhhhhcHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHCCCCCccccccccccC
Q psy3941 3 ERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVDEGKLGVKSGEGFYNYK 82 (83)
Q Consensus 3 ~egv~~~~~ID~a~~~g~G~p~GPf~~~D~vGld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~GfY~y~ 82 (83)
++| ++|++||.+++ ++|||||||+++|.+|||++.++.+.+ . .++++++++|+++|++|+|||+|||+|+
T Consensus 254 ~~G-a~~e~ID~a~~-~~G~pmGPf~l~D~vGlD~~~~i~~~~----~----~~~~~~l~~~v~~G~lG~KtG~GFY~y~ 323 (460)
T 3k6j_A 254 EYG-YLPHQIDKIIT-NFGFLMGPMTVADMNGFDVMEKLKKEN----G----LEPNPIEKEMWRLKRYGRKTNKGFYKYD 323 (460)
T ss_dssp TSC-CCHHHHHHHHH-HHTBSSCHHHHHHHHCTHHHHHHHHHS----C----CCCCHHHHHHHHTTCCBGGGTBSSSEEC
T ss_pred HcC-CCHHHHHHHHH-HcCCCcCHHHHHHHhchHHHHHHHHHh----c----cCchHHHHHHHHCCCCeeecCCEEEECC
Confidence 677 89999999998 899999999999999999999998765 2 2356899999999999999999999996
Q ss_pred C
Q psy3941 83 K 83 (83)
Q Consensus 83 ~ 83 (83)
+
T Consensus 324 ~ 324 (460)
T 3k6j_A 324 D 324 (460)
T ss_dssp T
T ss_pred C
Confidence 3
No 7
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=99.88 E-value=9.4e-24 Score=153.38 Aligned_cols=78 Identities=37% Similarity=0.588 Sum_probs=71.9
Q ss_pred CcccCCCCHHHHHHHHHhccCCCcchhhhhhhhcHHHHHHHHHHHHHhCCCCCCCCch--HHHHHHHHCCCCCccccccc
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPV--DALNKLVDEGKLGVKSGEGF 78 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p~GPf~~~D~vGld~~~~~~~~l~~~~~~~~~~~~~--~~l~~~~~~g~~G~k~g~Gf 78 (83)
|+++| +++++||.++ .++|+|+|||+++|.+|+|++.++.+.+++.+++ +|.++ +++++|+++|++|+|||+||
T Consensus 514 l~~~G-~~~~~id~~~-~~~G~p~Gp~~l~D~vGld~~~~i~~~~~~~~~~--~~~~~~~~~l~~~v~~g~lG~k~g~Gf 589 (715)
T 1wdk_A 514 LVSAG-VDFVRIDKVM-EKFGWPMGPAYLMDVVGIDTGHHGRDVMAEGFPD--RMKDDRRSAIDALYEAKRLGQKNGKGF 589 (715)
T ss_dssp HHHTT-CCHHHHHHHH-HHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHCHH--HHCCSSCCHHHHHHHTTCCBTTTTBSS
T ss_pred HHHCC-CCHHHHHHHH-HHcCCCCCHHHHHHHhhHHHHHHHHHHHHHhcCC--ccCCChHHHHHHHHhCchhhhcCCcEE
Confidence 46788 7999999999 6899999999999999999999999999988865 67777 89999999999999999999
Q ss_pred cccC
Q psy3941 79 YNYK 82 (83)
Q Consensus 79 Y~y~ 82 (83)
|+|+
T Consensus 590 Y~y~ 593 (715)
T 1wdk_A 590 YAYE 593 (715)
T ss_dssp SEEC
T ss_pred Eecc
Confidence 9994
No 8
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=99.88 E-value=1.8e-23 Score=152.18 Aligned_cols=77 Identities=32% Similarity=0.572 Sum_probs=57.7
Q ss_pred CcccCCCCHHHHHHHHHhccCCCcchhhhhhhhcHHHHHHHHHHHHHhCCCCCC-CCchHHHHHHHHCCCCCcccccccc
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPL-FKPVDALNKLVDEGKLGVKSGEGFY 79 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p~GPf~~~D~vGld~~~~~~~~l~~~~~~~~~-~~~~~~l~~~~~~g~~G~k~g~GfY 79 (83)
|+++| ++|++||.++ .++|||||||+++|.+|+|++.++.+.+++.+++ + |.+ +++++|+++|++|+|||+|||
T Consensus 512 l~~~G-~~~e~id~~~-~~~g~p~Gp~~l~D~vGld~~~~i~~~~~~~~~~--~~~~~-~~l~~~v~~g~lG~k~g~GfY 586 (725)
T 2wtb_A 512 LVECG-ADPYLIDRAI-SKFGMPMGPFRLCDLVGFGVAIATATQFIENFSE--RTYKS-MIIPLMQEDKRAGEATRKGFY 586 (725)
T ss_dssp HHHTT-CCHHHHHHHH-HHHTCSSCHHHHHHHHCHHHHHHHHHHHHHHSGG--GCCCC-THHHHHHTTC-----------
T ss_pred HHHCC-CCHHHHHHHH-HHcCCCCCHHHHHHHhchHHHHHHHHHHHHhcCC--ccCCh-HHHHHHHHCCCceecCCceeE
Confidence 46788 7999999999 6999999999999999999999999999988875 4 777 899999999999999999999
Q ss_pred ccC
Q psy3941 80 NYK 82 (83)
Q Consensus 80 ~y~ 82 (83)
+|+
T Consensus 587 ~y~ 589 (725)
T 2wtb_A 587 LYD 589 (725)
T ss_dssp ---
T ss_pred eCC
Confidence 994
No 9
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=99.87 E-value=5.6e-23 Score=149.88 Aligned_cols=81 Identities=32% Similarity=0.594 Sum_probs=68.6
Q ss_pred CcccCCCCHHHHHHHHHhccCCCcchhhhhhhhcHHHHHHHHHHHHHhCCCCC---------CCCchHHHHHHHHCCCCC
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENP---------LFKPVDALNKLVDEGKLG 71 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p~GPf~~~D~vGld~~~~~~~~l~~~~~~~~---------~~~~~~~l~~~~~~g~~G 71 (83)
|++|| +++++||.+++ ++|||+|||+++|.+|||++.++.+++....++.. .+.+++++++|+++|++|
T Consensus 514 l~~eG-~~~~~id~a~~-~~G~pmGPf~l~D~vGlDv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~mv~~G~lG 591 (742)
T 3zwc_A 514 LLEEG-SKPEDVDGVLE-EFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFG 591 (742)
T ss_dssp HHHTT-CCHHHHHHHHH-HHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSTTSCTTCCTTEETTEECCCHHHHHHTTTCCB
T ss_pred HHHcC-CCHHHHHHHHH-HcCCCCChHHHHHHhCHHHHHHHHHHHHhhCcccCccchhhhcccccccHHHHHHHHCCCcc
Confidence 47888 89999999998 69999999999999999999999998765443211 123567999999999999
Q ss_pred ccccccccccCC
Q psy3941 72 VKSGEGFYNYKK 83 (83)
Q Consensus 72 ~k~g~GfY~y~~ 83 (83)
+|||+|||+|++
T Consensus 592 ~KtG~GFY~Y~~ 603 (742)
T 3zwc_A 592 QKTGKGWYQYDK 603 (742)
T ss_dssp GGGTBSSSEESS
T ss_pred ccCCCeeEECCC
Confidence 999999999964
No 10
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=99.84 E-value=3.9e-22 Score=139.09 Aligned_cols=80 Identities=30% Similarity=0.603 Sum_probs=66.2
Q ss_pred CcccCCCCHHHHHHHHHhccCCCcchhhhhhhhcHHHHHHHHHHHH---HhCC------CCCCCCchHHHHHHHHCCCCC
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWH---KKFP------ENPLFKPVDALNKLVDEGKLG 71 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p~GPf~~~D~vGld~~~~~~~~l~---~~~~------~~~~~~~~~~l~~~~~~g~~G 71 (83)
|+++| +++++||.+++ ++|+|+|||+++|.+|+|++.++.+.+. +.++ ....+++++++++|+++|++|
T Consensus 235 l~~~G-~~~~~id~~~~-~~g~p~Gp~~l~D~~GlD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~g~lG 312 (463)
T 1zcj_A 235 LLEEG-SKPEDVDGVLE-EFGFKMGPFRVSDLAGLDVGWKIRKGQGLTGPSLPPGTPVRKRGNSRYSPLGDMLCEAGRFG 312 (463)
T ss_dssp HHHTT-CCHHHHHHHHH-HHTCSSCHHHHHHHHCHHHHHHHHHHTTSSSSCCCTTCCTTEETTEECCTHHHHHHHTTCCB
T ss_pred HHHcC-CCHHHHHHHHH-HcCCCCcHHHHHHHcchHHHHHHHHHHhhhcccccccccccccccccchHHHHHHHHCCCCe
Confidence 35788 89999999998 8999999999999999999999998762 1110 001223468999999999999
Q ss_pred ccccccccccC
Q psy3941 72 VKSGEGFYNYK 82 (83)
Q Consensus 72 ~k~g~GfY~y~ 82 (83)
+|||+|||+|+
T Consensus 313 ~k~g~Gfy~y~ 323 (463)
T 1zcj_A 313 QKTGKGWYQYD 323 (463)
T ss_dssp GGGTBSSEEES
T ss_pred eecCCeeccCC
Confidence 99999999994
No 11
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}
Probab=99.82 E-value=3.7e-21 Score=134.97 Aligned_cols=73 Identities=26% Similarity=0.443 Sum_probs=66.2
Q ss_pred CcccCCCCHHHHHHHHHhccCCCcchhhhhhhhcHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHCCCCCccc
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYPMGPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVDEGKLGVKS 74 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p~GPf~~~D~vGld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~ 74 (83)
||+|||+||+|||.+|+.|+|||+|||+++|.+|+|++.++++.+++.+++ ++|+|+++|.+|+++|++|...
T Consensus 404 ~l~eGvas~~diD~a~~~G~G~P~GPl~~~D~~Gld~~~~~~~~l~~~~g~-~~~~p~~lL~~~v~~G~~~~~~ 476 (483)
T 3mog_A 404 ALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQHHYGE-ERYRPCSLLRQRALLESGYESE 476 (483)
T ss_dssp HHHTTSSCHHHHHHHHHHHSCCSSCHHHHHHHHCHHHHHHHHHHHHHHHCC-GGGCCCHHHHHHHHHHTCC---
T ss_pred HHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCCHHHHHHHHcCCCCCCC
Confidence 579999999999999999999999999999999999999999999999975 5899999999999999866543
No 12
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=99.77 E-value=4.3e-19 Score=129.55 Aligned_cols=82 Identities=29% Similarity=0.449 Sum_probs=76.5
Q ss_pred CcccCCC-CHHHHHHHHHhccCCCc---chhhhhhhhcHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHCCCCCccccc
Q psy3941 1 MYERGDA-SPRDIDTAMKLGAGYPM---GPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVDEGKLGVKSGE 76 (83)
Q Consensus 1 ll~egv~-~~~~ID~a~~~g~G~p~---GPf~~~D~vGld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~ 76 (83)
+++|||+ +|+|||.++++|+|||. |||+++|.+|++.+++.++.+++.+++.++|+|+++|.+|+++|+...+.++
T Consensus 653 ~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~G~~~~v~~l~~l~~~~g~~~~~~P~~~L~~ma~~G~~~f~~~~ 732 (742)
T 3zwc_A 653 ILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGSPPLKEWQ 732 (742)
T ss_dssp HHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTCCCGGGHH
T ss_pred HhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCHHHHHHHHcCCCcccccc
Confidence 4789997 89999999999999998 9999999999999999999999999875689999999999999999999999
Q ss_pred cccccC
Q psy3941 77 GFYNYK 82 (83)
Q Consensus 77 GfY~y~ 82 (83)
+||.+.
T Consensus 733 ~~~~~~ 738 (742)
T 3zwc_A 733 SLAGPH 738 (742)
T ss_dssp HHHSTT
T ss_pred cccCCC
Confidence 999764
No 13
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=99.73 E-value=7.7e-19 Score=122.76 Aligned_cols=75 Identities=25% Similarity=0.364 Sum_probs=59.8
Q ss_pred CcccCCC-CHHHHHHHHHhccCCCc---chhhhhhhhcHHHHHHHHHHHHHhCCCCCC-CCchHHHHHHHHCCCCCcccc
Q psy3941 1 MYERGDA-SPRDIDTAMKLGAGYPM---GPFELADYVGHDTTKFIIDGWHKKFPENPL-FKPVDALNKLVDEGKLGVKSG 75 (83)
Q Consensus 1 ll~egv~-~~~~ID~a~~~g~G~p~---GPf~~~D~vGld~~~~~~~~l~~~~~~~~~-~~~~~~l~~~~~~g~~G~k~g 75 (83)
+|+|||+ +|+|||.++++|+|||. |||+++|.+|++.+.+.++.+++.+++ .+ |+|+++|.+|+++|++|.|+|
T Consensus 373 ~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G~~~~~~~l~~l~~~~g~-~~~~~p~~~L~~~a~~g~~~~~~~ 451 (460)
T 3k6j_A 373 CIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEGLDKIANMLVHWSSLEPK-ESAYIVADALKTANVSTGSSGSSG 451 (460)
T ss_dssp HHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBSSHHHHHHHHHHHHHCTT-CGGGSCCHHHHHHC----------
T ss_pred HHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhCHHHHHHHHHHHHHHhCC-CCCCCCCHHHHHHHHcCCCccccC
Confidence 4789998 79999999999999998 999999999999999999999999987 23 899999999999999999998
Q ss_pred c
Q psy3941 76 E 76 (83)
Q Consensus 76 ~ 76 (83)
.
T Consensus 452 ~ 452 (460)
T 3k6j_A 452 G 452 (460)
T ss_dssp -
T ss_pred C
Confidence 5
No 14
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}
Probab=99.72 E-value=6.8e-18 Score=117.74 Aligned_cols=69 Identities=33% Similarity=0.548 Sum_probs=63.7
Q ss_pred CcccCCC-CHHHHHHHHHhccCCCc---chhhhhhhhcHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHCCC
Q psy3941 1 MYERGDA-SPRDIDTAMKLGAGYPM---GPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVDEGK 69 (83)
Q Consensus 1 ll~egv~-~~~~ID~a~~~g~G~p~---GPf~~~D~vGld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~ 69 (83)
+++|||+ +|+|||.+|++|+|||+ |||+++|.+|+++++++++.+++.+++.++|+|+++|.+|+++|+
T Consensus 374 ~l~eGIa~~~~dID~a~~~G~G~p~~~gGP~~~~D~~Gl~~~~~~~~~l~~~~g~~~~~~p~~lL~~~v~~G~ 446 (463)
T 1zcj_A 374 ILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVGLPTVLEKLQKYYRQNPDIPQLEPSDYLRRLVAQGS 446 (463)
T ss_dssp HHHTTSBSCHHHHHHHHHHHSCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHCTTCGGGSCCHHHHHHHHTTC
T ss_pred HHHhCCCCCHHHHHHHHHhCCCCCCCCcChHHHHHHhCHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHcCC
Confidence 4789998 69999999999999998 999999999999999999999999875237899999999999986
No 15
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=99.60 E-value=4.9e-16 Score=113.25 Aligned_cols=71 Identities=30% Similarity=0.478 Sum_probs=65.4
Q ss_pred CcccCCC-CHHHHHHHHHhccCCCc---chhhhhhhhcHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHCCCCCccccc
Q psy3941 1 MYERGDA-SPRDIDTAMKLGAGYPM---GPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVDEGKLGVKSGE 76 (83)
Q Consensus 1 ll~egv~-~~~~ID~a~~~g~G~p~---GPf~~~D~vGld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~ 76 (83)
+++|||+ +|+|||.+|++|+|||. |||+++|.+|++.+.+.++.+++.+++ +|+|+++|.+|+++|+
T Consensus 642 ~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~~~~~g~--~~~p~~~l~~~~~~g~------- 712 (725)
T 2wtb_A 642 VFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIGSKYIYSRLDEWSKAYGE--FFKPCAFLAERGSKGV------- 712 (725)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHCHHHHHHHHHHHHHHHCG--GGCCCHHHHHHHHHTC-------
T ss_pred HHhcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHHHHHcCC--CCCCCHHHHHHHHcCC-------
Confidence 4789997 99999999999999999 999999999999999999999988885 7999999999998874
Q ss_pred cccc
Q psy3941 77 GFYN 80 (83)
Q Consensus 77 GfY~ 80 (83)
+||.
T Consensus 713 ~f~~ 716 (725)
T 2wtb_A 713 LLSA 716 (725)
T ss_dssp CSSS
T ss_pred Cccc
Confidence 7875
No 16
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=99.60 E-value=6.5e-16 Score=112.44 Aligned_cols=70 Identities=21% Similarity=0.538 Sum_probs=64.1
Q ss_pred CcccCCC-CHHHHHHHHHhccCCCc---chhhhhhhhcHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHCCCCCccccc
Q psy3941 1 MYERGDA-SPRDIDTAMKLGAGYPM---GPFELADYVGHDTTKFIIDGWHKKFPENPLFKPVDALNKLVDEGKLGVKSGE 76 (83)
Q Consensus 1 ll~egv~-~~~~ID~a~~~g~G~p~---GPf~~~D~vGld~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~g~~G~k~g~ 76 (83)
+++|||+ +|+|||.+|++|+|||. |||+++|.+|++.+.+.++.+ +.+++ +|+|+++|.+|+++|+
T Consensus 642 ~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G~~~~~~~~~~~-~~~g~--~~~p~~~l~~~~~~g~------- 711 (715)
T 1wdk_A 642 CLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIGVAEFVALADQY-AELGA--LYHPTAKLREMAKNGQ------- 711 (715)
T ss_dssp HHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHCHHHHHHHHHHT-GGGCG--GGCCCHHHHHHHHTTC-------
T ss_pred HHhcCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhCHHHHHHHHHHH-HhcCC--CCCCCHHHHHHHHcCC-------
Confidence 4789997 99999999999999999 999999999999999999999 77874 7999999999999885
Q ss_pred cccc
Q psy3941 77 GFYN 80 (83)
Q Consensus 77 GfY~ 80 (83)
+||+
T Consensus 712 ~f~~ 715 (715)
T 1wdk_A 712 SFFG 715 (715)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7873
No 17
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=99.22 E-value=2.5e-12 Score=86.43 Aligned_cols=41 Identities=29% Similarity=0.507 Sum_probs=36.9
Q ss_pred CcccCCCCHHHHHHHHHhccCCC---cchhhhhhhhcHHHHHHH
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYP---MGPFELADYVGHDTTKFI 41 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p---~GPf~~~D~vGld~~~~~ 41 (83)
|++||++|+++||.+++.|+|+| ||||+++|.+|++....+
T Consensus 209 lv~eGvas~edID~~~~~g~g~~~a~mGPf~~~Dl~G~~~~~~~ 252 (319)
T 3ado_A 209 LVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLNAEGMLSYC 252 (319)
T ss_dssp HHHTTSSCHHHHHHHHHTTHHHHHTTSCHHHHHHHTTTSHHHHH
T ss_pred HHHhCCCCHHHHHHHHHhCCCCCCCCcchhhhhhhcCccHHHHH
Confidence 57899999999999999999987 899999999998876544
No 18
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=98.89 E-value=7.2e-10 Score=74.31 Aligned_cols=64 Identities=28% Similarity=0.429 Sum_probs=47.8
Q ss_pred CcccCCCCHHHHHHHHHhccCCC---cchhhhhhhhcHHHHHHHHHHH-------HHhCCCCCCCCchHHHHHHHH
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYP---MGPFELADYVGHDTTKFIIDGW-------HKKFPENPLFKPVDALNKLVD 66 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p---~GPf~~~D~vGld~~~~~~~~l-------~~~~~~~~~~~~~~~l~~~~~ 66 (83)
|+++|++||++||.+++.|+|+| +|||+++|.+| +.+.+.++++ +..++..+.|++ ++++++.+
T Consensus 209 l~~~g~~~~~~id~a~~~g~g~~~a~~GP~~~~dl~g-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 282 (319)
T 2dpo_A 209 LVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLNA-EGMLSYSDRYSEGMKRVLKSFGSIPEFSG-ATVEKVNQ 282 (319)
T ss_dssp HHHTTSSCHHHHHHHHHTTHHHHHTTSCHHHHHHHTT-TSHHHHHHHHHHHHHHHHHTCCCCCCCCH-HHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHhCCCCCccccCHHHHHHhcC-chHHHHHHHHhHHHHHHHHHcCCCCCCCH-HHHHHHHH
Confidence 46899899999999999999988 89999999997 6666666555 345664445543 55555443
No 19
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=94.65 E-value=0.0063 Score=40.19 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=26.3
Q ss_pred cccCCCCHHHHHHHHHhccCCCcchhhhhhhhcH
Q psy3941 2 YERGDASPRDIDTAMKLGAGYPMGPFELADYVGH 35 (83)
Q Consensus 2 l~egv~~~~~ID~a~~~g~G~p~GPf~~~D~vGl 35 (83)
+++|++++++||.++... ++||++++|.+|.
T Consensus 199 ~~~g~~~~~~id~~~~~~---~~~~~ei~~~~g~ 229 (317)
T 2ewd_A 199 IKQGLITQEQIDEIVCHT---RIAWKEVADNLKT 229 (317)
T ss_dssp HHTTSSCHHHHHHHHHHH---HHHHHHHHHHHSS
T ss_pred HhccCCCHHHHHHHHHHH---HhhHHHHHHhhcC
Confidence 467878999999999864 7899999998776
No 20
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Probab=87.68 E-value=0.75 Score=29.40 Aligned_cols=37 Identities=14% Similarity=0.098 Sum_probs=32.1
Q ss_pred HHHHHHHHhc-cCCCcchhhhhhhhcHHHHHHHHHHHH
Q psy3941 10 RDIDTAMKLG-AGYPMGPFELADYVGHDTTKFIIDGWH 46 (83)
Q Consensus 10 ~~ID~a~~~g-~G~p~GPf~~~D~vGld~~~~~~~~l~ 46 (83)
..+|.+++.+ .+.++||+...|..+++...+.++.+.
T Consensus 200 ~~~~~~~~~gp~~~~tgP~~r~D~~t~~~~l~~l~~~~ 237 (276)
T 2i76_A 200 GVADNIKKMRVECSLTGPVKRGDWQVVEEERREYEKIF 237 (276)
T ss_dssp HHHHHHHHSCGGGGCCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHhhCCCCcccCCHHHHHHHHHHHhccC
Confidence 6889988877 667789999999999999999888764
No 21
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=77.43 E-value=0.35 Score=30.56 Aligned_cols=40 Identities=10% Similarity=-0.066 Sum_probs=29.1
Q ss_pred cCCCCHHHH--------HHHHHhcc-CCCcchhhhhhhhcHHHHHHHHHH
Q psy3941 4 RGDASPRDI--------DTAMKLGA-GYPMGPFELADYVGHDTTKFIIDG 44 (83)
Q Consensus 4 egv~~~~~I--------D~a~~~g~-G~p~GPf~~~D~vGld~~~~~~~~ 44 (83)
.| .+++++ +.+++.+. +.+.||+...|..+++.....++.
T Consensus 199 ~G-l~~~~~~~l~~~~~~~~~~~~~~~~~~GP~~r~d~~~l~~~l~~l~~ 247 (266)
T 3d1l_A 199 YN-LPFDVMLPLIDETARKVHELEPKTAQTGPAIRYDENVIGNHLRMLAD 247 (266)
T ss_dssp TT-CCGGGGHHHHHHHHHHHHHSCHHHHCCSTTTTTCHHHHHHHHHHTTT
T ss_pred cC-CCHHHHHHHHHHHHHHHHhcChhhhCCCCCccCCHHHHHHHHHHHhc
Confidence 45 366666 55666554 567899999999999988776653
No 22
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=61.86 E-value=4.5 Score=21.21 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHhccCCCcchhhh
Q psy3941 7 ASPRDIDTAMKLGAGYPMGPFEL 29 (83)
Q Consensus 7 ~~~~~ID~a~~~g~G~p~GPf~~ 29 (83)
.+.++||.|++..-....+|-.+
T Consensus 47 Lt~eEI~~Al~ra~~~~~~p~~~ 69 (70)
T 2w84_A 47 LTDEEIDMAFQQSGTAADEPSSL 69 (70)
T ss_dssp CCHHHHHHHHHHHTCCCCC----
T ss_pred CCHHHHHHHHHHccCCCCCCccc
Confidence 68999999998743345566443
No 23
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=42.38 E-value=5.6 Score=18.91 Aligned_cols=8 Identities=50% Similarity=0.912 Sum_probs=4.5
Q ss_pred cccccccc
Q psy3941 73 KSGEGFYN 80 (83)
Q Consensus 73 k~g~GfY~ 80 (83)
|+|+||++
T Consensus 21 KtGe~FfK 28 (45)
T 3l32_A 21 RSGERFLK 28 (45)
T ss_dssp TTTCCHHH
T ss_pred HccccHHH
Confidence 45566664
No 24
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=39.38 E-value=11 Score=23.86 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=15.0
Q ss_pred CcccCCCCHHHHHHHHHh
Q psy3941 1 MYERGDASPRDIDTAMKL 18 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~ 18 (83)
|++.|++|+++||.+++.
T Consensus 84 LvekGvit~~EL~~~~g~ 101 (212)
T 3a8g_B 84 MVEKGILTQDELESLAGG 101 (212)
T ss_dssp HHHTTSSCHHHHHHHHTS
T ss_pred HHHcCCCCHHHHHhhhcc
Confidence 468899999999997664
No 25
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=33.57 E-value=15 Score=22.12 Aligned_cols=17 Identities=0% Similarity=0.149 Sum_probs=12.6
Q ss_pred CcccCCCCHHHHHHHHH
Q psy3941 1 MYERGDASPRDIDTAMK 17 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~ 17 (83)
|++.|++|+++||..+.
T Consensus 120 LvekGvit~~EL~ar~a 136 (157)
T 2zzd_B 120 LVDKQFVTLTELHNKIV 136 (157)
T ss_dssp HHHTTSSCHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHH
Confidence 46788889999976543
No 26
>1rxq_A YFIT; nickel-binding, hydrolase, helix-bundle, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Bacillus subtilis} SCOP: a.213.1.1
Probab=33.17 E-value=25 Score=20.14 Aligned_cols=22 Identities=14% Similarity=0.451 Sum_probs=15.5
Q ss_pred cCCCcchhhhhhhhcHHHHHHH
Q psy3941 20 AGYPMGPFELADYVGHDTTKFI 41 (83)
Q Consensus 20 ~G~p~GPf~~~D~vGld~~~~~ 41 (83)
.-||.|+|.+..-+..+....+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~l 27 (178)
T 1rxq_A 6 LSYPIGEYKPRESISKEQKDKW 27 (178)
T ss_dssp CSCTTCCCCCCSCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHH
Confidence 5688999988877666655433
No 27
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=30.18 E-value=18 Score=22.93 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=20.2
Q ss_pred CcccCCCCHHHHHHHHHhccCCCcchhh
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYPMGPFE 28 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p~GPf~ 28 (83)
|++.|++++++||..+.. +--.+||.-
T Consensus 36 l~ekg~i~~~~~~~~~~~-~e~~~gP~~ 62 (216)
T 3hht_A 36 LIEKGHLSSDAIERVIKH-YEHELGPMN 62 (216)
T ss_dssp HHHTTSCCHHHHHHHHHH-HHTTCCTHH
T ss_pred HHHcCCCCHHHHHHHHHH-HHhccCCcc
Confidence 457888999999998864 555567764
No 28
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=25.96 E-value=17 Score=20.42 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=14.7
Q ss_pred chHHHHHHHHCCCCCcccccccc
Q psy3941 57 PVDALNKLVDEGKLGVKSGEGFY 79 (83)
Q Consensus 57 ~~~~l~~~~~~g~~G~k~g~GfY 79 (83)
+...+..|.+.|..=.+.|+|+|
T Consensus 54 vr~Al~~L~~~G~i~~~~g~G~~ 76 (125)
T 3neu_A 54 VSRAYQELERAGYIYAKRGMGSF 76 (125)
T ss_dssp HHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHCCeEEEecCCEEE
Confidence 34556666777776666667765
No 29
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=25.95 E-value=18 Score=22.71 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=20.2
Q ss_pred CcccCCCCHHHHHHHHHhccCCCcchhh
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYPMGPFE 28 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p~GPf~ 28 (83)
|++.|++++++||..+.. +--.+||..
T Consensus 27 L~eKGli~~~~id~~~~~-~e~~~gP~n 53 (203)
T 1ugp_A 27 LIEQGILTTSMIDRMAEI-YENEVGPHL 53 (203)
T ss_dssp HHHTTSCCHHHHHHHHHH-HHHTSSHHH
T ss_pred HHHcCCCCHHHHHHHHHH-HhcccCCcc
Confidence 457898999999998874 555567754
No 30
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=25.02 E-value=33 Score=18.82 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHhccCCC
Q psy3941 7 ASPRDIDTAMKLGAGYP 23 (83)
Q Consensus 7 ~~~~~ID~a~~~g~G~p 23 (83)
++++||..|++. .|+|
T Consensus 82 It~~DV~~Alr~-~g~~ 97 (103)
T 1tzy_D 82 VTAMDVVYALKR-QGRT 97 (103)
T ss_dssp ECHHHHHHHHHH-TTCE
T ss_pred CCHHHHHHHHHH-cCCC
Confidence 589999999994 6776
No 31
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=24.98 E-value=20 Score=22.86 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=17.4
Q ss_pred CcccCCCCHHHHHHHHHhccCCC
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYP 23 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p 23 (83)
|++.|++|+++||..+..-++.|
T Consensus 84 LvekGvit~~EL~~r~~~~~~~p 106 (229)
T 3hht_B 84 LVDTGVLDEKELDERTEVFSKKP 106 (229)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHCT
T ss_pred HHHcCCCCHHHHHHHHHhhccCC
Confidence 46889999999999887533444
No 32
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=24.82 E-value=18 Score=19.85 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=11.3
Q ss_pred hHHHHHHHHCCCCCcccccccc
Q psy3941 58 VDALNKLVDEGKLGVKSGEGFY 79 (83)
Q Consensus 58 ~~~l~~~~~~g~~G~k~g~GfY 79 (83)
...+..|.+.|..=...|+|+|
T Consensus 51 r~al~~L~~~Gli~~~~~~G~~ 72 (113)
T 3tqn_A 51 SKAYQSLLDDNVIEKRRGLGML 72 (113)
T ss_dssp HHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHCCCEEEecCCeEE
Confidence 3444555555555555555554
No 33
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=24.12 E-value=43 Score=18.40 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHhccCCCc
Q psy3941 7 ASPRDIDTAMKLGAGYPM 24 (83)
Q Consensus 7 ~~~~~ID~a~~~g~G~p~ 24 (83)
++++||..|++. .|+|.
T Consensus 81 Vt~~DV~~ALkr-~g~~l 97 (102)
T 1id3_B 81 VTSLDVVYALKR-QGRTL 97 (102)
T ss_dssp ECHHHHHHHHHH-TTCCE
T ss_pred CcHHHHHHHHHH-cCCCC
Confidence 589999999985 68774
No 34
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=23.29 E-value=47 Score=16.33 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHh
Q psy3941 7 ASPRDIDTAMKL 18 (83)
Q Consensus 7 ~~~~~ID~a~~~ 18 (83)
.+.++||.|+..
T Consensus 42 Lt~~EI~~Al~r 53 (54)
T 3ff5_A 42 LTDEEIDLAFQQ 53 (54)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc
Confidence 789999999864
No 35
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=23.20 E-value=38 Score=20.82 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=19.6
Q ss_pred CcccCCCCHHHHHHHHHhccCCCcchh
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYPMGPF 27 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p~GPf 27 (83)
++.|||-|.++.+.+...|.-+-.|.+
T Consensus 216 viaeGVEt~~~~~~l~~~G~~~~QG~~ 242 (250)
T 4f3h_A 216 TVAEFVADAQSMSSFFTAGVDYVQGDF 242 (250)
T ss_dssp EEECCCCCHHHHHHHHHHTCSEECSTT
T ss_pred EEEeccCCHHHHHHHHHcCCCEEeecc
Confidence 367998899999998876654444543
No 36
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=22.54 E-value=43 Score=13.88 Aligned_cols=10 Identities=40% Similarity=0.591 Sum_probs=7.5
Q ss_pred CCHHHHHHHH
Q psy3941 7 ASPRDIDTAM 16 (83)
Q Consensus 7 ~~~~~ID~a~ 16 (83)
.+|++||.=+
T Consensus 13 lspddi~qw~ 22 (28)
T 2b3g_B 13 LSPDDIEQWF 22 (28)
T ss_dssp CCHHHHHHHH
T ss_pred cChHHHHHHh
Confidence 5899999633
No 37
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=22.50 E-value=37 Score=18.65 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=11.8
Q ss_pred CCHHHHHHHHHhccCCC
Q psy3941 7 ASPRDIDTAMKLGAGYP 23 (83)
Q Consensus 7 ~~~~~ID~a~~~g~G~p 23 (83)
++++||..|++. .|+|
T Consensus 82 vt~~DV~~Alr~-~g~~ 97 (103)
T 2yfw_B 82 VTSLDVVYALKR-QGRT 97 (103)
T ss_dssp ECHHHHHHHHHH-HC--
T ss_pred CcHHHHHHHHHH-cCCC
Confidence 589999999984 6776
No 38
>3w3e_A Cotyledoneous yieldin-like protein; alpha helical protein, hydrolase, family 19 glycosidase, REG protein of the cell WALL yield threshold; 1.50A {Vigna unguiculata} PDB: 1dxj_A
Probab=22.47 E-value=29 Score=22.32 Aligned_cols=24 Identities=25% Similarity=0.594 Sum_probs=12.5
Q ss_pred HHHHHHHHCCCCCccccccccccC
Q psy3941 59 DALNKLVDEGKLGVKSGEGFYNYK 82 (83)
Q Consensus 59 ~~l~~~~~~g~~G~k~g~GfY~y~ 82 (83)
.+.+.|+..-.-+.-.++|||.|+
T Consensus 10 ~~f~~~~~~rn~~~c~~~~fYty~ 33 (242)
T 3w3e_A 10 SLFDQLLKHRNDQACEGKGFYSYN 33 (242)
T ss_dssp HHHHHHTTTTTSTTSSCTTCSCHH
T ss_pred HHHHHHhhccCCCCCCCCCcccHH
Confidence 344455543333444566777764
No 39
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=21.96 E-value=31 Score=21.47 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=17.8
Q ss_pred CCchHHHHHHHHCCCCCcccccccc
Q psy3941 55 FKPVDALNKLVDEGKLGVKSGEGFY 79 (83)
Q Consensus 55 ~~~~~~l~~~~~~g~~G~k~g~GfY 79 (83)
.++...+..|.++|..=++.|+|.|
T Consensus 48 ~tvr~Al~~L~~~G~i~~~~g~G~~ 72 (236)
T 3edp_A 48 TTIRRAVDLLVEEGLVVRKNGVGLY 72 (236)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCceEE
Confidence 3455667777888887777777766
No 40
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=21.49 E-value=28 Score=19.67 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=13.5
Q ss_pred chHHHHHHHHCCCCCcccccccc
Q psy3941 57 PVDALNKLVDEGKLGVKSGEGFY 79 (83)
Q Consensus 57 ~~~~l~~~~~~g~~G~k~g~GfY 79 (83)
+...+..|...|..=.+.|+|+|
T Consensus 45 Vr~Al~~L~~~Gli~~~~g~G~~ 67 (129)
T 2ek5_A 45 ARNGLTLLVEAGILYKKRGIGMF 67 (129)
T ss_dssp HHHHHHHHHTTTSEEEETTTEEE
T ss_pred HHHHHHHHHHCCcEEEecCCEEE
Confidence 34455556666665555666665
No 41
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=21.45 E-value=23 Score=19.97 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=15.5
Q ss_pred CchHHHHHHHHCCCCCcccccccc
Q psy3941 56 KPVDALNKLVDEGKLGVKSGEGFY 79 (83)
Q Consensus 56 ~~~~~l~~~~~~g~~G~k~g~GfY 79 (83)
++...+..|...|-.=.+.|+|+|
T Consensus 54 tVReAl~~L~~eGlv~~~~g~G~~ 77 (134)
T 4ham_A 54 TVSKAYQELERQEVIITVKGKGTF 77 (134)
T ss_dssp HHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHHCCcEEEEcCcEEE
Confidence 344556666777776666777765
No 42
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=21.14 E-value=27 Score=22.18 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=18.3
Q ss_pred CcccCCCCHHHHHHHHHhccCCCcc
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYPMG 25 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p~G 25 (83)
|++.|++|+++||.....-.+-|..
T Consensus 80 LvekGvit~~EL~ar~~~~~~~p~~ 104 (226)
T 1ugp_B 80 GVRTGKIDLEELERRTQYYRENPDA 104 (226)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHCTTC
T ss_pred HHHcCCCCHHHHHHHHHhhccCCCc
Confidence 4688999999999876654555543
No 43
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=21.04 E-value=23 Score=21.32 Aligned_cols=7 Identities=43% Similarity=1.175 Sum_probs=5.1
Q ss_pred ccccccc
Q psy3941 74 SGEGFYN 80 (83)
Q Consensus 74 ~g~GfY~ 80 (83)
-|+|||+
T Consensus 135 ~GgGyYD 141 (187)
T 1ydm_A 135 FGGGYYD 141 (187)
T ss_dssp CSCCSTT
T ss_pred CCccHHH
Confidence 4678987
No 44
>3ufc_X CAS6, putative uncharacterized protein; ferredoxin-like domain, RNA binding, hydrolase; 2.03A {Pyrococcus furiosus} PDB: 3qjl_A 3qjj_A 3qjp_A
Probab=20.99 E-value=52 Score=20.31 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=14.4
Q ss_pred chHHHHHHHHCCCCCccccccc
Q psy3941 57 PVDALNKLVDEGKLGVKSGEGF 78 (83)
Q Consensus 57 ~~~~l~~~~~~g~~G~k~g~Gf 78 (83)
.+.+++-..+.| +|.|+++||
T Consensus 214 ~~ell~~~y~~G-lG~kns~Gf 234 (243)
T 3ufc_X 214 SKEIAKFGYENG-FGEKTNLGF 234 (243)
T ss_dssp CHHHHHHHHHHC-SBSCGGGTC
T ss_pred CHHHHHHHHHhC-CCCcCCCcc
Confidence 445565555556 699998887
No 45
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=20.76 E-value=46 Score=20.51 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=19.6
Q ss_pred CcccCCCCHHHHHHHHHhccCCCcchh
Q psy3941 1 MYERGDASPRDIDTAMKLGAGYPMGPF 27 (83)
Q Consensus 1 ll~egv~~~~~ID~a~~~g~G~p~GPf 27 (83)
++.|||-|.++.+.+...|.-+-.|.+
T Consensus 212 viaeGVEt~~~~~~l~~lG~~~~QG~~ 238 (259)
T 3s83_A 212 VVAEGVENAEMAHALQSLGCDYGQGFG 238 (259)
T ss_dssp EEECCCCSHHHHHHHHHHTCCEECBTT
T ss_pred EEEEeCCCHHHHHHHHhcCCCEeecCc
Confidence 367898899999988876655445544
No 46
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=20.54 E-value=29 Score=19.46 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=19.2
Q ss_pred CCchHHHHHHHHCCCCCccccccccc
Q psy3941 55 FKPVDALNKLVDEGKLGVKSGEGFYN 80 (83)
Q Consensus 55 ~~~~~~l~~~~~~g~~G~k~g~GfY~ 80 (83)
.++...+..|.+.|..=.+.|+|+|-
T Consensus 50 ~tvr~Al~~L~~~G~i~~~~~~G~~V 75 (126)
T 3ic7_A 50 NTVMRSYEYLQSQEVIYNKRGIGFFV 75 (126)
T ss_dssp GGGHHHHHHHHTTTSEEEETTTEEEE
T ss_pred HHHHHHHHHHHHCCcEEEEcCCccEE
Confidence 34567788888888877778888763
No 47
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=20.46 E-value=25 Score=19.76 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=14.3
Q ss_pred chHHHHHHHHCCCCCcccccccc
Q psy3941 57 PVDALNKLVDEGKLGVKSGEGFY 79 (83)
Q Consensus 57 ~~~~l~~~~~~g~~G~k~g~GfY 79 (83)
+...+..|...|..=.+.|+|+|
T Consensus 52 vr~Al~~L~~~Gli~~~~g~G~~ 74 (126)
T 3by6_A 52 VAKAYKELEAQKVIRTIPGKGTF 74 (126)
T ss_dssp HHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHCCCEEEecCCeEE
Confidence 34556666666766666666665
No 48
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=20.30 E-value=60 Score=16.91 Aligned_cols=48 Identities=19% Similarity=0.012 Sum_probs=33.0
Q ss_pred cchhhhhhhhcHHHHHHHHHHHHHhCCCCCC---CCchHHHHHHHHCCCCC
Q psy3941 24 MGPFELADYVGHDTTKFIIDGWHKKFPENPL---FKPVDALNKLVDEGKLG 71 (83)
Q Consensus 24 ~GPf~~~D~vGld~~~~~~~~l~~~~~~~~~---~~~~~~l~~~~~~g~~G 71 (83)
.|.+.-.+..-++.++..++-+.+.-..-.. -....+|.++++++++=
T Consensus 14 ~GMLtN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~ 64 (74)
T 1ldd_A 14 EGMLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLK 64 (74)
T ss_dssp HHHHHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEE
Confidence 4888888899999999999987543110001 12346788899888764
No 49
>1g2r_A Hypothetical cytosolic protein; NUSA-INFB operon, structural genomics, PSI, protein structure initiative; 1.35A {Streptococcus pneumoniae} SCOP: d.192.1.1
Probab=20.29 E-value=30 Score=19.09 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=9.4
Q ss_pred CCCccccccccc
Q psy3941 69 KLGVKSGEGFYN 80 (83)
Q Consensus 69 ~~G~k~g~GfY~ 80 (83)
-.|++.|+|+|-
T Consensus 41 ~~~k~~GRGaYv 52 (100)
T 1g2r_A 41 PTGKANGRGAYI 52 (100)
T ss_dssp TTSCCCSEEEEE
T ss_pred CCCCCCCCEEEe
Confidence 357889999995
No 50
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A
Probab=20.25 E-value=21 Score=21.79 Aligned_cols=7 Identities=43% Similarity=1.393 Sum_probs=5.0
Q ss_pred ccccccc
Q psy3941 74 SGEGFYN 80 (83)
Q Consensus 74 ~g~GfY~ 80 (83)
-|+|||+
T Consensus 148 ~GgGyYD 154 (203)
T 3hy3_A 148 RGKGYYD 154 (203)
T ss_dssp SSSCHHH
T ss_pred CCCchHH
Confidence 4678886
No 51
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=20.22 E-value=59 Score=15.45 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=13.9
Q ss_pred cccCCCCHHHHHHHHHhccC
Q psy3941 2 YERGDASPRDIDTAMKLGAG 21 (83)
Q Consensus 2 l~egv~~~~~ID~a~~~g~G 21 (83)
|+.|-.+-++.|.++.+.+|
T Consensus 28 V~~G~iTQ~E~D~I~~ypwg 47 (51)
T 2xf7_A 28 VNAGDLTQEEADKIMSYPWG 47 (51)
T ss_dssp HHHTSSCHHHHHHHHTSCTT
T ss_pred HhcCcccHHHHHHHHhCccc
Confidence 34566778888888876554
Done!