BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3942
(160 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M75|B Chain B, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 143 bits (360), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 93/129 (72%)
Query: 30 GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
G++ ++ TLS I S+ V +DLV+EAIVEN+ +K++LF +DK A I ASNT
Sbjct: 77 GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 136
Query: 90 SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
SSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T TS T+ ++ ++ K++GK
Sbjct: 137 SSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 196
Query: 150 IVCKDTPGF 158
+ CKDTPGF
Sbjct: 197 VSCKDTPGF 205
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 143 bits (360), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 93/129 (72%)
Query: 30 GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
G++ ++ TLS I S+ V +DLV+EAIVEN+ +K++LF +DK A I ASNT
Sbjct: 77 GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 136
Query: 90 SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
SSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T TS T+ ++ ++ K++GK
Sbjct: 137 SSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 196
Query: 150 IVCKDTPGF 158
+ CKDTPGF
Sbjct: 197 VSCKDTPGF 205
>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
Length = 310
Score = 142 bits (358), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 93/129 (72%)
Query: 30 GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
G++ ++ TLS I S+ V +DLV+EAIVEN+ +K++LF +DK A I ASNT
Sbjct: 77 GDECVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 136
Query: 90 SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
SSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T TS T+ ++ ++ K++GK
Sbjct: 137 SSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 196
Query: 150 IVCKDTPGF 158
+ CKDTPGF
Sbjct: 197 VSCKDTPGF 205
>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSO|B Chain B, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 93/129 (72%)
Query: 30 GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
G++ ++ TLS I S+ V +DLV+EAIVEN+ +K++LF +DK A I ASNT
Sbjct: 77 GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 136
Query: 90 SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
+SL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T TS T+ ++ ++ K++GK
Sbjct: 137 ASLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 196
Query: 150 IVCKDTPGF 158
+ CKDTPGF
Sbjct: 197 VSCKDTPGF 205
>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSJ|B Chain B, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 93/129 (72%)
Query: 30 GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
G++ ++ TLS I S+ V +DLV+EAIV+N+ +K++LF +DK A I ASNT
Sbjct: 77 GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFASNT 136
Query: 90 SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
SSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T TS T+ ++ ++ K++GK
Sbjct: 137 SSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 196
Query: 150 IVCKDTPGF 158
+ CKDTPGF
Sbjct: 197 VSCKDTPGF 205
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 142 bits (357), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 93/129 (72%)
Query: 30 GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
G++ ++ TLS I S+ V +DLV+EAIVEN+ +K++LF +DK A I ASNT
Sbjct: 77 GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 136
Query: 90 SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
SSL IT IA+ T R+D+F GLHFFNPVP+MKL++VI+T TS T+ ++ ++ K++GK
Sbjct: 137 SSLQITSIANATTRQDRFAGLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGKHP 196
Query: 150 IVCKDTPGF 158
+ CKDTPGF
Sbjct: 197 VSCKDTPGF 205
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 93/129 (72%)
Query: 30 GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
G++ ++ TLS I S+ V +DLV+EAIVEN+ +K++LF +DK A I ASNT
Sbjct: 77 GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNT 136
Query: 90 SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
SSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T TS T+ ++ ++ K++GK
Sbjct: 137 SSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 196
Query: 150 IVCKDTPGF 158
+ CKDTPGF
Sbjct: 197 VSCKDTPGF 205
>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
pdb|3RQS|B Chain B, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
Length = 324
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 92/129 (71%)
Query: 30 GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
G++ ++ TLS I S+ V +DLV+EAIVEN+ +K++LF +DK A I ASNT
Sbjct: 99 GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 158
Query: 90 SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
SSL IT IA+ T R+D+F GLHFFNPVP+ KL+EVI+T TS T+ ++ ++ K++GK
Sbjct: 159 SSLQITSIANATTRQDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHP 218
Query: 150 IVCKDTPGF 158
+ CKDTPGF
Sbjct: 219 VSCKDTPGF 227
>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M76|B Chain B, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 141 bits (355), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 92/129 (71%)
Query: 30 GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
G++ ++ TLS I S+ V +DLV+EAIVEN+ +K++LF +DK A I ASNT
Sbjct: 77 GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 136
Query: 90 SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
SL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T TS T+ ++ ++ K++GK
Sbjct: 137 CSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 196
Query: 150 IVCKDTPGF 158
+ CKDTPGF
Sbjct: 197 VSCKDTPGF 205
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 139 bits (351), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 91/129 (70%)
Query: 30 GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
G++ ++ TLS I S+ V +DLV+EAIVEN+ +K +LF +DK A I ASNT
Sbjct: 77 GDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNT 136
Query: 90 SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
SSL IT +A+ T R+D+F GLHFFNPVP+MKL+EV++T TS T ++ ++ K++GK
Sbjct: 137 SSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHP 196
Query: 150 IVCKDTPGF 158
+ CKDTPGF
Sbjct: 197 VSCKDTPGF 205
>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 293
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 91/129 (70%)
Query: 30 GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
G++ + TLS I S+ V +DLV+EAIVEN+ +K++LF +DK A I ASNT
Sbjct: 66 GDEFVAKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNT 125
Query: 90 SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
SSL IT IA+ T R+D+F GLHFFNPVP+ KL+EVI+T TS T+ ++ ++ K++GK
Sbjct: 126 SSLQITSIANATTRQDRFAGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHP 185
Query: 150 IVCKDTPGF 158
+ CKDTPGF
Sbjct: 186 VSCKDTPGF 194
>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2
Length = 725
Score = 105 bits (263), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 94/162 (58%), Gaps = 15/162 (9%)
Query: 8 QEEGEKLIDSTLSRIKGS----------SKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLV 57
+E EK +++ + R+K + S+E+ EK T+S +KGS E S D+V
Sbjct: 341 KEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEK----TMSLLKGSLDYE-SFRDVDMV 395
Query: 58 IEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVP 117
IEA++EN+ +K ++F ++K P ILASNTS++ + +I T +D+ VG HFF+P
Sbjct: 396 IEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAH 455
Query: 118 MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFT 159
+M LLE++RTN TS + + GK I KT +V + GF
Sbjct: 456 IMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFA 497
>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 715
Score = 98.2 bits (243), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%)
Query: 55 DLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFN 114
DLV+EA+VEN +K + V+ AILASNTS++SI+ +A R + FVG+HFFN
Sbjct: 395 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFN 454
Query: 115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
PV MM L+EVIR +SD + K +GK IV D PGF
Sbjct: 455 PVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGF 498
>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|B Chain B, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|C Chain C, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
Length = 483
Score = 91.7 bits (226), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 37 TLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITE 96
TL R+ + + +++ +DLVIEA E +++K LF + ++ P +L +NTSS+SIT
Sbjct: 69 TLKRLIPVTDIH-ALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITA 127
Query: 97 IASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTP 156
IA+ ++ GLHFFNP P+MKL+EV+ T+ + E S GK + C TP
Sbjct: 128 IAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHSTP 187
Query: 157 GF 158
GF
Sbjct: 188 GF 189
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 90.1 bits (222), Expect = 5e-19, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
Query: 9 EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
+ +K+I TL + + + G+ L R S+K +S DLV+EA+ E+M++K
Sbjct: 353 DAAKKIITFTLEKEASRAHQNGQASAKPKL-RFSSSTK---ELSTVDLVVEAVFEDMNLK 408
Query: 69 HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
K+F + + A L +NTS+L++ +IAS T+R +G HFF+P +M+LLEVI +
Sbjct: 409 KKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSR 468
Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
+S T V K IGK +V + GF
Sbjct: 469 YSSPTTIATVMSLSKKIGKIGVVVGNCYGF 498
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 90.1 bits (222), Expect = 5e-19, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
Query: 9 EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
+ +K+I TL + + + G+ L R S+K +S DLV+EA+ E+M++K
Sbjct: 353 DAAKKIITFTLEKEASRAHQNGQASAKPKL-RFSSSTK---ELSTVDLVVEAVFEDMNLK 408
Query: 69 HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
K+F + + A L +NTS+L++ +IAS T+R +G HFF+P +M+LLEVI +
Sbjct: 409 KKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSR 468
Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
+S T V K IGK +V + GF
Sbjct: 469 YSSPTTIATVMSLSKKIGKIGVVVGNCYGF 498
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 89.7 bits (221), Expect = 6e-19, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
Query: 9 EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
+ +K+I TL + + + G+ L R S+K +S DLV+EA+ E+M++K
Sbjct: 338 DAAKKIITFTLEKEASRAHQNGQASAKPKL-RFSSSTK---ELSTVDLVVEAVFEDMNLK 393
Query: 69 HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
K+F + + A L +NTS+L++ +IAS T+R +G HFF+P +M+LLEVI +
Sbjct: 394 KKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSR 453
Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
+S T V K IGK +V + GF
Sbjct: 454 YSSPTTIATVMSLSKKIGKIGVVVGNCYGF 483
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 82/147 (55%), Gaps = 4/147 (2%)
Query: 12 EKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKL 71
+K+I TL + + + G+ L R S+K +S DLV+EA+ E+M++K K+
Sbjct: 77 KKIITFTLEKEASRAHQNGQASAKPKL-RFSSSTK---ELSTVDLVVEAVFEDMNLKKKV 132
Query: 72 FTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTS 131
F + + A L +NTS+L++ +IAS T+R +G HFF+P +M+LLEVI + +S
Sbjct: 133 FAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSS 192
Query: 132 DATYNAVTEWGKSIGKTTIVCKDTPGF 158
T V K IGK +V + GF
Sbjct: 193 PTTIATVMSLSKKIGKIGVVVGNCYGF 219
>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E12|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E13|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
Length = 283
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 67/116 (57%)
Query: 38 LSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEI 97
L I+ S + +V +DLVIEA+ E++D+K ++T + ++APA I A+N+S+L +++
Sbjct: 70 LGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDL 129
Query: 98 ASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK 153
T R DKF+ LHF N V + EV+ T T Y V E+ +IG I K
Sbjct: 130 VGYTGRGDKFLALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELK 185
>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of
Multifuctional Enzyme 1 From C.Elegans
Length = 460
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 75/131 (57%), Gaps = 3/131 (2%)
Query: 31 EKLIDLTLSRIKGSSKVE---DSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILAS 87
++L D + +I + K+ +S DL++E+++E+M +K +LF +++ I ++ I +
Sbjct: 105 KRLNDKRIEKINANLKITSDFHKLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGT 164
Query: 88 NTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGK 147
NTSSL + EI+SV VG+HFFNP +++L+E+I + TS + +SI K
Sbjct: 165 NTSSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKK 224
Query: 148 TTIVCKDTPGF 158
++ + F
Sbjct: 225 LPVLVGNCKSF 235
>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase
(Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At
2.00 A Resolution
Length = 293
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 73/123 (59%), Gaps = 3/123 (2%)
Query: 31 EKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTS 90
E++ + LS+I+ ++ +E V D+V EA+ E+++ K ++ V+++ +A L SNTS
Sbjct: 52 EQIPEELLSKIEFTTTLE-KVKDCDIVXEAVFEDLNTKVEVLREVERLT--NAPLCSNTS 108
Query: 91 SLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150
+S+ +IA + +F+G+H+ NP + L+E++ + T T V + + +GK +
Sbjct: 109 VISVDDIAERLDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVAFVEGFLRELGKEVV 168
Query: 151 VCK 153
VCK
Sbjct: 169 VCK 171
>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1
pdb|3F3S|B Chain B, The Crystal Structure Of Human Lambda-Crystallin, Cryl1
Length = 313
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 67/128 (52%), Gaps = 3/128 (2%)
Query: 34 IDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS 93
++ LS I G ++++V + + E + E++++K K+F +D I IL+S+TS L
Sbjct: 65 VEEQLSLISGCPNIQEAVEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLM 124
Query: 94 ITEI-ASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI-V 151
+++ A + + K V H NP + L+E++ +T+ T + K IG+ + V
Sbjct: 125 PSKLFAGLVHVKQCIVA-HPVNPPYYIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRV 183
Query: 152 CKDTPGFT 159
K+ GF
Sbjct: 184 QKEVAGFV 191
>pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
pdb|3ADP|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
(
Length = 319
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Query: 38 LSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEI 97
LS I + + ++V + E + EN+D+K K+F +D I +L+S++S L +++
Sbjct: 72 LSLISSCTNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKL 131
Query: 98 ASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI-VCKDTP 156
+ + + H NP + L+E++ +TS AT + + IG++ + V K+
Sbjct: 132 FTGLAHVKQCIVAHPVNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEID 191
Query: 157 GFT 159
GF
Sbjct: 192 GFV 194
>pdb|2EEX|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
pdb|2EJ1|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
pdb|2EQD|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
Length = 519
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 2 AAQAGNQEEGEK-LIDSTLSRIKGSSKEEGEKLIDL 36
A G + EG + ID L ++K +S EEG++L+D+
Sbjct: 244 APDWGTEGEGYRWFIDYYLDKMKKASDEEGKRLLDV 279
>pdb|2E0P|A Chain A, The Crystal Structure Of Cel44a
pdb|2E4T|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
pdb|2EO7|A Chain A, Crystal Structure Of Cel44a, Gh Family 44 Endoglucanase
From Clostridium Thermocellum
Length = 519
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 2 AAQAGNQEEGEK-LIDSTLSRIKGSSKEEGEKLIDL 36
A G + EG + ID L ++K +S EEG++L+D+
Sbjct: 244 APDWGTEGEGYRWFIDYYLDKMKKASDEEGKRLLDV 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,222,482
Number of Sequences: 62578
Number of extensions: 146424
Number of successful extensions: 400
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 42
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)