BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3942
(160 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P41938|HCDH2_CAEEL Probable 3-hydroxyacyl-CoA dehydrogenase B0272.3 OS=Caenorhabditis
elegans GN=B0272.3 PE=1 SV=1
Length = 309
Score = 153 bits (386), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 93/126 (73%)
Query: 33 LIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSL 92
L+ L RIK S+ V DSV +DLVIEAIVEN+DIK KLF V+ A + ++ +NTSSL
Sbjct: 87 LVSSVLDRIKMSTNVSDSVKDADLVIEAIVENIDIKRKLFAEVEVAAKPTTLITTNTSSL 146
Query: 93 SITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152
+ +I K +F GLHFFNPVPMMKLLEV+R +TSDAT+N + ++GK++GKTT+ C
Sbjct: 147 RLADIGLNLKDKSRFGGLHFFNPVPMMKLLEVVRHTETSDATFNQLVDYGKTVGKTTVAC 206
Query: 153 KDTPGF 158
KDTPGF
Sbjct: 207 KDTPGF 212
>sp|Q61425|HCDH_MOUSE Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Mus musculus
GN=Hadh PE=1 SV=2
Length = 314
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 102/151 (67%), Gaps = 4/151 (2%)
Query: 12 EKLIDSTLSRIKGSSKEE----GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDI 67
+K I+ +L R+ E G++ ++ TLS + S+ V +DLV+EAIVEN+ +
Sbjct: 67 KKGIEESLKRMAKKKFTENPKAGDEFVEKTLSCLSTSTDAASVVHSTDLVVEAIVENLKL 126
Query: 68 KHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRT 127
K++LF +DK A I ASNTSSL IT IA+ T R+D+F GLHFFNPVPMMKL+EVI+T
Sbjct: 127 KNELFQRLDKFAAEHTIFASNTSSLQITNIANATTRQDRFAGLHFFNPVPMMKLVEVIKT 186
Query: 128 NDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
TS T+ ++ ++ K++GK + CKDTPGF
Sbjct: 187 PMTSQKTFESLVDFCKTLGKHPVSCKDTPGF 217
>sp|Q16836|HCDH_HUMAN Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Homo sapiens
GN=HADH PE=1 SV=3
Length = 314
Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 93/129 (72%)
Query: 30 GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
G++ ++ TLS I S+ V +DLV+EAIVEN+ +K++LF +DK A I ASNT
Sbjct: 89 GDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNT 148
Query: 90 SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
SSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T TS T+ ++ ++ K++GK
Sbjct: 149 SSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHP 208
Query: 150 IVCKDTPGF 158
+ CKDTPGF
Sbjct: 209 VSCKDTPGF 217
>sp|Q9WVK7|HCDH_RAT Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Rattus
norvegicus GN=Hadh PE=2 SV=1
Length = 314
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 100/151 (66%), Gaps = 4/151 (2%)
Query: 12 EKLIDSTLSRIKGSSKEEGEK----LIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDI 67
+K I+ +L R+ E K ++ TLS + S+ V +DLV+EAIVEN+ +
Sbjct: 67 KKGIEESLKRMAKKKFTENPKAADEFVEKTLSSLSTSTDAASVVHSTDLVVEAIVENLKL 126
Query: 68 KHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRT 127
K++LF +DK A I ASNTSSL IT IA+ T R+D+F GLHFFNPVPMMKL+EVI+T
Sbjct: 127 KNELFQRLDKFAAEHTIFASNTSSLQITNIANATTRQDRFAGLHFFNPVPMMKLVEVIKT 186
Query: 128 NDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
TS T+ ++ ++ K++GK + CKDTPGF
Sbjct: 187 PMTSQKTFESLVDFCKTLGKHPVSCKDTPGF 217
>sp|P34439|HCDH1_CAEEL Probable 3-hydroxyacyl-CoA dehydrogenase F54C8.1 OS=Caenorhabditis
elegans GN=F54C8.1 PE=3 SV=1
Length = 298
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 98/136 (72%), Gaps = 1/136 (0%)
Query: 23 KGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPAS 82
KG+ KE+ + + LT+SRIK + V +V+ +DL+IEA +EN+D+K +F +++
Sbjct: 66 KGTDKEKSD-FVTLTMSRIKTCNNVSTAVADADLIIEAAIENIDLKRGIFAQIEQSCKKD 124
Query: 83 AILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWG 142
+IL +NTSS + ++A K +F GLHFFNPVP+MKLLEVIR++DTSD TY + ++G
Sbjct: 125 SILTTNTSSFLLEDVAKGLQDKTRFGGLHFFNPVPVMKLLEVIRSDDTSDETYATLIKFG 184
Query: 143 KSIGKTTIVCKDTPGF 158
++GKTT+ CKD+PGF
Sbjct: 185 TAVGKTTVACKDSPGF 200
>sp|P00348|HCDH_PIG Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Sus scrofa
GN=HADH PE=1 SV=2
Length = 314
Score = 140 bits (352), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 91/129 (70%)
Query: 30 GEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89
G++ ++ TLS I S+ V +DLV+EAIVEN+ +K +LF +DK A I ASNT
Sbjct: 89 GDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNT 148
Query: 90 SSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149
SSL IT +A+ T R+D+F GLHFFNPVP+MKL+EV++T TS T ++ ++ K++GK
Sbjct: 149 SSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHP 208
Query: 150 IVCKDTPGF 158
+ CKDTPGF
Sbjct: 209 VSCKDTPGF 217
>sp|P77851|HBD_THETC 3-hydroxybutyryl-CoA dehydrogenase OS=Thermoanaerobacterium
thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB
9385 / NCA 3814) GN=hbd PE=3 SV=2
Length = 281
Score = 135 bits (341), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 89/122 (72%), Gaps = 1/122 (0%)
Query: 38 LSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEI 97
LSRI+G++ +ED+ ++D V+EA +ENMD+K ++F +D+I ILASNTSSLSITEI
Sbjct: 66 LSRIRGTTNLEDA-KEADFVVEAAIENMDLKKQIFKELDEICKMETILASNTSSLSITEI 124
Query: 98 ASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG 157
AS T R +K +G+HFFNPVP+MKL+EVI+ TS+ T+N V E + KT I K+ PG
Sbjct: 125 ASATKRPEKVIGMHFFNPVPVMKLVEVIKGLKTSEQTFNVVRELALKVDKTPIEVKEAPG 184
Query: 158 FT 159
F
Sbjct: 185 FV 186
>sp|P52041|HBD_CLOAB 3-hydroxybutyryl-CoA dehydrogenase OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=hbd PE=3 SV=2
Length = 282
Score = 126 bits (316), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 70/151 (46%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 9 EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
+ G I+ LS++ K E +++ L+RI G+ + + + DLVIEA VE MDIK
Sbjct: 38 DRGLDFINKNLSKLVKKGKIEEATKVEI-LTRISGTVDL-NMAADCDLVIEAAVERMDIK 95
Query: 69 HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
++F +D I ILASNTSSLSITE+AS T R DK +G+HFFNP P+MKL+EVIR
Sbjct: 96 KQIFADLDNICKPETILASNTSSLSITEVASATKRPDKVIGMHFFNPAPVMKLVEVIRGI 155
Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGFT 159
TS T++AV E +IGK + + PGF
Sbjct: 156 ATSQETFDAVKETSIAIGKDPVEVAEAPGFV 186
>sp|Q9RVG1|HBD_DEIRA Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
GN=hbd PE=3 SV=1
Length = 278
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 102/173 (58%), Gaps = 20/173 (11%)
Query: 1 VAAQAG--------NQE---EGEKLIDSTLSRIKGSSKEEGEKLIDL---TLSRIKGSSK 46
VAAQ+G QE G+ +I+ +L ++ E KL D L RI ++
Sbjct: 18 VAAQSGFDVVVHDQKQEFLDRGKGVIEKSLGKL-----HEKGKLTDAPETVLGRIHFTTD 72
Query: 47 VEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDK 106
++D + DLV+EAIVEN IK+ LF + +I ILASNTSS+ IT +A+ + R +
Sbjct: 73 LQD-FADCDLVVEAIVENQQIKNDLFKQLGQIVKPEGILASNTSSIPITALATASGRPAQ 131
Query: 107 FVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFT 159
F+G+HF NPVP+M+L+EVIR TSD T VTE + +GKT + C D PGF
Sbjct: 132 FIGMHFMNPVPLMQLVEVIRGYQTSDETARIVTETAEKLGKTPLSCNDFPGFV 184
>sp|P45856|HBD_BACSU Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Bacillus subtilis
(strain 168) GN=mmgB PE=2 SV=1
Length = 287
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 93/150 (62%), Gaps = 2/150 (1%)
Query: 9 EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
E G K + L+R K E + ++RI S +E++ +D+VIEAI ENM K
Sbjct: 40 EAGLKRLKKQLARDAEKGKRT-ETEVKSVINRISISQTLEEA-EHADIVIEAIAENMAAK 97
Query: 69 HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
++F ++D+I P ILASNTSSL ITEIA+VTNR + +G+HF NPVP+MKL+EVIR
Sbjct: 98 TEMFKTLDRICPPHTILASNTSSLPITEIAAVTNRPQRVIGMHFMNPVPVMKLVEVIRGL 157
Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
TS+ T V + +GKT + D PGF
Sbjct: 158 ATSEETALDVMALAEKMGKTAVEVNDFPGF 187
>sp|P45364|HBD_CLODI 3-hydroxybutyryl-CoA dehydrogenase OS=Clostridium difficile GN=hbd
PE=3 SV=1
Length = 281
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Query: 38 LSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEI 97
LS + ++ ED + DL+IEA VE+M+IK +F +D++ ILA+NTSSLSITEI
Sbjct: 65 LSHVSSTTNYED-LKDMDLIIEASVEDMNIKKDVFKLLDELCKEDTILATNTSSLSITEI 123
Query: 98 ASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG 157
AS T R DK +G+HFFNPVPMMKL+EVI TS T++ V E KSI K + ++PG
Sbjct: 124 ASSTKRPDKVIGMHFFNPVPMMKLVEVISGQLTSKVTFDTVFELSKSINKVPVDVSESPG 183
Query: 158 F 158
F
Sbjct: 184 F 184
>sp|Q45223|HBD_BRAJA 3-hydroxybutyryl-CoA dehydrogenase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=hbdA PE=3 SV=1
Length = 293
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 82/122 (67%), Gaps = 1/122 (0%)
Query: 37 TLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITE 96
LSRI + K++D ++ DLVIE VE ++K K+F + + AI+AS+TSS+SIT
Sbjct: 69 ALSRIVAAEKLDD-LADCDLVIETAVEKEEVKRKIFHELCAVLKPEAIVASDTSSISITR 127
Query: 97 IASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTP 156
+A+ T+R ++F+G+HF NPVP+M+L+E+IR T DAT+ A E+ +GK V +D P
Sbjct: 128 LAAATDRPERFIGIHFMNPVPLMELVELIRGIATDDATFEASKEFVAKLGKQVAVSEDFP 187
Query: 157 GF 158
F
Sbjct: 188 AF 189
>sp|Q5QXH7|FADB_IDILO Fatty acid oxidation complex subunit alpha OS=Idiomarina loihiensis
(strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=fadB PE=3
SV=1
Length = 718
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 81/128 (63%), Gaps = 2/128 (1%)
Query: 31 EKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTS 90
EK+I + LS I + + D+V D+V+EA+VEN +K + ++ + AIL SNTS
Sbjct: 372 EKMIKI-LSSIT-PTLLNDAVKDVDIVVEAVVENPKVKGSVLAEIEGVIGDDAILTSNTS 429
Query: 91 SLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150
++SITE+A R +KF G+HFFNPV M L+E+IR TSD T NAV + +GKT I
Sbjct: 430 TISITELAKNLKRPEKFCGMHFFNPVHKMPLVEIIRGEKTSDDTVNAVVAYALKLGKTPI 489
Query: 151 VCKDTPGF 158
V D PGF
Sbjct: 490 VVNDCPGF 497
>sp|A5WH99|FADB_PSYWF Fatty acid oxidation complex subunit alpha OS=Psychrobacter sp.
(strain PRwf-1) GN=fadB PE=3 SV=1
Length = 719
Score = 108 bits (271), Expect = 1e-23, Method: Composition-based stats.
Identities = 61/149 (40%), Positives = 88/149 (59%), Gaps = 6/149 (4%)
Query: 10 EGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69
E KL+ + R K + + GE TLSRI+ + D ++D+VIEA+VEN +KH
Sbjct: 357 EASKLLGKMVERKKMTPAQMGE-----TLSRIRPTLNYGD-FGETDIVIEAVVENPKVKH 410
Query: 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTND 129
+ V+ + +AILASNTS++SIT +A+V R + FVG+HFFNPV M L+EVIR
Sbjct: 411 AVLKEVEGLVKDNAILASNTSTISITYLATVLERPENFVGMHFFNPVHRMPLVEVIRGEK 470
Query: 130 TSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
+S+ + +GK +V D PGF
Sbjct: 471 SSEEAIATTVALAQRMGKVPVVVNDCPGF 499
>sp|O49809|MFPA_BRANA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a
OS=Brassica napus PE=2 SV=2
Length = 725
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 94/162 (58%), Gaps = 15/162 (9%)
Query: 8 QEEGEKLIDSTLSRIKGS----------SKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLV 57
+E EK +++ + R+K + SKE+ EK T+S +KGS E S D+V
Sbjct: 341 KEVNEKFLEAGIGRVKANLQSRVKKGKMSKEKFEK----TMSLLKGSLDYE-SFRDVDMV 395
Query: 58 IEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVP 117
IEA++EN+ +K ++F ++K P ILASNTS++ + +I T +D+ +G HFF+P
Sbjct: 396 IEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIIGAHFFSPAH 455
Query: 118 MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFT 159
+M LLE++RTN TS + + GK I KT +V + GF
Sbjct: 456 VMPLLEIVRTNHTSAQVIVDLLDVGKKIRKTPVVVGNCTGFA 497
>sp|Q9ZPI5|MFP2_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2
OS=Arabidopsis thaliana GN=MFP2 PE=1 SV=1
Length = 725
Score = 105 bits (263), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 94/162 (58%), Gaps = 15/162 (9%)
Query: 8 QEEGEKLIDSTLSRIKGS----------SKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLV 57
+E EK +++ + R+K + S+E+ EK T+S +KGS E S D+V
Sbjct: 341 KEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEK----TMSLLKGSLDYE-SFRDVDMV 395
Query: 58 IEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVP 117
IEA++EN+ +K ++F ++K P ILASNTS++ + +I T +D+ VG HFF+P
Sbjct: 396 IEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAH 455
Query: 118 MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFT 159
+M LLE++RTN TS + + GK I KT +V + GF
Sbjct: 456 IMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGNCTGFA 497
>sp|Q29554|ECHA_PIG Trifunctional enzyme subunit alpha, mitochondrial OS=Sus scrofa
GN=HADHA PE=1 SV=1
Length = 763
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Query: 53 QSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHF 112
++D+VIEA+ E + +KHK+ V+ + P + ASNTS+L I+EIA+V+ R +K +G+H+
Sbjct: 440 KADMVIEAVFEELSLKHKVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHY 499
Query: 113 FNPVPMMKLLEVIRTNDTS-DATYNAVTEWGKSIGKTTIVCKDTPGF 158
F+PV M+LLE+I T TS D+T +AV E G GK IV KD PGF
Sbjct: 500 FSPVDKMQLLEIITTEKTSKDSTASAV-EVGLKQGKVIIVVKDGPGF 545
>sp|P40939|ECHA_HUMAN Trifunctional enzyme subunit alpha, mitochondrial OS=Homo sapiens
GN=HADHA PE=1 SV=2
Length = 763
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 71/106 (66%)
Query: 53 QSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHF 112
++D+VIEA+ E++ +KH++ V+ + P I ASNTS+L I+EIA+V+ R +K +G+H+
Sbjct: 440 KADMVIEAVFEDLSLKHRVLKEVEAVIPDHCIFASNTSALPISEIAAVSKRPEKVIGMHY 499
Query: 113 FNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
F+PV M+LLE+I T TS T + G GK IV KD PGF
Sbjct: 500 FSPVDKMQLLEIITTEKTSKDTSASAVAVGLKQGKVIIVVKDGPGF 545
>sp|Q1Q8J9|FADB_PSYCK Fatty acid oxidation complex subunit alpha OS=Psychrobacter
cryohalolentis (strain K5) GN=fadB PE=3 SV=1
Length = 719
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 85/149 (57%), Gaps = 6/149 (4%)
Query: 10 EGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69
E KL+ + R K + + GE TLSRI+ + D +++D+VIEA+VEN ++K
Sbjct: 357 EASKLLGKMVDRGKITPAKMGE-----TLSRIRPTLNYGD-FAETDIVIEAVVENPNVKR 410
Query: 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTND 129
+ V+ + ILASNTS++SIT +A R + FVG+HFFNPV M L+EVIR
Sbjct: 411 AVLKEVEGLVKDDCILASNTSTISITFLAEALERPENFVGMHFFNPVNRMPLVEVIRGEK 470
Query: 130 TSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
+S+ + +GK +V D PGF
Sbjct: 471 SSEEAISTTVALATKMGKVPVVVNDCPGF 499
>sp|B2I2J9|FADB_ACIBC Fatty acid oxidation complex subunit alpha OS=Acinetobacter
baumannii (strain ACICU) GN=fadB PE=3 SV=1
Length = 717
Score = 101 bits (252), Expect = 2e-21, Method: Composition-based stats.
Identities = 58/150 (38%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Query: 9 EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
+E L+ + R K + GE TL+RI+ + E+ + D+VIEA+ EN +K
Sbjct: 356 KEANNLLTKQVERKKMKPAQMGE-----TLARIRPTLSYEE-FKEVDIVIEAVTENPKVK 409
Query: 69 HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
+ +K + I+ASNTS++SIT +A R + FVG+HFFNPV MM L+EVIR
Sbjct: 410 EIVLAETEKNVRENTIIASNTSTISITRLAKALQRPENFVGMHFFNPVHMMPLVEVIRGE 469
Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
TS+ + +GKT IV D PGF
Sbjct: 470 KTSEEAIATTVVLAQKMGKTPIVVNDCPGF 499
>sp|B0VLX4|FADB_ACIBS Fatty acid oxidation complex subunit alpha OS=Acinetobacter
baumannii (strain SDF) GN=fadB PE=3 SV=1
Length = 717
Score = 101 bits (252), Expect = 2e-21, Method: Composition-based stats.
Identities = 58/150 (38%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Query: 9 EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
+E L+ + R K + GE TL+RI+ + E+ + D+VIEA+ EN +K
Sbjct: 356 KEANNLLTKQVERKKMKPAQMGE-----TLARIRPTLSYEE-FKEVDIVIEAVTENPKVK 409
Query: 69 HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
+ +K + I+ASNTS++SIT +A R + FVG+HFFNPV MM L+EVIR
Sbjct: 410 EIVLAETEKNVRENTIIASNTSTISITRLAKALQRPENFVGMHFFNPVHMMPLVEVIRGE 469
Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
TS+ + +GKT IV D PGF
Sbjct: 470 KTSEEAIATTVVLAQKMGKTPIVVNDCPGF 499
>sp|B0VE45|FADB_ACIBY Fatty acid oxidation complex subunit alpha OS=Acinetobacter
baumannii (strain AYE) GN=fadB PE=3 SV=1
Length = 717
Score = 100 bits (250), Expect = 3e-21, Method: Composition-based stats.
Identities = 58/150 (38%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Query: 9 EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
+E L+ + R K + GE TL+RI+ + E+ + D+VIEA+ EN +K
Sbjct: 356 KEANNLLTKQVERKKMKPVQMGE-----TLARIRPTLSYEE-FKEVDIVIEAVTENPKVK 409
Query: 69 HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
+ +K + I+ASNTS++SIT +A R + FVG+HFFNPV MM L+EVIR
Sbjct: 410 EIVLAETEKNVRENTIIASNTSTISITRLAKALQRPENFVGMHFFNPVHMMPLVEVIRGE 469
Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
TS+ + +GKT IV D PGF
Sbjct: 470 KTSEEAIATTVVLAQKMGKTPIVVNDCPGF 499
>sp|B7I3P1|FADB_ACIB5 Fatty acid oxidation complex subunit alpha OS=Acinetobacter
baumannii (strain AB0057) GN=fadB PE=3 SV=1
Length = 717
Score = 100 bits (250), Expect = 3e-21, Method: Composition-based stats.
Identities = 58/150 (38%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Query: 9 EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
+E L+ + R K + GE TL+RI+ + E+ + D+VIEA+ EN +K
Sbjct: 356 KEANNLLTKQVERKKMKPVQMGE-----TLARIRPTLSYEE-FKEVDIVIEAVTENPKVK 409
Query: 69 HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
+ +K + I+ASNTS++SIT +A R + FVG+HFFNPV MM L+EVIR
Sbjct: 410 EIVLAETEKNVRENTIIASNTSTISITRLAKALQRPENFVGMHFFNPVHMMPLVEVIRGE 469
Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
TS+ + +GKT IV D PGF
Sbjct: 470 KTSEEAIATTVVLAQKMGKTPIVVNDCPGF 499
>sp|B7H1I0|FADB_ACIB3 Fatty acid oxidation complex subunit alpha OS=Acinetobacter
baumannii (strain AB307-0294) GN=fadB PE=3 SV=1
Length = 717
Score = 100 bits (250), Expect = 3e-21, Method: Composition-based stats.
Identities = 58/150 (38%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Query: 9 EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
+E L+ + R K + GE TL+RI+ + E+ + D+VIEA+ EN +K
Sbjct: 356 KEANNLLTKQVERKKMKPVQMGE-----TLARIRPTLSYEE-FKEVDIVIEAVTENPKVK 409
Query: 69 HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
+ +K + I+ASNTS++SIT +A R + FVG+HFFNPV MM L+EVIR
Sbjct: 410 EIVLAETEKNVRENTIIASNTSTISITRLAKALQRPENFVGMHFFNPVHMMPLVEVIRGE 469
Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
TS+ + +GKT IV D PGF
Sbjct: 470 KTSEEAIATTVVLAQKMGKTPIVVNDCPGF 499
>sp|Q4FQC6|FADB_PSYA2 Fatty acid oxidation complex subunit alpha OS=Psychrobacter
arcticus (strain DSM 17307 / 273-4) GN=fadB PE=3 SV=1
Length = 719
Score = 100 bits (249), Expect = 4e-21, Method: Composition-based stats.
Identities = 58/149 (38%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 10 EGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69
E KL+ + R K + + GE TLSRI+ + D +++D+VIEA+VEN ++K
Sbjct: 357 EASKLLGKMVDRGKMTPAKMGE-----TLSRIRPTLNYGD-FAETDIVIEAVVENPNVKR 410
Query: 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTND 129
+ V+ + ILASNTS++SIT +A R + FVG+HFFNPV M L+EVIR
Sbjct: 411 AVLKEVEGLVKDDCILASNTSTISITFLAEALERPENFVGMHFFNPVHRMPLVEVIRGEK 470
Query: 130 TSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
+S+ +GK +V D PGF
Sbjct: 471 SSEEAIATTVALASKMGKVPVVVNDCPGF 499
>sp|Q6FF68|FADB_ACIAD Fatty acid oxidation complex subunit alpha OS=Acinetobacter sp.
(strain ADP1) GN=fadB PE=3 SV=1
Length = 717
Score = 100 bits (248), Expect = 5e-21, Method: Composition-based stats.
Identities = 58/150 (38%), Positives = 82/150 (54%), Gaps = 6/150 (4%)
Query: 9 EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK 68
+E L+ + R K + + GE TL+RI+ + D + D+VIEA+ EN IK
Sbjct: 356 QEANGLLTKQVERKKLTPAKMGE-----TLARIRPTLSY-DEFKEVDIVIEAVTENPKIK 409
Query: 69 HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTN 128
+ + + I+ASNTS++SIT +A R + FVG+HFFNPV MM L+EVIR
Sbjct: 410 EAVLADTEAKVRDNTIIASNTSTISITRLAKALKRPENFVGMHFFNPVHMMPLVEVIRGE 469
Query: 129 DTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
TS+ + +GKT IV D PGF
Sbjct: 470 QTSEEAVATTVVLAQKMGKTPIVVNDCPGF 499
>sp|A4STF2|FADB_AERS4 Fatty acid oxidation complex subunit alpha OS=Aeromonas salmonicida
(strain A449) GN=fadB PE=3 SV=1
Length = 715
Score = 99.8 bits (247), Expect = 7e-21, Method: Composition-based stats.
Identities = 60/151 (39%), Positives = 82/151 (54%), Gaps = 10/151 (6%)
Query: 10 EGEKLIDSTLS--RIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDI 67
E KL++ L RI G + I TLS D+V DLV+EA+VEN +
Sbjct: 356 EATKLLNGQLEKGRIDGIKMGQVLSAITPTLSY--------DNVKHVDLVVEAVVENPKV 407
Query: 68 KHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRT 127
K + V+ I A+LASNTS++ I+ +A R F G+HFFNPV M L+E+IR
Sbjct: 408 KAAVLGEVEGIIGDDAVLASNTSTIPISLLAKGLKRPQNFCGMHFFNPVHRMPLVEIIRG 467
Query: 128 NDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
TSD T N V + ++GK+ +V D PGF
Sbjct: 468 EQTSDETINRVVAYAAAMGKSPVVVNDCPGF 498
>sp|A4VKA3|FADB_PSEU5 Fatty acid oxidation complex subunit alpha OS=Pseudomonas stutzeri
(strain A1501) GN=fadB PE=3 SV=1
Length = 715
Score = 99.4 bits (246), Expect = 8e-21, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 6/155 (3%)
Query: 8 QEEGEKLIDSTLSRIKGSSKEEG----EKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVE 63
+EEG ++ S++ G E+G EK+ L+ I+ + D D+V+EA+VE
Sbjct: 346 REEGIQMGLDEASKLLGKRVEKGRLTPEKMAQ-ALNAIRPTMSYGD-FGNVDIVVEAVVE 403
Query: 64 NMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLE 123
N +KH + V+ AI+ASNTS++SI+ +A R + F G+HFFNPV MM L+E
Sbjct: 404 NPKVKHAVLAEVEGHVREDAIIASNTSTISISYLAQALKRPENFCGMHFFNPVHMMPLVE 463
Query: 124 VIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
VIR TS+ + K +GK+ +V D PGF
Sbjct: 464 VIRGEKTSETAIATTVAYAKKMGKSPVVVNDCPGF 498
>sp|B5FEW8|FADB_VIBFM Fatty acid oxidation complex subunit alpha OS=Vibrio fischeri
(strain MJ11) GN=fadB PE=3 SV=1
Length = 725
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 80/149 (53%), Gaps = 6/149 (4%)
Query: 10 EGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69
E KL++ L R + S + + L +T S S+ D+V+EA+VEN IK
Sbjct: 355 EASKLLNKQLERGRLSGLKMAQVLSSIT------PSLNYASIENKDIVVEAVVENPKIKA 408
Query: 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTND 129
+ V+ AILASNTS++ I+ +A R + F G+HFFNPV M L+EVIR
Sbjct: 409 AVLAEVENEVNEHAILASNTSTIPISLLAKSLKRPENFCGMHFFNPVHRMPLVEVIRGEK 468
Query: 130 TSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
TS T + V + +GKT IV D PGF
Sbjct: 469 TSQQTIDRVVAYASQMGKTPIVVNDCPGF 497
>sp|B5YY93|FADB_ECO5E Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=fadB PE=3 SV=1
Length = 729
Score = 99.0 bits (245), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/104 (44%), Positives = 64/104 (61%)
Query: 55 DLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFN 114
D+V+EAIVEN +K + ++ +LASNTS++ I+E+A+ R + F G+HFFN
Sbjct: 394 DVVVEAIVENPKVKKAVLAETEQKVRPDTVLASNTSTIPISELANALERPENFCGMHFFN 453
Query: 115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
PV M L+E+IR +SD T V W +GKT IV D PGF
Sbjct: 454 PVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGF 497
>sp|Q8X8I2|FADB_ECO57 Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O157:H7 GN=fadB PE=3 SV=1
Length = 729
Score = 99.0 bits (245), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/104 (44%), Positives = 64/104 (61%)
Query: 55 DLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFN 114
D+V+EAIVEN +K + ++ +LASNTS++ I+E+A+ R + F G+HFFN
Sbjct: 394 DVVVEAIVENPKVKKAVLAETEQKVRPDTVLASNTSTIPISELANALERPENFCGMHFFN 453
Query: 115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
PV M L+E+IR +SD T V W +GKT IV D PGF
Sbjct: 454 PVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGF 497
>sp|Q7MZ92|FADB_PHOLL Fatty acid oxidation complex subunit alpha OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=fadB PE=3
SV=1
Length = 728
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 67/109 (61%)
Query: 50 SVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVG 109
+ Q+ +V+EA+VEN IK + + + + +LASNTS++ I+E+A R + F G
Sbjct: 389 GIEQAQIVVEAVVENPKIKAAVLSETETLVNEDCVLASNTSTIPISELAKSLKRPENFCG 448
Query: 110 LHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
+HFFNPV M L+EVIR TS+ T + V + +GKT IV D PGF
Sbjct: 449 MHFFNPVHRMPLVEVIRGEKTSEKTISTVVAYASKMGKTPIVVNDCPGF 497
>sp|B7NV20|FADB_ECO7I Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=fadB PE=3 SV=1
Length = 729
Score = 98.6 bits (244), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 64/104 (61%)
Query: 55 DLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFN 114
D+V+EA+VEN +K + ++ +LASNTS++ I+E+A+ R + F G+HFFN
Sbjct: 394 DIVVEAVVENPKVKKAVLAETEQKVRPDTVLASNTSTIPISELANALERPENFCGMHFFN 453
Query: 115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
PV M L+E+IR +SD T V W +GKT IV D PGF
Sbjct: 454 PVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGF 497
>sp|B7NFE7|FADB_ECOLU Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=fadB PE=3 SV=1
Length = 729
Score = 98.6 bits (244), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 64/104 (61%)
Query: 55 DLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFN 114
D+V+EA+VEN +K + ++ +LASNTS++ I+E+A+ R + F G+HFFN
Sbjct: 394 DIVVEAVVENPKVKKAVLAETEQKVRPDTVLASNTSTIPISELANALERPENFCGMHFFN 453
Query: 115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
PV M L+E+IR +SD T V W +GKT IV D PGF
Sbjct: 454 PVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGF 497
>sp|Q83PG1|FADB_SHIFL Fatty acid oxidation complex subunit alpha OS=Shigella flexneri
GN=fadB PE=3 SV=4
Length = 729
Score = 98.6 bits (244), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 64/104 (61%)
Query: 55 DLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFN 114
D+V+EA+VEN +K + ++ +LASNTS++ I+E+A+ R + F G+HFFN
Sbjct: 394 DIVVEAVVENPKVKKAVLAETEQKVRQDTVLASNTSTIPISELANALERPENFCGMHFFN 453
Query: 115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
PV M L+E+IR +SD T V W +GKT IV D PGF
Sbjct: 454 PVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGF 497
>sp|Q0SZ36|FADB_SHIF8 Fatty acid oxidation complex subunit alpha OS=Shigella flexneri
serotype 5b (strain 8401) GN=fadB PE=3 SV=1
Length = 729
Score = 98.6 bits (244), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 64/104 (61%)
Query: 55 DLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFN 114
D+V+EA+VEN +K + ++ +LASNTS++ I+E+A+ R + F G+HFFN
Sbjct: 394 DIVVEAVVENPKVKKAVLAETEQKVRQDTVLASNTSTIPISELANALERPENFCGMHFFN 453
Query: 115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
PV M L+E+IR +SD T V W +GKT IV D PGF
Sbjct: 454 PVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGF 497
>sp|Q3YVC1|FADB_SHISS Fatty acid oxidation complex subunit alpha OS=Shigella sonnei
(strain Ss046) GN=fadB PE=3 SV=1
Length = 729
Score = 98.6 bits (244), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 64/104 (61%)
Query: 55 DLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFN 114
D+V+EA+VEN +K + ++ +LASNTS++ I+E+A+ R + F G+HFFN
Sbjct: 394 DIVVEAVVENPKVKKAVLAETEQKVRQDTVLASNTSTIPISELANALERPENFCGMHFFN 453
Query: 115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
PV M L+E+IR +SD T V W +GKT IV D PGF
Sbjct: 454 PVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGF 497
>sp|P21177|FADB_ECOLI Fatty acid oxidation complex subunit alpha OS=Escherichia coli
(strain K12) GN=fadB PE=1 SV=2
Length = 729
Score = 98.6 bits (244), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 64/104 (61%)
Query: 55 DLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFN 114
D+V+EA+VEN +K + ++ +LASNTS++ I+E+A+ R + F G+HFFN
Sbjct: 394 DIVVEAVVENPKVKKAVLAETEQKVRQDTVLASNTSTIPISELANALERPENFCGMHFFN 453
Query: 115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
PV M L+E+IR +SD T V W +GKT IV D PGF
Sbjct: 454 PVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGF 497
>sp|B1XAK8|FADB_ECODH Fatty acid oxidation complex subunit alpha OS=Escherichia coli
(strain K12 / DH10B) GN=fadB PE=3 SV=1
Length = 729
Score = 98.6 bits (244), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 64/104 (61%)
Query: 55 DLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFN 114
D+V+EA+VEN +K + ++ +LASNTS++ I+E+A+ R + F G+HFFN
Sbjct: 394 DIVVEAVVENPKVKKAVLAETEQKVRQDTVLASNTSTIPISELANALERPENFCGMHFFN 453
Query: 115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
PV M L+E+IR +SD T V W +GKT IV D PGF
Sbjct: 454 PVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGF 497
>sp|C5A020|FADB_ECOBW Fatty acid oxidation complex subunit alpha OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=fadB PE=3 SV=1
Length = 729
Score = 98.6 bits (244), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 64/104 (61%)
Query: 55 DLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFN 114
D+V+EA+VEN +K + ++ +LASNTS++ I+E+A+ R + F G+HFFN
Sbjct: 394 DIVVEAVVENPKVKKAVLAETEQKVRQDTVLASNTSTIPISELANALERPENFCGMHFFN 453
Query: 115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
PV M L+E+IR +SD T V W +GKT IV D PGF
Sbjct: 454 PVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGF 497
>sp|B6EGU2|FADB_ALISL Fatty acid oxidation complex subunit alpha OS=Aliivibrio
salmonicida (strain LFI1238) GN=fadB PE=3 SV=1
Length = 726
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 80/149 (53%), Gaps = 6/149 (4%)
Query: 10 EGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69
E KL++ L R + S + + L +T S G + D+++EA+VEN IK
Sbjct: 355 EASKLLNKQLERGRLSGLKMAQVLSSITPSLNYGG------IETKDVIVEAVVENPTIKA 408
Query: 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTND 129
+ V+ AILASNTS++ I+ +A R + F G+HFFNPV M L+EVIR
Sbjct: 409 AVLAEVENEVNEHAILASNTSTIPISLLAKSLKRPENFCGMHFFNPVHRMPLVEVIRGEK 468
Query: 130 TSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
TS T + V + +GKT IV D PGF
Sbjct: 469 TSQQTIDRVVAYASQMGKTPIVVNDCPGF 497
>sp|A4XSM8|FADB_PSEMY Fatty acid oxidation complex subunit alpha OS=Pseudomonas mendocina
(strain ymp) GN=fadB PE=3 SV=1
Length = 715
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 88/155 (56%), Gaps = 6/155 (3%)
Query: 8 QEEGEKLIDSTLSRIKGSSKEEGE----KLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVE 63
+EEG ++ + S++ G E+G K+ + L+ I+ + D D+V+EA+VE
Sbjct: 346 REEGIQMGLTEASKLLGKRVEKGRMTPAKMAE-ALNAIRPTMSYGD-FGNVDIVVEAVVE 403
Query: 64 NMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLE 123
N +K + V+ + AILASNTS++SI+ +A R + FVG+HFFNPV MM L+E
Sbjct: 404 NPKVKQIVLAEVEDVVREDAILASNTSTISISLLAQALKRPENFVGMHFFNPVHMMPLVE 463
Query: 124 VIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
VIR +S+ + K +GK IV D PGF
Sbjct: 464 VIRGEKSSEVAVATTVAYAKKMGKNPIVVNDCPGF 498
>sp|P28793|FADB_PSEFR Fatty acid oxidation complex subunit alpha OS=Pseudomonas fragi
GN=fadB PE=1 SV=1
Length = 715
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 64/104 (61%)
Query: 55 DLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFN 114
DLV+EA+VEN +K + V+ AILASNTS++SI+ +A R + FVG+HFFN
Sbjct: 395 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFN 454
Query: 115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
PV MM L+EVIR +SD + K +GK IV D PGF
Sbjct: 455 PVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCPGF 498
>sp|Q8BMS1|ECHA_MOUSE Trifunctional enzyme subunit alpha, mitochondrial OS=Mus musculus
GN=Hadha PE=1 SV=1
Length = 763
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 71/106 (66%)
Query: 53 QSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHF 112
++D+VIEA+ E++ +KHK+ V+ + P I ASNTS+L I +IA+V+ R +K +G+H+
Sbjct: 440 KADMVIEAVFEDLGVKHKVLKEVESVTPEHCIFASNTSALPINQIAAVSKRPEKVIGMHY 499
Query: 113 FNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
F+PV M+LLE+I T+ TS T + G GK IV KD PGF
Sbjct: 500 FSPVDKMQLLEIITTDKTSKDTTASAVAVGLRQGKVIIVVKDGPGF 545
>sp|B7VGL4|FADB_VIBSL Fatty acid oxidation complex subunit alpha OS=Vibrio splendidus
(strain LGP32) GN=fadB PE=3 SV=1
Length = 723
Score = 97.8 bits (242), Expect = 2e-20, Method: Composition-based stats.
Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 10 EGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69
E KL++ LSR + +G K+ + LS I S V QSD+++EA+VEN +K
Sbjct: 356 EASKLLNKRLSR----GRLDGFKMAGI-LSSITPSLHYA-GVEQSDVIVEAVVENPKVKA 409
Query: 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTND 129
+ + V+ + +L SNTS++ I +A R + F G+HFFNPV M L+E+IR
Sbjct: 410 AVLSEVEGLVGEDTVLTSNTSTIPINLLAKSLKRPENFCGMHFFNPVHRMPLVEIIRGEH 469
Query: 130 TSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
TS+ T N V + +GK+ IV D PGF
Sbjct: 470 TSEETINRVVAYAAKMGKSPIVVNDCPGF 498
>sp|A8G8D1|FADB_SERP5 Fatty acid oxidation complex subunit alpha OS=Serratia
proteamaculans (strain 568) GN=fadB PE=3 SV=1
Length = 729
Score = 97.8 bits (242), Expect = 2e-20, Method: Composition-based stats.
Identities = 56/149 (37%), Positives = 85/149 (57%), Gaps = 6/149 (4%)
Query: 10 EGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69
E KL++ L R K +G K+ + LS I+ + + ++ +++EA+VEN IK
Sbjct: 355 EAAKLLNKQLER----GKLDGMKMAQV-LSTIQPTLDYA-GIERAQVIVEAVVENPKIKA 408
Query: 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTND 129
+ + V+ + + +LASNTS++ I +A R F G+HFFNPV M L+E+IR
Sbjct: 409 AVLSEVEGLIGENTVLASNTSTIPINHLAKSLKRPQNFCGMHFFNPVHRMPLVEIIRGEQ 468
Query: 130 TSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
TSD+T AV + +GKT IV D PGF
Sbjct: 469 TSDSTIAAVVAYASRMGKTPIVVNDCPGF 497
>sp|A9KU91|FADB_SHEB9 Fatty acid oxidation complex subunit alpha OS=Shewanella baltica
(strain OS195) GN=fadB PE=3 SV=1
Length = 716
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 6/149 (4%)
Query: 10 EGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69
E KL+ + ++R + + ++ + L ++T S + K SD+V+EA+VE+ IK
Sbjct: 355 EAAKLLSAQVARGRSTPEKMAKVLNNITPSLDYAAIK------HSDVVVEAVVEHPKIKA 408
Query: 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTND 129
++ V+ AI+ASNTS++SI +A + ++F G+HFFNPV M L+EVIR
Sbjct: 409 QVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEH 468
Query: 130 TSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
+S+ T +V + +GKT IV D PGF
Sbjct: 469 SSEETIASVVAYASKMGKTPIVVNDCPGF 497
>sp|A1RDW6|FADB_SHESW Fatty acid oxidation complex subunit alpha OS=Shewanella sp.
(strain W3-18-1) GN=fadB PE=3 SV=1
Length = 716
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 6/149 (4%)
Query: 10 EGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69
E KL+ + ++R + + ++ + L ++T S + K SD+V+EA+VE+ IK
Sbjct: 355 EAAKLLSAQVARGRSTPEKMAKVLNNITPSLDYAALK------HSDVVVEAVVEHPKIKA 408
Query: 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTND 129
++ V+ AI+ASNTS++SI +A + ++F G+HFFNPV M L+EVIR
Sbjct: 409 QVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEH 468
Query: 130 TSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
+S+ T +V + +GKT IV D PGF
Sbjct: 469 SSEETIASVVAYASKMGKTPIVVNDCPGF 497
>sp|A4Y1B6|FADB_SHEPC Fatty acid oxidation complex subunit alpha OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadB PE=3
SV=1
Length = 716
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 6/149 (4%)
Query: 10 EGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69
E KL+ + ++R + + ++ + L ++T S + K SD+V+EA+VE+ IK
Sbjct: 355 EAAKLLSAQVARGRSTPEKMAKVLNNITPSLDYAALK------HSDVVVEAVVEHPKIKA 408
Query: 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTND 129
++ V+ AI+ASNTS++SI +A + ++F G+HFFNPV M L+EVIR
Sbjct: 409 QVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEH 468
Query: 130 TSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
+S+ T +V + +GKT IV D PGF
Sbjct: 469 SSEETIASVVAYASKMGKTPIVVNDCPGF 497
>sp|A6WHA0|FADB_SHEB8 Fatty acid oxidation complex subunit alpha OS=Shewanella baltica
(strain OS185) GN=fadB PE=3 SV=1
Length = 716
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 6/149 (4%)
Query: 10 EGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69
E KL+ + ++R + + ++ + L ++T S + K SD+V+EA+VE+ IK
Sbjct: 355 EAAKLLSAQVARGRSTPEKMAKVLNNITPSLDYAAIK------HSDVVVEAVVEHPKIKA 408
Query: 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTND 129
++ V+ AI+ASNTS++SI +A + ++F G+HFFNPV M L+EVIR
Sbjct: 409 QVLAEVEGYVSEDAIIASNTSTISINLLAKSMKKPERFCGMHFFNPVHKMPLVEVIRGEH 468
Query: 130 TSDATYNAVTEWGKSIGKTTIVCKDTPGF 158
+S+ T +V + +GKT IV D PGF
Sbjct: 469 SSEETIASVVAYASKMGKTPIVVNDCPGF 497
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,211,269
Number of Sequences: 539616
Number of extensions: 1879461
Number of successful extensions: 5773
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 5476
Number of HSP's gapped (non-prelim): 310
length of query: 160
length of database: 191,569,459
effective HSP length: 108
effective length of query: 52
effective length of database: 133,290,931
effective search space: 6931128412
effective search space used: 6931128412
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)