Query psy3942
Match_columns 160
No_of_seqs 135 out of 1047
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 21:16:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1250 FadB 3-hydroxyacyl-CoA 100.0 3.9E-49 8.5E-54 326.9 15.9 157 2-160 22-189 (307)
2 PF02737 3HCDH_N: 3-hydroxyacy 100.0 1.4E-46 3.1E-51 291.3 17.1 152 2-155 18-180 (180)
3 TIGR02437 FadB fatty oxidation 100.0 1.2E-44 2.5E-49 329.0 17.6 158 1-160 331-499 (714)
4 PRK11730 fadB multifunctional 100.0 2.8E-44 6E-49 326.7 16.9 158 1-160 331-499 (715)
5 PRK07066 3-hydroxybutyryl-CoA 100.0 4.7E-44 1E-48 299.1 16.8 154 2-160 26-191 (321)
6 TIGR02441 fa_ox_alpha_mit fatt 100.0 6.1E-44 1.3E-48 325.1 17.0 157 2-160 354-521 (737)
7 TIGR02440 FadJ fatty oxidation 100.0 2.2E-43 4.9E-48 320.1 17.2 157 2-160 323-491 (699)
8 PRK11154 fadJ multifunctional 100.0 8.6E-43 1.9E-47 316.6 16.6 157 2-160 328-496 (708)
9 KOG2304|consensus 100.0 3.2E-44 7E-49 284.5 6.1 159 2-160 30-203 (298)
10 PRK07819 3-hydroxybutyryl-CoA 100.0 3E-41 6.5E-46 278.0 16.8 157 2-160 24-193 (286)
11 PRK08269 3-hydroxybutyryl-CoA 100.0 5.2E-41 1.1E-45 280.1 17.2 149 11-160 36-186 (314)
12 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 1.2E-38 2.6E-43 280.1 17.9 157 2-160 24-191 (503)
13 PRK08268 3-hydroxy-acyl-CoA de 100.0 5.1E-38 1.1E-42 276.4 18.0 157 2-160 26-193 (507)
14 PRK08293 3-hydroxybutyryl-CoA 100.0 1.5E-35 3.3E-40 243.4 18.1 159 2-160 22-192 (287)
15 PRK05808 3-hydroxybutyryl-CoA 100.0 1.9E-34 4E-39 236.2 17.4 157 2-160 22-189 (282)
16 PRK06035 3-hydroxyacyl-CoA deh 100.0 5.3E-34 1.1E-38 234.6 18.0 157 2-160 22-192 (291)
17 PRK09260 3-hydroxybutyryl-CoA 100.0 4.4E-33 9.5E-38 228.8 17.6 158 2-160 20-188 (288)
18 PRK07530 3-hydroxybutyryl-CoA 100.0 9.4E-33 2E-37 227.1 17.8 157 2-160 23-190 (292)
19 KOG2305|consensus 100.0 8.5E-34 1.8E-38 225.5 8.2 159 1-159 21-191 (313)
20 PLN02545 3-hydroxybutyryl-CoA 100.0 3E-32 6.4E-37 224.4 17.2 157 2-160 23-190 (295)
21 KOG1683|consensus 100.0 4.6E-33 1E-37 232.9 4.1 157 2-160 9-176 (380)
22 PRK06129 3-hydroxyacyl-CoA deh 100.0 4.7E-29 1E-33 206.9 17.5 158 2-160 21-190 (308)
23 PRK07531 bifunctional 3-hydrox 100.0 1E-28 2.3E-33 216.8 16.5 124 37-160 64-188 (495)
24 PRK06130 3-hydroxybutyryl-CoA 99.9 1.4E-25 3.1E-30 185.6 17.5 125 36-160 62-187 (311)
25 PRK08268 3-hydroxy-acyl-CoA de 99.7 4.3E-18 9.4E-23 150.2 8.8 84 77-160 336-419 (507)
26 cd05297 GH4_alpha_glucosidase_ 99.4 9.9E-15 2.2E-19 126.4 -1.9 109 39-149 60-185 (423)
27 PRK11199 tyrA bifunctional cho 99.2 1.5E-10 3.2E-15 99.0 9.0 102 46-152 135-240 (374)
28 PRK07417 arogenate dehydrogena 99.0 3E-09 6.4E-14 87.2 9.7 106 44-153 49-166 (279)
29 PRK12557 H(2)-dependent methyl 98.6 3.1E-07 6.8E-12 77.9 11.1 112 40-153 68-193 (342)
30 PRK06545 prephenate dehydrogen 98.6 3.3E-07 7.1E-12 77.9 10.7 107 44-152 51-172 (359)
31 cd01339 LDH-like_MDH L-lactate 98.6 6.9E-08 1.5E-12 80.0 6.0 92 39-149 53-160 (300)
32 PLN02688 pyrroline-5-carboxyla 98.5 1.4E-06 2.9E-11 70.6 11.2 110 40-153 48-158 (266)
33 PTZ00082 L-lactate dehydrogena 98.5 8.9E-08 1.9E-12 80.5 4.2 72 39-111 61-153 (321)
34 PRK11559 garR tartronate semia 98.5 3.6E-07 7.8E-12 75.1 7.6 112 40-158 45-169 (296)
35 TIGR01505 tartro_sem_red 2-hyd 98.5 3.8E-07 8.3E-12 74.9 7.5 107 44-157 46-165 (291)
36 PRK11880 pyrroline-5-carboxyla 98.4 5.1E-06 1.1E-10 67.2 11.7 109 40-153 49-158 (267)
37 PTZ00117 malate dehydrogenase; 98.4 4.8E-07 1E-11 75.9 5.2 72 39-111 60-147 (319)
38 PRK08655 prephenate dehydrogen 98.4 3.9E-06 8.5E-11 73.3 10.8 110 41-152 46-161 (437)
39 PRK07502 cyclohexadienyl dehyd 98.3 6.5E-06 1.4E-10 68.2 11.2 107 43-152 56-177 (307)
40 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.3 5.6E-07 1.2E-11 79.9 4.2 78 82-160 341-418 (503)
41 PRK06223 malate dehydrogenase; 98.0 1.2E-05 2.5E-10 66.7 6.4 92 39-149 57-164 (307)
42 PLN02256 arogenate dehydrogena 98.0 7.3E-05 1.6E-09 62.5 10.9 109 41-152 79-202 (304)
43 PRK14806 bifunctional cyclohex 97.9 9.3E-05 2E-09 68.1 9.5 108 43-152 53-175 (735)
44 PRK08507 prephenate dehydrogen 97.7 0.00037 8.1E-09 56.9 10.4 104 44-153 50-167 (275)
45 PF02153 PDH: Prephenate dehyd 97.7 0.00041 8.8E-09 56.4 10.2 102 49-152 41-156 (258)
46 cd00650 LDH_MDH_like NAD-depen 97.7 4.3E-05 9.4E-10 62.1 3.7 72 39-111 56-144 (263)
47 PRK07679 pyrroline-5-carboxyla 97.6 0.00084 1.8E-08 55.0 10.7 110 40-152 52-162 (279)
48 COG0287 TyrA Prephenate dehydr 97.5 0.0023 4.9E-08 53.1 11.3 102 49-152 60-169 (279)
49 PRK07634 pyrroline-5-carboxyla 97.2 0.003 6.4E-08 50.3 9.0 106 41-151 54-162 (245)
50 PRK08818 prephenate dehydrogen 97.1 0.005 1.1E-07 53.0 10.1 102 45-152 43-153 (370)
51 TIGR01724 hmd_rel H2-forming N 97.1 0.0054 1.2E-07 52.0 9.9 110 41-152 69-192 (341)
52 PRK15057 UDP-glucose 6-dehydro 97.1 0.0046 9.9E-08 53.4 9.3 102 38-147 58-181 (388)
53 PRK00094 gpsA NAD(P)H-dependen 96.7 0.016 3.6E-07 47.7 10.0 111 40-157 58-182 (325)
54 PRK08229 2-dehydropantoate 2-r 96.7 0.016 3.4E-07 48.4 9.8 112 39-156 60-179 (341)
55 PRK06476 pyrroline-5-carboxyla 96.7 0.026 5.5E-07 45.6 10.6 102 41-152 49-150 (258)
56 PLN02712 arogenate dehydrogena 96.7 0.023 5E-07 52.4 11.2 110 41-152 412-535 (667)
57 PRK07680 late competence prote 96.6 0.028 6E-07 45.8 10.3 109 40-153 49-158 (273)
58 PRK06928 pyrroline-5-carboxyla 96.6 0.037 8E-07 45.4 10.7 108 41-151 52-160 (277)
59 TIGR00112 proC pyrroline-5-car 96.5 0.051 1.1E-06 43.8 11.2 109 41-151 31-140 (245)
60 TIGR01723 hmd_TIGR 5,10-methen 96.5 0.1 2.2E-06 43.7 12.6 111 39-152 125-239 (340)
61 PRK12491 pyrroline-5-carboxyla 96.4 0.057 1.2E-06 44.3 11.0 110 41-153 51-161 (272)
62 PRK15461 NADH-dependent gamma- 96.2 0.028 6.1E-07 46.4 8.0 110 41-154 45-163 (296)
63 TIGR02354 thiF_fam2 thiamine b 95.9 0.015 3.3E-07 45.7 5.0 37 50-87 107-143 (200)
64 TIGR03026 NDP-sugDHase nucleot 95.9 0.029 6.3E-07 48.4 7.0 113 39-154 62-200 (411)
65 PRK05479 ketol-acid reductoiso 95.6 0.11 2.4E-06 44.1 9.4 106 40-150 61-177 (330)
66 PRK14619 NAD(P)H-dependent gly 95.5 0.12 2.5E-06 43.0 8.9 108 45-157 39-158 (308)
67 TIGR01692 HIBADH 3-hydroxyisob 95.4 0.093 2E-06 43.0 8.0 105 41-154 40-158 (288)
68 PLN02712 arogenate dehydrogena 95.3 0.25 5.3E-06 45.7 11.1 110 41-152 95-218 (667)
69 PTZ00431 pyrroline carboxylate 95.0 0.48 1E-05 38.4 11.1 106 43-151 47-153 (260)
70 PRK14618 NAD(P)H-dependent gly 95.0 0.097 2.1E-06 43.7 7.1 108 40-157 61-181 (328)
71 PRK00961 H(2)-dependent methyl 95.0 0.65 1.4E-05 38.9 11.6 141 9-152 94-241 (342)
72 PRK12439 NAD(P)H-dependent gly 94.2 0.18 3.9E-06 42.6 6.9 114 39-158 63-188 (341)
73 cd05296 GH4_P_beta_glucosidase 93.9 0.13 2.8E-06 45.0 5.6 68 40-110 62-165 (419)
74 TIGR01915 npdG NADPH-dependent 93.6 1.2 2.6E-05 35.0 10.2 101 47-152 62-187 (219)
75 cd05197 GH4_glycoside_hydrolas 93.5 0.23 5E-06 43.5 6.4 69 40-110 61-165 (425)
76 COG4007 Predicted dehydrogenas 93.4 0.94 2E-05 37.7 9.4 112 40-152 69-193 (340)
77 TIGR01763 MalateDH_bact malate 93.4 0.12 2.5E-06 43.2 4.3 72 38-110 55-142 (305)
78 PRK11861 bifunctional prephena 93.3 0.55 1.2E-05 43.3 8.8 87 66-152 8-109 (673)
79 COG2084 MmsB 3-hydroxyisobutyr 93.1 0.32 6.9E-06 40.6 6.4 109 41-155 45-164 (286)
80 PRK06444 prephenate dehydrogen 93.0 1.3 2.7E-05 34.9 9.3 87 51-152 29-119 (197)
81 PF01210 NAD_Gly3P_dh_N: NAD-d 91.9 0.25 5.5E-06 36.9 4.0 52 39-92 55-106 (157)
82 PF02056 Glyco_hydro_4: Family 91.8 0.17 3.7E-06 39.5 3.1 69 39-110 59-166 (183)
83 TIGR00465 ilvC ketol-acid redu 91.8 3.3 7.3E-05 34.8 11.0 105 41-148 48-161 (314)
84 PRK15059 tartronate semialdehy 90.7 1.2 2.7E-05 36.7 7.3 109 41-154 43-161 (292)
85 PRK15076 alpha-galactosidase; 90.3 0.6 1.3E-05 40.9 5.4 69 39-110 61-168 (431)
86 cd05294 LDH-like_MDH_nadp A la 90.2 1.2 2.6E-05 37.2 6.9 69 40-110 60-145 (309)
87 COG0345 ProC Pyrroline-5-carbo 89.6 6.6 0.00014 32.4 10.6 104 44-151 53-157 (266)
88 PF03721 UDPG_MGDP_dh_N: UDP-g 88.6 0.56 1.2E-05 36.4 3.5 58 39-96 62-128 (185)
89 cd00300 LDH_like L-lactate deh 88.4 1.6 3.6E-05 36.2 6.4 90 40-149 54-160 (300)
90 PTZ00142 6-phosphogluconate de 88.2 3.7 8.1E-05 36.5 8.8 99 41-148 51-162 (470)
91 COG0240 GpsA Glycerol-3-phosph 87.5 3.2 7E-05 35.3 7.6 114 39-157 57-181 (329)
92 cd05298 GH4_GlvA_pagL_like Gly 87.2 3.2 6.9E-05 36.6 7.8 68 40-110 61-165 (437)
93 PLN02353 probable UDP-glucose 86.6 6.9 0.00015 34.8 9.6 112 40-152 65-206 (473)
94 PRK12490 6-phosphogluconate de 85.5 3.9 8.5E-05 33.7 7.1 106 41-154 44-164 (299)
95 PRK09599 6-phosphogluconate de 85.3 3.3 7.1E-05 34.2 6.6 107 40-154 43-165 (301)
96 TIGR00872 gnd_rel 6-phosphoglu 85.2 7.5 0.00016 32.0 8.6 100 50-154 56-163 (298)
97 COG1004 Ugd Predicted UDP-gluc 84.9 1.1 2.4E-05 39.1 3.6 56 39-95 62-125 (414)
98 COG2085 Predicted dinucleotide 84.7 10 0.00022 30.3 8.8 110 39-153 47-179 (211)
99 PRK12480 D-lactate dehydrogena 84.4 2.2 4.9E-05 36.0 5.3 62 41-102 186-249 (330)
100 PLN00135 malate dehydrogenase 84.4 3 6.6E-05 35.0 6.0 71 39-110 44-132 (309)
101 PF10727 Rossmann-like: Rossma 84.4 2.8 6.1E-05 30.7 5.1 66 45-112 60-127 (127)
102 COG4074 Mth H2-forming N5,N10- 82.7 9.5 0.00021 31.3 7.9 102 41-145 127-232 (343)
103 TIGR03376 glycerol3P_DH glycer 82.3 2.5 5.3E-05 36.0 4.7 112 39-157 68-197 (342)
104 TIGR01756 LDH_protist lactate 82.2 6.4 0.00014 33.1 7.1 89 43-149 50-155 (313)
105 PLN02350 phosphogluconate dehy 80.8 14 0.0003 33.2 9.0 102 42-148 58-168 (493)
106 PRK11064 wecC UDP-N-acetyl-D-m 80.0 20 0.00043 31.2 9.6 108 39-153 65-203 (415)
107 cd05291 HicDH_like L-2-hydroxy 79.2 6.6 0.00014 32.5 6.2 65 44-110 60-141 (306)
108 KOG0409|consensus 78.8 5.8 0.00013 33.6 5.6 103 45-153 83-197 (327)
109 PRK00066 ldh L-lactate dehydro 78.6 6.5 0.00014 32.9 6.0 65 44-110 65-146 (315)
110 cd05293 LDH_1 A subgroup of L- 78.5 7.7 0.00017 32.5 6.4 70 40-110 59-144 (312)
111 PLN00106 malate dehydrogenase 78.3 7.2 0.00016 33.0 6.2 66 45-110 78-163 (323)
112 TIGR01771 L-LDH-NAD L-lactate 77.7 6.1 0.00013 32.9 5.5 86 44-149 56-158 (299)
113 PLN02602 lactate dehydrogenase 76.9 11 0.00023 32.3 6.9 70 40-110 93-178 (350)
114 cd05292 LDH_2 A subgroup of L- 75.2 8.9 0.00019 31.9 5.9 66 44-110 59-140 (308)
115 PTZ00345 glycerol-3-phosphate 74.4 4.8 0.0001 34.7 4.1 112 39-157 79-206 (365)
116 cd01336 MDH_cytoplasmic_cytoso 74.3 14 0.0003 31.2 6.8 91 39-149 64-173 (325)
117 PRK12921 2-dehydropantoate 2-r 73.1 38 0.00082 27.4 9.1 110 43-155 58-178 (305)
118 COG0677 WecC UDP-N-acetyl-D-ma 73.1 67 0.0014 28.4 12.5 114 37-153 69-206 (436)
119 TIGR01757 Malate-DH_plant mala 72.7 19 0.00042 31.3 7.5 92 39-149 106-215 (387)
120 COG2006 Uncharacterized conser 72.0 5.8 0.00013 33.1 3.9 31 127-158 55-85 (293)
121 cd01487 E1_ThiF_like E1_ThiF_l 71.9 9.7 0.00021 29.0 5.0 29 49-78 84-112 (174)
122 PRK08644 thiamine biosynthesis 71.7 8.4 0.00018 30.4 4.7 40 49-89 113-152 (212)
123 PRK06522 2-dehydropantoate 2-r 69.5 17 0.00038 29.3 6.3 57 42-101 56-113 (304)
124 PRK05442 malate dehydrogenase; 69.0 11 0.00024 31.8 5.2 45 44-89 72-130 (326)
125 PRK05086 malate dehydrogenase; 68.8 12 0.00026 31.3 5.2 47 44-90 60-121 (312)
126 cd00704 MDH Malate dehydrogena 68.1 13 0.00027 31.4 5.3 43 44-87 68-124 (323)
127 TIGR01759 MalateDH-SF1 malate 66.8 7.5 0.00016 32.8 3.7 45 44-89 71-129 (323)
128 PF03446 NAD_binding_2: NAD bi 66.5 4.3 9.4E-05 30.3 2.0 105 39-150 43-158 (163)
129 PRK03170 dihydrodipicolinate s 62.0 11 0.00023 30.9 3.7 81 64-157 52-137 (292)
130 TIGR01758 MDH_euk_cyt malate d 61.8 72 0.0016 26.9 8.7 90 39-149 61-170 (324)
131 PF00056 Ldh_1_N: lactate/mala 61.8 9 0.00019 28.1 2.9 62 45-109 62-141 (141)
132 COG1486 CelF Alpha-galactosida 59.7 13 0.00029 32.9 4.0 55 10-73 43-107 (442)
133 PF01113 DapB_N: Dihydrodipico 59.1 11 0.00024 27.0 2.9 54 40-98 54-107 (124)
134 COG0039 Mdh Malate/lactate deh 59.0 18 0.0004 30.6 4.6 65 45-110 62-142 (313)
135 PRK08605 D-lactate dehydrogena 58.9 14 0.0003 31.1 3.9 61 41-101 188-250 (332)
136 PRK15469 ghrA bifunctional gly 56.0 21 0.00045 29.9 4.5 58 45-102 182-241 (312)
137 PLN02858 fructose-bisphosphate 55.9 41 0.00089 34.0 7.1 110 43-157 370-491 (1378)
138 cd01338 MDH_choloroplast_like 55.8 31 0.00067 29.1 5.5 44 44-88 70-127 (322)
139 PLN02858 fructose-bisphosphate 55.7 44 0.00095 33.9 7.2 107 41-152 48-166 (1378)
140 PRK15182 Vi polysaccharide bio 55.6 1.4E+02 0.0031 26.1 11.8 111 38-153 62-199 (425)
141 PF00670 AdoHcyase_NAD: S-aden 55.1 30 0.00064 26.5 4.8 62 34-100 60-124 (162)
142 cd05290 LDH_3 A subgroup of L- 54.0 47 0.001 27.7 6.3 87 44-149 60-164 (307)
143 PRK06249 2-dehydropantoate 2-r 52.8 1.3E+02 0.0028 24.7 11.7 111 42-156 62-188 (313)
144 PTZ00325 malate dehydrogenase; 52.7 37 0.00081 28.6 5.5 63 47-110 71-153 (321)
145 cd05295 MDH_like Malate dehydr 52.6 14 0.00031 32.8 3.0 72 39-110 185-275 (452)
146 KOG2711|consensus 50.7 29 0.00063 30.0 4.5 53 40-94 92-144 (372)
147 TIGR00683 nanA N-acetylneurami 49.6 49 0.0011 27.2 5.7 84 64-158 52-139 (290)
148 TIGR02313 HpaI-NOT-DapA 2,4-di 48.9 27 0.00059 28.8 4.0 83 64-158 51-138 (294)
149 PRK06436 glycerate dehydrogena 48.6 1.4E+02 0.003 24.9 8.2 95 44-138 164-268 (303)
150 PF04989 CmcI: Cephalosporin h 48.4 8 0.00017 30.8 0.8 83 72-155 24-119 (206)
151 PRK14620 NAD(P)H-dependent gly 47.0 74 0.0016 26.2 6.4 51 40-92 57-109 (326)
152 TIGR01327 PGDH D-3-phosphoglyc 46.8 76 0.0016 28.5 6.8 62 41-102 181-244 (525)
153 PLN00112 malate dehydrogenase 46.7 50 0.0011 29.3 5.5 47 39-86 162-223 (444)
154 PRK05225 ketol-acid reductoiso 45.7 31 0.00066 31.0 4.0 45 40-87 85-129 (487)
155 cd00950 DHDPS Dihydrodipicolin 44.8 99 0.0021 25.0 6.7 81 64-157 51-136 (284)
156 PF03447 NAD_binding_3: Homose 43.5 52 0.0011 22.7 4.3 41 35-76 39-81 (117)
157 PF13822 ACC_epsilon: Acyl-CoA 42.8 39 0.00085 21.5 3.2 29 119-147 1-29 (62)
158 COG0329 DapA Dihydrodipicolina 42.6 1.6E+02 0.0034 24.5 7.7 82 63-158 54-141 (299)
159 PF00356 LacI: Bacterial regul 41.8 26 0.00057 20.9 2.2 22 128-149 24-45 (46)
160 TIGR01772 MDH_euk_gproteo mala 41.7 75 0.0016 26.7 5.6 62 47-110 62-144 (312)
161 PRK07574 formate dehydrogenase 39.7 73 0.0016 27.6 5.4 62 41-102 236-299 (385)
162 PLN03139 formate dehydrogenase 39.5 74 0.0016 27.6 5.4 62 41-102 243-306 (386)
163 TIGR00873 gnd 6-phosphoglucona 39.2 1.2E+02 0.0027 26.9 6.9 104 41-149 48-160 (467)
164 PLN02527 aspartate carbamoyltr 38.1 37 0.0008 28.4 3.3 21 39-59 204-224 (306)
165 PRK13243 glyoxylate reductase; 37.8 41 0.0009 28.3 3.5 58 45-102 196-255 (333)
166 cd00952 CHBPH_aldolase Trans-o 37.8 1.9E+02 0.0041 24.0 7.4 83 64-158 59-146 (309)
167 PF07991 IlvN: Acetohydroxy ac 36.5 36 0.00078 26.2 2.7 47 38-87 46-93 (165)
168 PF05430 Methyltransf_30: S-ad 36.4 13 0.00028 27.0 0.2 30 69-98 70-99 (124)
169 TIGR00745 apbA_panE 2-dehydrop 35.6 2.2E+02 0.0048 22.5 10.4 111 40-155 47-168 (293)
170 cd00954 NAL N-Acetylneuraminic 35.5 1.3E+02 0.0027 24.6 6.0 83 64-158 52-139 (288)
171 PRK04147 N-acetylneuraminate l 35.1 1.1E+02 0.0023 25.1 5.5 81 64-157 55-140 (293)
172 cd01337 MDH_glyoxysomal_mitoch 35.0 1.2E+02 0.0026 25.5 5.8 62 47-110 63-145 (310)
173 PF10644 Misat_Tub_SegII: Misa 34.7 9.5 0.00021 27.2 -0.7 15 101-115 8-22 (115)
174 cd00408 DHDPS-like Dihydrodipi 34.7 1.1E+02 0.0024 24.6 5.5 83 64-158 48-134 (281)
175 COG0565 LasT rRNA methylase [T 34.6 27 0.00059 28.5 1.8 67 34-100 53-128 (242)
176 PRK09287 6-phosphogluconate de 34.6 1.4E+02 0.0031 26.4 6.5 100 41-149 39-151 (459)
177 PF09419 PGP_phosphatase: Mito 34.2 1.5E+02 0.0033 22.6 5.9 27 67-93 63-90 (168)
178 COG2265 TrmA SAM-dependent met 33.7 34 0.00073 30.2 2.4 109 40-151 64-183 (432)
179 PRK15409 bifunctional glyoxyla 33.5 1.6E+02 0.0035 24.7 6.4 64 45-109 192-257 (323)
180 PF00185 OTCace: Aspartate/orn 33.4 26 0.00056 26.3 1.4 25 39-63 59-83 (158)
181 PRK08410 2-hydroxyacid dehydro 32.0 1.8E+02 0.0039 24.2 6.4 69 45-114 188-259 (311)
182 PRK14733 coaE dephospho-CoA ki 30.7 79 0.0017 24.9 3.9 44 35-78 155-199 (204)
183 COG3931 Predicted N-formylglut 30.5 2E+02 0.0043 23.7 6.1 43 102-144 142-186 (263)
184 PF03059 NAS: Nicotianamine sy 30.1 84 0.0018 26.1 4.1 39 50-88 189-229 (276)
185 PF13460 NAD_binding_10: NADH( 29.6 66 0.0014 23.5 3.1 45 47-91 54-101 (183)
186 PHA02978 hypothetical protein; 29.5 33 0.00072 24.7 1.4 13 52-64 110-122 (135)
187 PLN02417 dihydrodipicolinate s 28.9 78 0.0017 25.9 3.7 81 64-158 52-136 (280)
188 COG2266 GTP:adenosylcobinamide 28.9 2.8E+02 0.0061 21.6 6.8 64 70-156 32-97 (177)
189 TIGR00674 dapA dihydrodipicoli 28.3 1.4E+02 0.003 24.3 5.0 82 63-157 48-134 (285)
190 PRK03620 5-dehydro-4-deoxygluc 27.7 1.1E+02 0.0023 25.3 4.4 81 64-158 58-143 (303)
191 PF13344 Hydrolase_6: Haloacid 27.7 63 0.0014 22.2 2.5 33 68-101 19-51 (101)
192 PLN02493 probable peroxisomal 27.6 1.5E+02 0.0033 25.6 5.3 61 81-158 99-161 (367)
193 PF13241 NAD_binding_7: Putati 27.5 1.2E+02 0.0026 20.7 3.9 38 39-77 45-83 (103)
194 cd01134 V_A-ATPase_A V/A-type 26.8 2.9E+02 0.0062 24.1 6.8 43 52-94 181-232 (369)
195 KOG3124|consensus 26.6 3.8E+02 0.0082 22.3 8.1 99 43-148 52-155 (267)
196 cd00640 Trp-synth-beta_II Tryp 26.2 87 0.0019 24.5 3.5 66 69-147 143-211 (244)
197 cd00762 NAD_bind_malic_enz NAD 25.8 2.4E+02 0.0053 23.1 6.0 57 45-101 96-158 (254)
198 PF14794 DUF4479: Domain of un 25.7 1E+02 0.0023 20.3 3.2 50 104-154 23-72 (73)
199 PRK13403 ketol-acid reductoiso 25.4 1.4E+02 0.003 25.6 4.6 43 41-86 60-103 (335)
200 PRK10433 putative RNA methyltr 25.4 51 0.0011 26.5 1.9 67 34-100 51-127 (228)
201 PF09954 DUF2188: Uncharacteri 25.3 1.2E+02 0.0026 18.8 3.3 32 127-158 24-55 (62)
202 PRK00048 dihydrodipicolinate r 25.3 1.4E+02 0.003 24.0 4.5 52 41-97 48-99 (257)
203 cd00419 Ferrochelatase_C Ferro 24.8 2.8E+02 0.006 20.1 7.5 80 70-160 6-103 (135)
204 PRK14734 coaE dephospho-CoA ki 24.3 1.1E+02 0.0024 23.6 3.7 45 36-80 153-197 (200)
205 PRK13980 NAD synthetase; Provi 24.1 2.6E+02 0.0057 22.5 6.0 58 82-152 31-91 (265)
206 COG0796 MurI Glutamate racemas 24.0 69 0.0015 26.6 2.5 90 66-159 51-149 (269)
207 KOG4716|consensus 23.9 17 0.00036 31.8 -1.1 45 103-151 436-480 (503)
208 PLN02926 histidinol dehydrogen 23.8 71 0.0015 28.3 2.7 97 39-138 306-404 (431)
209 PF01118 Semialdhyde_dh: Semia 23.4 60 0.0013 22.7 1.8 50 41-96 54-104 (121)
210 PLN02535 glycolate oxidase 23.4 2.3E+02 0.005 24.5 5.7 60 81-157 101-162 (364)
211 TIGR02371 ala_DH_arch alanine 23.1 71 0.0015 26.8 2.5 52 41-98 180-232 (325)
212 cd02005 TPP_PDC_IPDC Thiamine 23.0 1.6E+02 0.0034 22.3 4.2 24 69-92 5-28 (183)
213 COG0623 FabI Enoyl-[acyl-carri 23.0 1.9E+02 0.0042 23.8 4.8 100 48-154 79-185 (259)
214 COG0078 ArgF Ornithine carbamo 23.0 96 0.0021 26.3 3.2 28 39-66 207-234 (310)
215 KOG0343|consensus 22.8 4.4E+02 0.0095 24.8 7.4 83 65-151 230-318 (758)
216 PLN02928 oxidoreductase family 22.6 97 0.0021 26.3 3.2 58 45-102 218-277 (347)
217 PLN02422 dephospho-CoA kinase 22.5 1.6E+02 0.0034 23.7 4.3 43 37-79 154-196 (232)
218 PLN02342 ornithine carbamoyltr 22.3 1.3E+02 0.0029 25.8 4.0 21 40-60 246-266 (348)
219 smart00846 Gp_dh_N Glyceraldeh 22.3 1.3E+02 0.0029 22.3 3.6 36 52-90 86-121 (149)
220 PRK00877 hisD bifunctional his 22.0 63 0.0014 28.6 2.0 96 39-137 303-400 (425)
221 cd05312 NAD_bind_1_malic_enz N 21.9 2.3E+02 0.005 23.6 5.2 57 45-101 95-157 (279)
222 PRK13304 L-aspartate dehydroge 21.9 2.1E+02 0.0045 23.1 5.0 44 41-87 49-92 (265)
223 TIGR00268 conserved hypothetic 21.8 2.8E+02 0.006 22.2 5.6 58 82-152 13-71 (252)
224 COG1712 Predicted dinucleotide 21.7 1.7E+02 0.0037 24.0 4.3 46 44-93 51-96 (255)
225 PF07386 DUF1499: Protein of u 21.5 2.2E+02 0.0047 20.1 4.4 33 127-159 32-64 (118)
226 KOG3843|consensus 21.4 1.6E+02 0.0034 25.0 4.1 39 55-93 127-169 (432)
227 PRK13302 putative L-aspartate 21.3 2.3E+02 0.005 23.0 5.1 24 42-65 56-79 (271)
228 PLN02979 glycolate oxidase 20.7 2.5E+02 0.0054 24.4 5.3 62 80-158 97-160 (366)
229 PF00701 DHDPS: Dihydrodipicol 20.6 3.4E+02 0.0073 21.9 6.0 79 65-156 53-136 (289)
230 PLN02306 hydroxypyruvate reduc 20.6 1.2E+02 0.0026 26.2 3.5 60 43-102 226-287 (386)
231 cd06572 Histidinol_dh Histidin 20.4 1E+02 0.0022 27.0 2.9 96 39-137 276-373 (390)
232 PLN02289 ribulose-bisphosphate 20.4 4.2E+02 0.0091 20.6 7.0 58 101-159 47-106 (176)
233 PF03807 F420_oxidored: NADP o 20.3 95 0.0021 20.3 2.3 41 46-89 54-94 (96)
234 PRK06932 glycerate dehydrogena 20.3 4.3E+02 0.0094 21.9 6.6 58 45-102 189-248 (314)
235 PF05913 DUF871: Bacterial pro 20.2 3.3E+02 0.0073 23.4 6.0 60 82-150 111-173 (357)
236 COG1129 MglA ABC-type sugar tr 20.2 2.5E+02 0.0054 25.5 5.4 62 64-136 433-494 (500)
237 cd02003 TPP_IolD Thiamine pyro 20.2 2.2E+02 0.0048 21.9 4.6 38 70-108 3-42 (205)
No 1
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=3.9e-49 Score=326.90 Aligned_cols=157 Identities=46% Similarity=0.730 Sum_probs=148.2
Q ss_pred hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942 2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK 70 (160)
Q Consensus 2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~ 70 (160)
||.+||+ ++++..|.+.++++++++.....+ .+..+++|++++++. ++++||||||||+||+++|++
T Consensus 22 ~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~-~~~~l~~i~~~~~~~-~l~~~DlVIEAv~E~levK~~ 99 (307)
T COG1250 22 FALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEE-ADAALARITPTTDLA-ALKDADLVIEAVVEDLELKKQ 99 (307)
T ss_pred HhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhh-HHHHHhhccccCchh-HhccCCEEEEeccccHHHHHH
Confidence 6777888 889999999999998886655443 789999999999995 899999999999999999999
Q ss_pred HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942 71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150 (160)
Q Consensus 71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv 150 (160)
+|++|+++++|+||||||||+|||++|++.++||+||+|+||||||+.|||||||+|.+|++++++++.+|++++||+|+
T Consensus 100 vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~v 179 (307)
T COG1250 100 VFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPV 179 (307)
T ss_pred HHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EecCcCcccC
Q psy3942 151 VCKDTPGFTP 160 (160)
Q Consensus 151 ~v~d~pGfi~ 160 (160)
+++|+||||.
T Consensus 180 v~~D~pGFi~ 189 (307)
T COG1250 180 VVKDVPGFIV 189 (307)
T ss_pred eecCCCceeh
Confidence 8899999984
No 2
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=1.4e-46 Score=291.31 Aligned_cols=152 Identities=43% Similarity=0.662 Sum_probs=130.1
Q ss_pred hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942 2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK 70 (160)
Q Consensus 2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~ 70 (160)
||++|++ ++++++|++.++.+++++.....+ .+..+++|++++|+++ +.+|||||||++|++++|++
T Consensus 18 ~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~-~~~~~~~i~~~~dl~~-~~~adlViEai~E~l~~K~~ 95 (180)
T PF02737_consen 18 FARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEE-ADAALARISFTTDLEE-AVDADLVIEAIPEDLELKQE 95 (180)
T ss_dssp HHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHH-HHHHHHTEEEESSGGG-GCTESEEEE-S-SSHHHHHH
T ss_pred HHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhh-hhhhhhhcccccCHHH-HhhhheehhhccccHHHHHH
Confidence 6888999 788999999999988876655443 8889999999999965 55999999999999999999
Q ss_pred HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942 71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150 (160)
Q Consensus 71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv 150 (160)
+|++|+++|+|+|||+||||++++++|++.+.+|+|++|+|||||++.+|+||||+|++|++++++++.+|++++||.||
T Consensus 96 ~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv 175 (180)
T PF02737_consen 96 LFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETVDRVRALLRSLGKTPV 175 (180)
T ss_dssp HHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCc
Q psy3942 151 VCKDT 155 (160)
Q Consensus 151 ~v~d~ 155 (160)
+|+|+
T Consensus 176 ~v~D~ 180 (180)
T PF02737_consen 176 VVKDT 180 (180)
T ss_dssp EEES-
T ss_pred EecCC
Confidence 99985
No 3
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=1.2e-44 Score=328.98 Aligned_cols=158 Identities=35% Similarity=0.516 Sum_probs=149.1
Q ss_pred ChhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHH
Q psy3942 1 VAAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69 (160)
Q Consensus 1 ~~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~ 69 (160)
+||.+|++ ++++++|++.++..++++..+..+ .+..+++|++++++ +++++||||||||+|++++|+
T Consensus 331 ~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~-~~~~~aDlViEav~E~l~~K~ 408 (714)
T TIGR02437 331 QSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAK-MAGVLNGITPTLSY-AGFDNVDIVVEAVVENPKVKA 408 (714)
T ss_pred HHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh-HHHHHhCeEEeCCH-HHhcCCCEEEEcCcccHHHHH
Confidence 37889999 788999999999998886655443 78889999999999 579999999999999999999
Q ss_pred HHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 70 ~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
++|++|+++|+|+|||+||||++|+++|++.++||+||+|+|||||++.|||||||+|+.|++++++++.+|++++||+|
T Consensus 409 ~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~p 488 (714)
T TIGR02437 409 AVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTP 488 (714)
T ss_pred HHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcCcccC
Q psy3942 150 IVCKDTPGFTP 160 (160)
Q Consensus 150 v~v~d~pGfi~ 160 (160)
|+|+|+||||.
T Consensus 489 v~v~d~pGfi~ 499 (714)
T TIGR02437 489 IVVNDCPGFFV 499 (714)
T ss_pred EEeCCcccchH
Confidence 99999999984
No 4
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=2.8e-44 Score=326.67 Aligned_cols=158 Identities=37% Similarity=0.545 Sum_probs=148.8
Q ss_pred ChhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHH
Q psy3942 1 VAAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69 (160)
Q Consensus 1 ~~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~ 69 (160)
+||++||+ ++++.+|++.+++.++++..+..+ .++.+++|++++|+ +++++||||||||+|++++|+
T Consensus 331 ~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~-~~~~~~~i~~~~~~-~~~~~aDlViEav~E~l~~K~ 408 (715)
T PRK11730 331 QSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAK-MAGVLSSIRPTLDY-AGFERVDVVVEAVVENPKVKA 408 (715)
T ss_pred HHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhh-HHHHHhCeEEeCCH-HHhcCCCEEEecccCcHHHHH
Confidence 37889998 788899999999998886655443 78899999999999 579999999999999999999
Q ss_pred HHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 70 ~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
++|++|+++|+|+|||+||||++|+++|++.+.+|+||+|+|||||++.|||||||+|+.|++++++++.+|++++||+|
T Consensus 409 ~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~p 488 (715)
T PRK11730 409 AVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTP 488 (715)
T ss_pred HHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHHHHhCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcCcccC
Q psy3942 150 IVCKDTPGFTP 160 (160)
Q Consensus 150 v~v~d~pGfi~ 160 (160)
|+|+|+||||+
T Consensus 489 v~v~d~pGfv~ 499 (715)
T PRK11730 489 IVVNDCPGFFV 499 (715)
T ss_pred EEecCcCchhH
Confidence 99999999984
No 5
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.7e-44 Score=299.07 Aligned_cols=154 Identities=23% Similarity=0.323 Sum_probs=141.4
Q ss_pred hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942 2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK 70 (160)
Q Consensus 2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~ 70 (160)
||.+||+ ++++.+|.+.++.+.+.+.. .....++|++++++++++++||+||||+||++++|++
T Consensus 26 ~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~i~~~~~l~~av~~aDlViEavpE~l~vK~~ 100 (321)
T PRK07066 26 ALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLA-----PGASPARLRFVATIEACVADADFIQESAPEREALKLE 100 (321)
T ss_pred HHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-----hhhHHhhceecCCHHHHhcCCCEEEECCcCCHHHHHH
Confidence 6888999 46677888888877765422 2345689999999988899999999999999999999
Q ss_pred HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942 71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150 (160)
Q Consensus 71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv 150 (160)
+|++|++.|++++||+||||++++++|++.+++|+||+|+|||||||.|||||||+|++|++++++++.+|++++||+||
T Consensus 101 lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV 180 (321)
T PRK07066 101 LHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPL 180 (321)
T ss_pred HHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee-cCcCcccC
Q psy3942 151 VC-KDTPGFTP 160 (160)
Q Consensus 151 ~v-~d~pGfi~ 160 (160)
++ +|+||||+
T Consensus 181 ~v~kd~pGFi~ 191 (321)
T PRK07066 181 HVRKEVPGFIA 191 (321)
T ss_pred ecCCCCccHHH
Confidence 99 79999984
No 6
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=6.1e-44 Score=325.11 Aligned_cols=157 Identities=34% Similarity=0.572 Sum_probs=148.6
Q ss_pred hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942 2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK 70 (160)
Q Consensus 2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~ 70 (160)
||.+|++ +++.++|++.+++.++++..+..+ .++.+++|++++|+ +++++||||||||+|++++|++
T Consensus 354 ~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~-~~~~~~~i~~~~~~-~~~~~aDlViEAv~E~l~~K~~ 431 (737)
T TIGR02441 354 SVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLE-RDSILSNLTPTLDY-SGFKNADMVIEAVFEDLSLKHK 431 (737)
T ss_pred HHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhCeEEeCCH-HHhccCCeehhhccccHHHHHH
Confidence 6788999 788999999999998886655443 78899999999999 5899999999999999999999
Q ss_pred HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942 71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150 (160)
Q Consensus 71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv 150 (160)
+|++|+++|+|+|||+||||+|++++|++.++||+||+|+|||||++.|||||||+|+.|++++++++.+|++++||+||
T Consensus 432 vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv 511 (737)
T TIGR02441 432 VIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVI 511 (737)
T ss_pred HHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcCcccC
Q psy3942 151 VCKDTPGFTP 160 (160)
Q Consensus 151 ~v~d~pGfi~ 160 (160)
+|+|+||||.
T Consensus 512 ~v~d~pGFi~ 521 (737)
T TIGR02441 512 VVKDGPGFYT 521 (737)
T ss_pred EECCcCCchH
Confidence 9999999984
No 7
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=2.2e-43 Score=320.06 Aligned_cols=157 Identities=33% Similarity=0.486 Sum_probs=146.8
Q ss_pred hh-hCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHH
Q psy3942 2 AA-QAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69 (160)
Q Consensus 2 ~a-~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~ 69 (160)
|| .+|++ ++++.++.+.+++.++++.....+ .+..+++|++++++ +++++||||||||+|++++|+
T Consensus 323 ~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~adlViEav~E~l~~K~ 400 (699)
T TIGR02440 323 TATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAE-RDNQMALITGTTDY-RGFKDVDIVIEAVFEDLALKH 400 (699)
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHcCeEEeCCh-HHhccCCEEEEeccccHHHHH
Confidence 56 48998 788889999999988876554433 77889999999999 589999999999999999999
Q ss_pred HHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 70 ~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
++|++|+++|+++|||+||||++|+++|++.+.+|+||+|+||||||+.|||||||+|+.|++++++++.+|++++||+|
T Consensus 401 ~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~p 480 (699)
T TIGR02440 401 QMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTP 480 (699)
T ss_pred HHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcCcccC
Q psy3942 150 IVCKDTPGFTP 160 (160)
Q Consensus 150 v~v~d~pGfi~ 160 (160)
|+|+|+||||+
T Consensus 481 v~v~d~pGfi~ 491 (699)
T TIGR02440 481 IVVADKAGFYV 491 (699)
T ss_pred EEEccccchHH
Confidence 99999999984
No 8
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=8.6e-43 Score=316.64 Aligned_cols=157 Identities=32% Similarity=0.479 Sum_probs=147.2
Q ss_pred hh-hCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHH
Q psy3942 2 AA-QAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69 (160)
Q Consensus 2 ~a-~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~ 69 (160)
|| .+|++ ++++.++++.++.+++++.....+ .++.+++|++++++ +++++||||||||+|++++|+
T Consensus 328 ~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~i~~~~~~-~~~~~aDlViEav~E~~~~K~ 405 (708)
T PRK11154 328 TATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSE-RDKQMALISGTTDY-RGFKHADVVIEAVFEDLALKQ 405 (708)
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhcEEEeCCh-HHhccCCEEeecccccHHHHH
Confidence 56 77998 778889999999998886654433 77889999999999 589999999999999999999
Q ss_pred HHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 70 ~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
++|++|+++|+|+|||+||||++|+++|++.+.+|+||+|+|||||++.|||||||+|++|++++++.+.+|++++||.|
T Consensus 406 ~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~p 485 (708)
T PRK11154 406 QMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTP 485 (708)
T ss_pred HHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcCcccC
Q psy3942 150 IVCKDTPGFTP 160 (160)
Q Consensus 150 v~v~d~pGfi~ 160 (160)
|+++|+||||.
T Consensus 486 v~v~d~pGfi~ 496 (708)
T PRK11154 486 IVVRDGAGFYV 496 (708)
T ss_pred EEEeccCcHHH
Confidence 99999999983
No 9
>KOG2304|consensus
Probab=100.00 E-value=3.2e-44 Score=284.54 Aligned_cols=159 Identities=59% Similarity=0.890 Sum_probs=149.1
Q ss_pred hhhCCcc-----------HHHHHHHHHHHHHHhcCCc----hhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChH
Q psy3942 2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSK----EEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMD 66 (160)
Q Consensus 2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~----~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~ 66 (160)
+|.+||+ .+|++.|.+++.+.+++.. ...++.++..++||..++++.++++++|+|||||.||++
T Consensus 30 ~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~~v~dadliiEAivEn~d 109 (298)
T KOG2304|consen 30 AATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSDAVSDADLIIEAIVENLD 109 (298)
T ss_pred HHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHHhhhhhHHHHHHHHHhHH
Confidence 5778888 8899999999999887622 223456788999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcC
Q psy3942 67 IKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIG 146 (160)
Q Consensus 67 ~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lg 146 (160)
+|+++|++|+..|+++|||+|||||+.+++|+..+++|.||.|+|||||++.|.|||||+++.||++|......|++.+|
T Consensus 110 iK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVir~~~TS~eTf~~l~~f~k~~g 189 (298)
T KOG2304|consen 110 IKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVIRTDDTSDETFNALVDFGKAVG 189 (298)
T ss_pred HHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhhcCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEecCcCcccC
Q psy3942 147 KTTIVCKDTPGFTP 160 (160)
Q Consensus 147 k~pv~v~d~pGfi~ 160 (160)
|+||-++|.||||.
T Consensus 190 KttVackDtpGFIV 203 (298)
T KOG2304|consen 190 KTTVACKDTPGFIV 203 (298)
T ss_pred CCceeecCCCchhh
Confidence 99999999999984
No 10
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3e-41 Score=278.05 Aligned_cols=157 Identities=36% Similarity=0.595 Sum_probs=147.0
Q ss_pred hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942 2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK 70 (160)
Q Consensus 2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~ 70 (160)
+|.+||+ ++++++|++.++++++++..+..+ .++.+++|++++++ +++++||+||||++|++++|++
T Consensus 24 ~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~l~~~~~~-~~~~~~d~ViEav~E~~~~K~~ 101 (286)
T PRK07819 24 CARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERE-RDAALARLRFTTDL-GDFADRQLVIEAVVEDEAVKTE 101 (286)
T ss_pred HHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhh-HHHHHhCeEeeCCH-HHhCCCCEEEEecccCHHHHHH
Confidence 6788998 778999999999998886655443 77889999999999 5799999999999999999999
Q ss_pred HHHHHhhhC-CCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHH-HcCCe
Q psy3942 71 LFTSVDKIA-PASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGK-SIGKT 148 (160)
Q Consensus 71 v~~~l~~~~-~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~-~lgk~ 148 (160)
+|++++++| +|++||+||||++++++++..+.+|+|++|+|||||+|.+|+|||+++.+|++++++++..|++ .+||+
T Consensus 102 l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~ 181 (286)
T PRK07819 102 IFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQ 181 (286)
T ss_pred HHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999998 59999
Q ss_pred EEEecCcCcccC
Q psy3942 149 TIVCKDTPGFTP 160 (160)
Q Consensus 149 pv~v~d~pGfi~ 160 (160)
|++++|.||||+
T Consensus 182 pv~v~d~pGfi~ 193 (286)
T PRK07819 182 VVRAQDRSGFVV 193 (286)
T ss_pred ceEecCCCChHH
Confidence 999999999983
No 11
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.2e-41 Score=280.06 Aligned_cols=149 Identities=28% Similarity=0.475 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCC--hhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeec
Q psy3942 11 GEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSK--VEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASN 88 (160)
Q Consensus 11 a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~--~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasn 88 (160)
++++|++.++.+++++..+..+ .++.+++|+++++ +.+++++||+|||||+|++++|+++|++|++.|+|+|||+||
T Consensus 36 ~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSn 114 (314)
T PRK08269 36 ARAEIERTLAALVALGRIDAAQ-ADAVLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIAST 114 (314)
T ss_pred HHHHHHHHHHHHHHcCCCChhh-HHHHHhCeEeecCcchHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 8888999999988887655443 7789999999875 446789999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCcccC
Q psy3942 89 TSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFTP 160 (160)
Q Consensus 89 TS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~ 160 (160)
||++++++|++.++||+|++|+||||||+.||||||++|+.|++++++++..|++.+||.|++++|.|||+.
T Consensus 115 tS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v~d~~Gfi~ 186 (314)
T PRK08269 115 TSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPGYIV 186 (314)
T ss_pred cccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999974
No 12
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=1.2e-38 Score=280.08 Aligned_cols=157 Identities=39% Similarity=0.601 Sum_probs=146.9
Q ss_pred hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942 2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK 70 (160)
Q Consensus 2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~ 70 (160)
++++||+ ++++.+|++.++.+++++.....+ .++.++||+++++++ ++++||+||||++|++++|+.
T Consensus 24 la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~-~~~~~~~i~~~~~~~-~l~~aDlVIEav~E~~~vK~~ 101 (503)
T TIGR02279 24 AASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEE-CERTLKRLIPVTDLH-ALADAGLVIEAIVENLEVKKA 101 (503)
T ss_pred HHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHHHhccEEeCCHH-HhCCCCEEEEcCcCcHHHHHH
Confidence 6788998 677889999999998886654433 788999999999994 789999999999999999999
Q ss_pred HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942 71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150 (160)
Q Consensus 71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv 150 (160)
+|++|+..|++++||+||||++++++|++.+.+|+|++|+|||||++.|+|||||+|+.|++++++++..|++.+||.||
T Consensus 102 vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv 181 (503)
T TIGR02279 102 LFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPV 181 (503)
T ss_pred HHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcCcccC
Q psy3942 151 VCKDTPGFTP 160 (160)
Q Consensus 151 ~v~d~pGfi~ 160 (160)
+++|+||||.
T Consensus 182 ~v~d~pGfi~ 191 (503)
T TIGR02279 182 HCHSTPGFIV 191 (503)
T ss_pred EeCCCCCcHH
Confidence 9999999973
No 13
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.1e-38 Score=276.43 Aligned_cols=157 Identities=41% Similarity=0.636 Sum_probs=147.5
Q ss_pred hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942 2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK 70 (160)
Q Consensus 2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~ 70 (160)
++++||+ +++.++|++.++++++++..+..+ .++.++||+++++++ ++++||+||||++|++++|+.
T Consensus 26 la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~-~~~~~~~i~~~~~~~-~~~~aDlViEav~E~~~vK~~ 103 (507)
T PRK08268 26 AAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQ-ADAALARLRPVEALA-DLADCDLVVEAIVERLDVKQA 103 (507)
T ss_pred HHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhCeEEeCCHH-HhCCCCEEEEcCcccHHHHHH
Confidence 6788998 788889999999998887655443 888999999999995 689999999999999999999
Q ss_pred HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942 71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150 (160)
Q Consensus 71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv 150 (160)
+|++|+.+|++++||+||||++++++|++.+.+|+|++|+|||||++.|+|||||+|.+|++++++++..|++.+||+|+
T Consensus 104 vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv 183 (507)
T PRK08268 104 LFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPV 183 (507)
T ss_pred HHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcCcccC
Q psy3942 151 VCKDTPGFTP 160 (160)
Q Consensus 151 ~v~d~pGfi~ 160 (160)
+++|+||||.
T Consensus 184 ~v~d~pGfi~ 193 (507)
T PRK08268 184 RAKDTPGFIV 193 (507)
T ss_pred EecCCCChHH
Confidence 9999999973
No 14
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.5e-35 Score=243.43 Aligned_cols=159 Identities=30% Similarity=0.469 Sum_probs=139.9
Q ss_pred hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942 2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK 70 (160)
Q Consensus 2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~ 70 (160)
++.+|++ +++.+++++.++..............+..+++|++++|+++++++||+||||+||++++|++
T Consensus 22 la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~ 101 (287)
T PRK08293 22 TAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGD 101 (287)
T ss_pred HHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhcCCCEEEEeccCCHHHHHH
Confidence 5677887 45666666666666655433322114567789999999977899999999999999999999
Q ss_pred HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942 71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150 (160)
Q Consensus 71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv 150 (160)
+|+++++.+++++||+||||+++++++++.+.+|+|++|+|||||++.+|+|||++++.|++++++++.+|++.+||+||
T Consensus 102 ~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv 181 (287)
T PRK08293 102 FYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPI 181 (287)
T ss_pred HHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee-cCcCcccC
Q psy3942 151 VC-KDTPGFTP 160 (160)
Q Consensus 151 ~v-~d~pGfi~ 160 (160)
++ +|.||||+
T Consensus 182 ~v~~d~pgfi~ 192 (287)
T PRK08293 182 VLKKEQPGYIL 192 (287)
T ss_pred EecCCCCCHhH
Confidence 99 79999984
No 15
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.9e-34 Score=236.17 Aligned_cols=157 Identities=48% Similarity=0.732 Sum_probs=143.2
Q ss_pred hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942 2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK 70 (160)
Q Consensus 2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~ 70 (160)
++.+|++ ++++++|++.++.+.+.+.....+ .+..+.+++++++++ ++++||+||||++|++++|++
T Consensus 22 la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~-~~~~~~~l~~~~~~~-~~~~aDlVi~av~e~~~~k~~ 99 (282)
T PRK05808 22 CAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEAD-KEAALARITGTTDLD-DLKDADLVIEAATENMDLKKK 99 (282)
T ss_pred HHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhCeEEeCCHH-HhccCCeeeecccccHHHHHH
Confidence 4566777 577888999999988876443332 667788999999995 689999999999999999999
Q ss_pred HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942 71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150 (160)
Q Consensus 71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv 150 (160)
+|++|++.++++++|+||||++++++|++.+++|+|++|+||++|++.+++|||++|..|++++++++..|++.+||.|+
T Consensus 100 ~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e~~~~~~~l~~~lGk~pv 179 (282)
T PRK05808 100 IFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPV 179 (282)
T ss_pred HHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcCcccC
Q psy3942 151 VCKDTPGFTP 160 (160)
Q Consensus 151 ~v~d~pGfi~ 160 (160)
+++|+||||.
T Consensus 180 ~~~d~~g~i~ 189 (282)
T PRK05808 180 EVKNAPGFVV 189 (282)
T ss_pred EecCccChHH
Confidence 9999999973
No 16
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.3e-34 Score=234.59 Aligned_cols=157 Identities=38% Similarity=0.659 Sum_probs=136.8
Q ss_pred hhhCCcc-----------HHHHHHHHH---HHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHH
Q psy3942 2 AAQAGNQ-----------EEGEKLIDS---TLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDI 67 (160)
Q Consensus 2 ~a~~G~~-----------~~a~~~i~~---~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~ 67 (160)
++.+|++ +++++++++ .++..++.+..... ..++.++++++++++ +++++||+||||++|++++
T Consensus 22 la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~-~~~~~aDlVieav~e~~~~ 99 (291)
T PRK06035 22 FARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSED-EAKAIMARIRTSTSY-ESLSDADFIVEAVPEKLDL 99 (291)
T ss_pred HHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHH-HHHHHHhCcEeeCCH-HHhCCCCEEEEcCcCcHHH
Confidence 5677887 333444554 24445544433222 266778999999999 5899999999999999999
Q ss_pred HHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy3942 68 KHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGK 147 (160)
Q Consensus 68 K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk 147 (160)
|+++|++|+..+++++||+||||++++++|++.+.+|+|++|+|||+|++.+++||+++|+.|++++++++..|++.+||
T Consensus 100 k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~T~~e~~~~~~~~~~~lgk 179 (291)
T PRK06035 100 KRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGK 179 (291)
T ss_pred HHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCcCcccC
Q psy3942 148 TTIVCKDTPGFTP 160 (160)
Q Consensus 148 ~pv~v~d~pGfi~ 160 (160)
.|++++|.|||++
T Consensus 180 ~~v~v~d~pgfv~ 192 (291)
T PRK06035 180 IPIEVADVPGFFT 192 (291)
T ss_pred eEEEeCCCCCeeH
Confidence 9999999999984
No 17
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=4.4e-33 Score=228.82 Aligned_cols=158 Identities=38% Similarity=0.558 Sum_probs=137.6
Q ss_pred hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942 2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK 70 (160)
Q Consensus 2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~ 70 (160)
++.+||+ +++.+++...++..++.+..... ..++.+.++++++++++++++||+||||+||++++|+.
T Consensus 20 la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~ 98 (288)
T PRK09260 20 FAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA-ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKA 98 (288)
T ss_pred HHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHH-HHHHHHhCeEEeCcHHHhhcCCCEEEEeccCCHHHHHH
Confidence 5667887 33444444444444444333322 25678899999999977899999999999999999999
Q ss_pred HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942 71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150 (160)
Q Consensus 71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv 150 (160)
+|.+|++.+++++||+||||+++++++++.+.+|+|++|+|||+|++.++|+|++.|++|++++++++..|++.+||.|+
T Consensus 99 ~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v 178 (288)
T PRK09260 99 VFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETV 178 (288)
T ss_pred HHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcCcccC
Q psy3942 151 VCKDTPGFTP 160 (160)
Q Consensus 151 ~v~d~pGfi~ 160 (160)
+++|+||||+
T Consensus 179 ~v~d~~Gf~~ 188 (288)
T PRK09260 179 VVNEFPGFVT 188 (288)
T ss_pred EecCcccHHH
Confidence 9999999984
No 18
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=9.4e-33 Score=227.09 Aligned_cols=157 Identities=41% Similarity=0.634 Sum_probs=140.0
Q ss_pred hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942 2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK 70 (160)
Q Consensus 2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~ 70 (160)
++.+|++ +++.+++.+.++...+.+.....+ .+..+.+++++++++ ++++||+||||+||+.++|+.
T Consensus 23 la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-~~~~~~~i~~~~~~~-~~~~aD~Vieavpe~~~~k~~ 100 (292)
T PRK07530 23 CALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEA-RAAALARISTATDLE-DLADCDLVIEAATEDETVKRK 100 (292)
T ss_pred HHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhCeEeeCCHH-HhcCCCEEEEcCcCCHHHHHH
Confidence 5667887 455666777777766654433222 566788999999994 789999999999999999999
Q ss_pred HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942 71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150 (160)
Q Consensus 71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv 150 (160)
+|++|++.++++++|+||||++++++|++.+.+|+|++|+|||+|++.++++||+.|..|++++++++..|++.+||.|+
T Consensus 101 ~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~~~~~~~~~~~~~~gk~~v 180 (292)
T PRK07530 101 IFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTIT 180 (292)
T ss_pred HHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcCcccC
Q psy3942 151 VCKDTPGFTP 160 (160)
Q Consensus 151 ~v~d~pGfi~ 160 (160)
+++|.||||.
T Consensus 181 ~~~d~pg~i~ 190 (292)
T PRK07530 181 VAEDFPAFIV 190 (292)
T ss_pred EecCcCChHH
Confidence 9999999973
No 19
>KOG2305|consensus
Probab=100.00 E-value=8.5e-34 Score=225.52 Aligned_cols=159 Identities=23% Similarity=0.360 Sum_probs=149.8
Q ss_pred ChhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHH
Q psy3942 1 VAAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKH 69 (160)
Q Consensus 1 ~~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~ 69 (160)
.||.+||+ ..|.+.+++.|+++.+.+...++-.+++.+++|+.++++++.+++|-.++||+||++++|+
T Consensus 21 lFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~Ai~iQEcvpE~L~lkk 100 (313)
T KOG2305|consen 21 LFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKGAIHIQECVPEDLNLKK 100 (313)
T ss_pred HHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhhhhhHHhhchHhhHHHH
Confidence 38999999 7799999999999888755555555889999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 70 ~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
++|++||+++.|.||++|+||++..+.+.+++.+.++++..|+.|||+.+||||+|++|+|+|+++++++++++++|..|
T Consensus 101 ~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwTsp~tVdrt~~lM~sigq~p 180 (313)
T KOG2305|consen 101 QLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWTSPDTVDRTRALMRSIGQEP 180 (313)
T ss_pred HHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCCChhHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEe-cCcCccc
Q psy3942 150 IVC-KDTPGFT 159 (160)
Q Consensus 150 v~v-~d~pGfi 159 (160)
|.. ++.-||.
T Consensus 181 V~l~rei~Gf~ 191 (313)
T KOG2305|consen 181 VTLKREILGFA 191 (313)
T ss_pred cccccccccce
Confidence 998 8999985
No 20
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=3e-32 Score=224.42 Aligned_cols=157 Identities=45% Similarity=0.713 Sum_probs=142.9
Q ss_pred hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942 2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK 70 (160)
Q Consensus 2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~ 70 (160)
|+.+|++ ++++++|++.++.+++.+.....+ .++.++++++++++ +++++||+||||++|+.++|+.
T Consensus 23 l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~-~~~~~aD~Vieav~e~~~~k~~ 100 (295)
T PLN02545 23 AAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEE-ADATLGRIRCTTNL-EELRDADFIIEAIVESEDLKKK 100 (295)
T ss_pred HHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHhceEeeCCH-HHhCCCCEEEEcCccCHHHHHH
Confidence 5667877 667788888888888775544332 56678899999999 4799999999999999999999
Q ss_pred HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942 71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150 (160)
Q Consensus 71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv 150 (160)
+|++++..+++++||+||||+++++++++.+.+|.|++|+||+|||+.++++||+.|..|++++++++..|++.+||.|+
T Consensus 101 v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~ 180 (295)
T PLN02545 101 LFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVV 180 (295)
T ss_pred HHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcCcccC
Q psy3942 151 VCKDTPGFTP 160 (160)
Q Consensus 151 ~v~d~pGfi~ 160 (160)
+++|.||||+
T Consensus 181 ~~~d~~g~i~ 190 (295)
T PLN02545 181 CSQDYPGFIV 190 (295)
T ss_pred EecCcccHHH
Confidence 9999999973
No 21
>KOG1683|consensus
Probab=99.97 E-value=4.6e-33 Score=232.87 Aligned_cols=157 Identities=32% Similarity=0.462 Sum_probs=144.8
Q ss_pred hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942 2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK 70 (160)
Q Consensus 2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~ 70 (160)
|..+|++ ++++..+...+.+.+.++..++.+ .+..+.++..+.|+ ..++++|+|||+++||+++|++
T Consensus 9 ~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~-~~~~~~~L~~~~Dy-~~~~~~dmvieav~edl~Lk~~ 86 (380)
T KOG1683|consen 9 FILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLE-REKTKSNLVETLDY-TGFANADMVIEAVFEDLELKHE 86 (380)
T ss_pred HHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccc-hhhhhhhccccccc-ccccccceeccchhhhHHHHHH
Confidence 5567777 567888888888877776555444 77888999999999 5799999999999999999999
Q ss_pred HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942 71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150 (160)
Q Consensus 71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv 150 (160)
+|++|+++|+|+||++||||+++++++++.+++|++++|+|||+|++.|+|+||+.+.+||..+++.+.......||.|+
T Consensus 87 l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~v 166 (380)
T KOG1683|consen 87 LFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAGKLPV 166 (380)
T ss_pred HHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcCcccC
Q psy3942 151 VCKDTPGFTP 160 (160)
Q Consensus 151 ~v~d~pGfi~ 160 (160)
+|.++|||.+
T Consensus 167 vVg~c~gf~v 176 (380)
T KOG1683|consen 167 VVGNCCGFRV 176 (380)
T ss_pred EeccCCceEE
Confidence 9999999963
No 22
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.97 E-value=4.7e-29 Score=206.91 Aligned_cols=158 Identities=27% Similarity=0.413 Sum_probs=141.9
Q ss_pred hhhCCcc-----------HHHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHH
Q psy3942 2 AAQAGNQ-----------EEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHK 70 (160)
Q Consensus 2 ~a~~G~~-----------~~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~ 70 (160)
++.+||+ +++..+++..++.+.+.+..+... .+..+.++++++++++++++||+|+||+||++++|+.
T Consensus 21 la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~-~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~~~k~~ 99 (308)
T PRK06129 21 FARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEA-PDAVLARIRVTDSLADAVADADYVQESAPENLELKRA 99 (308)
T ss_pred HHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhh-HHHHhcCeEEECcHHHhhCCCCEEEECCcCCHHHHHH
Confidence 5667877 566777788888777765433222 6678889999999977889999999999999999999
Q ss_pred HHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942 71 LFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150 (160)
Q Consensus 71 v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv 150 (160)
+|++++..++++++|+||||+++++++++.+.+|.|++|.|||||++.+|+||++++..|++++++++..|++.+||.|+
T Consensus 100 ~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v 179 (308)
T PRK06129 100 LFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPV 179 (308)
T ss_pred HHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ee-cCcCcccC
Q psy3942 151 VC-KDTPGFTP 160 (160)
Q Consensus 151 ~v-~d~pGfi~ 160 (160)
++ ++.||||+
T Consensus 180 ~v~~~~~G~i~ 190 (308)
T PRK06129 180 RLRREIDGFVL 190 (308)
T ss_pred EecCCCccHHH
Confidence 99 79999973
No 23
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.96 E-value=1e-28 Score=216.84 Aligned_cols=124 Identities=22% Similarity=0.379 Sum_probs=119.2
Q ss_pred HhcCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCC
Q psy3942 37 TLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPV 116 (160)
Q Consensus 37 ~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~ 116 (160)
.++++++++++++++++||+||||+||++++|+.+|++|++.+++++||+||||++++++|++.+.+|+|+++.|||||+
T Consensus 64 ~~g~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~ 143 (495)
T PRK07531 64 PEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPV 143 (495)
T ss_pred hhhceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCc
Confidence 34678999999778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcCcccC
Q psy3942 117 PMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC-KDTPGFTP 160 (160)
Q Consensus 117 ~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v-~d~pGfi~ 160 (160)
+.+||+|++.|+.|++++++++..|++.+||.|+++ ++.|||++
T Consensus 144 ~~~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~ 188 (495)
T PRK07531 144 YLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIAKEIDAFVG 188 (495)
T ss_pred ccCceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecCCCcchhH
Confidence 999999999999999999999999999999999999 79999984
No 24
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.94 E-value=1.4e-25 Score=185.62 Aligned_cols=125 Identities=38% Similarity=0.649 Sum_probs=118.5
Q ss_pred HHhcCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCC
Q psy3942 36 LTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNP 115 (160)
Q Consensus 36 ~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P 115 (160)
..++++++++++++++++||+||+|+|++.+.|+++|++++..++++++|+||||+++++++++.+.++.|++|+||++|
T Consensus 62 ~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p 141 (311)
T PRK06130 62 AGMGRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTP 141 (311)
T ss_pred HHhhceEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCC
Confidence 35678889999976789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcCcccC
Q psy3942 116 VPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC-KDTPGFTP 160 (160)
Q Consensus 116 ~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v-~d~pGfi~ 160 (160)
++.++++|+++++.|++++++.+..|++.+|+.|+++ +|.|||++
T Consensus 142 ~~~~~l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~ 187 (311)
T PRK06130 142 ADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGFIA 187 (311)
T ss_pred CccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCcHH
Confidence 9999999999999999999999999999999999999 69999963
No 25
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.74 E-value=4.3e-18 Score=150.25 Aligned_cols=84 Identities=20% Similarity=0.191 Sum_probs=80.3
Q ss_pred hhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcC
Q psy3942 77 KIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTP 156 (160)
Q Consensus 77 ~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~p 156 (160)
..+++++++++++++.+.++++....+|+|++|+|||||++.||+|||++|++|++++++++.+|++++||+||+++|+|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~ 415 (507)
T PRK08268 336 GPSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSP 415 (507)
T ss_pred ccccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCc
Confidence 56789999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q psy3942 157 GFTP 160 (160)
Q Consensus 157 Gfi~ 160 (160)
|||.
T Consensus 416 Gfi~ 419 (507)
T PRK08268 416 GFVA 419 (507)
T ss_pred cHHH
Confidence 9973
No 26
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.42 E-value=9.9e-15 Score=126.38 Aligned_cols=109 Identities=16% Similarity=0.247 Sum_probs=98.7
Q ss_pred cCceecCChhhhcCCCcEEEEecc----------CChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCC--CCc
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIV----------ENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNR--KDK 106 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~----------E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~--p~r 106 (160)
.+|+.++|+.+++++||+||++++ |++++|+.+|++++..|++++++.+|+|...+++|+..+.. | +
T Consensus 60 ~~I~~ttD~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~ 138 (423)
T cd05297 60 LKIEATTDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-D 138 (423)
T ss_pred eEEEEeCCHHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-C
Confidence 578889998789999999999999 57999999999999999999999999999999999999874 7 9
Q ss_pred EEEeecCCCCCCC-----ceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 107 FVGLHFFNPVPMM-----KLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 107 ~ig~Hf~~P~~~~-----~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
.+++||+||+..+ +..+ ++.-+|+..+......+++.+|+.|
T Consensus 139 a~~i~~tNPv~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~~ 185 (423)
T cd05297 139 AWLLNYANPMAELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEPP 185 (423)
T ss_pred CEEEEcCChHHHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCCH
Confidence 9999999999988 7887 6777777778888888999999854
No 27
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.16 E-value=1.5e-10 Score=98.97 Aligned_cols=102 Identities=17% Similarity=0.232 Sum_probs=87.7
Q ss_pred ChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCC--CCHHHHhcccCCCCcEEEeecCCCCCCCceEE
Q psy3942 46 KVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSS--LSITEIASVTNRKDKFVGLHFFNPVPMMKLLE 123 (160)
Q Consensus 46 ~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~--l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVE 123 (160)
+.++++++||+||.|+|++. ..++++++.. +++++||..++|. .++.++..... .+|+|.||++++....+.+
T Consensus 135 ~~~~~~~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~ 209 (374)
T PRK11199 135 RAEDILADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAK 209 (374)
T ss_pred hHHHHHhcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCC
Confidence 44556889999999999996 5889999999 8999999999884 66788877653 4799999999988777766
Q ss_pred --EecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 124 --VIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 124 --vv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
++..+.|+++.++++..|++.+|+.|+.+
T Consensus 210 ~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~ 240 (374)
T PRK11199 210 QVVVVCDGRQPEAYQWLLEQIQVWGARLHRI 240 (374)
T ss_pred CEEEEcCCCCchHHHHHHHHHHHCCCEEEEC
Confidence 77788999999999999999999999887
No 28
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.99 E-value=3e-09 Score=87.24 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=86.3
Q ss_pred cCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCC------
Q psy3942 44 SSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVP------ 117 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~------ 117 (160)
+++. ++++++|+||.|+|++... ++++++...++++++| +++++++...+.....++.+++|+|++..+.
T Consensus 49 ~~~~-~~~~~aDlVilavp~~~~~--~~~~~l~~~l~~~~ii-~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~ 124 (279)
T PRK07417 49 STDL-SLLKDCDLVILALPIGLLL--PPSEQLIPALPPEAIV-TDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEA 124 (279)
T ss_pred cCCH-hHhcCCCEEEEcCCHHHHH--HHHHHHHHhCCCCcEE-EeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHH
Confidence 4455 4689999999999987764 4789999988999888 7788888877776666667899999976543
Q ss_pred ------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942 118 ------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK 153 (160)
Q Consensus 118 ------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~ 153 (160)
..+.+=+++++.++++.++.+..|++.+|+.|+.+.
T Consensus 125 a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~ 166 (279)
T PRK07417 125 GQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYTAD 166 (279)
T ss_pred hhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 234555889999999999999999999999998773
No 29
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.65 E-value=3.1e-07 Score=77.87 Aligned_cols=112 Identities=20% Similarity=0.211 Sum_probs=86.7
Q ss_pred CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHH----hcccCCCCcEEEeecCCC
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEI----ASVTNRKDKFVGLHFFNP 115 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~l----a~~~~~p~r~ig~Hf~~P 115 (160)
.++++++..+++++||+||.|+|... ..++++..+...++++++|. ++|+++...+ ...+..+.+.+|+||++|
T Consensus 68 Gi~~asd~~eaa~~ADvVIlaVP~~~-~v~~Vl~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p 145 (342)
T PRK12557 68 GVKVVSDDAEAAKHGEIHILFTPFGK-KTVEIAKNILPHLPENAVIC-NTCTVSPVVLYYSLEGELRTKRKDVGISSMHP 145 (342)
T ss_pred CCEEeCCHHHHHhCCCEEEEECCCcH-HHHHHHHHHHhhCCCCCEEE-EecCCCHHHHHHHHHHHhcccccccCeeecCC
Confidence 46677777677899999999999654 56788889999899998877 5666666644 355555667889999887
Q ss_pred CCC----CceEEEecCCCC------CHHHHHHHHHHHHHcCCeEEEec
Q psy3942 116 VPM----MKLLEVIRTNDT------SDATYNAVTEWGKSIGKTTIVCK 153 (160)
Q Consensus 116 ~~~----~~lVEvv~~~~T------~~~~~~~~~~~~~~lgk~pv~v~ 153 (160)
... ..-++|+.|..| +++.++++..+++.+|+.++++.
T Consensus 146 ~~v~Gae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~ 193 (342)
T PRK12557 146 AAVPGTPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP 193 (342)
T ss_pred ccccccccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC
Confidence 653 223568877655 89999999999999999997764
No 30
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.63 E-value=3.3e-07 Score=77.88 Aligned_cols=107 Identities=13% Similarity=0.182 Sum_probs=81.2
Q ss_pred cCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhh-CCCCcEEeecCCC--CCHHHHhcccCCCCcEEEeecCCCCC---
Q psy3942 44 SSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKI-APASAILASNTSS--LSITEIASVTNRKDKFVGLHFFNPVP--- 117 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~-~~~~~iiasnTS~--l~i~~la~~~~~p~r~ig~Hf~~P~~--- 117 (160)
++++++++++||+||.|+|.+ ...+++.++... .+++++|...+|. -.+..+.....+..+++|.|++.-..
T Consensus 51 ~~~~~~~~~~aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG 128 (359)
T PRK06545 51 AADLQRAAAEADLIVLAVPVD--ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSG 128 (359)
T ss_pred ccCHHHHhcCCCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhh
Confidence 456666789999999999996 578999999873 7888887643333 33445555556678999999754321
Q ss_pred ---------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 118 ---------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 118 ---------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
.....=|+++..|+++.++.+.+|++.+|+.|+.+
T Consensus 129 ~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~ 172 (359)
T PRK06545 129 VAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVL 172 (359)
T ss_pred HHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 22223478889999999999999999999999887
No 31
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.61 E-value=6.9e-08 Score=79.98 Aligned_cols=92 Identities=14% Similarity=0.252 Sum_probs=74.0
Q ss_pred cCceecCChhhhcCCCcEEEEec--------------cCChHHHHHHHHHHhhhCCCCc-EEeecCCCCCHHHHhcccCC
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAI--------------VENMDIKHKLFTSVDKIAPASA-ILASNTSSLSITEIASVTNR 103 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~-iiasnTS~l~i~~la~~~~~ 103 (160)
.+|+.++|+ +++++||+||+++ +||+++|++++++|++.++++. |+.||.+.+....+...++.
T Consensus 53 ~~I~~t~d~-~~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~ 131 (300)
T cd01339 53 TKVTGTNDY-EDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGF 131 (300)
T ss_pred eEEEEcCCH-HHhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCC
Confidence 578888888 4799999999866 8999999999999999998888 68899999999999888876
Q ss_pred -CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 104 -KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 104 -p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
|+||+|+ .|..++...-..+++.+|..|
T Consensus 132 ~~~rviGl------------------gt~lds~r~~~~la~~l~v~~ 160 (300)
T cd01339 132 PRNRVIGM------------------AGVLDSARFRYFIAEELGVSV 160 (300)
T ss_pred CHHHEEEe------------------cchHHHHHHHHHHHHHhCCCc
Confidence 5799997 344455444445556676644
No 32
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.53 E-value=1.4e-06 Score=70.56 Aligned_cols=110 Identities=14% Similarity=0.211 Sum_probs=89.4
Q ss_pred CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCC
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMM 119 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~ 119 (160)
.+..+++..+.++++|+||-|++ .+..++++..+...++++.+|.|.++++++.++....+.. +++.+++..|....
T Consensus 48 g~~~~~~~~e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~ 124 (266)
T PLN02688 48 GVKTAASNTEVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVG 124 (266)
T ss_pred CCEEeCChHHHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHh
Confidence 35666777667889999999994 5667888889988888899888999999999999877654 78888777776655
Q ss_pred ceEE-EecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942 120 KLLE-VIRTNDTSDATYNAVTEWGKSIGKTTIVCK 153 (160)
Q Consensus 120 ~lVE-vv~~~~T~~~~~~~~~~~~~~lgk~pv~v~ 153 (160)
.-+- ++.+..++++..+.+..++..+|+ ++.+.
T Consensus 125 ~~~~~l~~~~~~~~~~~~~v~~l~~~~G~-~~~~~ 158 (266)
T PLN02688 125 EAASVMSLGPAATADDRDLVATLFGAVGK-IWVVD 158 (266)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeC
Confidence 5555 456788899999999999999999 77663
No 33
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.52 E-value=8.9e-08 Score=80.46 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=64.2
Q ss_pred cCceecCChhhhcCCCcEEEEec-------------------cCChHHHHHHHHHHhhhCCC-CcEEeecCCCCCHHHHh
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAI-------------------VENMDIKHKLFTSVDKIAPA-SAILASNTSSLSITEIA 98 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav-------------------~E~l~~K~~v~~~l~~~~~~-~~iiasnTS~l~i~~la 98 (160)
.+|+.++|+ ++++|||+||+++ .+|.+++++++.++++.+++ -.|++||++++....+.
T Consensus 61 ~~I~~~~d~-~~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~ 139 (321)
T PTZ00082 61 SKVIGTNNY-EDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQ 139 (321)
T ss_pred eEEEECCCH-HHhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHH
Confidence 478878899 5899999999955 78999999999999999977 37889999999999999
Q ss_pred cccCCC-CcEEEee
Q psy3942 99 SVTNRK-DKFVGLH 111 (160)
Q Consensus 99 ~~~~~p-~r~ig~H 111 (160)
..+++| +|++|++
T Consensus 140 ~~sg~p~~rviGlg 153 (321)
T PTZ00082 140 EHSGLPKNKVCGMA 153 (321)
T ss_pred HhcCCChhhEEEec
Confidence 888886 8999997
No 34
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=98.51 E-value=3.6e-07 Score=75.10 Aligned_cols=112 Identities=16% Similarity=0.211 Sum_probs=82.0
Q ss_pred CceecCChhhhcCCCcEEEEeccCChHHHHHHHH--HHhhhCCCCcEEeecCCCCCHH---HHhcccCCCCcEEEeecCC
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFT--SVDKIAPASAILASNTSSLSIT---EIASVTNRKDKFVGLHFFN 114 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~--~l~~~~~~~~iiasnTS~l~i~---~la~~~~~p~r~ig~Hf~~ 114 (160)
.+..++++++.+.++|+||.|+|+...+|.-++. .+...++++++|. |+|+.++. ++++.+..+ |+||++
T Consensus 45 g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii-d~st~~~~~~~~l~~~~~~~----g~~~~d 119 (296)
T PRK11559 45 GAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI-DMSSIAPLASREIAAALKAK----GIEMLD 119 (296)
T ss_pred CCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-ECCCCCHHHHHHHHHHHHHc----CCcEEE
Confidence 3456677777789999999999999988877654 3666678889887 55555554 666665432 678877
Q ss_pred CCCC-------CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec-CcCcc
Q psy3942 115 PVPM-------MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK-DTPGF 158 (160)
Q Consensus 115 P~~~-------~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~-d~pGf 158 (160)
+|-. ...++++.|. ++++++++..+++.+|+.++.+. ..+|+
T Consensus 120 ~pv~g~~~~a~~g~l~i~~gg--~~~~~~~~~~~l~~~~~~~~~~g~~g~a~ 169 (296)
T PRK11559 120 APVSGGEPKAIDGTLSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIGAGN 169 (296)
T ss_pred cCCCCCHHHHhhCcEEEEECC--CHHHHHHHHHHHHHhcCCeEEeCCcCHHH
Confidence 6522 1446677764 68999999999999999999885 34444
No 35
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=98.50 E-value=3.8e-07 Score=74.91 Aligned_cols=107 Identities=16% Similarity=0.298 Sum_probs=77.5
Q ss_pred cCChhhhcCCCcEEEEeccCChHHHHHHHHH--HhhhCCCCcEEeecCCCCCHH---HHhcccCCCCcEEEeecCCCCC-
Q psy3942 44 SSKVEDSVSQSDLVIEAIVENMDIKHKLFTS--VDKIAPASAILASNTSSLSIT---EIASVTNRKDKFVGLHFFNPVP- 117 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~E~l~~K~~v~~~--l~~~~~~~~iiasnTS~l~i~---~la~~~~~p~r~ig~Hf~~P~~- 117 (160)
.++..++++++|+||.|+|++..+|.-++.. +...++++++|. |+|+.++. ++++.+..+ |+||+.+|-
T Consensus 46 ~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiv-d~st~~~~~~~~l~~~l~~~----g~~~~~~pv~ 120 (291)
T TIGR01505 46 AETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLV-DMSSISPIESKRFAKAVKEK----GIDYLDAPVS 120 (291)
T ss_pred cCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEE-ECCCCCHHHHHHHHHHHHHc----CCCEEecCCC
Confidence 4556568899999999999999988777643 556678888887 44455553 677666433 677777432
Q ss_pred ------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC-cCc
Q psy3942 118 ------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD-TPG 157 (160)
Q Consensus 118 ------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d-~pG 157 (160)
....++++.| .++++++++..+++.+|+.++.+.+ .+|
T Consensus 121 g~~~~a~~g~l~i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a 165 (291)
T TIGR01505 121 GGEIGAIEGTLSIMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDG 165 (291)
T ss_pred CCHHHHhcCCEEEEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHH
Confidence 2233567766 4689999999999999999999853 444
No 36
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.40 E-value=5.1e-06 Score=67.21 Aligned_cols=109 Identities=9% Similarity=0.151 Sum_probs=85.1
Q ss_pred CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCC
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMM 119 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~ 119 (160)
.+..+++..+.+.++|+||-|++-. .=+++++++.... +++|.|.++++++..+...+++..+++.+|+..|....
T Consensus 49 g~~~~~~~~~~~~~advVil~v~~~--~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~ 124 (267)
T PRK11880 49 GVRAATDNQEAAQEADVVVLAVKPQ--VMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVG 124 (267)
T ss_pred CCeecCChHHHHhcCCEEEEEcCHH--HHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHc
Confidence 3556667756688999999999633 2345666666655 57888999999999999888777799999998887666
Q ss_pred ceEE-EecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942 120 KLLE-VIRTNDTSDATYNAVTEWGKSIGKTTIVCK 153 (160)
Q Consensus 120 ~lVE-vv~~~~T~~~~~~~~~~~~~~lgk~pv~v~ 153 (160)
.-+. +..+..++++..+.+..+++.+|+.+ .+.
T Consensus 125 ~~~~~i~~~~~~~~~~~~~v~~l~~~lG~~~-~~~ 158 (267)
T PRK11880 125 AGMTALTANALVSAEDRELVENLLSAFGKVV-WVD 158 (267)
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhCCeEE-EEC
Confidence 5554 56788899999999999999999844 443
No 37
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.38 E-value=4.8e-07 Score=75.92 Aligned_cols=72 Identities=21% Similarity=0.308 Sum_probs=63.8
Q ss_pred cCceecCChhhhcCCCcEEEEec--cCCh------------HHHHHHHHHHhhhCCCC-cEEeecCCCCCHHHHhcccCC
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAI--VENM------------DIKHKLFTSVDKIAPAS-AILASNTSSLSITEIASVTNR 103 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav--~E~l------------~~K~~v~~~l~~~~~~~-~iiasnTS~l~i~~la~~~~~ 103 (160)
.+|+.+++++ +++|||+||+++ +++. ++++++.+++++.||+. .|+.||.+.+....+....+.
T Consensus 60 ~~i~~~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~ 138 (319)
T PTZ00117 60 INILGTNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGI 138 (319)
T ss_pred eEEEeCCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCC
Confidence 3677778995 899999999999 8877 99999999999999888 688899999998888888887
Q ss_pred C-CcEEEee
Q psy3942 104 K-DKFVGLH 111 (160)
Q Consensus 104 p-~r~ig~H 111 (160)
| .|++|++
T Consensus 139 p~~rviG~g 147 (319)
T PTZ00117 139 PSNKICGMA 147 (319)
T ss_pred CcccEEEec
Confidence 7 8999987
No 38
>PRK08655 prephenate dehydrogenase; Provisional
Probab=98.37 E-value=3.9e-06 Score=73.26 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=89.4
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCC--CCCHHHHhcccCCCCcEEEeecCC----
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTS--SLSITEIASVTNRKDKFVGLHFFN---- 114 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS--~l~i~~la~~~~~p~r~ig~Hf~~---- 114 (160)
+.++++..+++.++|+||-|+|-+. -.+++.++...++++++|.+.+| ..++..+........+++|.|++.
T Consensus 46 v~~~~~~~e~~~~aDvVIlavp~~~--~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~ 123 (437)
T PRK08655 46 VEYANDNIDAAKDADIVIISVPINV--TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRT 123 (437)
T ss_pred CeeccCHHHHhccCCEEEEecCHHH--HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCC
Confidence 4566777677899999999999753 36889999999999999998887 566667776665556899999764
Q ss_pred CCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 115 P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
|......+-++++..++++.++++.++++.+|..++.+
T Consensus 124 ~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~ 161 (437)
T PRK08655 124 PSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVT 161 (437)
T ss_pred cccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 33455677788888899999999999999999999876
No 39
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.34 E-value=6.5e-06 Score=68.24 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=80.0
Q ss_pred ecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC---HHHHhcccCCCCcEEEeecCCCCCC-
Q psy3942 43 GSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS---ITEIASVTNRKDKFVGLHFFNPVPM- 118 (160)
Q Consensus 43 ~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~---i~~la~~~~~p~r~ig~Hf~~P~~~- 118 (160)
..+++++++.++|+||.|+|.. ...+++.++...++++++|... ++.. +..+.......-|+++.|++...+.
T Consensus 56 ~~~~~~~~~~~aDvViiavp~~--~~~~v~~~l~~~l~~~~iv~dv-gs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~ 132 (307)
T PRK07502 56 VTTSAAEAVKGADLVILCVPVG--ASGAVAAEIAPHLKPGAIVTDV-GSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHS 132 (307)
T ss_pred ecCCHHHHhcCCCEEEECCCHH--HHHHHHHHHHhhCCCCCEEEeC-ccchHHHHHHHHHhCCCCCeEEeCCCCCCCccc
Confidence 3456656789999999999974 3578888888888888877543 4434 3344444444458999999986442
Q ss_pred -----------CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 119 -----------MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 119 -----------~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
...+.+++...++++.++.+..+++.+|..++.+
T Consensus 133 G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~ 177 (307)
T PRK07502 133 GPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEM 177 (307)
T ss_pred chhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence 1235677888899999999999999999999886
No 40
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.31 E-value=5.6e-07 Score=79.89 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=58.8
Q ss_pred CcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCcccC
Q psy3942 82 SAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFTP 160 (160)
Q Consensus 82 ~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~ 160 (160)
+.....-+..-+.++++..+..++ .+...........+.|||++++.|++++++++.+|++++||.||+++|.||||.
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~ 418 (503)
T TIGR02279 341 GDALLALTDGRTAQARAIELARPN-LVLFDLVLDYSTGKRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLI 418 (503)
T ss_pred chhhhhhccccchhhhhhhcCCCC-chHHHHHhhhcccCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHH
Confidence 333444455556677776665443 334444444455689999999999999999999999999999999999999984
No 41
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.04 E-value=1.2e-05 Score=66.70 Aligned_cols=92 Identities=16% Similarity=0.231 Sum_probs=68.6
Q ss_pred cCceecCChhhhcCCCcEEEEec--------------cCChHHHHHHHHHHhhhCCCC-cEEeecCCCCCHHHHhcccCC
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAI--------------VENMDIKHKLFTSVDKIAPAS-AILASNTSSLSITEIASVTNR 103 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~-~iiasnTS~l~i~~la~~~~~ 103 (160)
.+|+.++|+ +++++||+||.++ .+|++++++++++|.+.+++. .|++||.+.+-..-+...++.
T Consensus 57 ~~i~~~~d~-~~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~ 135 (307)
T PRK06223 57 TKITGTNDY-EDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGF 135 (307)
T ss_pred cEEEeCCCH-HHHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCC
Confidence 577878899 5799999999886 589999999999999999776 577788888766666555554
Q ss_pred -CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 104 -KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 104 -p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
|.|++|+ .|..++...-..+++.+|..|
T Consensus 136 ~~~~viG~------------------gt~lds~r~~~~la~~l~v~~ 164 (307)
T PRK06223 136 PKNRVIGM------------------AGVLDSARFRTFIAEELNVSV 164 (307)
T ss_pred CcccEEEe------------------CCCcHHHHHHHHHHHHhCcCh
Confidence 4788887 344444444455666677644
No 42
>PLN02256 arogenate dehydrogenase
Probab=98.02 E-value=7.3e-05 Score=62.48 Aligned_cols=109 Identities=9% Similarity=0.001 Sum_probs=81.1
Q ss_pred ceecCChhhhc-CCCcEEEEeccCChHHHHHHHHHH-hhhCCCCcEEeecCC--CCCHHHHhcccCCCCcEEEeecCCCC
Q psy3942 41 IKGSSKVEDSV-SQSDLVIEAIVENMDIKHKLFTSV-DKIAPASAILASNTS--SLSITEIASVTNRKDKFVGLHFFNPV 116 (160)
Q Consensus 41 i~~~~~~~~al-~~adlViEav~E~l~~K~~v~~~l-~~~~~~~~iiasnTS--~l~i~~la~~~~~p~r~ig~Hf~~P~ 116 (160)
+...++.++.+ .++|+|+-|+|-. .=.+++.++ ...++++++|.+-+| +.++..+...+....+++|.|++.++
T Consensus 79 v~~~~~~~e~~~~~aDvVilavp~~--~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~ 156 (304)
T PLN02256 79 VSFFRDPDDFCEEHPDVVLLCTSIL--STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGP 156 (304)
T ss_pred CeeeCCHHHHhhCCCCEEEEecCHH--HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCC
Confidence 44556665444 4799999999853 446777887 456789999988888 56777777776555589999999987
Q ss_pred CCC-------ceEE----EecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 117 PMM-------KLLE----VIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 117 ~~~-------~lVE----vv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
... +++. +++ +.++++.++.+.+|++.+|..++..
T Consensus 157 e~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~l~~~lGa~v~~~ 202 (304)
T PLN02256 157 ESGKGGWAGLPFVYDKVRIGD-EGEREARCERFLDIFEEEGCRMVEM 202 (304)
T ss_pred CCCccccCCCeEEEecceecC-CCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 643 1111 112 6789999999999999999999986
No 43
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.85 E-value=9.3e-05 Score=68.11 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=82.9
Q ss_pred ecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCC--CCCHHHHhcccC-CCCcEEEeecCCCCC--
Q psy3942 43 GSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTS--SLSITEIASVTN-RKDKFVGLHFFNPVP-- 117 (160)
Q Consensus 43 ~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS--~l~i~~la~~~~-~p~r~ig~Hf~~P~~-- 117 (160)
..+++.+++.++|+|+.|+|.. .-.++++++....+++++|...+| +-.+..+...+. .+-|+++-|++.=+.
T Consensus 53 ~~~~~~~~~~~aDvVilavp~~--~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~ 130 (735)
T PRK14806 53 GEEDLAEAVSGADVIVLAVPVL--AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKS 130 (735)
T ss_pred ccCCHHHHhcCCCEEEECCCHH--HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcc
Confidence 3456666789999999999964 578999999998888887654333 223666766553 367999999975111
Q ss_pred ----------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 118 ----------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 118 ----------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
..+.+.++++..++++..+.+.++++.+|+.++.+
T Consensus 131 g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~ 175 (735)
T PRK14806 131 GVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHM 175 (735)
T ss_pred hhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence 23467889999999999999999999999988887
No 44
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.74 E-value=0.00037 Score=56.87 Aligned_cols=104 Identities=12% Similarity=0.171 Sum_probs=75.3
Q ss_pred cCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccC--CCCcEEEeecCC------C
Q psy3942 44 SSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTN--RKDKFVGLHFFN------P 115 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~--~p~r~ig~Hf~~------P 115 (160)
..+.++ +.++|+||-|+|.+. -.+++.++.. ++++++|...+|+ ...+...+. .+.++++.|++. |
T Consensus 50 ~~~~~~-~~~aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~gs~--k~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp 123 (275)
T PRK08507 50 IVSFEE-LKKCDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDLGST--KAKIIESVPKHIRKNFIAAHPMAGTENSGP 123 (275)
T ss_pred cCCHHH-HhcCCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEECccc--hHHHHHHHHHhcCCCEEecCCcCcCchhhH
Confidence 445644 556999999999765 4557788877 7888887764443 233333221 246899999974 4
Q ss_pred CC------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942 116 VP------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK 153 (160)
Q Consensus 116 ~~------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~ 153 (160)
.. ....+-++++..++++.++.+..+++.+|..++.+.
T Consensus 124 ~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~ 167 (275)
T PRK08507 124 KAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMD 167 (275)
T ss_pred HhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 22 345677888889999999999999999999998874
No 45
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.72 E-value=0.00041 Score=56.43 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=74.5
Q ss_pred hhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCC--CCHHHHhcccCCCCcEEEeecCCCC----------
Q psy3942 49 DSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSS--LSITEIASVTNRKDKFVGLHFFNPV---------- 116 (160)
Q Consensus 49 ~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~--l~i~~la~~~~~p~r~ig~Hf~~P~---------- 116 (160)
++++++|+||=|+|- +.=.++++++....+++++|.--+|. -++..+........+|+|.|++.-+
T Consensus 41 ~~~~~~DlvvlavP~--~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~ 118 (258)
T PF02153_consen 41 EAVEDADLVVLAVPV--SAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADA 118 (258)
T ss_dssp HHGGCCSEEEE-S-H--HHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TT
T ss_pred hHhcCCCEEEEcCCH--HHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcc
Confidence 579999999999974 45778999999999999998855543 3333444444445799999998865
Q ss_pred C--CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 117 P--MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 117 ~--~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
. ....+=|+++..|+++.++.+.+|++.+|..|+.+
T Consensus 119 ~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~ 156 (258)
T PF02153_consen 119 DLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEM 156 (258)
T ss_dssp TTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE-
T ss_pred cccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEc
Confidence 1 34567788999999999999999999999999886
No 46
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.66 E-value=4.3e-05 Score=62.11 Aligned_cols=72 Identities=18% Similarity=0.260 Sum_probs=52.6
Q ss_pred cCceecCChhhhcCCCcEEEE--------------eccCChHHHHHHHHHHhhhCCCCcEEe--ecCCCCCHHHHhcccC
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIE--------------AIVENMDIKHKLFTSVDKIAPASAILA--SNTSSLSITEIASVTN 102 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViE--------------av~E~l~~K~~v~~~l~~~~~~~~iia--snTS~l~i~~la~~~~ 102 (160)
.+|+.++|++++++|||+||+ .+.+|.++++++++++++.| |++++. ||-..+-..-+...++
T Consensus 56 ~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~~~~sg 134 (263)
T cd00650 56 IKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPVDIITYLVWRYSG 134 (263)
T ss_pred cEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHHHhC
Confidence 578888886578999999999 78899999999999999999 666443 4433332223333333
Q ss_pred C-CCcEEEee
Q psy3942 103 R-KDKFVGLH 111 (160)
Q Consensus 103 ~-p~r~ig~H 111 (160)
. |.|++|+.
T Consensus 135 ~~~~kviG~~ 144 (263)
T cd00650 135 LPKEKVIGLG 144 (263)
T ss_pred CCchhEEEee
Confidence 3 57888886
No 47
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.61 E-value=0.00084 Score=54.96 Aligned_cols=110 Identities=8% Similarity=0.145 Sum_probs=84.6
Q ss_pred CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCC-
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPM- 118 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~- 118 (160)
.++.+.+..+.++++|+||=|++-.. + .+++..+...+.++.+|.|-.+++++..+.....+..++++.|+-.|...
T Consensus 52 g~~~~~~~~e~~~~aDvVilav~p~~-~-~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~ 129 (279)
T PRK07679 52 GVKGTHNKKELLTDANILFLAMKPKD-V-AEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAIL 129 (279)
T ss_pred CceEeCCHHHHHhcCCEEEEEeCHHH-H-HHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHh
Confidence 35666777667789999999998443 2 34567887777889999998899999999987765567999987544333
Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 119 MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 119 ~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
..+.=++.+...+++..+.+..++..+|+ ++.+
T Consensus 130 ~~~t~~~~~~~~~~~~~~~v~~l~~~~G~-~~~v 162 (279)
T PRK07679 130 KSATAISPSKHATAEHIQTAKALFETIGL-VSVV 162 (279)
T ss_pred cccEEEeeCCCCCHHHHHHHHHHHHhCCc-EEEe
Confidence 34555557888889999999999999998 5554
No 48
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.45 E-value=0.0023 Score=53.05 Aligned_cols=102 Identities=15% Similarity=0.187 Sum_probs=78.1
Q ss_pred hhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCC--CHHHHhcccCCCCcEEEeecCCCCC------CCc
Q psy3942 49 DSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSL--SITEIASVTNRKDKFVGLHFFNPVP------MMK 120 (160)
Q Consensus 49 ~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l--~i~~la~~~~~p~r~ig~Hf~~P~~------~~~ 120 (160)
.+++++|+||=||| +..=-++++++....+++++|.=-||.= ++..+......-.+|+|.|++.-++ ...
T Consensus 60 ~~~~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~ 137 (279)
T COG0287 60 EAAAEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENA 137 (279)
T ss_pred hhcccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCC
Confidence 56789999999998 4556679999999999999998665543 3334433332211899999988652 334
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 121 LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 121 lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
.+=+.++..++.+.++.+.++++.+|..++.+
T Consensus 138 ~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~ 169 (279)
T COG0287 138 VVVLTPSEGTEKEWVEEVKRLWEALGARLVEM 169 (279)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence 56677888899999999999999999998886
No 49
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.20 E-value=0.003 Score=50.27 Aligned_cols=106 Identities=8% Similarity=0.160 Sum_probs=81.4
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCC--
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPM-- 118 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~-- 118 (160)
+..++++++.+.++|+|+=|+|-.. -+++++++....+ +.+|.|.+.++++..|...+....+++-+|+-.|...
T Consensus 54 ~~~~~~~~~~~~~~DiViiavp~~~--~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~ 130 (245)
T PRK07634 54 VSTTTDWKQHVTSVDTIVLAMPPSA--HEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGK 130 (245)
T ss_pred cEEeCChHHHHhcCCEEEEecCHHH--HHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhc
Confidence 5566788677899999999999653 4788888887665 5699999999999999998876557777776444332
Q ss_pred -CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEE
Q psy3942 119 -MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIV 151 (160)
Q Consensus 119 -~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~ 151 (160)
.+.+ ..+...+++..+.+..++..+|..+.+
T Consensus 131 g~~~~--~~~~~~~~~~~~~v~~lf~~~G~~~~~ 162 (245)
T PRK07634 131 SISLY--TMGQSVNETHKETLQLILKGIGTSQLC 162 (245)
T ss_pred CCeEE--eeCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 2233 244567889999999999999998864
No 50
>PRK08818 prephenate dehydrogenase; Provisional
Probab=97.12 E-value=0.005 Score=52.98 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=70.0
Q ss_pred CChhhhcCCCcEEEEeccCChHHHHHHHHHHhhh---CCCCcEEeecCCCC--CHHHHhcccCCCCcEEEeecCCCCCCC
Q psy3942 45 SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKI---APASAILASNTSSL--SITEIASVTNRKDKFVGLHFFNPVPMM 119 (160)
Q Consensus 45 ~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~---~~~~~iiasnTS~l--~i~~la~~~~~p~r~ig~Hf~~P~~~~ 119 (160)
++.++.+++||+||=|+|... =.++++++... .+++|+|.=-+|.= ++..+ .....+|+|.|++.-++..
T Consensus 43 ~~~~~~v~~aDlVilavPv~~--~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~~~fVG~HPMaG~E~s 117 (370)
T PRK08818 43 LDPATLLQRADVLIFSAPIRH--TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---LASQAEVVGLHPMTAPPKS 117 (370)
T ss_pred CCHHHHhcCCCEEEEeCCHHH--HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---HhcCCCEEeeCCCCCCCCC
Confidence 345567899999999998655 45678888775 68999887544432 23333 2223479999999865533
Q ss_pred ce----EEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 120 KL----LEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 120 ~l----VEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
.+ .=|+. +...++.++++.+|++.+|..|+.+
T Consensus 118 ~lf~g~~~ilt-p~~~~~~~~~v~~l~~~~Ga~v~~~ 153 (370)
T PRK08818 118 PTLKGRVMVVC-EARLQHWSPWVQSLCSALQAECVYA 153 (370)
T ss_pred cccCCCeEEEe-CCCchhHHHHHHHHHHHcCCEEEEc
Confidence 22 11222 3355666889999999999999886
No 51
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=97.11 E-value=0.0054 Score=51.98 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=72.9
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccC----CCCcEEEeecCCCC
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTN----RKDKFVGLHFFNPV 116 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~----~p~r~ig~Hf~~P~ 116 (160)
...+++..++++++|+||=|+|..-.++ +++..+-..+++++++ -++|++++..+...+. ...+=+|+--|+|.
T Consensus 69 A~~AaS~aEAAa~ADVVIL~LPd~aaV~-eVl~GLaa~L~~GaIV-ID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~ 146 (341)
T TIGR01724 69 VKVVSDDKEAAKHGEIHVLFTPFGKGTF-SIARTIIEHVPENAVI-CNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPA 146 (341)
T ss_pred CeecCCHHHHHhCCCEEEEecCCHHHHH-HHHHHHHhcCCCCCEE-EECCCCCHHHHHHHHHHHhhcCccccCeeccCCC
Confidence 4556667678899999999999665554 4556677777888766 5667777776655332 12333555444443
Q ss_pred C--CCce--EEEe------cCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 117 P--MMKL--LEVI------RTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 117 ~--~~~l--VEvv------~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
- -++- .=|+ .....++|.+++..+++++.||.|.++
T Consensus 147 ~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~ 192 (341)
T TIGR01724 147 AVPGTPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVV 192 (341)
T ss_pred CCCCCCCCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 2 2221 1222 223456788899999999999999987
No 52
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=97.05 E-value=0.0046 Score=53.38 Aligned_cols=102 Identities=13% Similarity=0.161 Sum_probs=58.7
Q ss_pred hcCceecCChhhhcCCCcEEEEeccCChHHH---------HHHHHHHhhhCCCCcEEe-ecCCCCCH-HHHhcccCCCCc
Q psy3942 38 LSRIKGSSKVEDSVSQSDLVIEAIVENMDIK---------HKLFTSVDKIAPASAILA-SNTSSLSI-TEIASVTNRKDK 106 (160)
Q Consensus 38 l~~i~~~~~~~~al~~adlViEav~E~l~~K---------~~v~~~l~~~~~~~~iia-snTS~l~i-~~la~~~~~p~r 106 (160)
..+++.+++.++++++||+||+|+|++++.| .++++.+... +++.++. .+|..... .++...+. +
T Consensus 58 ~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~-~~g~lVV~~STv~pgtt~~l~~~~~--~- 133 (388)
T PRK15057 58 KIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVEI-NPYAVMVIKSTVPVGFTAAMHKKYR--T- 133 (388)
T ss_pred CCcEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHhc-CCCCEEEEeeecCCchHHHHHHHhh--c-
Confidence 3567777777667899999999999998777 3455666663 5555443 43333323 35554332 1
Q ss_pred EEEeecCCCCCCCceE---------EEecCCCCCHHHHHHHHHHHHH--cCC
Q psy3942 107 FVGLHFFNPVPMMKLL---------EVIRTNDTSDATYNAVTEWGKS--IGK 147 (160)
Q Consensus 107 ~ig~Hf~~P~~~~~lV---------Evv~~~~T~~~~~~~~~~~~~~--lgk 147 (160)
.|+.| +|....+=- =||-|. + ++..+++..++.. ++.
T Consensus 134 -~~v~~-~PE~l~~G~a~~d~~~p~rvv~G~-~-~~~~~~~~~~l~~~~~~~ 181 (388)
T PRK15057 134 -ENIIF-SPEFLREGKALYDNLHPSRIVIGE-R-SERAERFAALLQEGAIKQ 181 (388)
T ss_pred -CcEEE-CcccccCCcccccccCCCEEEEEc-C-cHHHHHHHHHHHhhhhcC
Confidence 13433 666544321 234443 2 3456777777744 554
No 53
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.75 E-value=0.016 Score=47.69 Aligned_cols=111 Identities=12% Similarity=0.159 Sum_probs=74.0
Q ss_pred CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH-------HHhcccCCCCcEEEeec
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT-------EIASVTNRKDKFVGLHF 112 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~-------~la~~~~~p~r~ig~Hf 112 (160)
.++.+++.++.+.++|+||-|++. ....+++..+...+++++++.+.+.+++.. .+.......... .-+
T Consensus 58 ~~~~~~~~~~~~~~~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~--~~~ 133 (325)
T PRK00094 58 NLRATTDLAEALADADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPI--AVL 133 (325)
T ss_pred CeEEeCCHHHHHhCCCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCce--EEE
Confidence 466677886678899999999998 467888999999989999887666555542 222222210111 122
Q ss_pred CCCCC-------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942 113 FNPVP-------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG 157 (160)
Q Consensus 113 ~~P~~-------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG 157 (160)
..|.. ...++.+. ..+.+.++++..+++..|..+....|..|
T Consensus 134 ~~P~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~d~~g 182 (325)
T PRK00094 134 SGPSFAKEVARGLPTAVVIA---STDEELAERVQELFHSPYFRVYTNTDVIG 182 (325)
T ss_pred ECccHHHHHHcCCCcEEEEE---eCCHHHHHHHHHHhCCCCEEEEecCCcch
Confidence 33442 12334443 33688899999999999998877777655
No 54
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.72 E-value=0.016 Score=48.38 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=73.7
Q ss_pred cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH-HHhcccCCCCcEEEeecC----
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT-EIASVTNRKDKFVGLHFF---- 113 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~-~la~~~~~p~r~ig~Hf~---- 113 (160)
.++..+++. +++.++|+||.|++-. .+.+++..|...++++++|.+.+.++... .+...+.....+.|.+++
T Consensus 60 ~~~~~~~~~-~~~~~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~ 136 (341)
T PRK08229 60 SAIAFSTDP-AALATADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVIS 136 (341)
T ss_pred ceeEeccCh-hhccCCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEe
Confidence 456677787 4789999999999754 45789999999999999998888888754 566665433334454442
Q ss_pred -CCCCCC--ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcC
Q psy3942 114 -NPVPMM--KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTP 156 (160)
Q Consensus 114 -~P~~~~--~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~p 156 (160)
.|-... ..-++.-+. . +..+++..+++..|.......|.-
T Consensus 137 ~~pg~~~~~~~g~l~~~~--~-~~~~~~~~~l~~~g~~~~~~~di~ 179 (341)
T PRK08229 137 RGPGAFHQGTSGALAIEA--S-PALRPFAAAFARAGLPLVTHEDMR 179 (341)
T ss_pred cCCceEEecCCCceEecC--C-chHHHHHHHHHhcCCCceecchhH
Confidence 221100 011122221 2 446788899999998887777643
No 55
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.71 E-value=0.026 Score=45.56 Aligned_cols=102 Identities=14% Similarity=0.078 Sum_probs=72.5
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCc
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMK 120 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~ 120 (160)
.+.+++..+.++++|+|+-|++ + ..-.+++.++. ..++.++.|-..++++..|...+....+++-+++..|.....
T Consensus 49 ~~~~~~~~~~~~~aDvVilav~-p-~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~ 124 (258)
T PRK06476 49 VRIAKDNQAVVDRSDVVFLAVR-P-QIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERK 124 (258)
T ss_pred ceEeCCHHHHHHhCCEEEEEeC-H-HHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCC
Confidence 5566777666789999999999 3 44467777773 467788888889999999999887656777777665544332
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 121 LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 121 lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
-+-.+.+. .+.+..++..+|..+.+.
T Consensus 125 g~t~~~~~------~~~~~~l~~~lG~~~~~~ 150 (258)
T PRK06476 125 GVTAIYPP------DPFVAALFDALGTAVECD 150 (258)
T ss_pred CCeEecCC------HHHHHHHHHhcCCcEEEC
Confidence 22223221 257889999999987753
No 56
>PLN02712 arogenate dehydrogenase
Probab=96.68 E-value=0.023 Score=52.38 Aligned_cols=110 Identities=11% Similarity=0.009 Sum_probs=77.7
Q ss_pred ceecCChhhhcC-CCcEEEEeccCChHHHHHHHHHHhh-hCCCCcEEeecCCC--CCHHHHhcccCCCCcEEEeecCCCC
Q psy3942 41 IKGSSKVEDSVS-QSDLVIEAIVENMDIKHKLFTSVDK-IAPASAILASNTSS--LSITEIASVTNRKDKFVGLHFFNPV 116 (160)
Q Consensus 41 i~~~~~~~~al~-~adlViEav~E~l~~K~~v~~~l~~-~~~~~~iiasnTS~--l~i~~la~~~~~p~r~ig~Hf~~P~ 116 (160)
+...+++++.+. ++|+||=|+|- ..=.+++.++.. .+++++++..-+|+ .++..+.......-+++|.|++.++
T Consensus 412 v~~~~~~~el~~~~aDvVILavP~--~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~ 489 (667)
T PLN02712 412 VSYFSDADDLCEEHPEVILLCTSI--LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGP 489 (667)
T ss_pred CeEeCCHHHHHhcCCCEEEECCCh--HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCc
Confidence 445667755454 58999999993 444666777754 56789999877776 6677777666555579999999987
Q ss_pred CCCc-----eEE-----EecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 117 PMMK-----LLE-----VIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 117 ~~~~-----lVE-----vv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
.... +-. ++.++.+..+.++.+.++++.+|..++.+
T Consensus 490 e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~m 535 (667)
T PLN02712 490 ESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEM 535 (667)
T ss_pred cccccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEe
Confidence 7531 111 12345556677777889999999999886
No 57
>PRK07680 late competence protein ComER; Validated
Probab=96.62 E-value=0.028 Score=45.78 Aligned_cols=109 Identities=15% Similarity=0.086 Sum_probs=74.9
Q ss_pred CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCC-
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPM- 118 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~- 118 (160)
.++.+.+..+.+.++|+||=|++- ..=.++++++.....++.+|.|-++++++..|...+. .+++-+++--|...
T Consensus 49 g~~~~~~~~~~~~~aDiVilav~p--~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~ 124 (273)
T PRK07680 49 GIHVAKTIEEVISQSDLIFICVKP--LDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRAL 124 (273)
T ss_pred CeEEECCHHHHHHhCCEEEEecCH--HHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHh
Confidence 356667776668999999999962 2235677888877888889999999999999988775 33443333212110
Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942 119 MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK 153 (160)
Q Consensus 119 ~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~ 153 (160)
.-..=+..+...+++..+.+..++..+|. ++.+.
T Consensus 125 ~G~t~~~~g~~~~~~~~~~~~~ll~~~G~-~~~i~ 158 (273)
T PRK07680 125 SGASLFTFGSRCSEEDQQKLERLFSNIST-PLVIE 158 (273)
T ss_pred hccEEEeeCCCCCHHHHHHHHHHHHcCCC-EEEEC
Confidence 11111234666788888999999999995 55553
No 58
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.56 E-value=0.037 Score=45.37 Aligned_cols=108 Identities=7% Similarity=0.022 Sum_probs=78.6
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCc
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMK 120 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~ 120 (160)
+..+++..+.+.++|+||-|++ ...=++++.++....+++++|.|-..++++.+|.+.+.. .+++-+=+--|.....
T Consensus 52 ~~~~~~~~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~ 128 (277)
T PRK06928 52 VELADNEAEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGV 128 (277)
T ss_pred eEEeCCHHHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhh
Confidence 4456677667899999999998 333447888888878889999999999999999998753 3565543333333222
Q ss_pred eEEE-ecCCCCCHHHHHHHHHHHHHcCCeEEE
Q psy3942 121 LLEV-IRTNDTSDATYNAVTEWGKSIGKTTIV 151 (160)
Q Consensus 121 lVEv-v~~~~T~~~~~~~~~~~~~~lgk~pv~ 151 (160)
-+=. ..+...+++-.+.+..++..+|+...+
T Consensus 129 g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 129 GTSLVAHAETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred hcEEEecCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 2222 356778888899999999999997644
No 59
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=96.54 E-value=0.051 Score=43.79 Aligned_cols=109 Identities=15% Similarity=0.247 Sum_probs=79.4
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCC-
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMM- 119 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~- 119 (160)
++.+.+..+.+.++|+||=|++ +..+ .+++.++.....++.+|.|-..++++.+|...++...+++-+=+-.|....
T Consensus 31 ~~~~~~~~e~~~~aDiIiLaVk-P~~i-~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~ 108 (245)
T TIGR00112 31 IVASSDAQEAVKEADVVFLAVK-PQDL-EEVLSELKSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGA 108 (245)
T ss_pred cEEeCChHHHHhhCCEEEEEeC-HHHH-HHHHHHHhhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhC
Confidence 5556666556789999999998 4444 477888887777889999999999999999888644455543322222222
Q ss_pred ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEE
Q psy3942 120 KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIV 151 (160)
Q Consensus 120 ~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~ 151 (160)
-..=+..+..++++-.+.+..++..+|+...+
T Consensus 109 g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v 140 (245)
T TIGR00112 109 GVTAIAANANVSEEDRALVLALFKAVGEVVEL 140 (245)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 23345567888899999999999999985543
No 60
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.50 E-value=0.1 Score=43.68 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=76.5
Q ss_pred cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH---HHhcccCCCC-cEEEeecCC
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT---EIASVTNRKD-KFVGLHFFN 114 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~---~la~~~~~p~-r~ig~Hf~~ 114 (160)
..+.+++|=.+|++++|++|==.|.--. --++.+++-...++++||+ ||-++|.. .+.+.++|.+ .+..+|+-.
T Consensus 125 aGvkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaa 202 (340)
T TIGR01723 125 LGLKVTTDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGC 202 (340)
T ss_pred cCceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCC
Confidence 4565555544799999999987776431 2468888888899999886 45556666 4445555543 455556554
Q ss_pred CCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 115 PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 115 P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
=|.+-.=+=|+.| ..+++.+++..+++++.||.|.++
T Consensus 203 VPgt~~q~Yi~eg-yAtEEqI~klveL~~sa~k~ay~~ 239 (340)
T TIGR01723 203 VPEMKGQVYIAEG-YASEEAVNKLYELGKKARGKAFKM 239 (340)
T ss_pred CCCCCCceEeecc-cCCHHHHHHHHHHHHHhCCCeeec
Confidence 3333334555554 666777899999999999999987
No 61
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.42 E-value=0.057 Score=44.33 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=83.2
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCc
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMK 120 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~ 120 (160)
++.+++..+.+.+||+||=|++ + ..=.+++.++.....+++++.|--.++++.+|...+..+.+++-+=+--|.....
T Consensus 51 ~~~~~~~~e~~~~aDiIiLavk-P-~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~ 128 (272)
T PRK12491 51 ITITTNNNEVANSADILILSIK-P-DLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGE 128 (272)
T ss_pred cEEeCCcHHHHhhCCEEEEEeC-h-HHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcC
Confidence 4556676566789999999999 3 5556788888888889999999999999999999887555666544333433333
Q ss_pred eEEE-ecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942 121 LLEV-IRTNDTSDATYNAVTEWGKSIGKTTIVCK 153 (160)
Q Consensus 121 lVEv-v~~~~T~~~~~~~~~~~~~~lgk~pv~v~ 153 (160)
-+=. ..+...+++-.+.+..++..+|+. +.+.
T Consensus 129 g~t~~~~~~~~~~~~~~~v~~lf~~~G~~-~~~~ 161 (272)
T PRK12491 129 GMSALCFNEMVTEKDIKEVLNIFNIFGQT-EVVN 161 (272)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHcCCCE-EEEc
Confidence 2322 467788888899999999999996 4553
No 62
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.19 E-value=0.028 Score=46.44 Aligned_cols=110 Identities=11% Similarity=0.094 Sum_probs=68.0
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHH--HHhhhCCCCcEEeecCCCCCHH---HHhcccCC-CCcEEEeecCC
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFT--SVDKIAPASAILASNTSSLSIT---EIASVTNR-KDKFVGLHFFN 114 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~--~l~~~~~~~~iiasnTS~l~i~---~la~~~~~-p~r~ig~Hf~~ 114 (160)
+..+++..++++++|+||-|+|.+..++.-++. .+-..+++++++ .|+|++++. +++..+.. .-+++-.--..
T Consensus 45 ~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lv-id~sT~~p~~~~~l~~~l~~~g~~~ldapV~g 123 (296)
T PRK15461 45 ATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALV-IDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR 123 (296)
T ss_pred CcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEE-EECCCCCHHHHHHHHHHHHHcCCcEEEccCCC
Confidence 445666667789999999999999888855542 244456677766 445555553 55555432 22333221111
Q ss_pred -CCC--CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942 115 -PVP--MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD 154 (160)
Q Consensus 115 -P~~--~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d 154 (160)
|+. ...++ ++.| -+++++++++.+++.+|+..+.+.+
T Consensus 124 ~~~~a~~g~l~-~~~g--g~~~~~~~~~p~l~~~g~~~~~~g~ 163 (296)
T PRK15461 124 TSDNAITGTLL-LLAG--GTAEQVERATPILMAMGNELINAGG 163 (296)
T ss_pred CHHHHHhCcEE-EEEC--CCHHHHHHHHHHHHHHcCCeEeeCC
Confidence 111 11122 2332 3889999999999999998888754
No 63
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.91 E-value=0.015 Score=45.70 Aligned_cols=37 Identities=24% Similarity=0.291 Sum_probs=33.9
Q ss_pred hcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEee
Q psy3942 50 SVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILAS 87 (160)
Q Consensus 50 al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iias 87 (160)
.++++|+|||| .|+.+.|+.++.++....+..+++++
T Consensus 107 ~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 107 FFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred HhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 57899999999 79999999999999999988888874
No 64
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.88 E-value=0.029 Score=48.43 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=71.6
Q ss_pred cCceecCChhhhcCCCcEEEEeccCChH--------HHHHHHHHHhhhCCCCcEEeecCCCCCHH---HHhccc-CC-CC
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVENMD--------IKHKLFTSVDKIAPASAILASNTSSLSIT---EIASVT-NR-KD 105 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~l~--------~K~~v~~~l~~~~~~~~iiasnTS~l~i~---~la~~~-~~-p~ 105 (160)
+++++++++.++++++|+||-|+|-... .=.++...+.+.+++++++. ++|++++. ++.... .+ ..
T Consensus 62 g~l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi-~~STv~pgt~~~l~~~~~~~~~g 140 (411)
T TIGR03026 62 GRLRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVV-LESTVPPGTTEEVVKPILERASG 140 (411)
T ss_pred CCeEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEE-EeCcCCCCchHHHHHHHHHhhcC
Confidence 5688889987779999999999997643 34566677877778887665 34444333 443221 11 00
Q ss_pred -c-EEEee-cCCCCCCCceE---------EEecCCCCCHHHHHHHHHHHHHcC-CeEEEecC
Q psy3942 106 -K-FVGLH-FFNPVPMMKLL---------EVIRTNDTSDATYNAVTEWGKSIG-KTTIVCKD 154 (160)
Q Consensus 106 -r-~ig~H-f~~P~~~~~lV---------Evv~~~~T~~~~~~~~~~~~~~lg-k~pv~v~d 154 (160)
+ ...++ .++|....+-- =|+.| .+++..+++..++..++ +.++.+.+
T Consensus 141 ~~~~~d~~v~~~Pe~~~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (411)
T TIGR03026 141 LKLGEDFYLAYNPEFLREGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTS 200 (411)
T ss_pred CCCCCCceEEECCCcCCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCC
Confidence 0 11011 23454433321 36666 58999999999999998 56777654
No 65
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=95.64 E-value=0.11 Score=44.11 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=77.5
Q ss_pred CceecCChhhhcCCCcEEEEeccCChHHHHHHH-HHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCC
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLF-TSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPM 118 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~-~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~ 118 (160)
.++.. +.++++++||+|+=++|.... .+++ .++...++++++| +-.+++++..+.......-+++-+.+=.|.+.
T Consensus 61 G~~~~-s~~eaa~~ADVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~ 136 (330)
T PRK05479 61 GFEVL-TVAEAAKWADVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHL 136 (330)
T ss_pred CCeeC-CHHHHHhcCCEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchh
Confidence 34444 676789999999999996654 6887 7898889999999 99999999988765543445776665556551
Q ss_pred C----------ceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942 119 M----------KLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150 (160)
Q Consensus 119 ~----------~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv 150 (160)
. |.+-- .+...+.+..+.+.+++..+|-++.
T Consensus 137 vr~~~~~G~Gv~~l~a-v~~d~t~~a~~~a~~l~~aiG~~~~ 177 (330)
T PRK05479 137 VRREYEEGGGVPCLIA-VHQDASGNAKDLALAYAKGIGGTRA 177 (330)
T ss_pred hhhhhhcCCCceEEEE-ecCCCCHHHHHHHHHHHHHcCCCcc
Confidence 1 11221 3344457789999999999999986
No 66
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.47 E-value=0.12 Score=42.96 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=66.6
Q ss_pred CChhhhcCCCcEEEEeccCChHHHHHHHHHHhhh-CCCCcEEeecCCCCCHH------HHhcccCCCCcEEEeecCCCCC
Q psy3942 45 SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKI-APASAILASNTSSLSIT------EIASVTNRKDKFVGLHFFNPVP 117 (160)
Q Consensus 45 ~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~-~~~~~iiasnTS~l~i~------~la~~~~~p~r~ig~Hf~~P~~ 117 (160)
++++++++++|+|+-|+|. +.-++++.++... .++++++.+.|.+++.. ++....-...+++. +..|..
T Consensus 39 ~~~~~~~~~advvi~~vp~--~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~--i~gp~~ 114 (308)
T PRK14619 39 LSLAAVLADADVIVSAVSM--KGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVV--LSGPNL 114 (308)
T ss_pred CCHHHHHhcCCEEEEECCh--HHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEE--EECCCc
Confidence 4666678999999999997 4677888999764 67889888877655443 22211100112221 223321
Q ss_pred CCc-----eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942 118 MMK-----LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG 157 (160)
Q Consensus 118 ~~~-----lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG 157 (160)
... ...++ -...+.+..+++..++...|..+....|.-|
T Consensus 115 a~ei~~~~~~~~~-~ag~~~~~~~~v~~ll~~~~~~~~~~~d~~G 158 (308)
T PRK14619 115 SKEIQQGLPAATV-VASRDLAAAETVQQIFSSERFRVYTNSDPLG 158 (308)
T ss_pred HHHHhcCCCeEEE-EEeCCHHHHHHHHHHhCCCcEEEEecCCchh
Confidence 100 01111 1234678899999999999998887666544
No 67
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=95.40 E-value=0.093 Score=43.05 Aligned_cols=105 Identities=14% Similarity=0.277 Sum_probs=68.7
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHH---HHHhhhCCCCcEEeecCCCCCHH---HHhcccCCCCcEEEeecCC
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLF---TSVDKIAPASAILASNTSSLSIT---EIASVTNRKDKFVGLHFFN 114 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~---~~l~~~~~~~~iiasnTS~l~i~---~la~~~~~p~r~ig~Hf~~ 114 (160)
+..+++..++++++|+||=|+|-+-.++ +++ ..+-...+++.++.. +|++++. +++..+.. -|++|..
T Consensus 40 ~~~~~s~~~~~~~advVil~vp~~~~~~-~v~~g~~~l~~~~~~g~~vid-~st~~p~~~~~~~~~~~~----~g~~~vd 113 (288)
T TIGR01692 40 AQAAASPAEAAEGADRVITMLPAGQHVI-SVYSGDEGILPKVAKGSLLID-CSTIDPDSARKLAELAAA----HGAVFMD 113 (288)
T ss_pred CeecCCHHHHHhcCCEEEEeCCChHHHH-HHHcCcchHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH----cCCcEEE
Confidence 4556677778899999999999876665 444 556556677776653 3355554 44444321 2455554
Q ss_pred -CCC-------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942 115 -PVP-------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD 154 (160)
Q Consensus 115 -P~~-------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d 154 (160)
|+. ...+.=++.| +++.++++..++..+|+..+.+.+
T Consensus 114 aPv~Gg~~~a~~g~l~~~~gg---~~~~~~~~~~~l~~~g~~~~~~g~ 158 (288)
T TIGR01692 114 APVSGGVGGARAGTLTFMVGG---VAEEFAAAEPVLGPMGRNIVHCGD 158 (288)
T ss_pred CCCCCCHHHHhhCcEEEEECC---CHHHHHHHHHHHHHhcCCeEeeCC
Confidence 222 1234444433 578899999999999999888864
No 68
>PLN02712 arogenate dehydrogenase
Probab=95.29 E-value=0.25 Score=45.72 Aligned_cols=110 Identities=8% Similarity=-0.035 Sum_probs=69.5
Q ss_pred ceecCChhhhc-CCCcEEEEeccCChHHHHHHHHHHh-hhCCCCcEEeecCCCC--CHHHHhcccCCCCcEEEeecCCCC
Q psy3942 41 IKGSSKVEDSV-SQSDLVIEAIVENMDIKHKLFTSVD-KIAPASAILASNTSSL--SITEIASVTNRKDKFVGLHFFNPV 116 (160)
Q Consensus 41 i~~~~~~~~al-~~adlViEav~E~l~~K~~v~~~l~-~~~~~~~iiasnTS~l--~i~~la~~~~~p~r~ig~Hf~~P~ 116 (160)
+...+++++.+ .++|+|+=|+|- ..=.+++.++. ..++++++|..-+|.= ++..+...+...-+++|.|++.=+
T Consensus 95 v~~~~d~~e~~~~~aDvViLavP~--~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~ 172 (667)
T PLN02712 95 VSFFLDPHDLCERHPDVILLCTSI--ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGP 172 (667)
T ss_pred CEEeCCHHHHhhcCCCEEEEcCCH--HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCC
Confidence 45566775434 579999999994 44567777775 5578888776554322 122344444333369999998755
Q ss_pred CC-----CceEEEec-----CCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 117 PM-----MKLLEVIR-----TNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 117 ~~-----~~lVEvv~-----~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
.. ..+..+.. ......+.++++.++++.+|..++..
T Consensus 173 e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~m 218 (667)
T PLN02712 173 QSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEM 218 (667)
T ss_pred ccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEe
Confidence 41 11222222 22334456788889999999999886
No 69
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=95.03 E-value=0.48 Score=38.37 Aligned_cols=106 Identities=14% Similarity=0.152 Sum_probs=75.4
Q ss_pred ecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCC-ce
Q psy3942 43 GSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMM-KL 121 (160)
Q Consensus 43 ~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~-~l 121 (160)
...+..+.+.++|+||=|++ ...=.+++.++....++ .+|.|-..+++++.+...+....+++.+-+-.|.... ..
T Consensus 47 ~~~~~~~~~~~~D~Vilavk--p~~~~~vl~~i~~~l~~-~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~ 123 (260)
T PTZ00431 47 YLQSNEELAKTCDIIVLAVK--PDLAGKVLLEIKPYLGS-KLLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGS 123 (260)
T ss_pred EeCChHHHHHhCCEEEEEeC--HHHHHHHHHHHHhhccC-CEEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhccee
Confidence 34454456789999999976 34455788888776665 4679999999999999877654445444333343332 33
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCeEEE
Q psy3942 122 LEVIRTNDTSDATYNAVTEWGKSIGKTTIV 151 (160)
Q Consensus 122 VEvv~~~~T~~~~~~~~~~~~~~lgk~pv~ 151 (160)
.=+..+..++++..+.+..++..+|+...+
T Consensus 124 t~i~~~~~~~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 124 LVFCANNNVDSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCcEEEE
Confidence 455677788999999999999999996654
No 70
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.01 E-value=0.097 Score=43.66 Aligned_cols=108 Identities=13% Similarity=0.146 Sum_probs=67.2
Q ss_pred CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC-----HHHHhcccCC--CCcEEEeec
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS-----ITEIASVTNR--KDKFVGLHF 112 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~-----i~~la~~~~~--p~r~ig~Hf 112 (160)
++..+++++++++++|+|+.|++..- + ++++ +.+++++++.+.+.++. ...++..+.. ..++.. .
T Consensus 61 ~~~~~~~~~e~~~~aD~Vi~~v~~~~-~-~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~--~ 132 (328)
T PRK14618 61 ELYPTADPEEALAGADFAVVAVPSKA-L-RETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAV--L 132 (328)
T ss_pred CeEEeCCHHHHHcCCCEEEEECchHH-H-HHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEE--E
Confidence 36677788777899999999999993 3 4444 34556777666665554 4455554421 112221 1
Q ss_pred CCCCCCC------ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942 113 FNPVPMM------KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG 157 (160)
Q Consensus 113 ~~P~~~~------~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG 157 (160)
-.|.... +-.-++. ..+++..+++..++...|..+....|.-|
T Consensus 133 ~gP~~a~~~~~~~~~~~~~~--~~~~~~~~~v~~ll~~~~~~v~~~~di~g 181 (328)
T PRK14618 133 SGPNHAEEIARFLPAATVVA--SPEPGLARRVQAAFSGPSFRVYTSRDRVG 181 (328)
T ss_pred ECccHHHHHHcCCCeEEEEE--eCCHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 2333322 2223333 34788899999999999988877677655
No 71
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=95.00 E-value=0.65 Score=38.89 Aligned_cols=141 Identities=15% Similarity=0.123 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHhcCCc---hhhhhhHHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEE
Q psy3942 9 EEGEKLIDSTLSRIKGSSK---EEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAIL 85 (160)
Q Consensus 9 ~~a~~~i~~~l~~~~~~~~---~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ii 85 (160)
+.....|+.......+.-. ...-.+..---..+.+++|=.+|++++|++|==.|.--. --++.+++-..+++++||
T Consensus 94 e~vmp~ir~~v~~~a~~~pkppk~~ihf~~pEdaGvkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII 172 (342)
T PRK00961 94 EKVMPKIREKVKAKAKELPKPPKGCIHFVHPEDLGLKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIV 172 (342)
T ss_pred HHhhHHHHHHHHHHHhhCCCCCccceeecCHHHcCceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEE
Confidence 5555666666665544311 000000111114565555544799999999987775431 247888888899999988
Q ss_pred eecCCCCCHHHHhc---ccCCCC-cEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 86 ASNTSSLSITEIAS---VTNRKD-KFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 86 asnTS~l~i~~la~---~~~~p~-r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
+ ||-++|...|.. .++|.+ .+..+|+-.= +.++-==.+.-...++|.+++..+++++.||.|.++
T Consensus 173 ~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaV-Pgt~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~ 241 (342)
T PRK00961 173 T-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGAV-PEMKGQVYIAEGYADEEAVEKLYEIGKKARGNAFKM 241 (342)
T ss_pred e-ccccCCHHHHHHHHHHhCcccCCeeccCCCCC-CCCCCceecccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 6 555666665554 444433 4555555442 233311122345678888999999999999999987
No 72
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.21 E-value=0.18 Score=42.59 Aligned_cols=114 Identities=10% Similarity=0.043 Sum_probs=73.4
Q ss_pred cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH------HH-HhcccCCCCcEEEee
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI------TE-IASVTNRKDKFVGLH 111 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i------~~-la~~~~~p~r~ig~H 111 (160)
.++..++|+++++.++|+|+=|+| ...=+++++++....++++++.|-+-++.. ++ |.+.+.. .++..
T Consensus 63 ~~i~~t~d~~~a~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~-- 137 (341)
T PRK12439 63 DTLRATTDFAEAANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGI-- 137 (341)
T ss_pred CCeEEECCHHHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEE--
Confidence 357788898778999999999998 444567899999999999766655556664 33 3333321 23221
Q ss_pred cCCCCCCC-----ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCcc
Q psy3942 112 FFNPVPMM-----KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158 (160)
Q Consensus 112 f~~P~~~~-----~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf 158 (160)
+..|-+.. ....++-+.. +++..+.+.+++..-+..+....|.-|.
T Consensus 138 l~GP~~a~ev~~g~~t~~via~~-~~~~~~~v~~lf~~~~~~v~~s~Di~gv 188 (341)
T PRK12439 138 LAGPNIAREVAEGYAAAAVLAMP-DQHLATRLSPLFRTRRFRVYTTDDVVGV 188 (341)
T ss_pred EECCCHHHHHHcCCCeEEEEEeC-CHHHHHHHHHHhCCCCEEEEEcCchHHH
Confidence 33443321 1122222222 6777888888888888777777776653
No 73
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.88 E-value=0.13 Score=44.96 Aligned_cols=68 Identities=22% Similarity=0.428 Sum_probs=46.9
Q ss_pred CceecCChhhhcCCCcEEEEecc----------CChHHH------------------------HHHHHHHhhhCCCCcEE
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIV----------ENMDIK------------------------HKLFTSVDKIAPASAIL 85 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~----------E~l~~K------------------------~~v~~~l~~~~~~~~ii 85 (160)
++..|+|.++|+.|||+||-++. |.+.+| +++.+++.+.|| +++|
T Consensus 62 ~v~~t~d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~P-da~l 140 (419)
T cd05296 62 KVHLTTDRREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAP-DAWL 140 (419)
T ss_pred EEEEeCCHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCC-CeEE
Confidence 58889999999999999998753 333333 388888999984 5544
Q ss_pred --eecCCCCCHHHHhcccCCCCcEEEe
Q psy3942 86 --ASNTSSLSITEIASVTNRKDKFVGL 110 (160)
Q Consensus 86 --asnTS~l~i~~la~~~~~p~r~ig~ 110 (160)
.||-..+-...+...+ +.|++|+
T Consensus 141 in~TNP~~ivt~a~~k~~--~~rviGl 165 (419)
T cd05296 141 INFTNPAGIVTEAVLRHT--GDRVIGL 165 (419)
T ss_pred EEecCHHHHHHHHHHHhc--cCCEEee
Confidence 3776664333333333 7788887
No 74
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=93.60 E-value=1.2 Score=35.00 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=63.2
Q ss_pred hhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH-----------------HHHhcccCCCCcEEE
Q psy3942 47 VEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI-----------------TEIASVTNRKDKFVG 109 (160)
Q Consensus 47 ~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i-----------------~~la~~~~~p~r~ig 109 (160)
..++++++|+||=|++-.. =.++++++....++ .++.+-+-.+++ ..++..+....|++.
T Consensus 62 ~~ea~~~aDvVilavp~~~--~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVk 138 (219)
T TIGR01915 62 NAEAAKRADVVILAVPWDH--VLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVA 138 (219)
T ss_pred hHHHHhcCCEEEEECCHHH--HHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEee
Confidence 3367899999999998443 24556667665554 667666655554 345555543267776
Q ss_pred eecCCCCC-------CCceEEEecCCCCCHHHHHHHHHHHHHc-CCeEEEe
Q psy3942 110 LHFFNPVP-------MMKLLEVIRTNDTSDATYNAVTEWGKSI-GKTTIVC 152 (160)
Q Consensus 110 ~Hf~~P~~-------~~~lVEvv~~~~T~~~~~~~~~~~~~~l-gk~pv~v 152 (160)
.-...|.. ..+.--.+.|. +++..+.+.+|.+.+ |..|+-+
T Consensus 139 a~~~~~a~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~ 187 (219)
T TIGR01915 139 AFHNLSAVLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDA 187 (219)
T ss_pred ccccCCHHHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccC
Confidence 62211211 11222234444 577889999999999 9999865
No 75
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=93.49 E-value=0.23 Score=43.50 Aligned_cols=69 Identities=20% Similarity=0.351 Sum_probs=45.4
Q ss_pred CceecCChhhhcCCCcEEEEecc----------CChHHHH------------------------HHHHHHhhhCCCCcEE
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIV----------ENMDIKH------------------------KLFTSVDKIAPASAIL 85 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~----------E~l~~K~------------------------~v~~~l~~~~~~~~ii 85 (160)
++..|+|.++|+.|||+||-++. |.+.+|. ++.+++.+.| |+++|
T Consensus 61 ~v~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~l 139 (425)
T cd05197 61 KFEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWY 139 (425)
T ss_pred EEEEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEE
Confidence 68889999999999999998764 3333444 8888899988 45543
Q ss_pred --eecCCCCCHHHHhcccCCCCcEEEe
Q psy3942 86 --ASNTSSLSITEIASVTNRKDKFVGL 110 (160)
Q Consensus 86 --asnTS~l~i~~la~~~~~p~r~ig~ 110 (160)
.||-..+-..-+...+ -+.|++|+
T Consensus 140 in~TNP~di~t~a~~~~~-p~~rviG~ 165 (425)
T cd05197 140 LNFTNPAGEVTEAVRRYV-PPEKAVGL 165 (425)
T ss_pred EecCChHHHHHHHHHHhC-CCCcEEEE
Confidence 3665544333332222 23566665
No 76
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=93.42 E-value=0.94 Score=37.71 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=70.0
Q ss_pred CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH---HHhcccCCCCcEEEeecCCCC
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT---EIASVTNRKDKFVGLHFFNPV 116 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~---~la~~~~~p~r~ig~Hf~~P~ 116 (160)
-++.++|-.++++.+.+.+=-.|=- ..--.|-++|-.+++.+++||.....-|+. -|-..++.+.+=+|+-.++|+
T Consensus 69 GV~vv~dD~eaa~~~Ei~VLFTPFG-k~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPA 147 (340)
T COG4007 69 GVEVVSDDAEAAEHGEIHVLFTPFG-KATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPA 147 (340)
T ss_pred CcEEecCchhhhhcceEEEEecccc-hhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCC
Confidence 3455544446788888876544422 133456778888899999998433222222 233445667677787777764
Q ss_pred CC----CceEEEecCCCC------CHHHHHHHHHHHHHcCCeEEEe
Q psy3942 117 PM----MKLLEVIRTNDT------SDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 117 ~~----~~lVEvv~~~~T------~~~~~~~~~~~~~~lgk~pv~v 152 (160)
-. ..=-=++.|..| +++-+++...+++++||.+.++
T Consensus 148 gvPGtp~h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~ 193 (340)
T COG4007 148 GVPGTPQHGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVL 193 (340)
T ss_pred CCCCCCCCceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEec
Confidence 31 112234444433 4677899999999999999987
No 77
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.41 E-value=0.12 Score=43.22 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=49.4
Q ss_pred hcCceecCChhhhcCCCcEEEEecc--------------CChHHHHHHHHHHhhhCCCCc-EEeecCCCCCHHHHhcccC
Q psy3942 38 LSRIKGSSKVEDSVSQSDLVIEAIV--------------ENMDIKHKLFTSVDKIAPASA-ILASNTSSLSITEIASVTN 102 (160)
Q Consensus 38 l~~i~~~~~~~~al~~adlViEav~--------------E~l~~K~~v~~~l~~~~~~~~-iiasnTS~l~i~~la~~~~ 102 (160)
..+|++++|++ ++++||+||=++. .|.++=+++.++|.+.+++.. |+.||-..+-..-+...++
T Consensus 55 ~~~i~~t~d~~-~~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg 133 (305)
T TIGR01763 55 DTKVTGTNNYA-DTANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSG 133 (305)
T ss_pred CcEEEecCCHH-HhCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHC
Confidence 36899999995 5999999999998 466777888888999874333 4446654443333333334
Q ss_pred C-CCcEEEe
Q psy3942 103 R-KDKFVGL 110 (160)
Q Consensus 103 ~-p~r~ig~ 110 (160)
. ++|++|+
T Consensus 134 ~~~~rviG~ 142 (305)
T TIGR01763 134 FPKERVIGQ 142 (305)
T ss_pred cCHHHEEEe
Confidence 4 3577776
No 78
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=93.26 E-value=0.55 Score=43.34 Aligned_cols=87 Identities=10% Similarity=0.059 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhhCCCCcEEeecCCCC--CHHHHhcccCC-CCcEEEeecCCCCC------------CCceEEEecCCCC
Q psy3942 66 DIKHKLFTSVDKIAPASAILASNTSSL--SITEIASVTNR-KDKFVGLHFFNPVP------------MMKLLEVIRTNDT 130 (160)
Q Consensus 66 ~~K~~v~~~l~~~~~~~~iiasnTS~l--~i~~la~~~~~-p~r~ig~Hf~~P~~------------~~~lVEvv~~~~T 130 (160)
+.=.+++.++....+++|++.=-+|.= .+..+...+.. +.+|+|.|++.-.. ....+=+++.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~il~p~~~~ 87 (673)
T PRK11861 8 AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNVVLCALPEN 87 (673)
T ss_pred HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeEEEecCCCC
Confidence 334578888888889999887444432 23344344432 35799999987554 3345667788999
Q ss_pred CHHHHHHHHHHHHHcCCeEEEe
Q psy3942 131 SDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 131 ~~~~~~~~~~~~~~lgk~pv~v 152 (160)
+++.++++.+|++.+|..++.+
T Consensus 88 ~~~~~~~~~~l~~~~Ga~~~~~ 109 (673)
T PRK11861 88 APDALARVEAMWRAARADVRAM 109 (673)
T ss_pred CHHHHHHHHHHHHHcCCEEEEC
Confidence 9999999999999999999886
No 79
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=93.11 E-value=0.32 Score=40.59 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=73.1
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHH--HHhhhCCCCcEEeec-CCCC-CHHHHhcccCCCCcEEEeecCC-C
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFT--SVDKIAPASAILASN-TSSL-SITEIASVTNRKDKFVGLHFFN-P 115 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~--~l~~~~~~~~iiasn-TS~l-~i~~la~~~~~p~r~ig~Hf~~-P 115 (160)
.....+..++++++|+||=+++.+-+++.=+|. -+-+..+|++++.-. |.+. ...++++.+. --|++|+. |
T Consensus 45 a~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~----~~G~~~lDAP 120 (286)
T COG2084 45 ATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALA----AKGLEFLDAP 120 (286)
T ss_pred CcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHH----hcCCcEEecC
Confidence 334455557899999999999999998877773 454555677766633 3332 2236666553 24667776 4
Q ss_pred CCCCc------eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy3942 116 VPMMK------LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDT 155 (160)
Q Consensus 116 ~~~~~------lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~ 155 (160)
+.-.+ -+=|+. .-+++.+++++-+++.+|+..+.+.+.
T Consensus 121 VsGg~~~A~~GtLtimv--GG~~~~f~r~~pvl~~~g~~i~~~G~~ 164 (286)
T COG2084 121 VSGGVPGAAAGTLTIMV--GGDAEAFERAKPVLEAMGKNIVHVGPV 164 (286)
T ss_pred ccCCchhhhhCceEEEe--CCCHHHHHHHHHHHHHhcCceEEECCC
Confidence 33222 122332 447899999999999999999999654
No 80
>PRK06444 prephenate dehydrogenase; Provisional
Probab=92.98 E-value=1.3 Score=34.93 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=56.3
Q ss_pred cCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCC-CCCc-e--EEEec
Q psy3942 51 VSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPV-PMMK-L--LEVIR 126 (160)
Q Consensus 51 l~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~-~~~~-l--VEvv~ 126 (160)
+++||+||=|+|.+.- .++++++. .+| +-.+|.-- .+... ..+++|.|++.-| ...+ | .=++.
T Consensus 29 ~~~~DlVilavPv~~~--~~~i~~~~------~~v-~Dv~SvK~-~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv~ 95 (197)
T PRK06444 29 IKKADHAFLSVPIDAA--LNYIESYD------NNF-VEISSVKW-PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIFI 95 (197)
T ss_pred ECCCCEEEEeCCHHHH--HHHHHHhC------CeE-EeccccCH-HHHHh---cCCEEecCCCCCCCcCcccccceEEEE
Confidence 6899999999998753 34455543 133 34444444 23322 3489999997743 3221 1 22334
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 127 TNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 127 ~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
.+.++++.++.+.+|++ |..++..
T Consensus 96 ~~~~~~~~~~~~~~l~~--G~~~~~~ 119 (197)
T PRK06444 96 NDISRDNYLNEINEMFR--GYHFVEM 119 (197)
T ss_pred CCCCCHHHHHHHHHHHc--CCEEEEe
Confidence 77899999999999988 8877765
No 81
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.88 E-value=0.25 Score=36.94 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=41.7
Q ss_pred cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCC
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSL 92 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l 92 (160)
..+..++|++++++++|+|+=++|=.- =++++++|....+++.+|.+.+=++
T Consensus 55 ~~i~~t~dl~~a~~~ad~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 55 ENIKATTDLEEALEDADIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp TTEEEESSHHHHHTT-SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cccccccCHHHHhCcccEEEecccHHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence 468889999889999999999998766 4799999999999999999988776
No 82
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=91.83 E-value=0.17 Score=39.47 Aligned_cols=69 Identities=19% Similarity=0.362 Sum_probs=43.8
Q ss_pred cCceecCChhhhcCCCcEEEEecc--------------CChH----------------------HHHHHHHHHhhhCCCC
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIV--------------ENMD----------------------IKHKLFTSVDKIAPAS 82 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~--------------E~l~----------------------~K~~v~~~l~~~~~~~ 82 (160)
-+++.|+|.++|++|||+||-++- ...- +=.++.++++++|| |
T Consensus 59 ~~v~~ttd~~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~P-d 137 (183)
T PF02056_consen 59 LKVEATTDRREALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCP-D 137 (183)
T ss_dssp SEEEEESSHHHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTT-T
T ss_pred eEEEEeCCHHHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCC-C
Confidence 367889999999999999997653 2222 33478889999985 5
Q ss_pred cEEe--ecCCCCCHHHHhcccCCC-CcEEEe
Q psy3942 83 AILA--SNTSSLSITEIASVTNRK-DKFVGL 110 (160)
Q Consensus 83 ~iia--snTS~l~i~~la~~~~~p-~r~ig~ 110 (160)
+-+- ||-+++-...+.... | .|++|+
T Consensus 138 Aw~iNytNP~~~vt~a~~r~~--~~~k~vGl 166 (183)
T PF02056_consen 138 AWLINYTNPMGIVTEALSRYT--PKIKVVGL 166 (183)
T ss_dssp SEEEE-SSSHHHHHHHHHHHS--TTSEEEEE
T ss_pred cEEEeccChHHHHHHHHHHhC--CCCCEEEE
Confidence 5444 554444333333222 5 688887
No 83
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=91.79 E-value=3.3 Score=34.79 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=74.7
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCC--
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPM-- 118 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~-- 118 (160)
++.+ +..++++++|+|+=++|..-. ...+.+++....+++. +.|-..++++..+...+...-+++-+=+=-|.+.
T Consensus 48 v~~~-s~~ea~~~ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr 124 (314)
T TIGR00465 48 FKVG-TVEEAIPQADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVR 124 (314)
T ss_pred CEEC-CHHHHHhcCCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHH
Confidence 4544 455678999999999996533 4466677877777775 7888899999999877754345665555556653
Q ss_pred -----CceE-EEe-cCCCCCHHHHHHHHHHHHHcCCe
Q psy3942 119 -----MKLL-EVI-RTNDTSDATYNAVTEWGKSIGKT 148 (160)
Q Consensus 119 -----~~lV-Evv-~~~~T~~~~~~~~~~~~~~lgk~ 148 (160)
..=+ =++ .+...+.+..+.+.+++..+|+.
T Consensus 125 ~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 125 EEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred HHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 2222 232 55566788899999999999998
No 84
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=90.66 E-value=1.2 Score=36.73 Aligned_cols=109 Identities=14% Similarity=0.167 Sum_probs=64.9
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHH--HhhhCCCCcEEeecCCCCCHH---HHhcccC-CCCcEEEeecCC
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTS--VDKIAPASAILASNTSSLSIT---EIASVTN-RKDKFVGLHFFN 114 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~--l~~~~~~~~iiasnTS~l~i~---~la~~~~-~p~r~ig~Hf~~ 114 (160)
.....+..++++++|+||=|++.+-.++.-++.. +-..+.++.++. ++|++++. +++..+. +--+++.. +..
T Consensus 43 ~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivv-d~sT~~p~~~~~~~~~~~~~G~~~vda-PVs 120 (292)
T PRK15059 43 AVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIV-DMSSISPIETKRFARQVNELGGDYLDA-PVS 120 (292)
T ss_pred CeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEE-ECCCCCHHHHHHHHHHHHHcCCCEEEe-cCC
Confidence 3445556567789999999999997777655542 233345565543 23333333 5655543 23344442 222
Q ss_pred C-CC---CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942 115 P-VP---MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD 154 (160)
Q Consensus 115 P-~~---~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d 154 (160)
. +. ...|. ++. .-+++.+++++.+++.+|+..+.+.+
T Consensus 121 Gg~~~a~~g~l~-~~~--gG~~~~~~~~~p~l~~~g~~~~~~G~ 161 (292)
T PRK15059 121 GGEIGAREGTLS-IMV--GGDEAVFERVKPLFELLGKNITLVGG 161 (292)
T ss_pred CCHHHHhcCcEE-EEE--cCCHHHHHHHHHHHHHHcCCcEEeCC
Confidence 1 11 11122 222 34789999999999999999888865
No 85
>PRK15076 alpha-galactosidase; Provisional
Probab=90.34 E-value=0.6 Score=40.94 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=45.6
Q ss_pred cCceecCChhhhcCCCcEEEEeccCC-hH------------------------------------HHHHHHHHHhhhCCC
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVEN-MD------------------------------------IKHKLFTSVDKIAPA 81 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~-l~------------------------------------~K~~v~~~l~~~~~~ 81 (160)
.+|+.++|+.++++|||+|++++.-. .+ +=+++.+++++.| |
T Consensus 61 ~~i~~ttD~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~-p 139 (431)
T PRK15076 61 AKITATTDRREALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVC-P 139 (431)
T ss_pred eEEEEECCHHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHC-C
Confidence 47888999767999999999998653 11 2347778888888 5
Q ss_pred CcEEe--ecCCCCCHHHHhcccCCCCcEEEe
Q psy3942 82 SAILA--SNTSSLSITEIASVTNRKDKFVGL 110 (160)
Q Consensus 82 ~~iia--snTS~l~i~~la~~~~~p~r~ig~ 110 (160)
+++|- ||-..+-...+. .. .+.|++|+
T Consensus 140 ~a~iin~tNP~divt~~~~-~~-~~~rviG~ 168 (431)
T PRK15076 140 DALLLNYVNPMAMNTWAMN-RY-PGIKTVGL 168 (431)
T ss_pred CeEEEEcCChHHHHHHHHh-cC-CCCCEEEE
Confidence 56443 555544333332 22 23689887
No 86
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=90.18 E-value=1.2 Score=37.19 Aligned_cols=69 Identities=23% Similarity=0.285 Sum_probs=46.6
Q ss_pred CceecCChhhhcCCCcEEEEecc------CC-h-------HHHHHHHHHHhhhCCCCcEEeecCCCCCHHH--HhcccCC
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIV------EN-M-------DIKHKLFTSVDKIAPASAILASNTSSLSITE--IASVTNR 103 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~------E~-l-------~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~--la~~~~~ 103 (160)
+|+.+++++ ++++||+||=|+. ++ . ++=+++...|.+.+ |++++...++..++.- +...++.
T Consensus 60 ~i~~~~d~~-~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~-~~~~viv~~npvd~~t~~~~~~~g~ 137 (309)
T cd05294 60 EIKISSDLS-DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFA-PDTKILVVTNPVDVMTYKALKESGF 137 (309)
T ss_pred EEEECCCHH-HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHhcCC
Confidence 567777884 7999999999986 12 2 44667777888887 4776666666555442 3333444
Q ss_pred -CCcEEEe
Q psy3942 104 -KDKFVGL 110 (160)
Q Consensus 104 -p~r~ig~ 110 (160)
|.|++|+
T Consensus 138 ~~~~viG~ 145 (309)
T cd05294 138 DKNRVFGL 145 (309)
T ss_pred CHHHEeec
Confidence 4688987
No 87
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=89.59 E-value=6.6 Score=32.42 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=75.2
Q ss_pred cCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEE
Q psy3942 44 SSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLE 123 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVE 123 (160)
+++..+++..+|+|+=|+. ...=.+++++|.. ..++.+|.|=..+++++.|..++. ..+++-+=+--|.-...-+=
T Consensus 53 ~~~~~~~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t 128 (266)
T COG0345 53 TTDNQEAVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVT 128 (266)
T ss_pred cCcHHHHHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcce
Confidence 5665567889999998872 2333466666766 678999999999999999999997 44555443333333333333
Q ss_pred Ee-cCCCCCHHHHHHHHHHHHHcCCeEEE
Q psy3942 124 VI-RTNDTSDATYNAVTEWGKSIGKTTIV 151 (160)
Q Consensus 124 vv-~~~~T~~~~~~~~~~~~~~lgk~pv~ 151 (160)
.+ .+...+++-.+.+.+++..+|+..-+
T Consensus 129 ~i~~~~~~~~~~~~~v~~l~~~~G~v~~v 157 (266)
T COG0345 129 AISANANVSEEDKAFVEALLSAVGKVVEV 157 (266)
T ss_pred eeecCccCCHHHHHHHHHHHHhcCCeEEe
Confidence 33 45788889999999999999996554
No 88
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.56 E-value=0.56 Score=36.35 Aligned_cols=58 Identities=14% Similarity=0.332 Sum_probs=38.5
Q ss_pred cCceecCChhhhcCCCcEEEEeccCC--------hHHHHHHHHHHhhhCCCCcEEe-ecCCCCCHHH
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVEN--------MDIKHKLFTSVDKIAPASAILA-SNTSSLSITE 96 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~--------l~~K~~v~~~l~~~~~~~~iia-snTS~l~i~~ 96 (160)
++++++++++++++++|+++=|||=. +..=.+..+.|...+.++.++. -+|-..-.++
T Consensus 62 ~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 62 GRLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE 128 (185)
T ss_dssp TSEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH
T ss_pred ccchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh
Confidence 78999999987899999999999743 3444677888888887766544 4444444444
No 89
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=88.37 E-value=1.6 Score=36.15 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=55.1
Q ss_pred CceecCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcEEe--ecCCCCCHHHHhcccCC
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAILA--SNTSSLSITEIASVTNR 103 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~iia--snTS~l~i~~la~~~~~ 103 (160)
++..++++ +++++||+||=++.= |..+=+++..++.+.+ |++++. ||-..+-..-+....+.
T Consensus 54 ~i~~~~~~-~~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP~d~~~~~~~~~sg~ 131 (300)
T cd00300 54 TIVRGGDY-ADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNPVDILTYVAQKLSGL 131 (300)
T ss_pred eEEECCCH-HHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccChHHHHHHHHHHHhCc
Confidence 45546778 589999999988862 4445677888999998 666544 44333222222222333
Q ss_pred -CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 104 -KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 104 -p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
|.|++|+ .|..++...-..+++.+|..|
T Consensus 132 ~~~kviG~------------------gt~lDs~r~~~~la~~l~v~~ 160 (300)
T cd00300 132 PKNRVIGS------------------GTLLDSARFRSLLAEKLDVDP 160 (300)
T ss_pred CHHHEEec------------------CCcHHHHHHHHHHHHHhCCCc
Confidence 5788886 455555555555556666544
No 90
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=88.20 E-value=3.7 Score=36.49 Aligned_cols=99 Identities=12% Similarity=0.184 Sum_probs=63.5
Q ss_pred ceecCChhhhcC---CCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH--HHhcccCCCCcEEEeecCC-
Q psy3942 41 IKGSSKVEDSVS---QSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT--EIASVTNRKDKFVGLHFFN- 114 (160)
Q Consensus 41 i~~~~~~~~al~---~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~--~la~~~~~p~r~ig~Hf~~- 114 (160)
+..++++++.++ ++|+|+=+++-.-.++. ++.+|-..+.++.||.-.+.+.+-. +++..+.. -|+||..
T Consensus 51 i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~-vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~----~Gi~flda 125 (470)
T PTZ00142 51 VKGYHTLEELVNSLKKPRKVILLIKAGEAVDE-TIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE----KGILYLGM 125 (470)
T ss_pred ceecCCHHHHHhcCCCCCEEEEEeCChHHHHH-HHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH----cCCeEEcC
Confidence 556777766554 58999999888777764 5577877777777776444443333 33333321 2555544
Q ss_pred CCC-------CCceEEEecCCCCCHHHHHHHHHHHHHcCCe
Q psy3942 115 PVP-------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKT 148 (160)
Q Consensus 115 P~~-------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~ 148 (160)
|+. ..+ . ++.|. ++++++++..+++.++..
T Consensus 126 pVSGG~~gA~~G~-~-lm~GG--~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 126 GVSGGEEGARYGP-S-LMPGG--NKEAYDHVKDILEKCSAK 162 (470)
T ss_pred CCCCCHHHHhcCC-E-EEEeC--CHHHHHHHHHHHHHHhhh
Confidence 322 223 2 45444 688999999999999987
No 91
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=87.49 E-value=3.2 Score=35.33 Aligned_cols=114 Identities=14% Similarity=0.195 Sum_probs=72.5
Q ss_pred cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCC------CCCHHHHhcccCCCCcEEEeec
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTS------SLSITEIASVTNRKDKFVGLHF 112 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS------~l~i~~la~~~~~p~r~ig~Hf 112 (160)
..|..++|++++++++|+|+-++|=. .=+++.+++....++++++.+.|= ...++++....-...+ +++ .
T Consensus 57 ~~l~at~Dl~~a~~~ad~iv~avPs~--~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~-~~v-L 132 (329)
T COG0240 57 PNLKATTDLAEALDGADIIVIAVPSQ--ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNP-IAV-L 132 (329)
T ss_pred cccccccCHHHHHhcCCEEEEECChH--HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCe-EEE-E
Confidence 56888999999999999999999854 467888888888899999988774 4455666654322222 332 3
Q ss_pred CCCCCCC----ce-EEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942 113 FNPVPMM----KL-LEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG 157 (160)
Q Consensus 113 ~~P~~~~----~l-VEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG 157 (160)
.-|.+.. .+ -+++- ...+++..+++..++..=-.++....|..|
T Consensus 133 SGPs~A~EVa~g~pta~~v-as~d~~~a~~v~~~f~~~~Frvy~~~Dv~G 181 (329)
T COG0240 133 SGPSFAKEVAQGLPTAVVV-ASNDQEAAEKVQALFSSPYFRVYTSTDVIG 181 (329)
T ss_pred ECccHHHHHhcCCCcEEEE-ecCCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 3444311 11 12222 345666767777766664445555566655
No 92
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=87.22 E-value=3.2 Score=36.57 Aligned_cols=68 Identities=13% Similarity=0.267 Sum_probs=45.2
Q ss_pred CceecCChhhhcCCCcEEEEeccCC----------------------------------hHHHHHHHHHHhhhCCCCcEE
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVEN----------------------------------MDIKHKLFTSVDKIAPASAIL 85 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E~----------------------------------l~~K~~v~~~l~~~~~~~~ii 85 (160)
+|+.|+|..+|++|||+||-++--. ..+=+++.+++++.| |++++
T Consensus 61 ~v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~-pda~l 139 (437)
T cd05298 61 KFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYS-PDAWI 139 (437)
T ss_pred EEEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHC-CCeEE
Confidence 6888999999999999999876422 123458888999998 55543
Q ss_pred --eecCCCCCHHHHhcccCCC-CcEEEe
Q psy3942 86 --ASNTSSLSITEIASVTNRK-DKFVGL 110 (160)
Q Consensus 86 --asnTS~l~i~~la~~~~~p-~r~ig~ 110 (160)
.||-..+-..-+... .| .|++|+
T Consensus 140 in~tNP~~~vt~~~~~~--~~~~kviGl 165 (437)
T cd05298 140 LNYSNPAAIVAEALRRL--FPNARILNI 165 (437)
T ss_pred EEecCcHHHHHHHHHHH--CCCCCEEEE
Confidence 356554332233222 33 588886
No 93
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=86.57 E-value=6.9 Score=34.84 Aligned_cols=112 Identities=13% Similarity=0.162 Sum_probs=66.7
Q ss_pred CceecCChhhhcCCCcEEEEeccC-------------ChHHHHHHHHHHhhhCCCCcEEe-ecCCCCCHH-HHhcccCC-
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVE-------------NMDIKHKLFTSVDKIAPASAILA-SNTSSLSIT-EIASVTNR- 103 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E-------------~l~~K~~v~~~l~~~~~~~~iia-snTS~l~i~-~la~~~~~- 103 (160)
++++++++++++++||++|=||+= |+.-=.+..++|.+.++++.++. .+|-..-.+ ++...+..
T Consensus 65 ~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~ 144 (473)
T PLN02353 65 NLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHN 144 (473)
T ss_pred CEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhh
Confidence 599999997789999999999951 44456788888999988777544 444333333 33322211
Q ss_pred -CCcEEEeecCCCCCCCc---------eEEEecCCCC---CHHHHHHHHHHHHHcCC-eEEEe
Q psy3942 104 -KDKFVGLHFFNPVPMMK---------LLEVIRTNDT---SDATYNAVTEWGKSIGK-TTIVC 152 (160)
Q Consensus 104 -p~r~ig~Hf~~P~~~~~---------lVEvv~~~~T---~~~~~~~~~~~~~~lgk-~pv~v 152 (160)
+..=+.+ -|||-.+.+ .--||-|..+ +++..+.+.++++.+-+ .|+++
T Consensus 145 ~~g~~f~v-~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~ 206 (473)
T PLN02353 145 SKGINFQI-LSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIIT 206 (473)
T ss_pred CCCCCeEE-EECCCccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEe
Confidence 1100111 134443322 2335544333 25678889999988643 55555
No 94
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=85.48 E-value=3.9 Score=33.69 Aligned_cols=106 Identities=10% Similarity=0.127 Sum_probs=63.6
Q ss_pred ceecCChhhhcCC---CcEEEEeccCChHHHHHHHHHHhhhCCCCcEEe-ecCCC-CCHHHHhcccCCCCcEEEeecCC-
Q psy3942 41 IKGSSKVEDSVSQ---SDLVIEAIVENMDIKHKLFTSVDKIAPASAILA-SNTSS-LSITEIASVTNRKDKFVGLHFFN- 114 (160)
Q Consensus 41 i~~~~~~~~al~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~iia-snTS~-l~i~~la~~~~~p~r~ig~Hf~~- 114 (160)
.+.+.+.++.+.+ +|+|+=|+|-+-.++ +++..+-...+++.++. ++|++ -...+++..+... |.+|..
T Consensus 44 ~~~~~s~~~~~~~~~~advVi~~vp~~~~~~-~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~vda 118 (299)
T PRK12490 44 ITARHSLEELVSKLEAPRTIWVMVPAGEVTE-SVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAER----GIHYVDC 118 (299)
T ss_pred CeecCCHHHHHHhCCCCCEEEEEecCchHHH-HHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHc----CCeEEeC
Confidence 4556677555554 699999999886655 44566666666666554 33333 3445666655322 345554
Q ss_pred CCCCC------ceEEEecCCCCCHHHHHHHHHHHHHcCC---eEEEecC
Q psy3942 115 PVPMM------KLLEVIRTNDTSDATYNAVTEWGKSIGK---TTIVCKD 154 (160)
Q Consensus 115 P~~~~------~lVEvv~~~~T~~~~~~~~~~~~~~lgk---~pv~v~d 154 (160)
|+.-. ... ++. .-+++++++++.+++.+|+ ..+.+.+
T Consensus 119 pV~G~~~~a~~g~~-~~~--gG~~~~~~~~~~~l~~~~~~~~~~~~~G~ 164 (299)
T PRK12490 119 GTSGGVWGLRNGYC-LMV--GGDKEIYDRLEPVFKALAPEGPGYVHAGP 164 (299)
T ss_pred CCCCCHHHHhcCCe-EEe--cCCHHHHHHHHHHHHHhcCcCCcEEEECC
Confidence 22211 112 332 2368899999999999997 5566654
No 95
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=85.34 E-value=3.3 Score=34.16 Aligned_cols=107 Identities=11% Similarity=0.114 Sum_probs=63.7
Q ss_pred CceecCChhhhcCC---CcEEEEeccCChHHHHHHHHHHhhhCCCCcEEe-ecCCCCC-HHHHhcccCCCCcEEEeecCC
Q psy3942 40 RIKGSSKVEDSVSQ---SDLVIEAIVENMDIKHKLFTSVDKIAPASAILA-SNTSSLS-ITEIASVTNRKDKFVGLHFFN 114 (160)
Q Consensus 40 ~i~~~~~~~~al~~---adlViEav~E~l~~K~~v~~~l~~~~~~~~iia-snTS~l~-i~~la~~~~~p~r~ig~Hf~~ 114 (160)
..+..++.++.++. +|+|+=++|-.-.++ +++..+...++++.++. ++|++.. ..+++..+... |++|..
T Consensus 43 g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~-~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~d 117 (301)
T PRK09599 43 GATGADSLEELVAKLPAPRVVWLMVPAGEITD-ATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVD 117 (301)
T ss_pred CCeecCCHHHHHhhcCCCCEEEEEecCCcHHH-HHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEe
Confidence 34556666544444 699999999875554 45566766666666554 3333332 33455544322 455544
Q ss_pred -CCCCC------ceEEEecCCCCCHHHHHHHHHHHHHcCC----eEEEecC
Q psy3942 115 -PVPMM------KLLEVIRTNDTSDATYNAVTEWGKSIGK----TTIVCKD 154 (160)
Q Consensus 115 -P~~~~------~lVEvv~~~~T~~~~~~~~~~~~~~lgk----~pv~v~d 154 (160)
|+.-. .+. ++.| -+++++++++.+++.+++ ..+.+.+
T Consensus 118 apvsG~~~~a~~g~~-~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G~ 165 (301)
T PRK09599 118 VGTSGGVWGLERGYC-LMIG--GDKEAVERLEPIFKALAPRAEDGYLHAGP 165 (301)
T ss_pred CCCCcCHHHHhcCCe-EEec--CCHHHHHHHHHHHHHHcccccCCeEeECC
Confidence 32211 121 3333 578999999999999999 5566654
No 96
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=85.16 E-value=7.5 Score=32.02 Aligned_cols=100 Identities=7% Similarity=0.010 Sum_probs=60.5
Q ss_pred hcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCC--CHHHHhcccC-CCCcEEEeecCCCCC--CCceEEE
Q psy3942 50 SVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSL--SITEIASVTN-RKDKFVGLHFFNPVP--MMKLLEV 124 (160)
Q Consensus 50 al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l--~i~~la~~~~-~p~r~ig~Hf~~P~~--~~~lVEv 124 (160)
.+.++|+|+=++|-. . =++++.++...++++.++...+.+. ...+++..+. +.-+++.++-...+. ...+.=.
T Consensus 56 ~~~~~dvIi~~vp~~-~-~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~ 133 (298)
T TIGR00872 56 RLSAPRVVWVMVPHG-I-VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFM 133 (298)
T ss_pred hcCCCCEEEEEcCch-H-HHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeee
Confidence 456789999999988 4 4566788888887777666544433 3344444442 223455554332221 1122222
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCe---EEEecC
Q psy3942 125 IRTNDTSDATYNAVTEWGKSIGKT---TIVCKD 154 (160)
Q Consensus 125 v~~~~T~~~~~~~~~~~~~~lgk~---pv~v~d 154 (160)
+. -+++.++.+..+++.+++. .+.+.+
T Consensus 134 ~g---G~~~~~~~~~~~l~~~~~~~~~~~~~G~ 163 (298)
T TIGR00872 134 IG---GDGEAFARAEPLFADVAPEEQGYLYCGP 163 (298)
T ss_pred eC---CCHHHHHHHHHHHHHhcCcCCCEEEECC
Confidence 22 3688999999999999873 344543
No 97
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=84.94 E-value=1.1 Score=39.13 Aligned_cols=56 Identities=16% Similarity=0.304 Sum_probs=42.3
Q ss_pred cCceecCChhhhcCCCcEEEEeccCC--------hHHHHHHHHHHhhhCCCCcEEeecCCCCCHH
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVEN--------MDIKHKLFTSVDKIAPASAILASNTSSLSIT 95 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~--------l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~ 95 (160)
+|+++|+|++++++++|+++=|++=+ +..=..+.+++-.+.+..+++. +-|+.|+.
T Consensus 62 gRl~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvG 125 (414)
T COG1004 62 GRLRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVG 125 (414)
T ss_pred CcEEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCC
Confidence 57999999998999999999999753 4445677888888887755444 34566654
No 98
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=84.70 E-value=10 Score=30.33 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=66.7
Q ss_pred cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCC----------------CCCHHHHh-ccc
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTS----------------SLSITEIA-SVT 101 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS----------------~l~i~~la-~~~ 101 (160)
.+|+..+.. +|++.+|+|+=||| ++-=.++.+++..... +.|+.+.|= .-|.+++. +.+
T Consensus 47 ~~i~~~~~~-dA~~~aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~l 122 (211)
T COG2085 47 PLITGGSNE-DAAALADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLL 122 (211)
T ss_pred cccccCChH-HHHhcCCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHC
Confidence 445555555 68999999999997 5566788888888776 555543332 23344443 344
Q ss_pred CCCCcEEEe-ecCCCCCCCc-----eEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942 102 NRKDKFVGL-HFFNPVPMMK-----LLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK 153 (160)
Q Consensus 102 ~~p~r~ig~-Hf~~P~~~~~-----lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~ 153 (160)
.++ |++.. |-.....+-. .-=.+.=..-|.+..+.+.+|++++|..|+-+.
T Consensus 123 p~a-kVVkAFn~i~a~~l~~~~~~~~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G 179 (211)
T COG2085 123 PGA-KVVKAFNTIPAAVLADLAKPGGRRDVLVAGDDAEAKAVVAELAEDIGFRPLDAG 179 (211)
T ss_pred CCc-chhhhhcccCHHHhccCCCcCCceeEEEecCcHHHHHHHHHHHHhcCcceeecc
Confidence 444 45443 2111111111 111122235577899999999999999999863
No 99
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=84.44 E-value=2.2 Score=35.99 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=49.7
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH--HHHhcccC
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI--TEIASVTN 102 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i--~~la~~~~ 102 (160)
+.+++++++.++++|+|+-++|...+.+.-+.+++-+.++++++|...+-+--+ ..|...+.
T Consensus 186 ~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 186 LTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 445668878899999999999999999999999999999999988876655444 45656554
No 100
>PLN00135 malate dehydrogenase
Probab=84.43 E-value=3 Score=35.01 Aligned_cols=71 Identities=8% Similarity=0.090 Sum_probs=43.3
Q ss_pred cCceecCC-hhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcEEeecC--CCCCHHHHhccc
Q psy3942 39 SRIKGSSK-VEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAILASNT--SSLSITEIASVT 101 (160)
Q Consensus 39 ~~i~~~~~-~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~iiasnT--S~l~i~~la~~~ 101 (160)
..++.+++ + +++++||+||=+..= |.++=+++..+|.+.+.|++++..-| -.+-..-+...+
T Consensus 44 ~~i~~~~~~y-~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvsNPvDv~t~~~~~~s 122 (309)
T PLN00135 44 KGVVATTDVV-EACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEFA 122 (309)
T ss_pred CCcEecCCHH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCcHHHHHHHHHHHc
Confidence 35665566 7 589999999977643 33455677888888777888665433 222222333334
Q ss_pred CC-CCcEEEe
Q psy3942 102 NR-KDKFVGL 110 (160)
Q Consensus 102 ~~-p~r~ig~ 110 (160)
+. |.|++|+
T Consensus 123 g~~~~~vig~ 132 (309)
T PLN00135 123 PSIPEKNITC 132 (309)
T ss_pred CCCCccEEEe
Confidence 43 3466665
No 101
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=84.36 E-value=2.8 Score=30.66 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=43.5
Q ss_pred CChhhhcCCCcEEEEeccCChHHHHHHHHHHhhh--CCCCcEEeecCCCCCHHHHhcccCCCCcEEEeec
Q psy3942 45 SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKI--APASAILASNTSSLSITEIASVTNRKDKFVGLHF 112 (160)
Q Consensus 45 ~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~--~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf 112 (160)
.++.+.+.++|+++=|+|++ .=.++.++|... ..++.++.=.+-++++.-|.....+--.+..+|+
T Consensus 60 ~~~~~~~~~aDlv~iavpDd--aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 60 LDLEEILRDADLVFIAVPDD--AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp --TTGGGCC-SEEEE-S-CC--HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred cccccccccCCEEEEEechH--HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 34556789999999999999 356788888887 7788888877777777777766666667788884
No 102
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=82.69 E-value=9.5 Score=31.28 Aligned_cols=102 Identities=17% Similarity=0.244 Sum_probs=68.2
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhc---ccCCCC-cEEEeecCCCC
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIAS---VTNRKD-KFVGLHFFNPV 116 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~---~~~~p~-r~ig~Hf~~P~ 116 (160)
|.+|+|-.+++.|+|+||-=.|-- ...-.+++++-.-.++++|+ +++-++|.+.... ...|-. ++-..|+-.-|
T Consensus 127 ~~vttddreavedad~iitwlpkg-~~qpdiikkfiddipegaiv-thactipttkf~kifed~gredlnvtsyhpg~vp 204 (343)
T COG4074 127 IVVTTDDREAVEDADMIITWLPKG-GVQPDIIKKFIDDIPEGAIV-THACTIPTTKFKKIFEDMGREDLNVTSYHPGTVP 204 (343)
T ss_pred eEEecCcHhhhcCCCeEEEeccCC-CCCccHHHHHHhcCCCCceE-eeecccchHHHHHHHHHhCccccceeccCCCCCc
Confidence 555555557999999999766532 23446777777777787765 6778899886554 444422 55666665544
Q ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHHc
Q psy3942 117 PMMKLLEVIRTNDTSDATYNAVTEWGKSI 145 (160)
Q Consensus 117 ~~~~lVEvv~~~~T~~~~~~~~~~~~~~l 145 (160)
.+.--|=|.. .+.|+++++.+.++.+..
T Consensus 205 emkgqvyiae-gyaseeavn~lyelg~ka 232 (343)
T COG4074 205 EMKGQVYIAE-GYASEEAVNALYELGEKA 232 (343)
T ss_pred cccCcEEEec-ccccHHHHHHHHHHHHHh
Confidence 4444455554 567899999999988653
No 103
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=82.26 E-value=2.5 Score=36.04 Aligned_cols=112 Identities=11% Similarity=0.051 Sum_probs=70.6
Q ss_pred cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH--------HHhc-ccCCCCcEEE
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSIT--------EIAS-VTNRKDKFVG 109 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~--------~la~-~~~~p~r~ig 109 (160)
.+|+.++|+++++.++|+|+=|+|-.. =++++++|....+++.++.|.|-++... ++.. .+.. ++..
T Consensus 68 ~~i~at~dl~eal~~ADiIIlAVPs~~--i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~--~~~~ 143 (342)
T TIGR03376 68 ANLVAVPDLVEAAKGADILVFVIPHQF--LEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI--PCGV 143 (342)
T ss_pred CCeEEECCHHHHHhcCCEEEEECChHH--HHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC--CeEE
Confidence 468889999888999999999997544 5678888988888888888877666544 3322 2222 2221
Q ss_pred eecCCCCCC-----CceEEEecCCCCC----HHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942 110 LHFFNPVPM-----MKLLEVIRTNDTS----DATYNAVTEWGKSIGKTTIVCKDTPG 157 (160)
Q Consensus 110 ~Hf~~P~~~-----~~lVEvv~~~~T~----~~~~~~~~~~~~~lgk~pv~v~d~pG 157 (160)
..-|.+. ...-+++-+. .+ .+....+.+++..=-..+....|..|
T Consensus 144 --lsGP~~A~Eva~~~pt~~~ia~-~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G 197 (342)
T TIGR03376 144 --LSGANLANEVAKEKFSETTVGY-RDPADFDVDARVLKALFHRPYFRVNVVDDVAG 197 (342)
T ss_pred --eeCcchHHHHHcCCCceEEEEe-CCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence 2334331 1122333322 24 67777777777665555555567665
No 104
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=82.18 E-value=6.4 Score=33.09 Aligned_cols=89 Identities=10% Similarity=0.021 Sum_probs=54.3
Q ss_pred ecCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCc--EEeecCCCCCHHHH-hcccCCCC
Q psy3942 43 GSSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASA--ILASNTSSLSITEI-ASVTNRKD 105 (160)
Q Consensus 43 ~~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~--iiasnTS~l~i~~l-a~~~~~p~ 105 (160)
.+++++++++|||+||=+..= |.++=+++..+|.+.+++++ |++||--.+-..-+ ...++.|.
T Consensus 50 ~~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~~sg~p~ 129 (313)
T TIGR01756 50 VTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHAPKLSA 129 (313)
T ss_pred ecCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHcCCCCH
Confidence 356775689999999954321 23356778888999998877 34455333322222 23445565
Q ss_pred cEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 106 KFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 106 r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
+++|+ .|.-++...-..+++.+|-.|
T Consensus 130 ~vig~------------------gt~LDsaR~r~~la~~l~v~~ 155 (313)
T TIGR01756 130 ENFSS------------------LCMLDHNRAVSRIASKLKVPV 155 (313)
T ss_pred HHEEe------------------cccHHHHHHHHHHHHHhCcCh
Confidence 56664 566666555555667777654
No 105
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=80.76 E-value=14 Score=33.18 Aligned_cols=102 Identities=10% Similarity=0.107 Sum_probs=60.7
Q ss_pred eecCChhhhcC---CCcEEEEeccCChHHHHHHHHHHhhhCCCCc-EEeecCCCCC-HHHHhcccC-CCCcEEEeecCC-
Q psy3942 42 KGSSKVEDSVS---QSDLVIEAIVENMDIKHKLFTSVDKIAPASA-ILASNTSSLS-ITEIASVTN-RKDKFVGLHFFN- 114 (160)
Q Consensus 42 ~~~~~~~~al~---~adlViEav~E~l~~K~~v~~~l~~~~~~~~-iiasnTS~l~-i~~la~~~~-~p~r~ig~Hf~~- 114 (160)
....+.++.++ .+|+||=+++.+-.++.=+ ..|-..+.++. +|=..|++.. ..+++..+. +--+++++--..
T Consensus 58 ~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 58 YGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred ccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 34556655444 4999999999999887644 55555565554 4445555443 335555443 223444442221
Q ss_pred --CCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCe
Q psy3942 115 --PVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKT 148 (160)
Q Consensus 115 --P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~ 148 (160)
.+...+. ++.|. ++++++++..+++.++..
T Consensus 137 ~~gA~~G~~--im~GG--~~~a~~~v~pvL~~ia~k 168 (493)
T PLN02350 137 EEGARNGPS--LMPGG--SFEAYKNIEDILEKVAAQ 168 (493)
T ss_pred HHHhcCCCe--EEecC--CHHHHHHHHHHHHHHhhh
Confidence 1113332 45443 788999999999999964
No 106
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=80.00 E-value=20 Score=31.17 Aligned_cols=108 Identities=11% Similarity=0.150 Sum_probs=63.3
Q ss_pred cCceecCChhhhcCCCcEEEEeccCC--------hHHHHHHHHHHhhhCCCCcEEe-ecCCCCCH-HHHhcccC------
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVEN--------MDIKHKLFTSVDKIAPASAILA-SNTSSLSI-TEIASVTN------ 102 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~--------l~~K~~v~~~l~~~~~~~~iia-snTS~l~i-~~la~~~~------ 102 (160)
+++..++++ ++||+||=|+|-. +..=.++.+.+.+.+++++++. .+|..... .+++..+.
T Consensus 65 g~l~~~~~~----~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~ 140 (415)
T PRK11064 65 GYLRATTTP----EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDL 140 (415)
T ss_pred Cceeeeccc----ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCC
Confidence 567666654 4899999999974 3444566788888888887654 33333322 24433221
Q ss_pred -CC-----CcEEEeecCCCCCCC--ceE-------EEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942 103 -RK-----DKFVGLHFFNPVPMM--KLL-------EVIRTNDTSDATYNAVTEWGKSIGKTTIVCK 153 (160)
Q Consensus 103 -~p-----~r~ig~Hf~~P~~~~--~lV-------Evv~~~~T~~~~~~~~~~~~~~lgk~pv~v~ 153 (160)
.| ..-+.+ -++|-... ..+ =+|.| .+++..+++..+++.+++.++.+.
T Consensus 141 ~~~~~~g~~~~f~v-~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~ 203 (415)
T PRK11064 141 TFPQQAGEQADINI-AYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVT 203 (415)
T ss_pred cccccccCCCCeEE-EECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeC
Confidence 11 000111 14552221 111 24433 488999999999999998776654
No 107
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=79.19 E-value=6.6 Score=32.51 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=41.8
Q ss_pred cCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcEE--eecCCCCCHHHHhcccCC-CCc
Q psy3942 44 SSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAIL--ASNTSSLSITEIASVTNR-KDK 106 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~ii--asnTS~l~i~~la~~~~~-p~r 106 (160)
+.++ +++++||+||-+..- |.++=+++..++.+.++ ++++ +||-..+-..-+....+. |+|
T Consensus 60 ~~~~-~~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~-~~~vivvsNP~d~~~~~~~~~~g~p~~~ 137 (306)
T cd05291 60 AGDY-SDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGF-DGIFLVASNPVDVITYVVQKLSGLPKNR 137 (306)
T ss_pred cCCH-HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEecChHHHHHHHHHHHhCcCHHH
Confidence 4567 468999999999875 34455788888999876 5533 355444333333333444 367
Q ss_pred EEEe
Q psy3942 107 FVGL 110 (160)
Q Consensus 107 ~ig~ 110 (160)
++|+
T Consensus 138 v~g~ 141 (306)
T cd05291 138 VIGT 141 (306)
T ss_pred Eeec
Confidence 8876
No 108
>KOG0409|consensus
Probab=78.83 E-value=5.8 Score=33.60 Aligned_cols=103 Identities=22% Similarity=0.305 Sum_probs=68.9
Q ss_pred CChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhC---CCCc--EEeecCCCCCHHHHhcccCCCCcEEEeecCC-CCCC
Q psy3942 45 SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIA---PASA--ILASNTSSLSITEIASVTNRKDKFVGLHFFN-PVPM 118 (160)
Q Consensus 45 ~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~---~~~~--iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~-P~~~ 118 (160)
++-.+-.+++|+||=++|-...+|.-++...--+- +-.+ |-.|..+--...+|+....+. |..|.. |++-
T Consensus 83 ~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~----~~~~vDAPVSG 158 (327)
T KOG0409|consen 83 NSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK----GGRFVDAPVSG 158 (327)
T ss_pred CCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC----CCeEEeccccC
Confidence 44446678999999999999999987776433322 3233 333433444455888877544 333433 4432
Q ss_pred ------CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942 119 ------MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCK 153 (160)
Q Consensus 119 ------~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~ 153 (160)
.--+=|+.| .++++++++..+++.+||..+.+.
T Consensus 159 g~~~A~~G~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G 197 (327)
T KOG0409|consen 159 GVKGAEEGTLTIMAG--GDEALFEAASPVFKLMGKNVVFLG 197 (327)
T ss_pred CchhhhcCeEEEEec--CcHHHHHHHHHHHHHhcceEEEec
Confidence 223445555 899999999999999999988874
No 109
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=78.59 E-value=6.5 Score=32.94 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=38.4
Q ss_pred cCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcE--EeecCCCCCHHHHhcccCC-CCc
Q psy3942 44 SSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAI--LASNTSSLSITEIASVTNR-KDK 106 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~i--iasnTS~l~i~~la~~~~~-p~r 106 (160)
++++ +++++||+||=+... |..+=+++..++.+.++ +++ +.||-..+-...+....+. |.|
T Consensus 65 ~~~~-~~~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~-~~~vivvsNP~d~~~~~~~k~sg~p~~~ 142 (315)
T PRK00066 65 AGDY-SDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGF-DGIFLVASNPVDILTYATWKLSGFPKER 142 (315)
T ss_pred eCCH-HHhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEccCcHHHHHHHHHHHhCCCHHH
Confidence 4677 579999999976653 33344666777777765 553 3355443332233333333 457
Q ss_pred EEEe
Q psy3942 107 FVGL 110 (160)
Q Consensus 107 ~ig~ 110 (160)
++|+
T Consensus 143 viG~ 146 (315)
T PRK00066 143 VIGS 146 (315)
T ss_pred Eeec
Confidence 8776
No 110
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.54 E-value=7.7 Score=32.49 Aligned_cols=70 Identities=19% Similarity=0.282 Sum_probs=42.8
Q ss_pred CceecCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcE-EeecCCCCCHHHHhcccCC-
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAI-LASNTSSLSITEIASVTNR- 103 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~i-iasnTS~l~i~~la~~~~~- 103 (160)
.++.++|++ +++|||+||=+... |.++=+++..++.+.++...+ +.||-..+-..-+...++.
T Consensus 59 ~v~~~~dy~-~~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p 137 (312)
T cd05293 59 KIEADKDYS-VTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLP 137 (312)
T ss_pred EEEECCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCC
Confidence 566678995 69999999875432 122345677888888755543 3355444322233333344
Q ss_pred CCcEEEe
Q psy3942 104 KDKFVGL 110 (160)
Q Consensus 104 p~r~ig~ 110 (160)
|+|++|+
T Consensus 138 ~~~viG~ 144 (312)
T cd05293 138 KHRVIGS 144 (312)
T ss_pred HHHEEec
Confidence 4788887
No 111
>PLN00106 malate dehydrogenase
Probab=78.25 E-value=7.2 Score=32.98 Aligned_cols=66 Identities=24% Similarity=0.291 Sum_probs=40.3
Q ss_pred CChhhhcCCCcEEEEecc--------------CChHHHHHHHHHHhhhCCCCcEEe-ecCCCC---CHHH-HhcccC-CC
Q psy3942 45 SKVEDSVSQSDLVIEAIV--------------ENMDIKHKLFTSVDKIAPASAILA-SNTSSL---SITE-IASVTN-RK 104 (160)
Q Consensus 45 ~~~~~al~~adlViEav~--------------E~l~~K~~v~~~l~~~~~~~~iia-snTS~l---~i~~-la~~~~-~p 104 (160)
+|+.++++|+|+||=+.. .|.++=++++..+.+.+++-.+|. ||-... -++. +..... .|
T Consensus 78 ~d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~ 157 (323)
T PLN00106 78 DQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDP 157 (323)
T ss_pred CCHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCc
Confidence 344468999999997654 344566788888888884443333 554431 2332 333343 46
Q ss_pred CcEEEe
Q psy3942 105 DKFVGL 110 (160)
Q Consensus 105 ~r~ig~ 110 (160)
.|++|+
T Consensus 158 ~~viG~ 163 (323)
T PLN00106 158 KKLFGV 163 (323)
T ss_pred ceEEEE
Confidence 788887
No 112
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=77.71 E-value=6.1 Score=32.89 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=50.8
Q ss_pred cCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcEEe--ecCCCCCHHHHhcccCCC-Cc
Q psy3942 44 SSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAILA--SNTSSLSITEIASVTNRK-DK 106 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~iia--snTS~l~i~~la~~~~~p-~r 106 (160)
+.++ ++++|||+||=+..- |.++=+++..++.+.+ |++++. ||-..+-..-+....+.| +|
T Consensus 56 ~~~~-~~~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvsNP~d~~t~~~~~~sg~p~~~ 133 (299)
T TIGR01771 56 SGDY-SDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVATNPVDILTYVAWKLSGFPKNR 133 (299)
T ss_pred cCCH-HHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHhCCCHHH
Confidence 4567 589999999987654 4445667888888875 555443 554443222333334444 57
Q ss_pred EEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 107 FVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 107 ~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
++|+ .|..++...-..+++.+|..|
T Consensus 134 viG~------------------gt~LDs~R~~~~la~~l~v~~ 158 (299)
T TIGR01771 134 VIGS------------------GTVLDTARLRYLLAEKLGVDP 158 (299)
T ss_pred EEec------------------cchHHHHHHHHHHHHHhCcCc
Confidence 7776 455555454445555566443
No 113
>PLN02602 lactate dehydrogenase
Probab=76.93 E-value=11 Score=32.34 Aligned_cols=70 Identities=17% Similarity=0.258 Sum_probs=42.3
Q ss_pred CceecCChhhhcCCCcEEEEeccC-------C-------hHHHHHHHHHHhhhCCCCc-EEeecCCCCCHHHHhcccCC-
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVE-------N-------MDIKHKLFTSVDKIAPASA-ILASNTSSLSITEIASVTNR- 103 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E-------~-------l~~K~~v~~~l~~~~~~~~-iiasnTS~l~i~~la~~~~~- 103 (160)
.|+.+.+++ +++|||+||=+..- + .++=+++..++.+.+++.. |+.||-..+-..-+...++.
T Consensus 93 ~i~~~~dy~-~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~~k~sg~p 171 (350)
T PLN02602 93 KILASTDYA-VTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVAWKLSGFP 171 (350)
T ss_pred EEEeCCCHH-HhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHHhCCC
Confidence 344456885 69999999987542 1 2234577788888876554 33466554433333333443
Q ss_pred CCcEEEe
Q psy3942 104 KDKFVGL 110 (160)
Q Consensus 104 p~r~ig~ 110 (160)
|.|++|+
T Consensus 172 ~~rviG~ 178 (350)
T PLN02602 172 ANRVIGS 178 (350)
T ss_pred HHHEEee
Confidence 4678776
No 114
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=75.19 E-value=8.9 Score=31.87 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=40.2
Q ss_pred cCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcEEe-ecCCCCCHHHHhcccCC-CCcE
Q psy3942 44 SSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAILA-SNTSSLSITEIASVTNR-KDKF 107 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~iia-snTS~l~i~~la~~~~~-p~r~ 107 (160)
++++ +++++||+|+=|++- |..+=+++..+|.+.++...++. ||-..+-..-+...++. |.|+
T Consensus 59 ~~d~-~~l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~~sg~p~~~v 137 (308)
T cd05292 59 AGDY-ADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPPNRV 137 (308)
T ss_pred eCCH-HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHe
Confidence 5778 579999999999885 44456678888888875544333 33222211122222333 4577
Q ss_pred EEe
Q psy3942 108 VGL 110 (160)
Q Consensus 108 ig~ 110 (160)
+|+
T Consensus 138 iG~ 140 (308)
T cd05292 138 IGS 140 (308)
T ss_pred ecc
Confidence 776
No 115
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=74.37 E-value=4.8 Score=34.65 Aligned_cols=112 Identities=12% Similarity=0.032 Sum_probs=68.6
Q ss_pred cCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhh--hCCCCcEEeecCCCCC--------HHHHhcc-cCCCCcE
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDK--IAPASAILASNTSSLS--------ITEIASV-TNRKDKF 107 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~--~~~~~~iiasnTS~l~--------i~~la~~-~~~p~r~ 107 (160)
.+|..++|+.++++++|+|+=|||=.. =++++++|.. ..++++++.|-+=++. ++++... +. .++
T Consensus 79 ~ni~~tsdl~eav~~aDiIvlAVPsq~--l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~--~~~ 154 (365)
T PTZ00345 79 DNIVAVSDLKEAVEDADLLIFVIPHQF--LESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELG--IPC 154 (365)
T ss_pred CceEEecCHHHHHhcCCEEEEEcChHH--HHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhC--CCe
Confidence 578889999878999999999997443 6678888887 6777877776655544 4444432 22 222
Q ss_pred EEeecCCCCCC-----CceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942 108 VGLHFFNPVPM-----MKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG 157 (160)
Q Consensus 108 ig~Hf~~P~~~-----~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG 157 (160)
.. +.-|-+. ...-+++-+. .+.+....+..++..=...+....|..|
T Consensus 155 ~~--LsGPs~A~Eva~~~pt~~vias-~~~~~a~~~~~lf~~~~frvy~s~Dv~G 206 (365)
T PTZ00345 155 CA--LSGANVANDVAREEFSEATIGC-EDKDDALIWQRLFDRPYFKINCVPDVIG 206 (365)
T ss_pred EE--EECCCHHHHHHcCCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 21 3334331 1122333322 3677777777777655555555567655
No 116
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.34 E-value=14 Score=31.17 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=53.0
Q ss_pred cCceecCChhhhcCCCcEEEEeccC------C-hH-----HH--HHHHHHHhhhCCCCcEEeecCCCCCHHHHhc----c
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVE------N-MD-----IK--HKLFTSVDKIAPASAILASNTSSLSITEIAS----V 100 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E------~-l~-----~K--~~v~~~l~~~~~~~~iiasnTS~l~i~~la~----~ 100 (160)
.+++...++.+++++||+||-+..- + .+ .| +++..++.+.++|++++..-|. |+.-++. .
T Consensus 64 ~~~~~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN--PvD~~t~~~~k~ 141 (325)
T cd01336 64 KSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN--PANTNALILLKY 141 (325)
T ss_pred CCceecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC--cHHHHHHHHHHH
Confidence 4555567765689999999976532 1 12 22 7778888999877885554332 4444432 2
Q ss_pred c-CCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 101 T-NRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 101 ~-~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
+ ..|.+.+|+ .|.-++...-..+++.+|-.|
T Consensus 142 ~~~~~~~~ig~------------------gt~LDs~R~r~~la~~l~v~~ 173 (325)
T cd01336 142 APSIPKENFTA------------------LTRLDHNRAKSQIALKLGVPV 173 (325)
T ss_pred cCCCCHHHEEe------------------eehHHHHHHHHHHHHHhCcCh
Confidence 1 233333543 455555555555556677654
No 117
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=73.13 E-value=38 Score=27.40 Aligned_cols=110 Identities=9% Similarity=0.147 Sum_probs=60.7
Q ss_pred ecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC-HHHHhcccCCCCcEE-EeecCCCCCCC-
Q psy3942 43 GSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS-ITEIASVTNRKDKFV-GLHFFNPVPMM- 119 (160)
Q Consensus 43 ~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~-i~~la~~~~~p~r~i-g~Hf~~P~~~~- 119 (160)
.+++.++...++|+|+=|++-. .+ .+++++|....+++++|.+..=++. ...+...+. +++++ |+.++.-....
T Consensus 58 ~~~~~~~~~~~~d~vilavk~~-~~-~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~-~~~v~~g~~~~~~~~~~~ 134 (305)
T PRK12921 58 VITDPEELTGPFDLVILAVKAY-QL-DAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFG-RERVLGGVVFISAQLNGD 134 (305)
T ss_pred eecCHHHccCCCCEEEEEeccc-CH-HHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCC-cccEEEEEEEEEEEECCC
Confidence 3556654458999999999854 22 4577888888888887765444555 344555443 23444 33332211111
Q ss_pred ceEE------EecC--CCCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy3942 120 KLLE------VIRT--NDTSDATYNAVTEWGKSIGKTTIVCKDT 155 (160)
Q Consensus 120 ~lVE------vv~~--~~T~~~~~~~~~~~~~~lgk~pv~v~d~ 155 (160)
..|. +.-| +....+..+.+.+.+...|..+....|.
T Consensus 135 g~v~~~~~~~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di 178 (305)
T PRK12921 135 GVVVQRADHRLTFGEIPGQRSERTRAVRDALAGARLEVVLSENI 178 (305)
T ss_pred eEEEEcCCCcEEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHH
Confidence 1222 1222 2233455666777777777655554543
No 118
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=73.11 E-value=67 Score=28.44 Aligned_cols=114 Identities=13% Similarity=0.191 Sum_probs=73.9
Q ss_pred HhcCceecCChhhhcCCCcEEEEeccCCh--------HHHHHHHHHHhhhCCCCcEEe--ecCCCCCHHHHh-------c
Q psy3942 37 TLSRIKGSSKVEDSVSQSDLVIEAIVENM--------DIKHKLFTSVDKIAPASAILA--SNTSSLSITEIA-------S 99 (160)
Q Consensus 37 ~l~~i~~~~~~~~al~~adlViEav~E~l--------~~K~~v~~~l~~~~~~~~iia--snTS~l~i~~la-------~ 99 (160)
..++++.|+|.+ .++.||+.|=|||=.+ ..=.+.-+.+...+.++-++. |.|.-=+..+++ +
T Consensus 69 ~~g~lraTtd~~-~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~s 147 (436)
T COG0677 69 ESGKLRATTDPE-ELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERS 147 (436)
T ss_pred hcCCceEecChh-hcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcC
Confidence 347899999995 6899999999999644 344566777888887766444 333222233333 3
Q ss_pred ccCCCCcEEEeecCCCCCCCc---eEEEecCC----CCCHHHHHHHHHHHHHcCCeEEEec
Q psy3942 100 VTNRKDKFVGLHFFNPVPMMK---LLEVIRTN----DTSDATYNAVTEWGKSIGKTTIVCK 153 (160)
Q Consensus 100 ~~~~p~r~ig~Hf~~P~~~~~---lVEvv~~~----~T~~~~~~~~~~~~~~lgk~pv~v~ 153 (160)
++..++.|.-. |.|-+.+| +.|++..+ +.+|...+.+..|.+..=+..+.+.
T Consensus 148 gL~~~~Df~la--ysPERv~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vt 206 (436)
T COG0677 148 GLKFGEDFYLA--YSPERVLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVT 206 (436)
T ss_pred CCcccceeeEe--eCccccCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcC
Confidence 45555555444 34555444 56665443 4678889999999998655555543
No 119
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=72.68 E-value=19 Score=31.29 Aligned_cols=92 Identities=11% Similarity=-0.027 Sum_probs=54.1
Q ss_pred cCcee-cCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcEEe--ecCCCCCHHHHhccc
Q psy3942 39 SRIKG-SSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAILA--SNTSSLSITEIASVT 101 (160)
Q Consensus 39 ~~i~~-~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~iia--snTS~l~i~~la~~~ 101 (160)
.++++ +.++ ++++|||+||=+..= |..+=+++...|.++++|++++. ||--.+-..-+...+
T Consensus 106 ~~v~i~~~~y-~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~s 184 (387)
T TIGR01757 106 REVSIGIDPY-EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKNA 184 (387)
T ss_pred CceEEecCCH-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHHc
Confidence 45553 4566 589999999975421 23455677788888887888554 443332222222333
Q ss_pred C-CCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 102 N-RKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 102 ~-~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
. -|.|++|+ .|.-++...-..+++.+|..|
T Consensus 185 g~~~~rviG~------------------gT~LDsaR~r~~LA~~l~v~~ 215 (387)
T TIGR01757 185 PNIPRKNFHA------------------LTRLDENRAKCQLALKSGKFY 215 (387)
T ss_pred CCCcccEEEe------------------cchhHHHHHHHHHHHHHCcCh
Confidence 2 35677775 455555554555666677543
No 120
>COG2006 Uncharacterized conserved protein [Function unknown]
Probab=72.03 E-value=5.8 Score=33.08 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEecCcCcc
Q psy3942 127 TNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158 (160)
Q Consensus 127 ~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf 158 (160)
+..|.|+++..+.++++..|-.|++. |+|||
T Consensus 55 ~~tThPevv~Av~~~v~e~g~ep~vg-d~pg~ 85 (293)
T COG2006 55 PCTTHPEVVAAVAEVVKEAGGEPVVG-DSPGF 85 (293)
T ss_pred CCccCHHHHHHHHHHHHHhCCcceEe-cCCCC
Confidence 46899999999999999999999987 58987
No 121
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=71.90 E-value=9.7 Score=29.01 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=26.0
Q ss_pred hhcCCCcEEEEeccCChHHHHHHHHHHhhh
Q psy3942 49 DSVSQSDLVIEAIVENMDIKHKLFTSVDKI 78 (160)
Q Consensus 49 ~al~~adlViEav~E~l~~K~~v~~~l~~~ 78 (160)
+-++++|+||+| .++.+.|+.+...+.+.
T Consensus 84 ~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 84 GLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred HHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 457899999999 89999999999998887
No 122
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=71.71 E-value=8.4 Score=30.38 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=31.6
Q ss_pred hhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecC
Q psy3942 49 DSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89 (160)
Q Consensus 49 ~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnT 89 (160)
+.++++|+||+| .++.+.|+.+.....+....-.|.++..
T Consensus 113 ~~~~~~DvVI~a-~D~~~~r~~l~~~~~~~~~~p~I~~~~~ 152 (212)
T PRK08644 113 ELFKDCDIVVEA-FDNAETKAMLVETVLEHPGKKLVAASGM 152 (212)
T ss_pred HHHcCCCEEEEC-CCCHHHHHHHHHHHHHhCCCCEEEeehh
Confidence 457899999999 6999999999988888755556666543
No 123
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=69.51 E-value=17 Score=29.27 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=40.3
Q ss_pred eecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH-HHHhccc
Q psy3942 42 KGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI-TEIASVT 101 (160)
Q Consensus 42 ~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i-~~la~~~ 101 (160)
..+++.+ .+.++|+|+-|++-. .+ .+++++|....+++++|.+..-++.. ..+...+
T Consensus 56 ~~~~~~~-~~~~~d~vila~k~~-~~-~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 56 LAADDPA-ELGPQDLVILAVKAY-QL-PAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred cCCCChh-HcCCCCEEEEecccc-cH-HHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 3455664 358999999999843 34 67899999988888877766666764 4444444
No 124
>PRK05442 malate dehydrogenase; Provisional
Probab=69.02 E-value=11 Score=31.80 Aligned_cols=45 Identities=9% Similarity=0.006 Sum_probs=30.3
Q ss_pred cCChhhhcCCCcEEEEecc--------------CChHHHHHHHHHHhhhCCCCcEEeecC
Q psy3942 44 SSKVEDSVSQSDLVIEAIV--------------ENMDIKHKLFTSVDKIAPASAILASNT 89 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~--------------E~l~~K~~v~~~l~~~~~~~~iiasnT 89 (160)
+.++ ++++|||+||=+.. .|.++=+++..+|.+.+++++++..-|
T Consensus 72 ~~~y-~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 72 DDPN-VAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred cChH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4556 68999999986543 122345677788888887787655433
No 125
>PRK05086 malate dehydrogenase; Provisional
Probab=68.75 E-value=12 Score=31.31 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=30.3
Q ss_pred cCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcE-EeecCC
Q psy3942 44 SSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAI-LASNTS 90 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~i-iasnTS 90 (160)
.+++.++++++|+||=|..- |.++=+++...+.+.+++-.+ +.||-.
T Consensus 60 ~~d~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 60 GEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred CCCHHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 45644689999999988764 223556788888888544332 235544
No 126
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=68.09 E-value=13 Score=31.39 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=29.4
Q ss_pred cCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcEEee
Q psy3942 44 SSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAILAS 87 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~iias 87 (160)
+.++ ++++|||+||=+..- |.++=+++..+|.+.++|++++..
T Consensus 68 ~~~~-~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiiv 124 (323)
T cd00704 68 TDPE-EAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLV 124 (323)
T ss_pred cChH-HHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEE
Confidence 3445 689999999965422 334556777888888767775554
No 127
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=66.78 E-value=7.5 Score=32.82 Aligned_cols=45 Identities=11% Similarity=0.025 Sum_probs=31.3
Q ss_pred cCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcEEeecC
Q psy3942 44 SSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAILASNT 89 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~iiasnT 89 (160)
+.++ ++++|||+||=+..= |..+=+++..++.+.+++++++..-|
T Consensus 71 ~~~~-~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 71 TDPE-EAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred cChH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 4556 589999999855422 23345678888999988788666443
No 128
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=66.53 E-value=4.3 Score=30.29 Aligned_cols=105 Identities=18% Similarity=0.274 Sum_probs=63.4
Q ss_pred cCceecCChhhhcCCCcEEEEeccCChHHHHHHHH-HHhhhCCCCcEEe-ecCCCCCHH-HHhcccCCCCcEEEeecCC-
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFT-SVDKIAPASAILA-SNTSSLSIT-EIASVTNRKDKFVGLHFFN- 114 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~-~l~~~~~~~~iia-snTS~l~i~-~la~~~~~p~r~ig~Hf~~- 114 (160)
...+..++..++++++|+|+=|++.+-.++.=++. .+-..+.++.++. ++|++...+ ++++.+... |.||..
T Consensus 43 ~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~----g~~~vda 118 (163)
T PF03446_consen 43 AGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAK----GVRYVDA 118 (163)
T ss_dssp TTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHT----TEEEEEE
T ss_pred hhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhc----cceeeee
Confidence 35778889888889999999999999888755444 0445555555554 444443322 555554322 234433
Q ss_pred CCC-------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942 115 PVP-------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150 (160)
Q Consensus 115 P~~-------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv 150 (160)
|.. ...|.=++. -++++++++..+++.+|+..+
T Consensus 119 pV~Gg~~~a~~g~l~~~~g---G~~~~~~~~~~~l~~~~~~v~ 158 (163)
T PF03446_consen 119 PVSGGPPGAEEGTLTIMVG---GDEEAFERVRPLLEAMGKNVY 158 (163)
T ss_dssp EEESHHHHHHHTTEEEEEE---S-HHHHHHHHHHHHHHEEEEE
T ss_pred eeecccccccccceEEEcc---CCHHHHHHHHHHHHHHhCCce
Confidence 211 123333343 457899999999999999776
No 129
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=61.97 E-value=11 Score=30.91 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCC-----CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHH
Q psy3942 64 NMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNR-----KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAV 138 (160)
Q Consensus 64 ~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~-----p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~ 138 (160)
..+.|+++++.+-+.++.+..|....++.+..+.....++ .+-++-+ ||+..+ .+.++.++..
T Consensus 52 s~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~----pP~~~~--------~~~~~i~~~~ 119 (292)
T PRK03170 52 THEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVV----TPYYNK--------PTQEGLYQHF 119 (292)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEEC----CCcCCC--------CCHHHHHHHH
Confidence 4667888998888888777766666666666644443332 1222222 333222 3568888888
Q ss_pred HHHHHHcCCeEEEecCcCc
Q psy3942 139 TEWGKSIGKTTIVCKDTPG 157 (160)
Q Consensus 139 ~~~~~~lgk~pv~v~d~pG 157 (160)
.+++...+ .|+++.+.|+
T Consensus 120 ~~ia~~~~-~pv~lYn~P~ 137 (292)
T PRK03170 120 KAIAEATD-LPIILYNVPG 137 (292)
T ss_pred HHHHhcCC-CCEEEEECcc
Confidence 88888876 6888877775
No 130
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=61.83 E-value=72 Score=26.86 Aligned_cols=90 Identities=12% Similarity=0.007 Sum_probs=52.2
Q ss_pred cCceecCC-hhhhcCCCcEEEEeccC-------Ch-------HHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHh----c
Q psy3942 39 SRIKGSSK-VEDSVSQSDLVIEAIVE-------NM-------DIKHKLFTSVDKIAPASAILASNTSSLSITEIA----S 99 (160)
Q Consensus 39 ~~i~~~~~-~~~al~~adlViEav~E-------~l-------~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la----~ 99 (160)
..+..+++ + +++++||+||=+..- .+ ++=+++..+|.+.++|++++..-| -|+.-++ .
T Consensus 61 ~~~~~~~~~~-~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t~v~~~ 137 (324)
T TIGR01758 61 DGVVPTHDPA-VAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNALVLSN 137 (324)
T ss_pred CceeccCChH-HHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHHHHHHH
Confidence 34444434 6 689999999966532 11 234677788888877777666544 3443333 2
Q ss_pred cc-CCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 100 VT-NRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 100 ~~-~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
.+ ..|.|++|+ .|.-++...-..+++.+|-.|
T Consensus 138 ~sg~~~~~vig~------------------gt~LDs~R~r~~la~~l~v~~ 170 (324)
T TIGR01758 138 YAPSIPPKNFSA------------------LTRLDHNRALAQVAERAGVPV 170 (324)
T ss_pred HcCCCCcceEEE------------------eeehHHHHHHHHHHHHhCCCh
Confidence 23 234455554 455566554455556677654
No 131
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=61.79 E-value=9 Score=28.14 Aligned_cols=62 Identities=21% Similarity=0.346 Sum_probs=38.4
Q ss_pred CChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcEEe--ecCCCCCHHHHhc-ccC-CCCc
Q psy3942 45 SKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAILA--SNTSSLSITEIAS-VTN-RKDK 106 (160)
Q Consensus 45 ~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~iia--snTS~l~i~~la~-~~~-~p~r 106 (160)
.++ +++++||+||=+... |.++=+++..++.+.+ |++++. ||-.. .++.++. .++ .|+|
T Consensus 62 ~~~-~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNPvd-~~t~~~~~~s~~~~~k 138 (141)
T PF00056_consen 62 GDY-EALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNPVD-VMTYVAQKYSGFPPNK 138 (141)
T ss_dssp SSG-GGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSSHH-HHHHHHHHHHTSSGGG
T ss_pred ccc-cccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCcHH-HHHHHHHHhhCcCccc
Confidence 556 689999999977743 2345567788889998 555443 55433 2233332 233 3668
Q ss_pred EEE
Q psy3942 107 FVG 109 (160)
Q Consensus 107 ~ig 109 (160)
++|
T Consensus 139 viG 141 (141)
T PF00056_consen 139 VIG 141 (141)
T ss_dssp EEE
T ss_pred CcC
Confidence 776
No 132
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=59.69 E-value=13 Score=32.88 Aligned_cols=55 Identities=20% Similarity=0.376 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhhHHHHhcCceecCChhhhcCCCcEEEEec----------cCChHHHHHHHH
Q psy3942 10 EGEKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAI----------VENMDIKHKLFT 73 (160)
Q Consensus 10 ~a~~~i~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~al~~adlViEav----------~E~l~~K~~v~~ 73 (160)
...+.+....+++++..... -+++.++|.++|+.|||+|+-++ -|.+.+|.-++.
T Consensus 43 ~r~~~i~~~~~~~v~~~g~~---------~kv~~ttd~~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~~g 107 (442)
T COG1486 43 ERLKIIAILAKKLVEEAGAP---------VKVEATTDRREALEGADFVITQIRVGGLEAREKDERIPLKHGLYG 107 (442)
T ss_pred HHHHHHHHHHHHHHHhhCCC---------eEEEEecCHHHHhcCCCEEEEEEeeCCcccchhhhccchhhCccc
Confidence 33445555566666542111 46888999999999999999875 355556655444
No 133
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=59.09 E-value=11 Score=26.97 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=35.6
Q ss_pred CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHh
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIA 98 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la 98 (160)
.+..++++++.+..+|+||+.- . -..++..++.....+..+.+.|.+++-.++.
T Consensus 54 ~~~v~~~l~~~~~~~DVvIDfT--~---p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~ 107 (124)
T PF01113_consen 54 GVPVTDDLEELLEEADVVIDFT--N---PDAVYDNLEYALKHGVPLVIGTTGFSDEQID 107 (124)
T ss_dssp SSBEBS-HHHHTTH-SEEEEES------HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHH
T ss_pred ccccchhHHHhcccCCEEEEcC--C---hHHhHHHHHHHHhCCCCEEEECCCCCHHHHH
Confidence 4556788988888899999987 3 3445555555556688999999998765544
No 134
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=58.97 E-value=18 Score=30.58 Aligned_cols=65 Identities=15% Similarity=0.297 Sum_probs=41.1
Q ss_pred CChhhhcCCCcEEEEec--------------cCChHHHHHHHHHHhhhCCCCc-EEeecCCCCCHHHHhcccCC-CCcEE
Q psy3942 45 SKVEDSVSQSDLVIEAI--------------VENMDIKHKLFTSVDKIAPASA-ILASNTSSLSITEIASVTNR-KDKFV 108 (160)
Q Consensus 45 ~~~~~al~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~-iiasnTS~l~i~~la~~~~~-p~r~i 108 (160)
.++ ++++++|+|+=+. -.|..+.+++-+++.+.+++.. +++||-..+-.--....+++ ++|++
T Consensus 62 ~~y-~~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~~k~sg~p~~rvi 140 (313)
T COG0039 62 GDY-EDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIAMKFSGFPKNRVI 140 (313)
T ss_pred CCh-hhhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHHHHhcCCCcccee
Confidence 448 5799999999777 2355688889999999987444 34466544333333333333 45666
Q ss_pred Ee
Q psy3942 109 GL 110 (160)
Q Consensus 109 g~ 110 (160)
|+
T Consensus 141 g~ 142 (313)
T COG0039 141 GS 142 (313)
T ss_pred cc
Confidence 54
No 135
>PRK08605 D-lactate dehydrogenase; Validated
Probab=58.89 E-value=14 Score=31.12 Aligned_cols=61 Identities=10% Similarity=0.081 Sum_probs=41.2
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH--HHHhccc
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI--TEIASVT 101 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i--~~la~~~ 101 (160)
+...+++++.++++|+|+-++|-.-+.+.-+=.++-+.++++++|...+-+..+ .+|...+
T Consensus 188 ~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL 250 (332)
T PRK08605 188 VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDAL 250 (332)
T ss_pred ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHH
Confidence 455668888899999999999998887752223445567888876655544433 3555544
No 136
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=56.02 E-value=21 Score=29.90 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=45.0
Q ss_pred CChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecC--CCCCHHHHhcccC
Q psy3942 45 SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT--SSLSITEIASVTN 102 (160)
Q Consensus 45 ~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnT--S~l~i~~la~~~~ 102 (160)
.++++.+++||+|+-++|-+-+.+.-+-++.=+.++++++|..-. .-+.-.+|...+.
T Consensus 182 ~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 182 EELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred ccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence 467778999999999999999999888877777788998776433 4455557766664
No 137
>PLN02858 fructose-bisphosphate aldolase
Probab=55.94 E-value=41 Score=34.04 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=65.4
Q ss_pred ecCChhhhcCCCcEEEEeccCChHHHHHHHHH--HhhhCCCCcEEe-ecCCCCCH-HHHhcccCCCCcEEEeecCC-CCC
Q psy3942 43 GSSKVEDSVSQSDLVIEAIVENMDIKHKLFTS--VDKIAPASAILA-SNTSSLSI-TEIASVTNRKDKFVGLHFFN-PVP 117 (160)
Q Consensus 43 ~~~~~~~al~~adlViEav~E~l~~K~~v~~~--l~~~~~~~~iia-snTS~l~i-~~la~~~~~p~r~ig~Hf~~-P~~ 117 (160)
..++..+++++||+|+=|++..-+++.=++.. +-..+.++.++. .+|.+... .+++..+.. .--|.||.. |+.
T Consensus 370 ~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~--~g~g~~~lDAPVs 447 (1378)
T PLN02858 370 AGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVS 447 (1378)
T ss_pred ecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCC
Confidence 45667677899999999999888877655432 223344555443 43333322 256555432 013555544 322
Q ss_pred -------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCcCc
Q psy3942 118 -------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTPG 157 (160)
Q Consensus 118 -------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pG 157 (160)
...|.=++.| +++.+++++.+++.+|+..+.+...+|
T Consensus 448 Gg~~~A~~G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G 491 (1378)
T PLN02858 448 GGVKRAAMGTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCG 491 (1378)
T ss_pred CChhhhhcCCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCC
Confidence 2223334444 578999999999999997766533334
No 138
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=55.81 E-value=31 Score=29.05 Aligned_cols=44 Identities=9% Similarity=0.006 Sum_probs=30.5
Q ss_pred cCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcEEeec
Q psy3942 44 SSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAILASN 88 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~iiasn 88 (160)
+.++ ++++|||+||=+..- |.++=+++..+|.+.++|++++..-
T Consensus 70 ~~~~-~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv 127 (322)
T cd01338 70 DDPN-VAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVV 127 (322)
T ss_pred cCcH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 4556 689999999976532 2334567888888888767755543
No 139
>PLN02858 fructose-bisphosphate aldolase
Probab=55.68 E-value=44 Score=33.87 Aligned_cols=107 Identities=7% Similarity=0.074 Sum_probs=65.4
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHH--HHHhhhCCCCcEEe-ecCCCCCHH-HHhcccCCCCcEEEeecCC-C
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLF--TSVDKIAPASAILA-SNTSSLSIT-EIASVTNRKDKFVGLHFFN-P 115 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~--~~l~~~~~~~~iia-snTS~l~i~-~la~~~~~p~r~ig~Hf~~-P 115 (160)
.+..++..++.++||+||=|++.+-.++.=+| ..+-..+.++.++. .+|.+...+ +++..+..... +.+|.. |
T Consensus 48 a~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~--~~~~lDaP 125 (1378)
T PLN02858 48 GHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKE--QIFLVDAY 125 (1378)
T ss_pred CeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCC--ceEEEEcc
Confidence 34566777778899999999999988885544 23444445555443 444433333 66655532210 034433 3
Q ss_pred CC-------CCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 116 VP-------MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 116 ~~-------~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
+. ...|.=++.| ++++++++..+++.+|+..+.+
T Consensus 126 VsGg~~~A~~G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~ 166 (1378)
T PLN02858 126 VSKGMSDLLNGKLMIIASG---RSDAITRAQPFLSAMCQKLYTF 166 (1378)
T ss_pred CcCCHHHHhcCCeEEEEcC---CHHHHHHHHHHHHHhcCceEEe
Confidence 22 2234444433 6788999999999999987764
No 140
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=55.61 E-value=1.4e+02 Score=26.05 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=61.9
Q ss_pred hcCceecCChhhhcCCCcEEEEeccCCh--------HHHHHHHHHHhhhCCCCc-EEeecCCCCCHHH-Hhcc-cCC---
Q psy3942 38 LSRIKGSSKVEDSVSQSDLVIEAIVENM--------DIKHKLFTSVDKIAPASA-ILASNTSSLSITE-IASV-TNR--- 103 (160)
Q Consensus 38 l~~i~~~~~~~~al~~adlViEav~E~l--------~~K~~v~~~l~~~~~~~~-iiasnTS~l~i~~-la~~-~~~--- 103 (160)
.+++.++++.+ ++++||++|=|||-.. +-=....+.|.+.++++. +|-.+|.....++ ++.. +.+
T Consensus 62 ~g~l~~t~~~~-~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g 140 (425)
T PRK15182 62 ARYLKFTSEIE-KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSG 140 (425)
T ss_pred hCCeeEEeCHH-HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccC
Confidence 35788899984 7899999999999663 222222356666666555 4445555544443 3211 111
Q ss_pred ---CCcEEEeecCCCCCCCc---------eEEEecCCCCCHHHHHHHHHHHHHcC-CeEEEec
Q psy3942 104 ---KDKFVGLHFFNPVPMMK---------LLEVIRTNDTSDATYNAVTEWGKSIG-KTTIVCK 153 (160)
Q Consensus 104 ---p~r~ig~Hf~~P~~~~~---------lVEvv~~~~T~~~~~~~~~~~~~~lg-k~pv~v~ 153 (160)
-+.+.-. |+|.+..+ +-=||.|. +++..+.+..+++.+. ..++.+.
T Consensus 141 ~~~~~~~~~~--~~PE~v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~ 199 (425)
T PRK15182 141 MTFNQDFYVG--YSPERINPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAE 199 (425)
T ss_pred CCcCCCeeEe--eCCCcCCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEec
Confidence 1111111 23333222 12255553 4788889999999875 3355543
No 141
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=55.07 E-value=30 Score=26.51 Aligned_cols=62 Identities=15% Similarity=0.249 Sum_probs=40.0
Q ss_pred HHHHhcCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCC---CCHHHHhcc
Q psy3942 34 IDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSS---LSITEIASV 100 (160)
Q Consensus 34 ~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~---l~i~~la~~ 100 (160)
.++.++-++.. ++++++..+|++|=|....--+..+-|++ +++++|+++-++. +.+..|.+.
T Consensus 60 lqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~e~~~~----mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 60 LQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITGEHFRQ----MKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp HHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-HHHHHH----S-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred HHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCHHHHHH----hcCCeEEeccCcCceeEeecccccc
Confidence 66777888765 56689999999997655543356666655 6889999977754 566677655
No 142
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=54.01 E-value=47 Score=27.73 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=51.2
Q ss_pred cCChhhhcCCCcEEEEeccC------C----------hHHHHHHHHHHhhhCCCCc-EEeecCCCCCHHHHhcccCC-CC
Q psy3942 44 SSKVEDSVSQSDLVIEAIVE------N----------MDIKHKLFTSVDKIAPASA-ILASNTSSLSITEIASVTNR-KD 105 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~E------~----------l~~K~~v~~~l~~~~~~~~-iiasnTS~l~i~~la~~~~~-p~ 105 (160)
+.++ ++++|||+||=+..- + .++=+++..+|.+.++... |++||-...-..-....++. |.
T Consensus 60 ~~~y-~~~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~~k~sg~p~~ 138 (307)
T cd05290 60 AGDY-DDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFDYPAN 138 (307)
T ss_pred ECCH-HHhCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHHHHHhCcChh
Confidence 5678 579999999977642 1 2345667777888874443 33355433322222233333 56
Q ss_pred cEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 106 KFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 106 r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
|++|+ .|.-++...-..+++.+|-.|
T Consensus 139 rviG~------------------gt~LDs~R~~~~la~~l~v~~ 164 (307)
T cd05290 139 KVIGT------------------GTMLDTARLRRIVADKYGVDP 164 (307)
T ss_pred heecc------------------cchHHHHHHHHHHHHHhCCCc
Confidence 77775 566666555555666677554
No 143
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=52.84 E-value=1.3e+02 Score=24.73 Aligned_cols=111 Identities=12% Similarity=0.114 Sum_probs=64.7
Q ss_pred eecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHH-HhcccCCCCcEEEe------ecCC
Q psy3942 42 KGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITE-IASVTNRKDKFVGL------HFFN 114 (160)
Q Consensus 42 ~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~-la~~~~~p~r~ig~------Hf~~ 114 (160)
...++. +++..+|+||=|++-.- + ++++..+...+.+++++.+-.=++...+ +...+. ++++++. +...
T Consensus 62 ~~~~~~-~~~~~~D~vilavK~~~-~-~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~ 137 (313)
T PRK06249 62 QAYRSA-EDMPPCDWVLVGLKTTA-N-ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVG 137 (313)
T ss_pred eEEcch-hhcCCCCEEEEEecCCC-h-HhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCC
Confidence 334455 35688999999987442 2 4688899999999988777666776654 444443 3465542 2223
Q ss_pred CCCCC--ceEEEecCC--CCC-----HHHHHHHHHHHHHcCCeEEEecCcC
Q psy3942 115 PVPMM--KLLEVIRTN--DTS-----DATYNAVTEWGKSIGKTTIVCKDTP 156 (160)
Q Consensus 115 P~~~~--~lVEvv~~~--~T~-----~~~~~~~~~~~~~lgk~pv~v~d~p 156 (160)
|.... ..=++.-|. ..+ .+..+.+.++++..|..+.+..|..
T Consensus 138 pg~v~~~~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~ 188 (313)
T PRK06249 138 PGVIHHLAYGRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLA 188 (313)
T ss_pred CeEEEECCCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHH
Confidence 32100 000111121 112 4566777888888888776666643
No 144
>PTZ00325 malate dehydrogenase; Provisional
Probab=52.69 E-value=37 Score=28.63 Aligned_cols=63 Identities=22% Similarity=0.227 Sum_probs=36.3
Q ss_pred hhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHh-----cccC-CCCc
Q psy3942 47 VEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAILASNTSSLSITEIA-----SVTN-RKDK 106 (160)
Q Consensus 47 ~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la-----~~~~-~p~r 106 (160)
+ ++++|+|+||=+..- |.++=++++..+.+..++..++.+.-..-.++.++ ..+. .|+|
T Consensus 71 ~-~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~ 149 (321)
T PTZ00325 71 E-KALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRK 149 (321)
T ss_pred H-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhh
Confidence 5 589999999966532 22244567777888755544444433333344444 2232 4667
Q ss_pred EEEe
Q psy3942 107 FVGL 110 (160)
Q Consensus 107 ~ig~ 110 (160)
++|+
T Consensus 150 viG~ 153 (321)
T PTZ00325 150 LFGV 153 (321)
T ss_pred eeec
Confidence 7775
No 145
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=52.57 E-value=14 Score=32.79 Aligned_cols=72 Identities=7% Similarity=0.098 Sum_probs=38.6
Q ss_pred cCceecCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCC-cEE--eecCCCCCHHHHhccc
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPAS-AIL--ASNTSSLSITEIASVT 101 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~-~ii--asnTS~l~i~~la~~~ 101 (160)
..++++++..++++|||+||=+..= |..+=+++-..|.+.++++ .|| +||--.+-..-+...+
T Consensus 185 ~~v~i~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~a 264 (452)
T cd05295 185 RGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYA 264 (452)
T ss_pred CCcEEEECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHc
Confidence 3455544444689999999865431 2234456677788888733 333 3443332222222223
Q ss_pred -CC-CCcEEEe
Q psy3942 102 -NR-KDKFVGL 110 (160)
Q Consensus 102 -~~-p~r~ig~ 110 (160)
+. |+||+|+
T Consensus 265 pgiP~~rVig~ 275 (452)
T cd05295 265 PSIPRKNIIAV 275 (452)
T ss_pred CCCCHHHEEEe
Confidence 33 3677776
No 146
>KOG2711|consensus
Probab=50.72 E-value=29 Score=30.00 Aligned_cols=53 Identities=6% Similarity=0.171 Sum_probs=44.6
Q ss_pred CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCH
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSI 94 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i 94 (160)
++..++|+.+++.|||++|=++|-.. =.+++.+|....++++.--|-+=++..
T Consensus 92 NvvAv~dl~ea~~dADilvf~vPhQf--~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 92 NVVAVPDLVEAAKDADILVFVVPHQF--IPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred CeEecchHHHHhccCCEEEEeCChhh--HHHHHHHHhcccCCCCeEEEeecceec
Confidence 46668899889999999999999765 457999999999999998887766654
No 147
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=49.64 E-value=49 Score=27.23 Aligned_cols=84 Identities=11% Similarity=0.068 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCC----CcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHH
Q psy3942 64 NMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRK----DKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVT 139 (160)
Q Consensus 64 ~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p----~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~ 139 (160)
+.+.|+++++..-+.+.....+..+.++.+..+-....++- -.-+-+ . ||+..+ .|.++.++...
T Consensus 52 t~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v--~-~P~y~~--------~~~~~i~~yf~ 120 (290)
T TIGR00683 52 STEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSA--V-TPFYYK--------FSFPEIKHYYD 120 (290)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEE--e-CCcCCC--------CCHHHHHHHHH
Confidence 56788899988888887777665565555555443332221 122222 2 223222 25678888888
Q ss_pred HHHHHcCCeEEEecCcCcc
Q psy3942 140 EWGKSIGKTTIVCKDTPGF 158 (160)
Q Consensus 140 ~~~~~lgk~pv~v~d~pGf 158 (160)
+++......|+++.+.|+.
T Consensus 121 ~v~~~~~~lpv~lYn~P~~ 139 (290)
T TIGR00683 121 TIIAETGGLNMIVYSIPFL 139 (290)
T ss_pred HHHhhCCCCCEEEEeCccc
Confidence 8887776789999887753
No 148
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=48.93 E-value=27 Score=28.81 Aligned_cols=83 Identities=16% Similarity=0.163 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCC-----CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHH
Q psy3942 64 NMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNR-----KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAV 138 (160)
Q Consensus 64 ~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~-----p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~ 138 (160)
..+.++++++..-+.++....+..++++.+..+-....++ .+-++. -||+..+ .+.++.++..
T Consensus 51 s~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v----~pP~y~~--------~~~~~l~~~f 118 (294)
T TIGR02313 51 TLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMV----IVPYYNK--------PNQEALYDHF 118 (294)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEE----cCccCCC--------CCHHHHHHHH
Confidence 4567888888877777777766666666666543332221 122222 2333222 2567888888
Q ss_pred HHHHHHcCCeEEEecCcCcc
Q psy3942 139 TEWGKSIGKTTIVCKDTPGF 158 (160)
Q Consensus 139 ~~~~~~lgk~pv~v~d~pGf 158 (160)
.+++......||++.+.|++
T Consensus 119 ~~ia~a~~~lpv~iYn~P~~ 138 (294)
T TIGR02313 119 AEVADAVPDFPIIIYNIPGR 138 (294)
T ss_pred HHHHHhccCCCEEEEeCchh
Confidence 88888874569998887764
No 149
>PRK06436 glycerate dehydrogenase; Provisional
Probab=48.57 E-value=1.4e+02 Score=24.90 Aligned_cols=95 Identities=9% Similarity=0.106 Sum_probs=59.4
Q ss_pred cCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecC--CCCCHHHHhcccCC-CCcEEEeecCC--CC--
Q psy3942 44 SSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT--SSLSITEIASVTNR-KDKFVGLHFFN--PV-- 116 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnT--S~l~i~~la~~~~~-p~r~ig~Hf~~--P~-- 116 (160)
..++++.+++||+|+-++|-+-+.+.-+-++.=+.++++++|..-+ +-+.-.+|...+.. +-.-.++=-|. |.
T Consensus 164 ~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~ 243 (303)
T PRK06436 164 YMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIIT 243 (303)
T ss_pred cCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCc
Confidence 3467777899999999999999988777666666678888776333 34444567666642 23334442222 32
Q ss_pred -CCCceEEEecC-C-CCCHHHHHHH
Q psy3942 117 -PMMKLLEVIRT-N-DTSDATYNAV 138 (160)
Q Consensus 117 -~~~~lVEvv~~-~-~T~~~~~~~~ 138 (160)
+..|-|=+.+| . .++++..++.
T Consensus 244 ~~~~~nviiTPHi~g~~t~e~~~~~ 268 (303)
T PRK06436 244 ETNPDNVILSPHVAGGMSGEIMQPA 268 (303)
T ss_pred cCCCCCEEECCccccccCHHHHHHH
Confidence 23455656666 2 3566655444
No 150
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=48.39 E-value=8 Score=30.78 Aligned_cols=83 Identities=14% Similarity=0.236 Sum_probs=45.1
Q ss_pred HHHHhhhCCCCcEEeecCCC----CCHHHHhcccCCCCcEEEeec----CCCC-----CCCceEEEecCCCCCHHHHHHH
Q psy3942 72 FTSVDKIAPASAILASNTSS----LSITEIASVTNRKDKFVGLHF----FNPV-----PMMKLLEVIRTNDTSDATYNAV 138 (160)
Q Consensus 72 ~~~l~~~~~~~~iiasnTS~----l~i~~la~~~~~p~r~ig~Hf----~~P~-----~~~~lVEvv~~~~T~~~~~~~~ 138 (160)
|.+|=--+.|++||=+.+.. +=..++.+.+..+.+|+|+=- .|+. ++.+-++++.|..++++++.++
T Consensus 24 ~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v 103 (206)
T PF04989_consen 24 YQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQV 103 (206)
T ss_dssp HHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTS
T ss_pred HHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHH
Confidence 33333445789998776643 333456666677889999966 2322 1237899999999999999999
Q ss_pred HHHHHHcCCeEEEecCc
Q psy3942 139 TEWGKSIGKTTIVCKDT 155 (160)
Q Consensus 139 ~~~~~~lgk~pv~v~d~ 155 (160)
..+.+. +...+++-|+
T Consensus 104 ~~~~~~-~~~vlVilDs 119 (206)
T PF04989_consen 104 RELASP-PHPVLVILDS 119 (206)
T ss_dssp GSS-----SSEEEEESS
T ss_pred HHhhcc-CCceEEEECC
Confidence 887665 4434444453
No 151
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=46.99 E-value=74 Score=26.23 Aligned_cols=51 Identities=8% Similarity=0.146 Sum_probs=35.2
Q ss_pred CceecCChhhhc-CCCcEEEEeccCChHHHHHHHHHHhh-hCCCCcEEeecCCCC
Q psy3942 40 RIKGSSKVEDSV-SQSDLVIEAIVENMDIKHKLFTSVDK-IAPASAILASNTSSL 92 (160)
Q Consensus 40 ~i~~~~~~~~al-~~adlViEav~E~l~~K~~v~~~l~~-~~~~~~iiasnTS~l 92 (160)
.++.++++.+++ .++|+||=|++-.- =.++++++.. ..++++++.+-+.++
T Consensus 57 ~i~~~~~~~~~~~~~~Dliiiavks~~--~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 57 NISVKSAIDEVLSDNATCIILAVPTQQ--LRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred CeEEeCCHHHHHhCCCCEEEEEeCHHH--HHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 456777886666 58999999986442 3357777776 777887665555555
No 152
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=46.77 E-value=76 Score=28.52 Aligned_cols=62 Identities=3% Similarity=0.040 Sum_probs=42.9
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecC--CCCCHHHHhcccC
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT--SSLSITEIASVTN 102 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnT--S~l~i~~la~~~~ 102 (160)
+.+.+++++.+++||+|+-++|-+-+.+.-+=++.=+.++++++|...+ .-+.-.+|...+.
T Consensus 181 ~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 244 (525)
T TIGR01327 181 VELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALE 244 (525)
T ss_pred CEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHH
Confidence 4455678888899999999999888877665444455678888665433 3344456666664
No 153
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=46.66 E-value=50 Score=29.30 Aligned_cols=47 Identities=9% Similarity=0.117 Sum_probs=31.1
Q ss_pred cCce-ecCChhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcEEe
Q psy3942 39 SRIK-GSSKVEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAILA 86 (160)
Q Consensus 39 ~~i~-~~~~~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~iia 86 (160)
.+++ .+.++ ++++|||+||=+..= |.++=+++...|.++..|++++.
T Consensus 162 ~~v~i~~~~y-e~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivI 223 (444)
T PLN00112 162 REVSIGIDPY-EVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVI 223 (444)
T ss_pred CceEEecCCH-HHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 3555 34677 589999999966532 23345677777888666777554
No 154
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=45.72 E-value=31 Score=31.02 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=38.2
Q ss_pred CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEee
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILAS 87 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iias 87 (160)
-+++ .+++++++.||+|+=.+|.. . ...++.++...+++++.|.=
T Consensus 85 GF~v-~~~~Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~f 129 (487)
T PRK05225 85 GFKV-GTYEELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGY 129 (487)
T ss_pred CCcc-CCHHHHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEe
Confidence 3444 45778999999999999999 4 99999999999999998874
No 155
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=44.77 E-value=99 Score=25.00 Aligned_cols=81 Identities=12% Similarity=0.172 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCC-----CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHH
Q psy3942 64 NMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNR-----KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAV 138 (160)
Q Consensus 64 ~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~-----p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~ 138 (160)
+.+.++++++..-+.++....|....++.+..+.....++ .+-++-+ ||+.. +.+.++.++..
T Consensus 51 t~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~----~P~~~--------~~~~~~l~~~~ 118 (284)
T cd00950 51 SDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVV----TPYYN--------KPSQEGLYAHF 118 (284)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEc----ccccC--------CCCHHHHHHHH
Confidence 5677888998888888877766666666555543332221 2233333 22221 24678888888
Q ss_pred HHHHHHcCCeEEEecCcCc
Q psy3942 139 TEWGKSIGKTTIVCKDTPG 157 (160)
Q Consensus 139 ~~~~~~lgk~pv~v~d~pG 157 (160)
.++++..+ .|+++.+.|+
T Consensus 119 ~~ia~~~~-~pi~lYn~P~ 136 (284)
T cd00950 119 KAIAEATD-LPVILYNVPG 136 (284)
T ss_pred HHHHhcCC-CCEEEEEChh
Confidence 88888876 4888877775
No 156
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=43.51 E-value=52 Score=22.75 Aligned_cols=41 Identities=10% Similarity=0.203 Sum_probs=24.0
Q ss_pred HHHhcCceecCChhhhcC--CCcEEEEeccCChHHHHHHHHHHh
Q psy3942 35 DLTLSRIKGSSKVEDSVS--QSDLVIEAIVENMDIKHKLFTSVD 76 (160)
Q Consensus 35 ~~~l~~i~~~~~~~~al~--~adlViEav~E~l~~K~~v~~~l~ 76 (160)
.........++++++.+. +.|+|||| .-.-.++.-+..-|+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~dvvVE~-t~~~~~~~~~~~~L~ 81 (117)
T PF03447_consen 39 AASFPDEAFTTDLEELIDDPDIDVVVEC-TSSEAVAEYYEKALE 81 (117)
T ss_dssp HHHHTHSCEESSHHHHHTHTT-SEEEE--SSCHHHHHHHHHHHH
T ss_pred hhhcccccccCCHHHHhcCcCCCEEEEC-CCchHHHHHHHHHHH
Confidence 344556677888866666 89999999 444445443333333
No 157
>PF13822 ACC_epsilon: Acyl-CoA carboxylase epsilon subunit
Probab=42.85 E-value=39 Score=21.47 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=22.3
Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy3942 119 MKLLEVIRTNDTSDATYNAVTEWGKSIGK 147 (160)
Q Consensus 119 ~~lVEvv~~~~T~~~~~~~~~~~~~~lgk 147 (160)
.|++.|++|.-|++|+.+-+.-|+...+.
T Consensus 1 ~p~~rVvrGnPt~eElAAL~aVlaa~~a~ 29 (62)
T PF13822_consen 1 RPLIRVVRGNPTDEELAALTAVLAARAAA 29 (62)
T ss_pred CCceEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence 36899999999999997766666555443
No 158
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=42.65 E-value=1.6e+02 Score=24.45 Aligned_cols=82 Identities=10% Similarity=0.175 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHhhhCCCCcEEeecCCCCCHH------HHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHH
Q psy3942 63 ENMDIKHKLFTSVDKIAPASAILASNTSSLSIT------EIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYN 136 (160)
Q Consensus 63 E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~------~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~ 136 (160)
=..+.|+++++..-+.+.....+-..+++.+.. +.+..++--.-++..+||++ .+.++..+
T Consensus 54 Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k-------------~~~~gl~~ 120 (299)
T COG0329 54 LTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNK-------------PSQEGLYA 120 (299)
T ss_pred cCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcC-------------CChHHHHH
Confidence 356779999999999887766444444444443 23333332223333344444 34678888
Q ss_pred HHHHHHHHcCCeEEEecCcCcc
Q psy3942 137 AVTEWGKSIGKTTIVCKDTPGF 158 (160)
Q Consensus 137 ~~~~~~~~lgk~pv~v~d~pGf 158 (160)
...+.+... ..|+++.+.|+.
T Consensus 121 hf~~ia~a~-~lPvilYN~P~~ 141 (299)
T COG0329 121 HFKAIAEAV-DLPVILYNIPSR 141 (299)
T ss_pred HHHHHHHhc-CCCEEEEeCccc
Confidence 888888888 779998888864
No 159
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=41.84 E-value=26 Score=20.93 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCeE
Q psy3942 128 NDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 128 ~~T~~~~~~~~~~~~~~lgk~p 149 (160)
+..++++.+++.+.++++|-.|
T Consensus 24 ~~vs~~tr~rI~~~a~~lgY~p 45 (46)
T PF00356_consen 24 PRVSEETRERILEAAEELGYRP 45 (46)
T ss_dssp SSSTHHHHHHHHHHHHHHTB-S
T ss_pred CCCCHHHHHHHHHHHHHHCCCC
Confidence 4678999999999999999766
No 160
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=41.73 E-value=75 Score=26.67 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=36.7
Q ss_pred hhhhcCCCcEEEEecc--------------CChHHHHHHHHHHhhhCCCCcEEe--ecCCCC---CHHHHhc-ccCC-CC
Q psy3942 47 VEDSVSQSDLVIEAIV--------------ENMDIKHKLFTSVDKIAPASAILA--SNTSSL---SITEIAS-VTNR-KD 105 (160)
Q Consensus 47 ~~~al~~adlViEav~--------------E~l~~K~~v~~~l~~~~~~~~iia--snTS~l---~i~~la~-~~~~-p~ 105 (160)
+ ++++|||+||=+.. .|..+=+++..+|.+.+ |++++. ||--.. -++..+. .++. |+
T Consensus 62 ~-~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~ 139 (312)
T TIGR01772 62 E-NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVNSTVPIAAEVLKKKGVYDPN 139 (312)
T ss_pred H-HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchhhHHHHHHHHHHHhcCCChH
Confidence 5 68999999996653 23445566677777775 555443 555443 1344333 3333 34
Q ss_pred cEEEe
Q psy3942 106 KFVGL 110 (160)
Q Consensus 106 r~ig~ 110 (160)
||+|+
T Consensus 140 rViG~ 144 (312)
T TIGR01772 140 KLFGV 144 (312)
T ss_pred HEEee
Confidence 77776
No 161
>PRK07574 formate dehydrogenase; Provisional
Probab=39.67 E-value=73 Score=27.65 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=44.9
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCC--CCCHHHHhcccC
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTS--SLSITEIASVTN 102 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS--~l~i~~la~~~~ 102 (160)
+++..++++.+++||+|+-+.|-+-+.+.-+=+++=+.++++++|...+- -+.-..|...+.
T Consensus 236 ~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 236 LTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALE 299 (385)
T ss_pred ceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHH
Confidence 45556788889999999999999999887766666667788887764433 333346666554
No 162
>PLN03139 formate dehydrogenase; Provisional
Probab=39.52 E-value=74 Score=27.64 Aligned_cols=62 Identities=8% Similarity=0.098 Sum_probs=46.2
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCC--CCHHHHhcccC
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSS--LSITEIASVTN 102 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~--l~i~~la~~~~ 102 (160)
+.+..++++.+++||+|+-+.|-+-+.+.-+-+++=+.++++++|...+-+ +.-..|...+.
T Consensus 243 ~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 306 (386)
T PLN03139 243 AKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACS 306 (386)
T ss_pred ceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHH
Confidence 445668888889999999999999999888877777788888877644433 33346666554
No 163
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=39.23 E-value=1.2e+02 Score=26.90 Aligned_cols=104 Identities=12% Similarity=0.111 Sum_probs=60.7
Q ss_pred ceecCChhh---hcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC--HHHHhcccC-CCCcEEEeecCC
Q psy3942 41 IKGSSKVED---SVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS--ITEIASVTN-RKDKFVGLHFFN 114 (160)
Q Consensus 41 i~~~~~~~~---al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~--i~~la~~~~-~p~r~ig~Hf~~ 114 (160)
+....++++ .+.++|+|+=+++-.-.++. ++..|-..+.++.||.-.+++.+ ..+.+..+. +.-+++++.-.-
T Consensus 48 ~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~-Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsG 126 (467)
T TIGR00873 48 IVGAYSIEEFVQSLERPRKIMLMVKAGAPVDA-VINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSG 126 (467)
T ss_pred ceecCCHHHHHhhcCCCCEEEEECCCcHHHHH-HHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence 334445533 34578999999999877654 66788887777776654333332 223443332 222344443322
Q ss_pred CCC---CCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 115 PVP---MMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 115 P~~---~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
-+. ..+ =++ ..-++++++++..+++.++...
T Consensus 127 G~~gA~~G~--~im--~GG~~~a~~~~~p~L~~ia~~~ 160 (467)
T TIGR00873 127 GEEGARKGP--SIM--PGGSAEAWPLVAPIFQKIAAKV 160 (467)
T ss_pred CHHHHhcCC--cCC--CCCCHHHHHHHHHHHHHHhhhc
Confidence 111 111 122 3457899999999999998763
No 164
>PLN02527 aspartate carbamoyltransferase
Probab=38.13 E-value=37 Score=28.43 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=17.9
Q ss_pred cCceecCChhhhcCCCcEEEE
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIE 59 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViE 59 (160)
..+++++|+++++++||+|.=
T Consensus 204 ~~~~~~~d~~~a~~~aDvvyt 224 (306)
T PLN02527 204 VEWEESSDLMEVASKCDVLYQ 224 (306)
T ss_pred CEEEEEcCHHHHhCCCCEEEE
Confidence 457788999889999999875
No 165
>PRK13243 glyoxylate reductase; Reviewed
Probab=37.84 E-value=41 Score=28.30 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=43.1
Q ss_pred CChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCC--CCHHHHhcccC
Q psy3942 45 SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSS--LSITEIASVTN 102 (160)
Q Consensus 45 ~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~--l~i~~la~~~~ 102 (160)
.++++.+++||+|+=++|-+-+.+.-+-+++=+.++++++|...+.+ +.-..|...+.
T Consensus 196 ~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 196 RPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence 46777889999999999999998888877777778888877644433 33345655553
No 166
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=37.76 E-value=1.9e+02 Score=24.01 Aligned_cols=83 Identities=10% Similarity=0.058 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCC-----CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHH
Q psy3942 64 NMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNR-----KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAV 138 (160)
Q Consensus 64 ~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~-----p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~ 138 (160)
..+.|+++++..-+.+.....+-.++++.+..+.....++ .+-++.+ ||+.. +.+.++.++--
T Consensus 59 t~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~----~P~y~--------~~~~~~l~~yf 126 (309)
T cd00952 59 TWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLG----RPMWL--------PLDVDTAVQFY 126 (309)
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEEC----CCcCC--------CCCHHHHHHHH
Confidence 5677889998888878777766666666666544433221 2333333 23322 23678888888
Q ss_pred HHHHHHcCCeEEEecCcCcc
Q psy3942 139 TEWGKSIGKTTIVCKDTPGF 158 (160)
Q Consensus 139 ~~~~~~lgk~pv~v~d~pGf 158 (160)
.+++...+..||++.+.|++
T Consensus 127 ~~va~a~~~lPv~iYn~P~~ 146 (309)
T cd00952 127 RDVAEAVPEMAIAIYANPEA 146 (309)
T ss_pred HHHHHhCCCCcEEEEcCchh
Confidence 88888876679999888864
No 167
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=36.49 E-value=36 Score=26.21 Aligned_cols=47 Identities=13% Similarity=0.242 Sum_probs=31.6
Q ss_pred hcCceecCChhhhcCCCcEEEEeccCChHHHHHHH-HHHhhhCCCCcEEee
Q psy3942 38 LSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLF-TSVDKIAPASAILAS 87 (160)
Q Consensus 38 l~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~-~~l~~~~~~~~iias 87 (160)
-+-+++ .+++++++.+|+|+=.+|... -.++| +++...+.++..|.-
T Consensus 46 ~~Gf~v-~~~~eAv~~aDvV~~L~PD~~--q~~vy~~~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 46 ADGFEV-MSVAEAVKKADVVMLLLPDEV--QPEVYEEEIAPNLKPGATLVF 93 (165)
T ss_dssp HTT-EC-CEHHHHHHC-SEEEE-S-HHH--HHHHHHHHHHHHS-TT-EEEE
T ss_pred HCCCee-ccHHHHHhhCCEEEEeCChHH--HHHHHHHHHHhhCCCCCEEEe
Confidence 344554 456689999999999998754 56788 899999998887764
No 168
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=36.39 E-value=13 Score=27.03 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=23.8
Q ss_pred HHHHHHHhhhCCCCcEEeecCCCCCHHHHh
Q psy3942 69 HKLFTSVDKIAPASAILASNTSSLSITEIA 98 (160)
Q Consensus 69 ~~v~~~l~~~~~~~~iiasnTS~l~i~~la 98 (160)
.++|++|..++.++++++|-|+.-.+.+-.
T Consensus 70 ~e~~~~l~~~~~~~~~l~Tys~a~~Vr~~L 99 (124)
T PF05430_consen 70 EELFKKLARLSKPGGTLATYSSAGAVRRAL 99 (124)
T ss_dssp HHHHHHHHHHEEEEEEEEES--BHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEeechHHHHHHH
Confidence 579999999999999999999987766443
No 169
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=35.59 E-value=2.2e+02 Score=22.51 Aligned_cols=111 Identities=12% Similarity=0.081 Sum_probs=61.4
Q ss_pred CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHH-HhcccCCCCcEEEe------ec
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITE-IASVTNRKDKFVGL------HF 112 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~-la~~~~~p~r~ig~------Hf 112 (160)
.+..+++.+ .+.+.|+||=|+.-. .+ .++++.|...+.++++|.+-.=++...+ +..... ++++++. +.
T Consensus 47 ~~~~~~~~~-~~~~~D~iiv~vKs~-~~-~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~-~~~v~~g~~~~~~~~ 122 (293)
T TIGR00745 47 PVSAATSPE-ELPPADLVIITVKAY-QT-EEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLP-ARRILGGVVTHGAVR 122 (293)
T ss_pred ccccccChh-hcCCCCEEEEeccch-hH-HHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhC-ccCEEEEEEEEeeEE
Confidence 344566664 478999999998754 33 5678889998889888876555655444 444443 3354432 22
Q ss_pred CCCCCCC----ceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecCc
Q psy3942 113 FNPVPMM----KLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDT 155 (160)
Q Consensus 113 ~~P~~~~----~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d~ 155 (160)
..|-... .-+-+-..+.+. +....+.+.+.+.|.......|.
T Consensus 123 ~~pg~v~~~~~~~~~iG~~~~~~-~~~~~l~~~l~~~~~~~~~~~di 168 (293)
T TIGR00745 123 EEPGVVHHAGLGATKIGDYVGEN-EAVEALAELLNEAGIPAELHGDI 168 (293)
T ss_pred cCCcEEEEeccccEEEecCCCch-HHHHHHHHHHHhCCCCCEecchH
Confidence 2222100 001111122222 44566667777777665555543
No 170
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=35.47 E-value=1.3e+02 Score=24.61 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCC-----CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHH
Q psy3942 64 NMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNR-----KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAV 138 (160)
Q Consensus 64 ~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~-----p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~ 138 (160)
..+.|+++++..-+.+.....+....++.+..+.....++ -+-++- .||+..+ .|.++.++.-
T Consensus 52 t~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~----~~P~y~~--------~~~~~i~~~~ 119 (288)
T cd00954 52 SVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISA----ITPFYYK--------FSFEEIKDYY 119 (288)
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEE----eCCCCCC--------CCHHHHHHHH
Confidence 4677888888887777777655556665655533332221 122221 1333222 3567888888
Q ss_pred HHHHHHcCCeEEEecCcCcc
Q psy3942 139 TEWGKSIGKTTIVCKDTPGF 158 (160)
Q Consensus 139 ~~~~~~lgk~pv~v~d~pGf 158 (160)
.++++.....||++.+.|++
T Consensus 120 ~~v~~a~~~lpi~iYn~P~~ 139 (288)
T cd00954 120 REIIAAAASLPMIIYHIPAL 139 (288)
T ss_pred HHHHHhcCCCCEEEEeCccc
Confidence 88888873358888777753
No 171
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=35.08 E-value=1.1e+02 Score=25.10 Aligned_cols=81 Identities=12% Similarity=0.125 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCC-----CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHH
Q psy3942 64 NMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNR-----KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAV 138 (160)
Q Consensus 64 ~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~-----p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~ 138 (160)
..+.|+++++..-+.++....+-.++++.+..+.....++ -+-++.+ ||+..+ .+.++.++..
T Consensus 55 s~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~----~P~y~~--------~~~~~l~~~f 122 (293)
T PRK04147 55 STEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAV----TPFYYP--------FSFEEICDYY 122 (293)
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEe----CCcCCC--------CCHHHHHHHH
Confidence 3467888888888888777766666666665544332221 2222222 333222 2567888888
Q ss_pred HHHHHHcCCeEEEecCcCc
Q psy3942 139 TEWGKSIGKTTIVCKDTPG 157 (160)
Q Consensus 139 ~~~~~~lgk~pv~v~d~pG 157 (160)
.+++...+. ||++.+.|+
T Consensus 123 ~~va~a~~l-Pv~iYn~P~ 140 (293)
T PRK04147 123 REIIDSADN-PMIVYNIPA 140 (293)
T ss_pred HHHHHhCCC-CEEEEeCch
Confidence 888888765 999877775
No 172
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=35.01 E-value=1.2e+02 Score=25.47 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=35.9
Q ss_pred hhhhcCCCcEEEEeccC--------------ChHHHHHHHHHHhhhCCCCcEEe--ecCCCCC---HHHHh-cccCC-CC
Q psy3942 47 VEDSVSQSDLVIEAIVE--------------NMDIKHKLFTSVDKIAPASAILA--SNTSSLS---ITEIA-SVTNR-KD 105 (160)
Q Consensus 47 ~~~al~~adlViEav~E--------------~l~~K~~v~~~l~~~~~~~~iia--snTS~l~---i~~la-~~~~~-p~ 105 (160)
+ ++++|||+||=+..= |.++=+++...|.+.+ |++++. ||-...- ++..+ ...+. |+
T Consensus 63 y-~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~ 140 (310)
T cd01337 63 K-KALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPVNSTVPIAAEVLKKAGVYDPK 140 (310)
T ss_pred H-HhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCchhhHHHHHHHHHHHhcCCCHH
Confidence 5 589999999865432 3345567778888885 466444 5554332 13332 23333 34
Q ss_pred cEEEe
Q psy3942 106 KFVGL 110 (160)
Q Consensus 106 r~ig~ 110 (160)
|++|+
T Consensus 141 rviG~ 145 (310)
T cd01337 141 RLFGV 145 (310)
T ss_pred HEEee
Confidence 66665
No 173
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=34.73 E-value=9.5 Score=27.22 Aligned_cols=15 Identities=40% Similarity=0.702 Sum_probs=12.1
Q ss_pred cCCCCcEEEeecCCC
Q psy3942 101 TNRKDKFVGLHFFNP 115 (160)
Q Consensus 101 ~~~p~r~ig~Hf~~P 115 (160)
+++...+||.||||=
T Consensus 8 ~G~~aN~vgtHfwN~ 22 (115)
T PF10644_consen 8 LGHYANFVGTHFWNI 22 (115)
T ss_pred cccccCcHHHhhhhh
Confidence 456778999999983
No 174
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=34.71 E-value=1.1e+02 Score=24.62 Aligned_cols=83 Identities=10% Similarity=0.091 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCC----CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHH
Q psy3942 64 NMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNR----KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVT 139 (160)
Q Consensus 64 ~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~----p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~ 139 (160)
+.+.|+++++..-+.++....+...+++.+..+.....++ --.-+-+ .||+..+ .++++.++...
T Consensus 48 s~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v---~pP~y~~--------~~~~~~~~~~~ 116 (281)
T cd00408 48 TDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLV---VPPYYNK--------PSQEGIVAHFK 116 (281)
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEE---CCCcCCC--------CCHHHHHHHHH
Confidence 3577889998888888777766666666666543332221 1122222 2333322 46778888888
Q ss_pred HHHHHcCCeEEEecCcCcc
Q psy3942 140 EWGKSIGKTTIVCKDTPGF 158 (160)
Q Consensus 140 ~~~~~lgk~pv~v~d~pGf 158 (160)
++++..+ .|+++.+.|++
T Consensus 117 ~ia~~~~-~pi~iYn~P~~ 134 (281)
T cd00408 117 AVADASD-LPVILYNIPGR 134 (281)
T ss_pred HHHhcCC-CCEEEEECccc
Confidence 8887764 58888777753
No 175
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=34.65 E-value=27 Score=28.53 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=43.5
Q ss_pred HHHHhcCceecCChhhhcCCCcEEEEeccCChHHH------HHHHHHHhhhC--CCCc-EEeecCCCCCHHHHhcc
Q psy3942 34 IDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIK------HKLFTSVDKIA--PASA-ILASNTSSLSITEIASV 100 (160)
Q Consensus 34 ~~~~l~~i~~~~~~~~al~~adlViEav~E~l~~K------~~v~~~l~~~~--~~~~-iiasnTS~l~i~~la~~ 100 (160)
+...++.-++.++++++++|+++|+=+-.=+-+.+ ++.-..+.+.. .+-+ ++.==..+|+-.||+.+
T Consensus 53 A~dile~A~i~~tL~eAl~d~~~v~aTtar~r~~~~~~~~P~e~~~~l~~~~~~~~vAlvFGRE~~GLtNeEl~~c 128 (242)
T COG0565 53 ARDILENAKIVDTLEEALADCDLVVATTARSRDLLRPLRTPREAAPELLEKAKGGKVALVFGRERVGLTNEELALC 128 (242)
T ss_pred chhhhccCeeecCHHHHhcCCCEEEEeccccCcccccccCHHHHHHHHHHHhcCCCeEEEECCccCCCCHHHHHhh
Confidence 45678888999999999999999997654333332 23333444443 2333 34445578888888754
No 176
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=34.55 E-value=1.4e+02 Score=26.45 Aligned_cols=100 Identities=13% Similarity=0.172 Sum_probs=62.4
Q ss_pred ceecCChhhhcC---CCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEe-ecCCCCCHH-HHhcccCCCCcEEEeecCC-
Q psy3942 41 IKGSSKVEDSVS---QSDLVIEAIVENMDIKHKLFTSVDKIAPASAILA-SNTSSLSIT-EIASVTNRKDKFVGLHFFN- 114 (160)
Q Consensus 41 i~~~~~~~~al~---~adlViEav~E~l~~K~~v~~~l~~~~~~~~iia-snTS~l~i~-~la~~~~~p~r~ig~Hf~~- 114 (160)
++...++++.++ .+|+|+=++|..-.++. ++..|-..+.++.||. ..||+..-+ +++..+.. -|+||+.
T Consensus 39 ~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~-Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~----~Gi~fvda 113 (459)
T PRK09287 39 IVPAYTLEEFVASLEKPRKILLMVKAGAPVDA-VIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAE----KGIHFIGM 113 (459)
T ss_pred eEeeCCHHHHHhhCCCCCEEEEECCCchHHHH-HHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCeEEec
Confidence 666777765554 48999999999987775 4566666666665553 444444333 45444422 2445443
Q ss_pred CCCC-------CceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 115 PVPM-------MKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 115 P~~~-------~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
|+.- .+ =++.| -++++++++.-+++.++...
T Consensus 114 pVSGG~~gA~~G~--siM~G--G~~~a~~~~~piL~~ia~~~ 151 (459)
T PRK09287 114 GVSGGEEGALHGP--SIMPG--GQKEAYELVAPILEKIAAKV 151 (459)
T ss_pred CCCCCHHHHhcCC--EEEEe--CCHHHHHHHHHHHHHHhhhh
Confidence 2221 22 23433 36899999999999998765
No 177
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=34.22 E-value=1.5e+02 Score=22.64 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhCCC-CcEEeecCCCCC
Q psy3942 67 IKHKLFTSVDKIAPA-SAILASNTSSLS 93 (160)
Q Consensus 67 ~K~~v~~~l~~~~~~-~~iiasnTS~l~ 93 (160)
--++.|.++.+.-+. ..+|.||+++-.
T Consensus 63 ~~~~~~~~l~~~~~~~~v~IvSNsaGs~ 90 (168)
T PF09419_consen 63 EYAEWLNELKKQFGKDRVLIVSNSAGSS 90 (168)
T ss_pred HHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 345567888877665 789999997433
No 178
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=33.70 E-value=34 Score=30.20 Aligned_cols=109 Identities=7% Similarity=0.008 Sum_probs=59.5
Q ss_pred CceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCC------CCcEEeecCCCCCHH-HHhcccCC-CCcEEEee
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAP------ASAILASNTSSLSIT-EIASVTNR-KDKFVGLH 111 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~------~~~iiasnTS~l~i~-~la~~~~~-p~r~ig~H 111 (160)
|+..-........+|+|-.-...+.++.|++.+.++=+... ..++.++...++--. ++.-+-.. ..-.+|++
T Consensus 64 R~~~~c~~~g~cggC~lqhl~y~~QL~~K~~~l~~~l~~~~~~~~~~~~~~~~~~~~~yR~ka~~~v~~~~~~~l~~Gf~ 143 (432)
T COG2265 64 RVDPPCPHFGRCGGCQLQHLSYEAQLEFKREQLKELLKRIGGSEVEIDPTVGMSPPWGYRNRARFSVRGSGKGQLLAGFF 143 (432)
T ss_pred hcCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHhcCCCcccccccCCCCCcCceeEEEEEEEEcCCCcEEEEee
Confidence 44443333356899999999999999999966655444322 222333333333221 11111111 11223444
Q ss_pred cCCCCCCCceEEEecCCCCCH---HHHHHHHHHHHHcCCeEEE
Q psy3942 112 FFNPVPMMKLLEVIRTNDTSD---ATYNAVTEWGKSIGKTTIV 151 (160)
Q Consensus 112 f~~P~~~~~lVEvv~~~~T~~---~~~~~~~~~~~~lgk~pv~ 151 (160)
=.+ ...+|.|...+..++ +.+..+.++++.++..|.-
T Consensus 144 ~~~---s~~iv~i~~C~v~~~~~~~il~~l~~~l~~~~~~~y~ 183 (432)
T COG2265 144 RQG---SHEIVDIDECPVFPPRSNEILPLLRELLAKLGLPPYN 183 (432)
T ss_pred ccC---CCceecccccCccCHhHHHHHHHHHHHHHHcCCCccc
Confidence 333 444555555555554 4567788899888887643
No 179
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=33.47 E-value=1.6e+02 Score=24.69 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=46.8
Q ss_pred CChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecC--CCCCHHHHhcccCCCCcEEE
Q psy3942 45 SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT--SSLSITEIASVTNRKDKFVG 109 (160)
Q Consensus 45 ~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnT--S~l~i~~la~~~~~p~r~ig 109 (160)
.++++.++.||+|+=++|-+-+-+.-+=++.=+.++|+++|...+ +-+.-..|...+. ..++-|
T Consensus 192 ~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~-~g~i~g 257 (323)
T PRK15409 192 CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ-KGEIHA 257 (323)
T ss_pred cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH-cCCeeE
Confidence 378778899999999999999988777666666778888776443 4455567777765 234444
No 180
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=33.42 E-value=26 Score=26.27 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=19.5
Q ss_pred cCceecCChhhhcCCCcEEEEeccC
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVE 63 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E 63 (160)
..+++++|++++++++|+|+=-.--
T Consensus 59 ~~i~~~~~~~e~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 59 GKITITDDIEEALKGADVVYTDRWQ 83 (158)
T ss_dssp TEEEEESSHHHHHTT-SEEEEESSS
T ss_pred CCeEEEeCHHHhcCCCCEEEEcCcc
Confidence 5688999998899999999855444
No 181
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=31.97 E-value=1.8e+02 Score=24.20 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=50.3
Q ss_pred CChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecC--CCCCHHHHhcccCC-CCcEEEeecCC
Q psy3942 45 SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT--SSLSITEIASVTNR-KDKFVGLHFFN 114 (160)
Q Consensus 45 ~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnT--S~l~i~~la~~~~~-p~r~ig~Hf~~ 114 (160)
.++++.++.||+|+=++|-+-+-+.-+=++.=+.++|+++|..-+ +-+.-..|...+.. +-+ .|+=-|.
T Consensus 188 ~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~ 259 (311)
T PRK08410 188 VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLE 259 (311)
T ss_pred ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence 367778899999999999999988777777777789999887554 44555577777653 223 5554444
No 182
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=30.70 E-value=79 Score=24.85 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=28.4
Q ss_pred HHHhcCceecCChhhhcCCCcEEEEecc-CChHHHHHHHHHHhhh
Q psy3942 35 DLTLSRIKGSSKVEDSVSQSDLVIEAIV-ENMDIKHKLFTSVDKI 78 (160)
Q Consensus 35 ~~~l~~i~~~~~~~~al~~adlViEav~-E~l~~K~~v~~~l~~~ 78 (160)
+.+..+|..--+.++-.+-||+||++-. --.++++++.+-++..
T Consensus 155 ~~a~~ri~~Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 155 QQAVAFINLQISDKEREKIADFVIDNTELTDQELESKLITTINEI 199 (204)
T ss_pred HHHHHHHHhCCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHHHHH
Confidence 3445555443444455789999999877 5566777776665554
No 183
>COG3931 Predicted N-formylglutamate amidohydrolase [Amino acid transport and metabolism]
Probab=30.54 E-value=2e+02 Score=23.71 Aligned_cols=43 Identities=19% Similarity=0.168 Sum_probs=34.8
Q ss_pred CCCCcEEEeecCCCCCCC--ceEEEecCCCCCHHHHHHHHHHHHH
Q psy3942 102 NRKDKFVGLHFFNPVPMM--KLLEVIRTNDTSDATYNAVTEWGKS 144 (160)
Q Consensus 102 ~~p~r~ig~Hf~~P~~~~--~lVEvv~~~~T~~~~~~~~~~~~~~ 144 (160)
++|-.++.+|-|.|++.. +-+|+--=-..+........+-+++
T Consensus 142 G~~~~vvsvHSFTPvy~G~~Rpw~iGiL~d~D~R~a~pll~~lr~ 186 (263)
T COG3931 142 GRAPFVVSVHSFTPVYKGRPRPWHIGILHDNDDRLADPLLAALRA 186 (263)
T ss_pred CCCcEEEEEeccCccccCCCCccEEEEeeccchhHHHHHHHHHHh
Confidence 889999999999999965 4577766667888888877777777
No 184
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=30.13 E-value=84 Score=26.11 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=25.0
Q ss_pred hcCCCcEEEEecc--CChHHHHHHHHHHhhhCCCCcEEeec
Q psy3942 50 SVSQSDLVIEAIV--ENMDIKHKLFTSVDKIAPASAILASN 88 (160)
Q Consensus 50 al~~adlViEav~--E~l~~K~~v~~~l~~~~~~~~iiasn 88 (160)
++++.|.|+=|.- -+-+-|.+++..|.+.++++++|..=
T Consensus 189 dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 189 DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp G----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 4688898887753 35668999999999999999988865
No 185
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=29.60 E-value=66 Score=23.55 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=29.9
Q ss_pred hhhhcCCCcEEEEecc---CChHHHHHHHHHHhhhCCCCcEEeecCCC
Q psy3942 47 VEDSVSQSDLVIEAIV---ENMDIKHKLFTSVDKIAPASAILASNTSS 91 (160)
Q Consensus 47 ~~~al~~adlViEav~---E~l~~K~~v~~~l~~~~~~~~iiasnTS~ 91 (160)
+.++++++|.|+-+++ .+.+.-+.+++.+.+.=.+..++.|..+.
T Consensus 54 ~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~~ 101 (183)
T PF13460_consen 54 VKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAGV 101 (183)
T ss_dssp HHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETTG
T ss_pred hhhhhhhcchhhhhhhhhcccccccccccccccccccccceeeecccc
Confidence 4567899999999998 34555556666666643344455555553
No 186
>PHA02978 hypothetical protein; Provisional
Probab=29.45 E-value=33 Score=24.69 Aligned_cols=13 Identities=46% Similarity=0.664 Sum_probs=11.5
Q ss_pred CCCcEEEEeccCC
Q psy3942 52 SQSDLVIEAIVEN 64 (160)
Q Consensus 52 ~~adlViEav~E~ 64 (160)
-+||++|||+.|+
T Consensus 110 cn~dyliecis~~ 122 (135)
T PHA02978 110 CNCDYLIECISEN 122 (135)
T ss_pred eCCCeeeeeecCC
Confidence 4899999999986
No 187
>PLN02417 dihydrodipicolinate synthase
Probab=28.92 E-value=78 Score=25.86 Aligned_cols=81 Identities=14% Similarity=-0.000 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCC----CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHH
Q psy3942 64 NMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNR----KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVT 139 (160)
Q Consensus 64 ~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~----p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~ 139 (160)
+.+.|+++++..-+.++....+...+++.+..+.....++ --.-+-+ -||+.. ..+.++.++.-.
T Consensus 52 s~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~---~~P~y~--------~~~~~~i~~~f~ 120 (280)
T PLN02417 52 SWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALH---INPYYG--------KTSQEGLIKHFE 120 (280)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEE---cCCccC--------CCCHHHHHHHHH
Confidence 4677888888877777777766666666665543332221 1122222 233321 235677777777
Q ss_pred HHHHHcCCeEEEecCcCcc
Q psy3942 140 EWGKSIGKTTIVCKDTPGF 158 (160)
Q Consensus 140 ~~~~~lgk~pv~v~d~pGf 158 (160)
++++. . |+++.+.|++
T Consensus 121 ~va~~-~--pi~lYn~P~~ 136 (280)
T PLN02417 121 TVLDM-G--PTIIYNVPGR 136 (280)
T ss_pred HHHhh-C--CEEEEEChhH
Confidence 77664 3 9998888864
No 188
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=28.87 E-value=2.8e+02 Score=21.60 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=43.7
Q ss_pred HHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeE
Q psy3942 70 KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTT 149 (160)
Q Consensus 70 ~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~p 149 (160)
.++..+.+ +-++++++++-++--..+++.... |+|+.++.- -.++.+...+..+|. |
T Consensus 32 ~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~g-------------------v~vi~tpG~--GYv~Dl~~al~~l~~-P 88 (177)
T COG2266 32 RVLEALRK-IVDEIIVAISPHTPKTKEYLESVG-------------------VKVIETPGE--GYVEDLRFALESLGT-P 88 (177)
T ss_pred HHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcC-------------------ceEEEcCCC--ChHHHHHHHHHhcCC-c
Confidence 44556666 347788888888877777765432 677765543 367888888888998 8
Q ss_pred EEe--cCcC
Q psy3942 150 IVC--KDTP 156 (160)
Q Consensus 150 v~v--~d~p 156 (160)
+++ .|-|
T Consensus 89 ~lvvsaDLp 97 (177)
T COG2266 89 ILVVSADLP 97 (177)
T ss_pred eEEEecccc
Confidence 776 4654
No 189
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=28.25 E-value=1.4e+02 Score=24.32 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=49.3
Q ss_pred CChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccC-----CCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHH
Q psy3942 63 ENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTN-----RKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNA 137 (160)
Q Consensus 63 E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~-----~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~ 137 (160)
=..+.|+++++..-+.+.....+....++.+..+.....+ .-+-++.+ ||+..+ .++++.++.
T Consensus 48 Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~----pP~y~~--------~~~~~i~~~ 115 (285)
T TIGR00674 48 LSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVV----TPYYNK--------PTQEGLYQH 115 (285)
T ss_pred CCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEc----CCcCCC--------CCHHHHHHH
Confidence 3466788888888887777776666666666665333222 12223322 222222 256777777
Q ss_pred HHHHHHHcCCeEEEecCcCc
Q psy3942 138 VTEWGKSIGKTTIVCKDTPG 157 (160)
Q Consensus 138 ~~~~~~~lgk~pv~v~d~pG 157 (160)
-.+++...+ .||++.+.|.
T Consensus 116 ~~~i~~~~~-~pi~lYn~P~ 134 (285)
T TIGR00674 116 FKAIAEEVD-LPIILYNVPS 134 (285)
T ss_pred HHHHHhcCC-CCEEEEECcH
Confidence 778877775 5888877674
No 190
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=27.75 E-value=1.1e+02 Score=25.35 Aligned_cols=81 Identities=7% Similarity=0.047 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCC-----CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHH
Q psy3942 64 NMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNR-----KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAV 138 (160)
Q Consensus 64 ~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~-----p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~ 138 (160)
..+.|+++++..-+.+.....+-.+.++ ++.+-....++ .+-++- .||+..+ .+.++.++.-
T Consensus 58 t~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~----~pP~y~~--------~~~~~i~~~f 124 (303)
T PRK03620 58 TPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGADGILL----LPPYLTE--------APQEGLAAHV 124 (303)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEE----CCCCCCC--------CCHHHHHHHH
Confidence 4566788888777666665544333344 55443332222 122222 2333221 2466777777
Q ss_pred HHHHHHcCCeEEEecCcCcc
Q psy3942 139 TEWGKSIGKTTIVCKDTPGF 158 (160)
Q Consensus 139 ~~~~~~lgk~pv~v~d~pGf 158 (160)
.+++...+ .||++.+.||+
T Consensus 125 ~~va~~~~-lpi~lYn~~g~ 143 (303)
T PRK03620 125 EAVCKSTD-LGVIVYNRDNA 143 (303)
T ss_pred HHHHHhCC-CCEEEEcCCCC
Confidence 77777775 58887667764
No 191
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=27.74 E-value=63 Score=22.17 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=25.3
Q ss_pred HHHHHHHHhhhCCCCcEEeecCCCCCHHHHhccc
Q psy3942 68 KHKLFTSVDKIAPASAILASNTSSLSITEIASVT 101 (160)
Q Consensus 68 K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~ 101 (160)
=.+.++.|.+. .....+.||+|+.+..+++..+
T Consensus 19 a~e~l~~L~~~-g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 19 AVEALDALRER-GKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp HHHHHHHHHHT-TSEEEEEES-SSS-HHHHHHHH
T ss_pred HHHHHHHHHHc-CCCEEEEeCCCCCCHHHHHHHH
Confidence 35778888876 6778999999999999988766
No 192
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=27.57 E-value=1.5e+02 Score=25.63 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=40.7
Q ss_pred CCc-EEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcCcc
Q psy3942 81 ASA-ILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC-KDTPGF 158 (160)
Q Consensus 81 ~~~-iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v-~d~pGf 158 (160)
.++ .+.|+-|+.+++++++...-| .||.+ |. .-+.+......+-+++.|-..+++ -|.|.+
T Consensus 99 ~gi~~~lSt~ss~slEeva~~~~~~------~wfQl-Y~----------~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~ 161 (367)
T PLN02493 99 AGTIMTLSSWATSSVEEVASTGPGI------RFFQL-YV----------YKNRNVVEQLVRRAERAGFKAIALTVDTPRL 161 (367)
T ss_pred cCCCeeecCcccCCHHHHHhcCCCC------cEEEE-ee----------cCCHHHHHHHHHHHHHcCCCEEEEEcCCCCC
Confidence 344 444777999999999763222 24332 32 225667777888888899998887 787754
No 193
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=27.51 E-value=1.2e+02 Score=20.68 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=26.1
Q ss_pred cCceec-CChhhhcCCCcEEEEeccCChHHHHHHHHHHhh
Q psy3942 39 SRIKGS-SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDK 77 (160)
Q Consensus 39 ~~i~~~-~~~~~al~~adlViEav~E~l~~K~~v~~~l~~ 77 (160)
+++++. ..+++.+.++|+|+ +.+++.++.+++++...+
T Consensus 45 ~~i~~~~~~~~~~l~~~~lV~-~at~d~~~n~~i~~~a~~ 83 (103)
T PF13241_consen 45 GLIQLIRREFEEDLDGADLVF-AATDDPELNEAIYADARA 83 (103)
T ss_dssp TSCEEEESS-GGGCTTESEEE-E-SS-HHHHHHHHHHHHH
T ss_pred hHHHHHhhhHHHHHhhheEEE-ecCCCHHHHHHHHHHHhh
Confidence 555543 34556789999999 677888899888887664
No 194
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=26.82 E-value=2.9e+02 Score=24.07 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=30.9
Q ss_pred CCCcEEE-EeccCChHHHHHHHHHHhhhC--------CCCcEEeecCCCCCH
Q psy3942 52 SQSDLVI-EAIVENMDIKHKLFTSVDKIA--------PASAILASNTSSLSI 94 (160)
Q Consensus 52 ~~adlVi-Eav~E~l~~K~~v~~~l~~~~--------~~~~iiasnTS~l~i 94 (160)
+++|+|| =.+-|+-..=.+++.++..+- -+.+++..|||+-|+
T Consensus 181 ~~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~~~~~~m~rtvlV~nts~~p~ 232 (369)
T cd01134 181 SNSDIVIYVGCGERGNEMTEVLEEFPELTDPVTGEPLMKRTVLIANTSNMPV 232 (369)
T ss_pred CCCCEEEEEEeCCChHHHHHHHHHHHhhccccccCCccceEEEEEECCCCCH
Confidence 4566666 677788888888888875432 246788888888774
No 195
>KOG3124|consensus
Probab=26.55 E-value=3.8e+02 Score=22.30 Aligned_cols=99 Identities=13% Similarity=0.135 Sum_probs=75.3
Q ss_pred ecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCC----CcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCC
Q psy3942 43 GSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPA----SAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPM 118 (160)
Q Consensus 43 ~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~----~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~ 118 (160)
+.++. +.+..+|.|+.++ |..++..+-.-.++ .-||.|---+.+++.+-..+.-+.|++-+-+--|...
T Consensus 52 ~~~n~-~~~~~s~v~~~sv------Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v 124 (267)
T KOG3124|consen 52 VFTNL-EVLQASDVVFLSV------KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVV 124 (267)
T ss_pred eechH-HHHhhccceeEee------cchhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhh
Confidence 34444 5788999999887 77777666665555 3589999999999999999987788988766666665
Q ss_pred CceEE-EecCCCCCHHHHHHHHHHHHHcCCe
Q psy3942 119 MKLLE-VIRTNDTSDATYNAVTEWGKSIGKT 148 (160)
Q Consensus 119 ~~lVE-vv~~~~T~~~~~~~~~~~~~~lgk~ 148 (160)
.-..- +..+.....+-.+.+..|+...|+-
T Consensus 125 ~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~ 155 (267)
T KOG3124|consen 125 GEGASVYAIGCHATNEDLELVEELLSAVGLC 155 (267)
T ss_pred hcCcEEEeeCCCcchhhHHHHHHHHHhcCcc
Confidence 55555 4467777777778899999999984
No 196
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=26.22 E-value=87 Score=24.54 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=44.5
Q ss_pred HHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccC---CCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHc
Q psy3942 69 HKLFTSVDKIAPASAILASNTSSLSITEIASVTN---RKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSI 145 (160)
Q Consensus 69 ~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~---~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~l 145 (160)
.++++++... .+|.|+.+..++-.+.=++..+. ..-|++|+.. +++ .-+++++++..+.|++.-
T Consensus 143 ~Ei~~q~~~~-~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~----------~~~--~v~d~~~~~a~~~l~~~~ 209 (244)
T cd00640 143 LEILEQLGGQ-KPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP----------EVV--TVSDEEALEAIRLLAREE 209 (244)
T ss_pred HHHHHHcCCC-CCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee----------eEE--EECHHHHHHHHHHHHHHc
Confidence 4555555543 48999998888877777776653 2347777754 333 345788888888888775
Q ss_pred CC
Q psy3942 146 GK 147 (160)
Q Consensus 146 gk 147 (160)
|.
T Consensus 210 gi 211 (244)
T cd00640 210 GI 211 (244)
T ss_pred Cc
Confidence 54
No 197
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=25.75 E-value=2.4e+02 Score=23.13 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=29.9
Q ss_pred CChhhhcC--CCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEe-ecCC---CCCHHHHhccc
Q psy3942 45 SKVEDSVS--QSDLVIEAIVENMDIKHKLFTSVDKIAPASAILA-SNTS---SLSITEIASVT 101 (160)
Q Consensus 45 ~~~~~al~--~adlViEav~E~l~~K~~v~~~l~~~~~~~~iia-snTS---~l~i~~la~~~ 101 (160)
.++.++++ +.|+.|=+-.----.++++++.+.+.+++=.|++ ||-. -++..+.-.++
T Consensus 96 ~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 35555566 6666665433122456666666666665545554 4432 34555555554
No 198
>PF14794 DUF4479: Domain of unknown function (DUF4479); PDB: 3BU2_C.
Probab=25.69 E-value=1e+02 Score=20.26 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=27.2
Q ss_pred CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEecC
Q psy3942 104 KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKD 154 (160)
Q Consensus 104 p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v~d 154 (160)
...++|.+|||-...+.+-. -..-.-+++-++.+-+.++.-|-...+..|
T Consensus 23 ~~~~vGyNif~~S~~l~i~~-~G~V~Lt~eqv~~LN~~l~~~Gf~~~L~~D 72 (73)
T PF14794_consen 23 TGETVGYNIFNASSYLEIEG-NGQVFLTEEQVAKLNQALQKAGFDEELEAD 72 (73)
T ss_dssp TTEEEEEEEETGGGTS------------HHHHHHHHHHHHHTT--------
T ss_pred CCcEEEEEEEccccceeecC-CcCEEcCHHHHHHHHHHHHHcCCCceeccC
Confidence 46899999999777665544 444566788889999999999987766543
No 199
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=25.38 E-value=1.4e+02 Score=25.61 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=31.8
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHH-HHHhhhCCCCcEEe
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLF-TSVDKIAPASAILA 86 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~-~~l~~~~~~~~iia 86 (160)
.++ .+++++++.||+|+=++|. .+. +.++ .++-..++++++|.
T Consensus 60 ~~v-~sl~Eaak~ADVV~llLPd-~~t-~~V~~~eil~~MK~GaiL~ 103 (335)
T PRK13403 60 FEV-MSVSEAVRTAQVVQMLLPD-EQQ-AHVYKAEVEENLREGQMLL 103 (335)
T ss_pred CEE-CCHHHHHhcCCEEEEeCCC-hHH-HHHHHHHHHhcCCCCCEEE
Confidence 444 3787889999999999995 444 4666 46777778877665
No 200
>PRK10433 putative RNA methyltransferase; Provisional
Probab=25.37 E-value=51 Score=26.53 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=41.3
Q ss_pred HHHHhcCceecCChhhhcCCCcEEEEeccCChH------HHHHHHHHHhhhC---CCCc-EEeecCCCCCHHHHhcc
Q psy3942 34 IDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMD------IKHKLFTSVDKIA---PASA-ILASNTSSLSITEIASV 100 (160)
Q Consensus 34 ~~~~l~~i~~~~~~~~al~~adlViEav~E~l~------~K~~v~~~l~~~~---~~~~-iiasnTS~l~i~~la~~ 100 (160)
+...+.+.+..++++++++++++|+=+-.-.-. .-+++...+.... .+-+ ++..=..+++-.++..+
T Consensus 51 A~d~L~~a~v~~tL~eAl~d~~~vigttar~~~~~~~~~~p~~~~~~l~~~~~~~~~~alvfG~E~~Gl~~~~l~~c 127 (228)
T PRK10433 51 SGDILDNAKVFDTLAEALHDVDFTVATTARSRAKFHYYATPAELVPLLEEKSSWMSHAALVFGREDSGLTNEELALA 127 (228)
T ss_pred HHHHhcCceEECCHHHHHHhCCeEEEEccCCCCCCCcccCHHHHHHHHHhhhcccCCEEEEECCCCCCCCHHHHHhC
Confidence 456788888889999999999999865542111 1123334444332 2334 34455678887777654
No 201
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=25.34 E-value=1.2e+02 Score=18.76 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEecCcCcc
Q psy3942 127 TNDTSDATYNAVTEWGKSIGKTTIVCKDTPGF 158 (160)
Q Consensus 127 ~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf 158 (160)
...|-.++++.++++++.-|...+++.+..|=
T Consensus 24 ~~~Tk~eAi~~Ar~~a~~~~~~el~Ih~~dG~ 55 (62)
T PF09954_consen 24 TFDTKAEAIEAARELAKNQGGGELIIHGRDGK 55 (62)
T ss_pred ccCcHHHHHHHHHHHHHhCCCcEEEEECCCCe
Confidence 34688899999999999987888888766664
No 202
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=25.27 E-value=1.4e+02 Score=24.04 Aligned_cols=52 Identities=10% Similarity=0.245 Sum_probs=29.4
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHH
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEI 97 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~l 97 (160)
+...+|+++.+.++|+|+++.+-+.- +.-+..-++. .-+.+++ |.+++..++
T Consensus 48 i~~~~dl~~ll~~~DvVid~t~p~~~-~~~~~~al~~--G~~vvig--ttG~s~~~~ 99 (257)
T PRK00048 48 VAITDDLEAVLADADVLIDFTTPEAT-LENLEFALEH--GKPLVIG--TTGFTEEQL 99 (257)
T ss_pred ccccCCHHHhccCCCEEEECCCHHHH-HHHHHHHHHc--CCCEEEE--CCCCCHHHH
Confidence 34567887667789999999865553 2222222222 3344444 556665533
No 203
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=24.80 E-value=2.8e+02 Score=20.13 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=45.1
Q ss_pred HHHHHHhhh-CCCCcEEeecCCCCCHHH-----------------HhcccCCCCcEEEeecCCCCCCCceEEEecCCCCC
Q psy3942 70 KLFTSVDKI-APASAILASNTSSLSITE-----------------IASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTS 131 (160)
Q Consensus 70 ~v~~~l~~~-~~~~~iiasnTS~l~i~~-----------------la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~ 131 (160)
.+...++.. -+++.+|.|..| +|... |++.++.+..-+.+-|.+- .. +++++.
T Consensus 6 ~I~~~~~~~~~~~~~llfsaHg-iP~~~~~~gd~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~--~g------~~~Wl~ 76 (135)
T cd00419 6 HIREALAELPREKDRLLFSAHG-LPVRDIKKGDPYPDQCEETARLVAERLGLPFDEYELAYQSR--FG------PGEWLE 76 (135)
T ss_pred HHHHHHHhcCCCCCEEEEEcCC-CHHHHhhCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEecCC--CC------CCCCCC
Confidence 444445443 356778888888 45333 3344432222233334331 11 467999
Q ss_pred HHHHHHHHHHHHHcCCeEEEecCcCcccC
Q psy3942 132 DATYNAVTEWGKSIGKTTIVCKDTPGFTP 160 (160)
Q Consensus 132 ~~~~~~~~~~~~~lgk~pv~v~d~pGfi~ 160 (160)
|.+-+.+..+.+. |..-|++- .+||+.
T Consensus 77 P~~~~~l~~l~~~-G~~~i~v~-p~gF~~ 103 (135)
T cd00419 77 PSTDDALEELAKE-GVKNVVVV-PIGFVS 103 (135)
T ss_pred CCHHHHHHHHHHc-CCCeEEEE-CCcccc
Confidence 9998888887766 75444442 577763
No 204
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=24.28 E-value=1.1e+02 Score=23.57 Aligned_cols=45 Identities=11% Similarity=0.094 Sum_probs=26.7
Q ss_pred HHhcCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCC
Q psy3942 36 LTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAP 80 (160)
Q Consensus 36 ~~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~ 80 (160)
.+..++..--+.+.-...||+||++-..--++++++-+-++.+..
T Consensus 153 ~~~~ri~~Q~~~~~k~~~ad~vI~N~g~~e~l~~~v~~~~~~~~~ 197 (200)
T PRK14734 153 DARRRIAAQIPDDVRLKAADIVVDNNGTREQLLAQVDGLIAEILS 197 (200)
T ss_pred HHHHHHHhcCCHHHHHHhCCEEEECcCCHHHHHHHHHHHHHHHHh
Confidence 344455433333334689999999866555566666655555543
No 205
>PRK13980 NAD synthetase; Provisional
Probab=24.09 E-value=2.6e+02 Score=22.50 Aligned_cols=58 Identities=9% Similarity=0.109 Sum_probs=39.0
Q ss_pred CcEEeecCCCCCHHHHhcccC---CCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 82 SAILASNTSSLSITEIASVTN---RKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 82 ~~iiasnTS~l~i~~la~~~~---~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
+.++..-|-++..+-++..+. .+.+++++|+-++ .++++..+.+..+++.+|..-.++
T Consensus 31 ~~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~~~~~-------------~~~~~~~~~a~~la~~lgi~~~~i 91 (265)
T PRK13980 31 KGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSS-------------VSPPEDLEDAELVAEDLGIEYKVI 91 (265)
T ss_pred CcEEEECCCCHHHHHHHHHHHHHhCccceEEEEeeCC-------------CCCHHHHHHHHHHHHHhCCCeEEE
Confidence 455555666666665544332 2568888886433 456777899999999999866555
No 206
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=24.04 E-value=69 Score=26.58 Aligned_cols=90 Identities=19% Similarity=0.226 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhC---CCCcEEeecC-CCCCHHHHhcccCCCCcEEEeecCC-C---CCCCceEEEecCCCCCHHHHHH
Q psy3942 66 DIKHKLFTSVDKIA---PASAILASNT-SSLSITEIASVTNRKDKFVGLHFFN-P---VPMMKLLEVIRTNDTSDATYNA 137 (160)
Q Consensus 66 ~~K~~v~~~l~~~~---~~~~iiasnT-S~l~i~~la~~~~~p~r~ig~Hf~~-P---~~~~~lVEvv~~~~T~~~~~~~ 137 (160)
++++..++-++.+. ..=.|||.|| |++.+.+|-+..+.| |+|+=+-- | ......|=|+.++.|=... .
T Consensus 51 ~I~~~~~~i~~~l~~~~ik~lVIACNTASa~al~~LR~~~~iP--VvGviPaik~A~~~t~~~~IgViaT~~Tvks~--~ 126 (269)
T COG0796 51 EIRERTLEIVDFLLERGIKALVIACNTASAVALEDLREKFDIP--VVGVIPAIKPAVALTRNGRIGVIATPATVKSN--A 126 (269)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhCCCC--EEEeccchHHHHHhccCCeEEEEeccchhccH--H
Confidence 34554444444444 4445999999 777788887777444 67764111 0 0122345555555553322 1
Q ss_pred HHHHHHHcCCeEEE-ecCcCccc
Q psy3942 138 VTEWGKSIGKTTIV-CKDTPGFT 159 (160)
Q Consensus 138 ~~~~~~~lgk~pv~-v~d~pGfi 159 (160)
.+.+.+++.....+ ..-+|+||
T Consensus 127 y~~~i~~~~~~~~V~~la~p~lV 149 (269)
T COG0796 127 YRDLIARFAPDCEVESLACPELV 149 (269)
T ss_pred HHHHHHHhCCCCEEEEecCcchH
Confidence 22333333333222 34566665
No 207
>KOG4716|consensus
Probab=23.95 E-value=17 Score=31.78 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=29.0
Q ss_pred CCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEE
Q psy3942 103 RKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIV 151 (160)
Q Consensus 103 ~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~ 151 (160)
.-+|++|+||..|. .-||++|-...-.+--+...|-..+|.+|..
T Consensus 436 ~~qkv~G~H~lgPn----AgEV~QGfaaAlk~glt~~~l~ntigIHPt~ 480 (503)
T KOG4716|consen 436 EDQKVLGLHILGPN----AGEVIQGFAAALKCGLTKKDLDNTIGIHPTT 480 (503)
T ss_pred CCceEEEEEEecCc----hhHHHHHHHHHHHhcccHHHHhhcccccccc
Confidence 35799999999985 3577766554444444445555556666654
No 208
>PLN02926 histidinol dehydrogenase
Probab=23.80 E-value=71 Score=28.33 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=60.2
Q ss_pred cCceecCChhhhcCCCcEEEEeccCChHHH-HHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcE-EEeecCCCC
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIK-HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKF-VGLHFFNPV 116 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~l~~K-~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~-ig~Hf~~P~ 116 (160)
+.|-.+.|+++++ +++=+=.||.|++- .+-..-++++-..++|+.-+-|.-++.+-+++.+|---- =..+|+.+.
T Consensus 306 g~iivv~~l~ea~---~~~N~~APEHLei~~~~~~~~l~~i~nAGaiFlG~~sp~a~GDY~aGpNHvLPT~G~AR~~sgL 382 (431)
T PLN02926 306 SFIVVARDMAEAI---SFSNLYAPEHLIVNVEDAESWLDKIDNAGSVFLGRWTPESVGDYASGTNHVLPTYGYARMYGGV 382 (431)
T ss_pred CEEEEECCHHHHH---HHHHhhChHhheehhcCHHHHHhhcCccceeccCCCCchhhhccccCcCcccCCCcceeecCCC
Confidence 6778889997654 44445689999985 233555666667889999888888888888876652111 123566665
Q ss_pred CCCceEEEecCCCCCHHHHHHH
Q psy3942 117 PMMKLLEVIRTNDTSDATYNAV 138 (160)
Q Consensus 117 ~~~~lVEvv~~~~T~~~~~~~~ 138 (160)
....++--+.--..+++.+...
T Consensus 383 sv~~FlK~~s~~~~s~~~l~~l 404 (431)
T PLN02926 383 SLDSFLKYMTVQSLTEEGLQNL 404 (431)
T ss_pred cHHHhcceeeEEEECHHHHHHH
Confidence 5444444444444445444443
No 209
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=23.43 E-value=60 Score=22.75 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=33.6
Q ss_pred ceecC-ChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHH
Q psy3942 41 IKGSS-KVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITE 96 (160)
Q Consensus 41 i~~~~-~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~ 96 (160)
+.+.+ +. +.+.++|+|+-|.+... .+++..++ ...++.+..+++.+...+
T Consensus 54 ~~~~~~~~-~~~~~~Dvvf~a~~~~~--~~~~~~~~---~~~g~~ViD~s~~~R~~~ 104 (121)
T PF01118_consen 54 LSVEDADP-EELSDVDVVFLALPHGA--SKELAPKL---LKAGIKVIDLSGDFRLDD 104 (121)
T ss_dssp EBEEETSG-HHHTTESEEEE-SCHHH--HHHHHHHH---HHTTSEEEESSSTTTTST
T ss_pred eeEeecch-hHhhcCCEEEecCchhH--HHHHHHHH---hhCCcEEEeCCHHHhCCC
Confidence 34443 44 46899999999987654 44555555 567889999998875544
No 210
>PLN02535 glycolate oxidase
Probab=23.36 E-value=2.3e+02 Score=24.46 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=40.1
Q ss_pred CCcEE-eecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcCc
Q psy3942 81 ASAIL-ASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC-KDTPG 157 (160)
Q Consensus 81 ~~~ii-asnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v-~d~pG 157 (160)
-+++. .|+.|+.|++++++.... -+||.+ |. .-+.+......+-++..|-..+++ -|.|-
T Consensus 101 ~g~~~~lSt~s~~slEeva~~~~~------~~wfQl-Y~----------~~dr~~~~~ll~RA~~aG~~alvlTvD~p~ 162 (364)
T PLN02535 101 CNTIMVLSFMASCTVEEVASSCNA------VRFLQL-YV----------YKRRDIAAQLVQRAEKNGYKAIVLTADVPR 162 (364)
T ss_pred cCCCeEecCcccCCHHHHHhcCCC------CeEEEE-ec----------cCCHHHHHHHHHHHHHcCCCEEEEeecCCC
Confidence 44444 466699999999975321 234443 32 235667777778888899988887 67764
No 211
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=23.08 E-value=71 Score=26.76 Aligned_cols=52 Identities=6% Similarity=0.192 Sum_probs=34.5
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC-HHHHh
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS-ITEIA 98 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~-i~~la 98 (160)
+...++.+++++++|+|+=|.+.. +.+|. .+.++|++.|.+-.|.-| ..||-
T Consensus 180 v~~~~~~~eav~~aDiVitaT~s~----~P~~~--~~~l~~g~~v~~vGs~~p~~~Eld 232 (325)
T TIGR02371 180 VRAATDPREAVEGCDILVTTTPSR----KPVVK--ADWVSEGTHINAIGADAPGKQELD 232 (325)
T ss_pred EEEeCCHHHHhccCCEEEEecCCC----CcEec--HHHcCCCCEEEecCCCCcccccCC
Confidence 456788888999999999998763 34442 234578887765555443 33443
No 212
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=23.04 E-value=1.6e+02 Score=22.32 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=19.0
Q ss_pred HHHHHHHhhhCCCCcEEeecCCCC
Q psy3942 69 HKLFTSVDKIAPASAILASNTSSL 92 (160)
Q Consensus 69 ~~v~~~l~~~~~~~~iiasnTS~l 92 (160)
..+++.|.+.+++++|+.+.+.+.
T Consensus 5 ~~~~~~l~~~l~~~~iiv~d~g~~ 28 (183)
T cd02005 5 ARLWQQVQNFLKPNDILVAETGTS 28 (183)
T ss_pred HHHHHHHHHhcCCCCEEEECCchH
Confidence 457888888889899888876664
No 213
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=23.01 E-value=1.9e+02 Score=23.80 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=63.6
Q ss_pred hhhcCCCcEEEEeccCCh--HHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhccc----CCCCcEEEeecCCCCCCCce
Q psy3942 48 EDSVSQSDLVIEAIVENM--DIKHKLFTSVDKIAPASAILASNTSSLSITEIASVT----NRKDKFVGLHFFNPVPMMKL 121 (160)
Q Consensus 48 ~~al~~adlViEav~E~l--~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~----~~p~r~ig~Hf~~P~~~~~l 121 (160)
++....-|+++.||.=-- +++-+.+. ...++-.++-+.|++|...++... ..-.-++.+-|+.-...+|-
T Consensus 79 ~~~~g~lD~lVHsIaFa~k~el~G~~~d----tsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~vPn 154 (259)
T COG0623 79 KKKWGKLDGLVHSIAFAPKEELKGDYLD----TSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVVPN 154 (259)
T ss_pred HHhhCcccEEEEEeccCChHHhCCcccc----cCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeecCC
Confidence 345667788888874332 33333332 334555677888999999999765 34457888887776555555
Q ss_pred EEEecCCCCCHHHHHHHH-HHHHHcCCeEEEecC
Q psy3942 122 LEVIRTNDTSDATYNAVT-EWGKSIGKTTIVCKD 154 (160)
Q Consensus 122 VEvv~~~~T~~~~~~~~~-~~~~~lgk~pv~v~d 154 (160)
--|+. -....++... -++..+|+.-|.|+-
T Consensus 155 YNvMG---vAKAaLEasvRyLA~dlG~~gIRVNa 185 (259)
T COG0623 155 YNVMG---VAKAALEASVRYLAADLGKEGIRVNA 185 (259)
T ss_pred CchhH---HHHHHHHHHHHHHHHHhCccCeEEee
Confidence 44442 2344455444 455779999999863
No 214
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=22.99 E-value=96 Score=26.30 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=22.1
Q ss_pred cCceecCChhhhcCCCcEEEEeccCChH
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVENMD 66 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~l~ 66 (160)
+.|++++|..+|+++||+|.==+--.+.
T Consensus 207 ~~i~~t~d~~eAv~gADvvyTDvWvSMG 234 (310)
T COG0078 207 GKITLTEDPEEAVKGADVVYTDVWVSMG 234 (310)
T ss_pred CeEEEecCHHHHhCCCCEEEecCcccCc
Confidence 4799999998899999999865544433
No 215
>KOG0343|consensus
Probab=22.84 E-value=4.4e+02 Score=24.77 Aligned_cols=83 Identities=19% Similarity=0.327 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHhhhC-CCCcEEeecCCCCCHHHHhcccCCCCcEEEee----cCCCCCCCceEEEecCCCCCHHHHHHHH
Q psy3942 65 MDIKHKLFTSVDKIA-PASAILASNTSSLSITEIASVTNRKDKFVGLH----FFNPVPMMKLLEVIRTNDTSDATYNAVT 139 (160)
Q Consensus 65 l~~K~~v~~~l~~~~-~~~~iiasnTS~l~i~~la~~~~~p~r~ig~H----f~~P~~~~~lVEvv~~~~T~~~~~~~~~ 139 (160)
+..|.-+=.=|+.+- ...|+|.|.|-+-++.+||..+-.-.+++++| ...|..++...=+|+-. +-+.-+.
T Consensus 230 MGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~----~Ki~~L~ 305 (758)
T KOG0343|consen 230 MGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLE----DKIDMLW 305 (758)
T ss_pred HhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehh----hHHHHHH
Confidence 444544444444432 26799999999999999998654445799999 66677777766666532 3356667
Q ss_pred HHHHH-cCCeEEE
Q psy3942 140 EWGKS-IGKTTIV 151 (160)
Q Consensus 140 ~~~~~-lgk~pv~ 151 (160)
.|.+. +.+..|+
T Consensus 306 sFI~shlk~K~iV 318 (758)
T KOG0343|consen 306 SFIKSHLKKKSIV 318 (758)
T ss_pred HHHHhccccceEE
Confidence 77766 5555554
No 216
>PLN02928 oxidoreductase family protein
Probab=22.57 E-value=97 Score=26.29 Aligned_cols=58 Identities=9% Similarity=0.084 Sum_probs=44.0
Q ss_pred CChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecC--CCCCHHHHhcccC
Q psy3942 45 SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT--SSLSITEIASVTN 102 (160)
Q Consensus 45 ~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnT--S~l~i~~la~~~~ 102 (160)
.++++.+++||+|+-++|-+-+-+.-+=++.=+.++++++|..-. .-+.-..|...+.
T Consensus 218 ~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 218 EDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred cCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 467778899999999999998887777677777778888777554 3444556766664
No 217
>PLN02422 dephospho-CoA kinase
Probab=22.52 E-value=1.6e+02 Score=23.72 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=27.2
Q ss_pred HhcCceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhC
Q psy3942 37 TLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIA 79 (160)
Q Consensus 37 ~l~~i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~ 79 (160)
+..|+.--.+.++-.+.+|+||++-..-.++++++-+-++...
T Consensus 154 a~~Ri~~Q~~~eek~~~AD~VI~N~gs~e~L~~qv~~ll~~l~ 196 (232)
T PLN02422 154 ARNRINAQMPLDWKRSKADIVIDNSGSLEDLKQQFQKVLEKIR 196 (232)
T ss_pred HHHHHHHcCChhHHHhhCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence 3344433223333467899999988766667777776666654
No 218
>PLN02342 ornithine carbamoyltransferase
Probab=22.33 E-value=1.3e+02 Score=25.76 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.3
Q ss_pred CceecCChhhhcCCCcEEEEe
Q psy3942 40 RIKGSSKVEDSVSQSDLVIEA 60 (160)
Q Consensus 40 ~i~~~~~~~~al~~adlViEa 60 (160)
.+.+++|+++++++||+|.=-
T Consensus 246 ~~~~~~d~~eav~~aDVvy~~ 266 (348)
T PLN02342 246 KIEITNDPAEAVKGADVVYTD 266 (348)
T ss_pred cEEEEcCHHHHhCCCCEEEEC
Confidence 688899998899999999854
No 219
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=22.29 E-value=1.3e+02 Score=22.27 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=23.8
Q ss_pred CCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCC
Q psy3942 52 SQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTS 90 (160)
Q Consensus 52 ~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS 90 (160)
.++|+|+|| +.....+...-..|+. .-.-+|-|..+
T Consensus 86 ~gvDiVie~-tG~f~~~~~~~~hl~~--GakkViisap~ 121 (149)
T smart00846 86 LGVDIVVEC-TGKFTTREKASAHLKA--GAKKVIISAPA 121 (149)
T ss_pred cCCeEEEec-cccccchHHHHHHHHc--CCCEEEeCCCC
Confidence 478999999 7777666666566665 33445555443
No 220
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=21.98 E-value=63 Score=28.59 Aligned_cols=96 Identities=18% Similarity=0.165 Sum_probs=57.5
Q ss_pred cCceecCChhhhcCCCcEEEEeccCChHHH-HHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEE-EeecCCCC
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIK-HKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFV-GLHFFNPV 116 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~l~~K-~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~i-g~Hf~~P~ 116 (160)
+.|-.+.|+++++. ++=+=.||.|++- .+-+.-++++-..++|+.-.-|.-++.+-+++.+|----- ..+|+.|.
T Consensus 303 g~iivv~~leeai~---~~N~~APEHLel~~~~p~~~l~~I~nAGaiFlG~~tp~a~GDY~aGpNHvLPT~G~AR~~sgL 379 (425)
T PRK00877 303 GAIILVDDLEEAIE---LSNAYAPEHLEIQTEDPRALLDRIRNAGAIFLGPYTPESLGDYAAGPNHVLPTSGTARFSSGL 379 (425)
T ss_pred CEEEEECCHHHHHH---HHHhhChHheeehhCCHHHHHhhcCccceeccCCCCchhhhhcccCCCcccCCCcceeecCCc
Confidence 56778899976654 3344578998875 3445566777778999998888888888887766521111 12455555
Q ss_pred CCCceEEEecCCCCCHHHHHH
Q psy3942 117 PMMKLLEVIRTNDTSDATYNA 137 (160)
Q Consensus 117 ~~~~lVEvv~~~~T~~~~~~~ 137 (160)
....++--+.--..+++.+..
T Consensus 380 sV~~F~K~~s~~~~s~~~l~~ 400 (425)
T PRK00877 380 SVYDFLKRSSVIELSKEGLKA 400 (425)
T ss_pred cHHHhccceeEEEECHHHHHH
Confidence 443333333333334444333
No 221
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=21.91 E-value=2.3e+02 Score=23.60 Aligned_cols=57 Identities=14% Similarity=0.136 Sum_probs=30.7
Q ss_pred CChhhhcC--CCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEe-ecCC---CCCHHHHhccc
Q psy3942 45 SKVEDSVS--QSDLVIEAIVENMDIKHKLFTSVDKIAPASAILA-SNTS---SLSITEIASVT 101 (160)
Q Consensus 45 ~~~~~al~--~adlViEav~E~l~~K~~v~~~l~~~~~~~~iia-snTS---~l~i~~la~~~ 101 (160)
.++.++++ ++|+.|=+-.----.++++++.+.+++.+=.|++ ||-. -+...+.-.++
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t 157 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWT 157 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhh
Confidence 35555666 6666665443223456666666666665545554 4433 34555554444
No 222
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=21.90 E-value=2.1e+02 Score=23.10 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=26.9
Q ss_pred ceecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEee
Q psy3942 41 IKGSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILAS 87 (160)
Q Consensus 41 i~~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iias 87 (160)
....+++++.+.++|+|+||.+-+. . .++..++-+ ...+.++.|
T Consensus 49 ~~~~~~~~ell~~~DvVvi~a~~~~-~-~~~~~~al~-~Gk~Vvv~s 92 (265)
T PRK13304 49 AKACLSIDELVEDVDLVVECASVNA-V-EEVVPKSLE-NGKDVIIMS 92 (265)
T ss_pred CeeECCHHHHhcCCCEEEEcCChHH-H-HHHHHHHHH-cCCCEEEEc
Confidence 3456778665689999999987433 2 344333333 256666644
No 223
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=21.80 E-value=2.8e+02 Score=22.16 Aligned_cols=58 Identities=14% Similarity=0.215 Sum_probs=37.7
Q ss_pred CcEEeecCCCCCHHHHhcccC-CCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe
Q psy3942 82 SAILASNTSSLSITEIASVTN-RKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC 152 (160)
Q Consensus 82 ~~iiasnTS~l~i~~la~~~~-~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v 152 (160)
+.++..-|-++..+-++..+. ...+++++|+-+| ..+++-.+.+..+++.+|....++
T Consensus 13 ~~vlVa~SGGvDSs~ll~la~~~g~~v~av~~~~~-------------~~~~~e~~~a~~~a~~lgi~~~ii 71 (252)
T TIGR00268 13 KKVLIAYSGGVDSSLLAAVCSDAGTEVLAITVVSP-------------SISPRELEDAIIIAKEIGVNHEFV 71 (252)
T ss_pred CCEEEEecCcHHHHHHHHHHHHhCCCEEEEEecCC-------------CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 344454555666665554332 2467999998654 344667788999999999865554
No 224
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=21.71 E-value=1.7e+02 Score=24.03 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=29.3
Q ss_pred cCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecCCCCC
Q psy3942 44 SSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLS 93 (160)
Q Consensus 44 ~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnTS~l~ 93 (160)
.+++++.+.+.|+++||..-+ .++.=+.+-|++ +-|+|+.| +..+.
T Consensus 51 ~s~ide~~~~~DlvVEaAS~~-Av~e~~~~~L~~--g~d~iV~S-VGALa 96 (255)
T COG1712 51 VSDIDELIAEVDLVVEAASPE-AVREYVPKILKA--GIDVIVMS-VGALA 96 (255)
T ss_pred cccHHHHhhccceeeeeCCHH-HHHHHhHHHHhc--CCCEEEEe-chhcc
Confidence 478876679999999998532 233334444443 46777776 44555
No 225
>PF07386 DUF1499: Protein of unknown function (DUF1499); InterPro: IPR010865 This family consists of several hypothetical bacterial and plant proteins of around 125 residues in length. The function of this family is unknown.
Probab=21.54 E-value=2.2e+02 Score=20.09 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEecCcCccc
Q psy3942 127 TNDTSDATYNAVTEWGKSIGKTTIVCKDTPGFT 159 (160)
Q Consensus 127 ~~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfi 159 (160)
-..+.+++++.+.+.+..+|...++..+.+|++
T Consensus 32 ~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~l 64 (118)
T PF07386_consen 32 YPGSPEEAFAALEAAVEALPWTVVVDDQSDGYL 64 (118)
T ss_pred cCCCHHHHHHHHHHHHHHCCCcEEeccCCCCEE
Confidence 567888899999999999999888645666654
No 226
>KOG3843|consensus
Probab=21.40 E-value=1.6e+02 Score=25.03 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=27.2
Q ss_pred cEEEEeccCChHHHHHH--HHHHhhhCCCCcEEe--ecCCCCC
Q psy3942 55 DLVIEAIVENMDIKHKL--FTSVDKIAPASAILA--SNTSSLS 93 (160)
Q Consensus 55 dlViEav~E~l~~K~~v--~~~l~~~~~~~~iia--snTS~l~ 93 (160)
-+|||.|-|.=++..++ ...+-+...+|||++ |.||++.
T Consensus 127 piiie~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfa 169 (432)
T KOG3843|consen 127 PIIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFA 169 (432)
T ss_pred ceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccC
Confidence 47889988876665433 344444568999998 7788774
No 227
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=21.35 E-value=2.3e+02 Score=23.01 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=19.4
Q ss_pred eecCChhhhcCCCcEEEEeccCCh
Q psy3942 42 KGSSKVEDSVSQSDLVIEAIVENM 65 (160)
Q Consensus 42 ~~~~~~~~al~~adlViEav~E~l 65 (160)
...+++++.+.++|+|++|.|-+.
T Consensus 56 ~~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 56 PPVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred cccCCHHHHhcCCCEEEECCCcHH
Confidence 456778777789999999999765
No 228
>PLN02979 glycolate oxidase
Probab=20.70 E-value=2.5e+02 Score=24.38 Aligned_cols=62 Identities=23% Similarity=0.296 Sum_probs=41.3
Q ss_pred CCCcEEe-ecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcCc
Q psy3942 80 PASAILA-SNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVC-KDTPG 157 (160)
Q Consensus 80 ~~~~iia-snTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv~v-~d~pG 157 (160)
..+++.. |+-|+.|++++++.. |.. .||.+ |. .-+.+......+-+++.|-..+++ -|.|.
T Consensus 97 ~agi~~~lSt~ss~slEeIa~a~--~~~----~wfQL-Y~----------~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv 159 (366)
T PLN02979 97 AAGTIMTLSSWATSSVEEVASTG--PGI----RFFQL-YV----------YKNRNVVEQLVRRAERAGFKAIALTVDTPR 159 (366)
T ss_pred HcCCCeeeccCcCCCHHHHHhcc--CCC----eEEEE-ee----------cCCHHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence 3455444 666999999999763 221 33332 32 235667777788888899998887 78875
Q ss_pred c
Q psy3942 158 F 158 (160)
Q Consensus 158 f 158 (160)
+
T Consensus 160 ~ 160 (366)
T PLN02979 160 L 160 (366)
T ss_pred C
Confidence 4
No 229
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=20.61 E-value=3.4e+02 Score=21.93 Aligned_cols=79 Identities=11% Similarity=0.175 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCC-----CCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHH
Q psy3942 65 MDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNR-----KDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVT 139 (160)
Q Consensus 65 l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~-----p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~ 139 (160)
.+.|+++++..-+.++..+.+...+++.+..+.....++ -+-++-+ .| +.. ..|.++.++...
T Consensus 53 ~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~---~P-~~~--------~~s~~~l~~y~~ 120 (289)
T PF00701_consen 53 DEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVI---PP-YYF--------KPSQEELIDYFR 120 (289)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEE---ES-TSS--------SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEe---cc-ccc--------cchhhHHHHHHH
Confidence 456888888888888888877777777777754443321 1222222 22 222 357788888888
Q ss_pred HHHHHcCCeEEEecCcC
Q psy3942 140 EWGKSIGKTTIVCKDTP 156 (160)
Q Consensus 140 ~~~~~lgk~pv~v~d~p 156 (160)
+++... ..|+++.+.|
T Consensus 121 ~ia~~~-~~pi~iYn~P 136 (289)
T PF00701_consen 121 AIADAT-DLPIIIYNNP 136 (289)
T ss_dssp HHHHHS-SSEEEEEEBH
T ss_pred HHHhhc-CCCEEEEECC
Confidence 888554 4588887766
No 230
>PLN02306 hydroxypyruvate reductase
Probab=20.59 E-value=1.2e+02 Score=26.25 Aligned_cols=60 Identities=12% Similarity=0.142 Sum_probs=46.3
Q ss_pred ecCChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecC--CCCCHHHHhcccC
Q psy3942 43 GSSKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT--SSLSITEIASVTN 102 (160)
Q Consensus 43 ~~~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnT--S~l~i~~la~~~~ 102 (160)
...++++.++.+|+|+=+.|-+-+-+.-+=++.=+.++++++|..-+ .-+.-..|...+.
T Consensus 226 ~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 226 RASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK 287 (386)
T ss_pred ccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 34688888999999999999999888888777777889998887544 3445556666664
No 231
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=20.45 E-value=1e+02 Score=26.99 Aligned_cols=96 Identities=17% Similarity=0.222 Sum_probs=61.9
Q ss_pred cCceecCChhhhcCCCcEEEEeccCChHHHH-HHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEE-eecCCCC
Q psy3942 39 SRIKGSSKVEDSVSQSDLVIEAIVENMDIKH-KLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVG-LHFFNPV 116 (160)
Q Consensus 39 ~~i~~~~~~~~al~~adlViEav~E~l~~K~-~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig-~Hf~~P~ 116 (160)
+.|-.+.|+++++.-++ +-.||.|++-- +-..-++.+-..++|+.-+-|.-++.+-+++.+|=--.-| .+|+.+.
T Consensus 276 g~ii~~~~~~eai~~~N---~~APEHLel~~~~~~~~l~~i~nAGsiFlG~~tp~a~GDY~aGpNHvLPT~G~Ar~~sgL 352 (390)
T cd06572 276 GAIILVDDLEEAIELAN---EYAPEHLELQTEDPEELLEKIRNAGSIFLGPYTPEALGDYAAGPNHVLPTGGTARFYSGL 352 (390)
T ss_pred CEEEEECCHHHHHHHHH---hhchhhheeHhcCHHHHHhhCccceEEeecCCCchhhhccccCCCCccCCCcceeecCCC
Confidence 66778899976654444 45789998753 3455667777789999998888888888888775221122 2566665
Q ss_pred CCCceEEEecCCCCCHHHHHH
Q psy3942 117 PMMKLLEVIRTNDTSDATYNA 137 (160)
Q Consensus 117 ~~~~lVEvv~~~~T~~~~~~~ 137 (160)
....++..+.--+-+++.+..
T Consensus 353 ~v~~F~K~~s~~~~s~~~l~~ 373 (390)
T cd06572 353 SVDDFLKRITVQEYSKEGLRA 373 (390)
T ss_pred CHHHheecceeEEECHHHHHH
Confidence 555555544444444554443
No 232
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=20.44 E-value=4.2e+02 Score=20.61 Aligned_cols=58 Identities=9% Similarity=0.073 Sum_probs=35.7
Q ss_pred cCCCCcEEEeecCCCCCCCceEEEecC-CCCCHHHHHHHHHHHHHcCCeEEEe-cCcCccc
Q psy3942 101 TNRKDKFVGLHFFNPVPMMKLLEVIRT-NDTSDATYNAVTEWGKSIGKTTIVC-KDTPGFT 159 (160)
Q Consensus 101 ~~~p~r~ig~Hf~~P~~~~~lVEvv~~-~~T~~~~~~~~~~~~~~lgk~pv~v-~d~pGfi 159 (160)
..+..|+--|-=+.|.....+=...-= +-|+++... =.+.+-+-|+.|-+- .|.||||
T Consensus 47 ~sng~rv~cmqvw~~~~~kkfETfSYLPpLtdeqI~k-QVeYli~~GW~pclEf~~~~~~~ 106 (176)
T PLN02289 47 ASNGGRVSCMQVWPPIGKKKFETLSYLPDLTDEELAK-EVDYLLRNKWVPCLEFELEHGFV 106 (176)
T ss_pred ccCCceeEEEEeecccCccceeeeecCCCCCHHHHHH-HHHHHHhCCCeeeeeeccCCcee
Confidence 345667666766666544444333333 445555544 466778889999986 5677876
No 233
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=20.32 E-value=95 Score=20.31 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=28.3
Q ss_pred ChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecC
Q psy3942 46 KVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT 89 (160)
Q Consensus 46 ~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnT 89 (160)
+..+++.++|+|+=|++=.. =.+++.++ ....++.++.|-+
T Consensus 54 ~~~~~~~~advvilav~p~~--~~~v~~~i-~~~~~~~~vis~~ 94 (96)
T PF03807_consen 54 DNEEAAQEADVVILAVKPQQ--LPEVLSEI-PHLLKGKLVISIA 94 (96)
T ss_dssp EHHHHHHHTSEEEE-S-GGG--HHHHHHHH-HHHHTTSEEEEES
T ss_pred ChHHhhccCCEEEEEECHHH--HHHHHHHH-hhccCCCEEEEeC
Confidence 56678899999999986433 45688888 5566777777654
No 234
>PRK06932 glycerate dehydrogenase; Provisional
Probab=20.28 E-value=4.3e+02 Score=21.95 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=44.7
Q ss_pred CChhhhcCCCcEEEEeccCChHHHHHHHHHHhhhCCCCcEEeecC--CCCCHHHHhcccC
Q psy3942 45 SKVEDSVSQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNT--SSLSITEIASVTN 102 (160)
Q Consensus 45 ~~~~~al~~adlViEav~E~l~~K~~v~~~l~~~~~~~~iiasnT--S~l~i~~la~~~~ 102 (160)
.++++.++.||+|+=+.|-+-+-+.-+=++.=+.++++++|..-. .-+.-..|...++
T Consensus 189 ~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 189 TPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred CCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 367778999999999999999887777777777778988877444 4455567777765
No 235
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=20.24 E-value=3.3e+02 Score=23.37 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=38.2
Q ss_pred CcEEeecCCCCCHHHHhccc---CCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHHHHHHHHHHcCCeEE
Q psy3942 82 SAILASNTSSLSITEIASVT---NRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTI 150 (160)
Q Consensus 82 ~~iiasnTS~l~i~~la~~~---~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~lgk~pv 150 (160)
+--|.=|.|+++-.+|.... .+++++.++|=|.|-+. .+-|.+.+.+--+++++.|....
T Consensus 111 g~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~---------TGLs~~~f~~~n~~~k~~gi~~~ 173 (357)
T PF05913_consen 111 GIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPY---------TGLSEEFFIEKNQLLKEYGIKTA 173 (357)
T ss_dssp -SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT----------SB-HHHHHHHHHHHHHTT-EEE
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCC---------CCCCHHHHHHHHHHHHHCCCcEE
Confidence 57899999998777666544 46789999999999654 45688889999999999996443
No 236
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=20.23 E-value=2.5e+02 Score=25.48 Aligned_cols=62 Identities=8% Similarity=0.247 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHhhhCCCCcEEeecCCCCCHHHHhcccCCCCcEEEeecCCCCCCCceEEEecCCCCCHHHHH
Q psy3942 64 NMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTSDATYN 136 (160)
Q Consensus 64 ~l~~K~~v~~~l~~~~~~~~iiasnTS~l~i~~la~~~~~p~r~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~ 136 (160)
|...|.++|+-+.+++..+.-|.--|| ||-+.+..-+|++.|| ..+++-.+.+...+++.+-
T Consensus 433 DVGAK~eIy~li~~lA~~G~ail~iSS-----ElpEll~~~DRIlVm~------~Gri~~e~~~~~~tee~im 494 (500)
T COG1129 433 DVGAKAEIYRLIRELAAEGKAILMISS-----ELPELLGLSDRILVMR------EGRIVGELDREEATEEAIM 494 (500)
T ss_pred ccchHHHHHHHHHHHHHCCCEEEEEeC-----ChHHHHhhCCEEEEEE------CCEEEEEeccccCCHHHHH
Confidence 456899999999999988654443333 4445555568999997 5667777777656666544
No 237
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=20.21 E-value=2.2e+02 Score=21.90 Aligned_cols=38 Identities=5% Similarity=0.175 Sum_probs=23.8
Q ss_pred HHHHHHhhhCCCCcEEeecCCCCCHHHHhc--ccCCCCcEE
Q psy3942 70 KLFTSVDKIAPASAILASNTSSLSITEIAS--VTNRKDKFV 108 (160)
Q Consensus 70 ~v~~~l~~~~~~~~iiasnTS~l~i~~la~--~~~~p~r~i 108 (160)
.++++|.+.+++++++.+.+-+... -... ...+|.+++
T Consensus 3 ~~~~~l~~~l~~~~ivv~d~G~~~~-~~~~~~~~~~~~~~~ 42 (205)
T cd02003 3 EVLGALNEAIGDDDVVINAAGSLPG-DLHKLWRARTPGGYH 42 (205)
T ss_pred hHHHHHHHhCCCCCEEEECCCcchH-HHHHhCCcCCCCcEE
Confidence 5788899999999988877543322 2222 234566665
Done!