RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3942
         (160 letters)



>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit,
           middle domain {Pseudomonas fragi [TaxId: 296]}
          Length = 186

 Score = 95.4 bits (236), Expect = 6e-26
 Identities = 47/105 (44%), Positives = 62/105 (59%)

Query: 52  SQSDLVIEAIVENMDIKHKLFTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLH 111
              DLV+EA+VEN  +K  +   V+      AILASNTS++SI+ +A    R + FVG+H
Sbjct: 82  GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMH 141

Query: 112 FFNPVPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIVCKDTP 156
           FFNPV MM L+EVIR   +SD        + K +GK  IV  D P
Sbjct: 142 FFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIVVNDCP 186


>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA
           dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
          Length = 192

 Score = 92.7 bits (229), Expect = 8e-25
 Identities = 66/145 (45%), Positives = 97/145 (66%)

Query: 12  EKLIDSTLSRIKGSSKEEGEKLIDLTLSRIKGSSKVEDSVSQSDLVIEAIVENMDIKHKL 71
           E+ +     +    + + G++ ++ TLS I  S+     V  +DLV+EAIVEN+ +K++L
Sbjct: 48  EESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNEL 107

Query: 72  FTSVDKIAPASAILASNTSSLSITEIASVTNRKDKFVGLHFFNPVPMMKLLEVIRTNDTS 131
           F  +DK A    I ASNTSSL IT IA+ T R+D+F GLHFFNPVP+MKL+EVI+T  TS
Sbjct: 108 FKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTS 167

Query: 132 DATYNAVTEWGKSIGKTTIVCKDTP 156
             T+ ++ ++ K++GK  + CKDTP
Sbjct: 168 QKTFESLVDFSKALGKHPVSCKDTP 192


>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin
           hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii
           [TaxId: 2190]}
          Length = 242

 Score = 56.1 bits (135), Expect = 9e-11
 Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 8/156 (5%)

Query: 2   AAQAGNQEEGEKLIDSTLSRIKGSSKEEGEKLIDLTLSR---IKGSSKVEDSVSQSDLVI 58
           A  +GN E     I   +        +  +  I L       +K +S   ++V  +D+VI
Sbjct: 87  AHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIVI 146

Query: 59  EAIVENMDIKHKLFTSVDKIAPASAIL--ASNTSSLSITEIASVTNRKD-KFVGLHFFNP 115
              +   + +  +        P  AI+  A    +    +I     R+D      H    
Sbjct: 147 TW-LPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGCV 205

Query: 116 VPMMKLLEVIRTNDTSDATYNAVTEWGKSIGKTTIV 151
             M   + +      S+   N + E GK        
Sbjct: 206 PEMKGQVYIAE-GYASEEAVNKLYEIGKIARGKAFK 240


>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA,
           C-terminal domain {Synechococcus elongatus PCC 7942
           [TaxId: 1140]}
          Length = 106

 Score = 25.4 bits (56), Expect = 1.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 98  ASVTNRKDKFVGLHFFNPVPMMKLLEV 124
           +++    D FV + FF  VP+ K++E+
Sbjct: 34  SNLNQSIDNFVNMAFFADVPVTKVVEI 60


>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
           domain {Thermosynechococcus elongatus bp-1 [TaxId:
           197221]}
          Length = 106

 Score = 25.4 bits (56), Expect = 2.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 98  ASVTNRKDKFVGLHFFNPVPMMKLLEV 124
           A V  R D+FV   FF  + + ++LE+
Sbjct: 37  AKVNERIDEFVSKAFFADISVSQVLEI 63


>d1r5qa_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
           domain {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId:
           103690]}
          Length = 98

 Score = 25.1 bits (55), Expect = 2.4
 Identities = 6/27 (22%), Positives = 16/27 (59%)

Query: 98  ASVTNRKDKFVGLHFFNPVPMMKLLEV 124
            ++  + DKF+   F   +P+ +++E+
Sbjct: 27  KALKEKIDKFINAVFCANIPVPEIIEI 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.127    0.338 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 510,600
Number of extensions: 20722
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 10
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (22.8 bits)