BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3946
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+ CPV +C+R +SR L+RH R GQ P F C +C R D L +H++
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIR 55
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
FQC + C R +SR L+ H R G+ P F C +C K R D K H K
Sbjct: 35 FQCRI--CMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTK 83
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+ CPV +C+R +SR L+RH R GQ P F C +C R D L +H++
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIR 55
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
FQC + C R +SR L+ H R G+ P F C +C K R D K H K
Sbjct: 35 FQCRI--CMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTK 83
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+ CPV +C+R +SR L+RH R GQ P F C +C R D L +H++
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIR 70
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+ CPV +C+R +SR L+RH R GQ P F C +C R D L +H++
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIR 55
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
FQC + C R +SR L+ H R G+ P F C +C K R D K H K
Sbjct: 35 FQCRI--CMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTK 83
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+ CPV +C+R +S+ SL+RH R GQ P F C +C R D L +H++
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIR 55
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
FQC + C R +SR L+ H R G+ P F C +C K R D K H K
Sbjct: 35 FQCRI--CMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTK 83
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+ CPV +C+R +SR L+RH R GQ P F C +C R D L +H++
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIR 54
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
FQC + C R +SR L+ H R G+ P F C +C K R D K H K
Sbjct: 34 FQCRI--CMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTK 82
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+ CPV +C+R +SR L+RH R GQ P F C +C R D L +H++
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIR 55
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
FQC + C R +SR L+ H R G+ P F C +C K R D K H K
Sbjct: 35 FQCRI--CMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTK 83
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+ CPV +C+R +S +L+RH R GQ P F C +C R D L +H++
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIR 55
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
FQC + C R +SR L+ H R G+ P F C +C K R D K H K
Sbjct: 35 FQCRI--CMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHTK 83
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+QC +C R +SR L RH++ + F C C K R D LK+H +
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR 87
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSL--CPYKSKRRDLLKSHMK 102
F C P CN+ Y + L H R+ G+ P + C C + R D LK H +
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQR 59
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
++C C+ ++R L+RH R+ G P F C +C R D L HMK
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHMK 96
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 51 VFQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSL--CPYKSKRRDLLKSHMK 102
+ C P C +VY++ L H R G+ P + C+ C ++ R D L H +
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGCDWRFARSDELTRHYR 68
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+ CPV +C+R +S++ +L H R GQ P F C +C ++ L +H++
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQQASLNAHIR 55
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+ CPV +C+R +S++ +L H R GQ P F C +C + L H++
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQHTGLNQHIR 55
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGHKLEHI 110
FQC + C R +SR L+ H R G+ P F C +C K R D K H H L I
Sbjct: 4 FQCRI--CMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDIQHILP-I 59
Query: 111 TEDQI 115
ED++
Sbjct: 60 LEDKV 64
>pdb|3MV7|D Chain D, Crystal Structure Of The Tk3 Tcr In Complex With
Hla-B3501HPVG
pdb|3MV8|D Chain D, Crystal Structure Of The Tk3-Gln55his Tcr In Complex With
Hla- B3501HPVG
pdb|3MV9|D Chain D, Crystal Structure Of The Tk3-Gln55ala Tcr In Complex With
Hla- B3501HPVG
Length = 200
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 58 NCNRVYSRRRSLSRHRQECGQLPRFHCSL-CPYKSKRRDLLKSHMKHGHKLEHIT 111
NC+ S R L +RQ+ G+ P F +L + K ++ LK+ + HIT
Sbjct: 20 NCSYTVSGLRGLFWYRQDPGKGPEFLFTLYSAGEEKEKERLKATLTKKESFLHIT 74
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+ C C ++R L+RH R+ G P F C C R D L HMK
Sbjct: 37 YHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDHLALHMK 87
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 49 TGVFQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSL--CPYKSKRRDLLKSHMK 102
T C C + Y++ L H R G+ P +HC C +K R D L H +
Sbjct: 4 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYR 59
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+ C C ++R L+RH R+ G P F C C R D L HMK
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDHLALHMK 86
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 49 TGVFQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSL--CPYKSKRRDLLKSHMK 102
T C C + Y++ L H R G+ P +HC C +K R D L H +
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYR 58
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGH 105
F C V C R ++R+ L RH + + C LC RRDLL H + H
Sbjct: 3 FVCEV--CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|3LNR|A Chain A, Crystal Structure Of Poly-Hamp Domains From The P.
Aeruginosa Soluble Receptor Aer2
Length = 175
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 48 DTGVFQCPVPNCNRVYSRRRSLSR----HRQECGQLPRFHCSLC 87
DT V + P P R+Y R+L R R E Q+ L
Sbjct: 33 DTAVGEAPAPGYERLYDSLRALQRQLREQRAELQQVESLEAGLA 76
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHRQ 74
FQC P+C+R +SR L+ HR+
Sbjct: 8 FQCTWPDCDRSFSRSDHLALHRK 30
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSL 86
F CP P C ++++R +L H R G+ P F C
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKP-FKCEF 125
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 82 FHCSLCPYKSKRRDLLKSHM 101
F CSLC Y ++ + LK+HM
Sbjct: 10 FKCSLCEYATRSKSNLKAHM 29
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHRQ 74
F C P C +SR LSRHR+
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRR 35
>pdb|2AB3|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
Rna Targeting Zinc Finger Proteins
Length = 29
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 51 VFQCPVPNCNRVYSRRRSLSRHRQ 74
V+ C NC R ++ RR L+RH++
Sbjct: 2 VYVCHFENCGRSFNDRRKLNRHKK 25
>pdb|2AB7|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
Rna Targeting Zinc Finger Proteins
Length = 29
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 51 VFQCPVPNCNRVYSRRRSLSRHRQ 74
V+ C NC R ++ RR L+RH++
Sbjct: 2 VYVCHFENCGRSFNDRRKLNRHKK 25
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 54 CPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDL-LKSHMKHGHKLEHITE 112
C P C R++S R+ L+ H++ Q CP + + K H+K KL T
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKY--QHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 113 DQIIVRKDP 121
D I P
Sbjct: 68 DYICEFSGP 76
>pdb|1ULI|A Chain A, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|C Chain C, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULI|E Chain E, Biphenyl Dioxygenase (bpha1a2) Derived From Rhodococcus
Sp. Strain Rha1
pdb|1ULJ|A Chain A, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|C Chain C, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
pdb|1ULJ|E Chain E, Biphenyl Dioxygenase (Bpha1a2) In Complex With The
Substrate
Length = 460
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 4 ISRVSIQNPTPSNGLSEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQ 53
I+ + +P N + +V+D + E M + Y + + F+ GVF+
Sbjct: 326 INTIRAWHPRGPNEIEVWAFTVVDADAPEEMKEEYRQQTLRTFSAGGVFE 375
>pdb|2XSH|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSH|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400 In Complex With 2,6
Di Chlorobiphenyl
pdb|2XSO|A Chain A, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|C Chain C, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|E Chain E, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|G Chain G, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|I Chain I, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|K Chain K, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|M Chain M, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|O Chain O, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|Q Chain Q, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|S Chain S, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|U Chain U, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
pdb|2XSO|W Chain W, Crystal Structure Of P4 Variant Of Biphenyl Dioxygenase
From Burkholderia Xenovorans Lb400
Length = 459
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 1 MAKISRVSIQNPTPSNGLSEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQ 53
+ ++ + I +P N + +++D + + + Y R+ +NF+ GVF+
Sbjct: 333 LPAMNNIRIWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFE 385
>pdb|2YFI|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFI|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
(Bpdo-Rr41)
pdb|2YFJ|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFJ|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With Dibenzofuran
pdb|2YFL|A Chain A, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|C Chain C, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|E Chain E, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|G Chain G, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|I Chain I, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
pdb|2YFL|K Chain K, Crystal Structure Of Biphenyl Dioxygenase Variant Rr41
With 2-Chloro Dibenzofuran
Length = 459
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 28/53 (52%)
Query: 1 MAKISRVSIQNPTPSNGLSEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQ 53
+ ++++ + +P N + +++D + + + Y R+ +NF+ GVF+
Sbjct: 333 LPAMNQIRVWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFE 385
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
Query: 47 NDTGV--FQCPVPNCNRVYSRRRSLSRHRQ 74
TG+ FQCP +C+R +SR L+ HR+
Sbjct: 5 GSTGIKPFQCP--DCDRSFSRSDHLALHRK 32
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 56 VPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
P C + +SR +L H R G+ P + C C RRD L H +
Sbjct: 136 CPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVHQR 182
>pdb|2XR8|A Chain A, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|C Chain C, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|E Chain E, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|G Chain G, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|I Chain I, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|K Chain K, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|M Chain M, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|O Chain O, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|S Chain S, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|U Chain U, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XR8|W Chain W, Crystal Structure Of Biphenyl Dioxygenase From
Burkholderia Xenovorans Lb400
pdb|2XRX|A Chain A, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|C Chain C, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|E Chain E, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|G Chain G, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|I Chain I, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|K Chain K, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|M Chain M, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|O Chain O, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|Q Chain Q, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|S Chain S, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|U Chain U, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
pdb|2XRX|W Chain W, Crystal Structure Of Biphenyl Dioxygenase In Complex With
Biphenyl From Burkholderia Xenovorans Lb400
Length = 459
Score = 25.4 bits (54), Expect = 9.7, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 1 MAKISRVSIQNPTPSNGLSEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQ 53
+ + + I +P N + +++D + + + Y R+ +NF+ GVF+
Sbjct: 333 LPTFNNIRIWHPRGPNEIEVWAFTLVDADAPAEIKEEYRRHNIRNFSAGGVFE 385
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 9 IQNPTPSNGLSEEVLSVLDFEKEERMNDVYNRNMKKNFN 47
+QN T EE + LD + + DVYN + +KN N
Sbjct: 355 VQNITGDYWTVEETRAKLDKKMTKAFWDVYNTHKEKNIN 393
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,804,121
Number of Sequences: 62578
Number of extensions: 139769
Number of successful extensions: 414
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 78
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)