RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3946
(127 letters)
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 39.7 bits (92), Expect = 1e-04
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 19/77 (24%)
Query: 48 DTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFH-------------------CSLCP 88
D ++CPV CN+ Y + L H Q + H C +C
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCD 405
Query: 89 YKSKRRDLLKSHMKHGH 105
+ K + LK H KH H
Sbjct: 406 KRYKNLNGLKYHRKHSH 422
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals.Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in(1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles.This model is specific for the
eukaryotic members members of this family [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 559
Score = 30.9 bits (70), Expect = 0.13
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 11 NPTPSNGLSEEVLSVLDFEKEERMNDVYNRNMKK 44
NP PSN SE ++ L E +E + D+ N+ K
Sbjct: 509 NPEPSN--SEPIIPALSSEDKEEIRDILGTNLYK 540
>gnl|CDD|234843 PRK00811, PRK00811, spermidine synthase; Provisional.
Length = 283
Score = 29.0 bits (66), Expect = 0.51
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 31 EERMNDVYNRNMKKNFNDTGVFQCPVP 57
+ + D++ R +K+ F +Q +P
Sbjct: 198 ADEIKDMH-RKLKEVFPIVRPYQAAIP 223
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional.
Length = 410
Score = 29.1 bits (65), Expect = 0.62
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 1 MAKISR--VSIQNPTPSNGLSEEVLSVLD---FEKEERMNDV---YNRNMKKNFNDTGVF 52
M SR + + NPTP + E ++ +K R +D+ +NR++ K D GV
Sbjct: 24 MTSASRAFMDLYNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVM 83
Query: 53 QCPVP 57
VP
Sbjct: 84 GVTVP 88
>gnl|CDD|233836 TIGR02363, dhaK1, dihydroxyacetone kinase, DhaK subunit. Two types
of dihydroxyacetone kinase (glycerone kinase) are
described. In yeast and a few bacteria, e.g. Citrobacter
freundii, the enzyme is a single chain that uses ATP as
phosphoryl donor and is designated EC 2.7.1.29. By
contract, E. coli and many other bacterial species have
a multisubunit form (EC 2.7.1.-) with a phosphoprotein
donor related to PTS transport proteins. This family
represents the DhaK subunit of the latter type of
dihydroxyacetone kinase, but it specifically excludes
the DhaK paralog DhaK2 (TIGR02362) found in the same
operon as DhaK and DhaK in the Firmicutes.
Length = 329
Score = 28.9 bits (65), Expect = 0.71
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 103 HGHKLEHITEDQIIVRKDPPV 123
H + + + ++IVRKD V
Sbjct: 23 HPELVTLVADTRVIVRKDKKV 43
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 26.3 bits (58), Expect = 0.90
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 82 FHCSLCPYKSKRRDLLKSHMK 102
+ C C K + L+ HM+
Sbjct: 1 YRCPECGKVFKSKSALREHMR 21
>gnl|CDD|191952 pfam08155, NOGCT, NOGCT (NUC087) domain. This C terminal domain
is found in the NOG subfamily of nucleolar GTP-binding
proteins.
Length = 55
Score = 26.5 bits (59), Expect = 0.99
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 27 DFEKEERMNDVYNRNMKKNF 46
D E+E VY+ +++KN+
Sbjct: 7 DLEEENGGAGVYSVDLRKNY 26
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 25.3 bits (55), Expect = 2.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 82 FHCSLCPYKSKRRDLLKSHMKHGH 105
F C LC +D LK H++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKHH 24
Score = 24.1 bits (52), Expect = 5.8
Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHRQEC 76
F+CP+ C + +S + +L RH ++
Sbjct: 1 FKCPL--CGKSFSSKDALKRHLRKH 23
>gnl|CDD|214763 smart00647, IBR, In Between Ring fingers. the domains occurs
between pairs og RING fingers.
Length = 64
Score = 25.5 bits (56), Expect = 2.9
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 8/41 (19%)
Query: 47 NDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLC 87
++ + CP P+C+ E R C C
Sbjct: 14 SNPDLKWCPAPDCSAAII--------VTEEEGCNRVTCPKC 46
>gnl|CDD|222450 pfam13909, zf-H2C2_5, C2H2-type zinc-finger domain.
Length = 24
Score = 24.5 bits (54), Expect = 3.1
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 82 FHCSLCPYKSKRRDLLKSHMK 102
+ CS CPY S + L + H+K
Sbjct: 1 YKCSHCPYSSTPKKLER-HLK 20
>gnl|CDD|215890 pfam00386, C1q, C1q domain. C1q is a subunit of the C1 enzyme
complex that activates the serum complement system.
Length = 125
Score = 26.1 bits (58), Expect = 3.5
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 41 NMKKNFND-TGVFQCPVP 57
N+ +++ TG F CPVP
Sbjct: 26 NIGGHYDPATGKFTCPVP 43
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 26.1 bits (58), Expect = 3.6
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 83 HCSLCPYKSKRRDLLKSHMKHGHKL 107
C C + S + HM H
Sbjct: 1 DCLFCNHTSDTVEENLEHMFKSHGF 25
>gnl|CDD|215203 PLN02355, PLN02355, probable galactinol--sucrose
galactosyltransferase 1.
Length = 758
Score = 26.8 bits (59), Expect = 4.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 41 NMKKNFNDTGVFQCPVPNCNRVYSRRRS 68
++ +NF D G+ C N + +YS +R+
Sbjct: 423 SIARNFPDNGIISCMSHNTDGLYSAKRT 450
>gnl|CDD|220661 pfam10263, SprT-like, SprT-like family. This family represents a
domain found in eukaryotes and prokaryotes. The domain
contains a characteristic motif of the zinc
metallopeptidases. This family includes the bacterial
SprT protein.
Length = 153
Score = 26.2 bits (58), Expect = 4.5
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 57 PNCNRVYSRRRSLSRHRQECGQ 78
+C ++Y R+R + RH+ CG+
Sbjct: 123 GSCGQLYPRKRRIRRHKYRCGR 144
>gnl|CDD|191151 pfam04988, AKAP95, A-kinase anchoring protein 95 (AKAP95).
A-kinase (or PKA)-anchoring protein AKAP95 is implicated
in mitotic chromosome condensation by acting as a
targeting molecule for the condensin complex. The
protein contains two zinc fingers which are thought to
mediate the binding of AKAP95 to DNA.
Length = 165
Score = 26.2 bits (58), Expect = 4.8
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 82 FHCSLCPYKSKRRDLLKSHMKHGHKLEHI 110
F CS C +++ ++ H++ E +
Sbjct: 1 FTCSFCKFRTFYEKEIEQHLRSKFHKETL 29
>gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component
regulatory system with EvgA; Provisional.
Length = 1197
Score = 26.2 bits (57), Expect = 6.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 85 SLCPYKSKRRDLLKSHMKHGHKLEHI 110
+LC +K D+LK+H+ H++ HI
Sbjct: 1054 NLCLFKPLTLDVLKTHLSQLHQVAHI 1079
>gnl|CDD|218404 pfam05056, DUF674, Protein of unknown function (DUF674). This
family is found in Arabidopsis thaliana and contains
several uncharacterized proteins.
Length = 462
Score = 25.9 bits (57), Expect = 6.3
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 35 NDVYNRNMKKNFNDT---GVFQCPV----PNCNRVYSRRRSLSRHRQECGQL 79
+ RN+K N +DT F CP +C YS + + R CG L
Sbjct: 96 KEEQCRNLKLNIDDTEATKYFVCPKFVQSESCREFYS---NFNTSRCRCGNL 144
>gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide
binding). The alpha subunit of G proteins contains the
guanine nucleotide binding site. The heterotrimeric
GNP-binding proteins are signal transducers that
communicate signals from many hormones,
neurotransmitters, chemokines, and autocrine and
paracrine factors. Extracellular signals are received by
receptors, which activate the G proteins, which in turn
route the signals to several distinct intracellular
signaling pathways. The alpha subunit of G proteins is a
weak GTPase. In the resting state, heterotrimeric G
proteins are associated at the cytosolic face of the
plasma membrane and the alpha subunit binds to GDP. Upon
activation by a receptor GDP is replaced with GTP, and
the G-alpha/GTP complex dissociates from the beta and
gamma subunits. This results in activation of downstream
signaling pathways, such as cAMP synthesis by adenylyl
cyclase, which is terminated when GTP is hydrolized and
the heterotrimers reconstitute.
Length = 315
Score = 26.0 bits (58), Expect = 6.6
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 4 ISRVSIQNPTPSN-GLSEEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRV 62
+ ++I P N ++++LS+ +E + +K+ + D G+ C
Sbjct: 55 METLNIPYGDPENEKDAKKILSLAPRAEEGPLPPELAEAIKRLWKDPGIQAC-------- 106
Query: 63 YSRRR 67
Y RR
Sbjct: 107 YDRRN 111
>gnl|CDD|176748 cd08337, DED_c-FLIP_repeat1, Death Effector Domain, repeat 1, of
cellular FLICE-Inhibitory Protein. Death Effector
Domain (DED), repeat 1, similar to that found in
FLICE-inhibitory protein (c-FLIP/CASH, also known as
Casper/iFLICE/FLAME-1/CLARP/MRIT/usurpin). c-FLIP is a
catalytically inactive homolog of the initator
procaspases-8 and -10. It negatively influences
apoptotic signaling by interfering with the efficient
formation of the Death Inducing Signalling Complex
(DISC). At low levels, c-FLIP has been shown to enhance
apoptotic signaling by allosterically activating
caspase-8. As a modulator of the initiator caspases,
c-FLIP regulates life and death in various types of
cells and tissues. All members contain two N-terminal
DEDs and a C-terminal pseudo-caspase domain. DEDs
comprise a subfamily of the Death Domain (DD)
superfamily. DDs are protein-protein interaction domains
found in a variety of domain architectures. Their common
feature is that they form homodimers by self-association
or heterodimers by associating with other members of the
DD superfamily including PYRIN and CARD (Caspase
activation and recruitment domain). They serve as
adaptors in signaling pathways and can recruit other
proteins into signaling complexes.
Length = 80
Score = 24.7 bits (54), Expect = 8.1
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 51 VFQCPV--PNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+F C P+C + R L R E G+L + Y+ KR DLLK +
Sbjct: 22 LFLCRDAAPDCTTA--QLRDLLRALNERGKLTLAALAELLYRVKRFDLLKRILH 73
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this
family (Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 24.9 bits (55), Expect = 9.6
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 8/48 (16%)
Query: 1 MAKISRVSIQNPTPSNGLSEEVLSVLDFEKEERMNDVYNRNMKKNFND 48
+ KI +V+ GL LS D + + ++ M K F D
Sbjct: 30 LEKIKKVA--------GLRGADLSEEDLADGDFDPEKWDEEMAKLFGD 69
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.406
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,350,760
Number of extensions: 529446
Number of successful extensions: 510
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 47
Length of query: 127
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 42
Effective length of database: 7,167,512
Effective search space: 301035504
Effective search space used: 301035504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)