RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3946
(127 letters)
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 40.4 bits (95), Expect = 7e-06
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+ CPV +C+R +SR L+RH R GQ P F C +C R D L +H++
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIR 70
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 38.0 bits (89), Expect = 7e-05
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGH 105
++CP C++ +S L RH + G C + K L H+ H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 36.8 bits (86), Expect = 2e-04
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
++C C+ ++R L+RH R+ G P F C +C R D L HMK
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHMK 96
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 35.8 bits (83), Expect = 4e-04
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHR----QECGQLPRFHCSLCPYKSKRRDLLKSHMKHGH 105
QC + C ++ SL+ H+ + L F C C + ++ D + +H H
Sbjct: 8 LQCEI--CGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSH 62
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 33.9 bits (78), Expect = 0.002
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSL--CPYKSKRRDLLKSHMK 102
C P C + Y + L H R G+ P F CS C + R D L H +
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFARSDELSRHRR 70
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 33.3 bits (77), Expect = 0.004
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+ C C ++R L+RH R+ G P F C C R D L HMK
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDHLALHMK 86
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 32.5 bits (75), Expect = 0.005
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHRQEC---GQLPRFHCSLCPYKSKRRDLLKSHMKHGHKL 107
++C V C+RVY+ + RH + C C + R+D + +H+K HK+
Sbjct: 11 YRCKV--CSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVKIIHKI 66
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 30.2 bits (68), Expect = 0.030
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 50 GVFQCPVPNCNRVYSRRRSLSRHRQ 74
F+C P C + + RR ++ H Q
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQ 41
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 30.2 bits (69), Expect = 0.039
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPR-FHCSLCPYKSKRRDLLKSHMKHGH 105
++C + C+ +++ ++ H Q+ + FHC C R+ L H++ H
Sbjct: 16 YECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 29.2 bits (66), Expect = 0.055
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCS 85
F C P C +SR LSRH R G P S
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKP-SGPS 46
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 29.9 bits (66), Expect = 0.10
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 43 KKNFNDTGVFQCPVPNCNRVYSRR-RSLSRHRQECGQL-PRFHCSLCPYKSKRRDLLKSH 100
++ ++ G CP CN V + L +H + C +L C C + K + L H
Sbjct: 16 QRAIHERGEAVCP--TCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYH 73
Query: 101 MKHGHKLEHITEDQ 114
H + +
Sbjct: 74 TMAEHSAKPSDAEA 87
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 28.0 bits (63), Expect = 0.14
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHR 73
F C C + ++R L RH+
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHK 24
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.16
Identities = 9/37 (24%), Positives = 11/37 (29%), Gaps = 12/37 (32%)
Query: 20 EEVLSVLDFEKEERMNDVYNRNMKKNFNDTGVFQCPV 56
E L VL +V N FN C +
Sbjct: 244 ENCLLVLL--------NVQNAKAWNAFN----LSCKI 268
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 29.1 bits (64), Expect = 0.22
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 49 TGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGH 105
F CP+ C +S SL +H + C +C + D H+ H
Sbjct: 72 ISQFVCPL--CLMPFSSSVSLKQHIRYTEH--TKVCPVCKKEFTSTDSALDHVCKKH 124
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 28.4 bits (63), Expect = 0.31
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 9/64 (14%)
Query: 47 NDTGVFQCPVPNCNRVYSRRRSLSRH---------RQECGQLPRFHCSLCPYKSKRRDLL 97
D P +C+R +S L H Q C K + L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 98 KSHM 101
+H+
Sbjct: 79 VNHI 82
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 27.8 bits (61), Expect = 0.45
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 6/71 (8%)
Query: 39 NRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQEC----GQLPRFHCSLCPYKSKRR 94
+ + ++N G ++C C + H + C C + +KR
Sbjct: 6 HHHNQQNKKVEGGYECK--YCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 95 DLLKSHMKHGH 105
D L H H
Sbjct: 64 DALSEHNLKYH 74
Score = 27.4 bits (60), Expect = 0.62
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 64 SRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMKHGH 105
+ + E G + C C +++ ++ H+ H
Sbjct: 5 HHHHNQQNKKVEGG----YECKYCTFQTPDLNMFTFHVDSEH 42
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.5 bits (60), Expect = 0.62
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 43 KKNFNDTGVFQCPVPNCNRV-YSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHM 101
D G CP C V L +H + C Q F C C + + +K H+
Sbjct: 26 YLEIVDKGSVSCP--TCQAVGRKTIEGLKKHMENCKQ-EMFTCHHCGKQLRSLAGMKYHV 82
Query: 102 KHGH 105
H
Sbjct: 83 MANH 86
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 26.2 bits (58), Expect = 0.69
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 51 VFQCPVPNCNRVYSRRRSLSRHR 73
C + C +VY + L H
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHL 30
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 26.7 bits (60), Expect = 0.83
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHR 73
C P C R++S R+ L+ H+
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHK 29
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 27.6 bits (62), Expect = 0.88
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHR 73
F CP P C ++++R +L H+
Sbjct: 91 FPCPFPGCGKIFARSENLKIHK 112
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 27.2 bits (59), Expect = 0.88
Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 39 NRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLK 98
+ + V+QC + CN S H + C C C + +L +
Sbjct: 4 GSSGASPVENKEVYQCRL--CNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQ 59
Query: 99 SHMKH 103
H
Sbjct: 60 EHESK 64
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 25.6 bits (56), Expect = 1.1
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHRQEC 76
+ C + CNR ++RR L RH Q+
Sbjct: 3 YACGL--CNRAFTRRDLLIRHAQKI 25
Score = 25.6 bits (56), Expect = 1.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 82 FHCSLCPYKSKRRDLLKSHMKHGHK 106
+ C LC RRDLL H + H
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHS 27
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 25.4 bits (55), Expect = 1.2
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHRQ 74
+ C P C++ + R L RH++
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKK 26
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA
binding protein; NMR {Escherichia coli} SCOP: k.12.1.1
PDB: 2ab7_A
Length = 29
Score = 25.4 bits (55), Expect = 1.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 51 VFQCPVPNCNRVYSRRRSLSRHRQ 74
V+ C NC R ++ RR L+RH++
Sbjct: 2 VYVCHFENCGRSFNDRRKLNRHKK 25
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 25.6 bits (57), Expect = 3.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH 72
+C C + YSR +L H
Sbjct: 68 HKCTFEGCRKSYSRLENLKTH 88
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 25.1 bits (56), Expect = 3.5
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSK---RRDLLKSHMK 102
+ CPV +C+R +S+ SL+RH R GQ P F C +C + R D L +H++
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRIC---MRNFSRSDHLTTHIR 55
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.1 bits (51), Expect = 3.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 82 FHCSLCPYKSKRRDLLKSHM 101
F CSLC Y ++ + LK+HM
Sbjct: 10 FKCSLCEYATRSKSNLKAHM 29
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 24.8 bits (55), Expect = 3.5
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHRQ-----ECGQ 78
+ C + CNR ++RR L RH Q G+
Sbjct: 31 YPCGL--CNRAFTRRDLLIRHAQKIHSGNLGE 60
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 24.2 bits (53), Expect = 3.9
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 81 RFHCSLCPYKSKRRDLLKSHMK 102
F C C R D L H K
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRK 32
Score = 23.4 bits (51), Expect = 5.9
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 49 TGV--FQCPVPNCNRVYSRRRSLSRHR 73
TG+ FQCP C+R +SR L+ HR
Sbjct: 7 TGIKPFQCPD--CDRSFSRSDHLALHR 31
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 26.0 bits (58), Expect = 4.6
Identities = 7/25 (28%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 32 ERMNDVYNRNMKKN----FNDTGVF 52
+R+N++Y +N+ K+ + T F
Sbjct: 89 QRLNNIYRQNLSKDKVDLYEGTASF 113
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside
hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ;
1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A*
2jjb_A* 2wyn_A*
Length = 535
Score = 25.6 bits (55), Expect = 5.4
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 40 RNMKKNFNDTGVFQCPVPNCNRVYSRRRS 68
+M NF +PN NR Y RS
Sbjct: 148 ADMVANFAHEIDTYGHIPNGNRSYYLSRS 176
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 23.6 bits (50), Expect = 6.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 82 FHCSLCPYKSKRRDLLKSHMKHGH 105
++CS C Y S ++ LK H+ H
Sbjct: 10 YYCSQCHYSSITKNCLKRHVIQKH 33
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 24.0 bits (51), Expect = 6.4
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 82 FHCSLCPYKSKRRDLLKSHMKHGHKLEHITEDQIIVRKDPP 122
+ C +C + K R L H H H E ED+ + P
Sbjct: 8 YACDICGKRYKNRPGLSYHYAHSHLAEEEGEDKEDSQPPTP 48
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 23.9 bits (51), Expect = 6.8
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 59 CNRVYSRRRSLSRH-RQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
C + L +H R P +HC+ C + K + L HMK
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMK 50
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 24.7 bits (53), Expect = 8.1
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 64 SRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHM-KHGHKLEHITED 113
R+RSL + C C + + L HM K H +
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPS 113
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 22.9 bits (48), Expect = 8.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 82 FHCSLCPYKSKRRDLLKSHMKHGHKLE 108
+ C C ++S LK+H+K H E
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHSKE 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.406
Gapped
Lambda K H
0.267 0.0559 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,933,503
Number of extensions: 101543
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 94
Length of query: 127
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 44
Effective length of database: 4,384,350
Effective search space: 192911400
Effective search space used: 192911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)