RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3946
(127 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 33.9 bits (77), Expect = 4e-04
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYKSKRRDLLKSHMK 102
+ C C + ++ + RH L + C +C K K + L HMK
Sbjct: 4 YPC---QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 28.9 bits (65), Expect = 0.023
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHR 73
+ CP CN+ +++ +L H
Sbjct: 3 YVCPFDGCNKKFAQSTNLKSHI 24
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 27.7 bits (62), Expect = 0.063
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHR 73
+ C P C++ + R L RH+
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHK 25
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 27.0 bits (60), Expect = 0.11
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHCSLCPYK 90
F CP P C + ++ ++ L H + H Y
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHM-------KLHSDTRDYI 33
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 26.1 bits (58), Expect = 0.23
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHR 73
+ CPV +C+R +SR L+RH
Sbjct: 3 YACPVESCDRRFSRSADLTRHI 24
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 25.8 bits (57), Expect = 0.34
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHR 73
+C C + YSR +L H
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHL 24
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 25.4 bits (56), Expect = 0.42
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHR 73
F C C + ++R L RH+
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHK 24
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 25.2 bits (55), Expect = 0.45
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 82 FHCSLCPYKSKRRDLLKSHMKHGHKL 107
+ C LC RRDLL ++H K+
Sbjct: 2 YPCGLCNRAFTRRDLL---IRHAQKI 24
Score = 25.2 bits (55), Expect = 0.50
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 52 FQCPVPNCNRVYSRRRSLSRHRQ 74
+ C + CNR ++RR L RH Q
Sbjct: 2 YPCGL--CNRAFTRRDLLIRHAQ 22
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 25.0 bits (54), Expect = 0.68
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 82 FHCSLCPYKSKRRDLLKSHMKHGH 105
F C+ C + +K+ L HMK H
Sbjct: 3 FKCNYCSFDTKQPSNLSKHMKKFH 26
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 24.0 bits (52), Expect = 1.1
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH 72
+ C +P C + Y+ SL +H
Sbjct: 3 YVCKLPGCTKRYTDPSSLRKH 23
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 23.9 bits (52), Expect = 1.3
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 52 FQCPVPNCNRVYSRRRSLSRH 72
FQC C + +S +L H
Sbjct: 3 FQCTFEGCGKRFSLDFNLRTH 23
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 23.9 bits (51), Expect = 1.5
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 59 CNRVYSRRRSLSRHRQEC 76
C + ++RR +++RH C
Sbjct: 10 CGKTFTRRNTMARHADNC 27
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 23.4 bits (51), Expect = 2.1
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 82 FHCSLCPYKSKRRDLLKSHMKHGH 105
+ C C R D L H+K H
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVH 29
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 23.6 bits (50), Expect = 2.3
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 82 FHCSLCPYKSKRRDLLKSHMKHGHKLE 108
+ C C ++S LK+H+K H E
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHSKE 29
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 23.3 bits (50), Expect = 2.8
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 47 NDTGVFQCPVPNCNRVYSRRRSLSRHRQ 74
+D F C P C + ++ L+ H+
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHKH 29
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 22.7 bits (48), Expect = 4.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 54 CPVPNCNRVYSRRRSLSRHRQ 74
C P C R++S R+ L+ H++
Sbjct: 3 CDFPGCGRIFSNRQYLNHHKK 23
>d1s7ja_ d.21.1.2 (A:) Hypothetical protein EF0119 {Enterococcus
faecalis [TaxId: 1351]}
Length = 260
Score = 24.5 bits (52), Expect = 4.9
Identities = 15/69 (21%), Positives = 19/69 (27%)
Query: 25 VLDFEKEERMNDVYNRNMKKNFNDTGVFQCPVPNCNRVYSRRRSLSRHRQECGQLPRFHC 84
VL E+ +K GV + SR E H
Sbjct: 149 VLKDEETVAKITPDFSALKALDLGVGVIVTASGDSVDFVSRTFFPKLRINEDPVCGSAHA 208
Query: 85 SLCPYKSKR 93
+L PY KR
Sbjct: 209 NLIPYWGKR 217
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 21.9 bits (46), Expect = 7.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 82 FHCSLCPYKSKRRDLLKSHMK 102
F C +CPY S+ L H++
Sbjct: 4 FKCQICPYASRNSSQLTVHLR 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.406
Gapped
Lambda K H
0.267 0.0618 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 480,977
Number of extensions: 21459
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 43
Length of query: 127
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,377,846
Effective search space: 71647992
Effective search space used: 71647992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)