BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3948
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 31/61 (50%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
YAC C + + H R HTG KP KC C S S K L+ HQ+ HTG K +KC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCP 81
Query: 105 N 105
Sbjct: 82 E 82
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 29/61 (47%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
Y C C D+ H R HTG KP KC C S S ++ L HQ+ HTG K + C
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACP 109
Query: 105 N 105
Sbjct: 110 E 110
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 30/61 (49%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
YAC C + + H R HTG KP KC C S S + L HQ+ HTG K +KC
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165
Query: 105 N 105
Sbjct: 166 E 166
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
Y C C + ++ H R HTG KP KC C S S + AL+VHQ+ HTG K
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
Y C C + ++ H R HTG KP C C S S + L HQ+ HTG K +KC
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCP 137
Query: 105 N 105
Sbjct: 138 E 138
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 69 GVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
G KP C C S S L+ HQ+ HTG K +KC
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPE 54
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 30/61 (49%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
Y C C + ++ H R HTG KP KC C S S S L HQ+ HTG K +KC
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCP 64
Query: 105 N 105
Sbjct: 65 E 65
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 25/55 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
Y C C + D+ H R HTG KP KC C S S LS HQ+ H K
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 19/35 (54%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
KP KC C S S S L HQ+ HTG K +KC
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPE 37
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 40 DKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
+K Y C + + ++ H RKHTG KP +C CN S S L++H KRH
Sbjct: 43 EKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 60 MIGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKCA 104
+ H+R HTG KP KC+ C++ + L+ H ++HTG K +C
Sbjct: 33 LKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCG 79
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 42 SYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAH 101
S + C +C + + HMR HTGVKP KC +C+Y+ + S+L+ H + H+ +
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 102 KC 103
KC
Sbjct: 66 KC 67
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 9 KCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHT 68
KC C F++ +D+ C + KP Y C C Y + H+R H+
Sbjct: 10 KCEVCGKCFSR-KDKLKTHMRCHTGVKP--------YKCKTCDYAAADSSSLNKHLRIHS 60
Query: 69 GVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
+P KC C Y+ S L+VH + HTG
Sbjct: 61 DERPFKCQICPYASRNSSQLTVHLRSHTG 89
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
H R+HTGVKP +C +C S L H + HTG K C
Sbjct: 57 HQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 45 YACFI--CTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK 102
YAC + C + D+ H+R HTG KP +C C + S L+ H + HTG K
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 103 C 103
C
Sbjct: 65 C 65
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGL 98
+ C IC + + + H+R HTG KP C C K A S +KRHT +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR----KFARSDERKRHTKI 84
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
H+R HTG KP KC C Y+ + K++L H +RH
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 69 GVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLE 121
G +CS C + L++H + HTG K +KC A L LE
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLE 53
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 45 YACFI--CTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK 102
YAC + C + G + H+R HTG KP +C C + S L+ H + HTG K
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 103 C 103
C
Sbjct: 65 C 65
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGL 98
+ C IC + + + H+R HTG KP C C K A S +KRHT +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR----KFARSDERKRHTKI 84
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 45 YACFI--CTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK 102
YAC + C + ++ H+R HTG KP +C C + S +++L+ H + HTG K
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFA 64
Query: 103 C 103
C
Sbjct: 65 C 65
Score = 32.3 bits (72), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
+ C IC + + + H+R HTG KP C C +T + H K H
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 45 YACFI--CTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK 102
YAC + C + ++ H+R HTG KP +C C + S L+ H + HTG K
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 103 C 103
C
Sbjct: 65 C 65
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGL 98
+ C IC + + + H+R HTG KP C C K A S +KRHT +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR----KFARSDERKRHTKI 84
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 25/52 (48%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHT 96
Y C C + ++ H R HTG KP KC C + S S L HQ+ HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
KP C C + S S L HQ+ HTG K +KC
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKC 45
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 45 YACFI--CTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK 102
YAC + C + ++ H+R HTG KP +C C + S L+ H + HTG K
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 103 C 103
C
Sbjct: 65 C 65
Score = 33.5 bits (75), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGL 98
+ C IC + + + H+R HTG KP C C K A S +KRHT +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR----KFARSDERKRHTKI 84
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 45 YACFI--CTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK 102
YAC + C + ++ H+R HTG KP +C C + S L+ H + HTG K
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 63
Query: 103 C 103
C
Sbjct: 64 C 64
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGL 98
+ C IC + + + H+R HTG KP C C K A S +KRHT +
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR----KFARSDERKRHTKI 83
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 25/53 (47%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
Y C C + DM H HTG KP KC C + S S L H ++HTG
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 44 NYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
++ C IC ++ + H+ H+ +P C C KS + H HTG K HKC
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 45 YACFI--CTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK 102
YAC + C + ++ H+R HTG KP +C C + S L+ H + HTG K
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 103 C 103
C
Sbjct: 65 C 65
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGL 98
+ C IC + + + H+R HTG KP C C K A S +KRHT +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR----KFARSDERKRHTKI 84
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQK 93
Y C C +K + H+R HT V+P C+ CN+S TK L+ H K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 40 DKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
+K Y+ C + + ++ H RKHTG +P +C C+ + S L++H KRH
Sbjct: 33 EKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 33.1 bits (74), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 60 MIGHMRKHTGVKPLKC--SSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+ H+R HTG KP C C + + L+ H ++HTG + +C
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC 68
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 40 DKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
+K Y+ C + + ++ H RKHTG +P +C C+ + S L++H KRH
Sbjct: 34 EKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 60 MIGHMRKHTGVKPLKC--SSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+ H+R HTG KP C C + + L+ H ++HTG + +C
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQC 69
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 45 YACFI--CTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK 102
YAC + C + ++ H+R HTG KP +C C + S + L+ H + HTG K
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFA 64
Query: 103 C 103
C
Sbjct: 65 C 65
Score = 32.3 bits (72), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
+ C IC + +H + H+R HTG KP C C +T H K H
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 60 MIGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKC 103
++ HMR+HTG KP KC+ C S S L H + HTG K + C
Sbjct: 55 LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC 100
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 45 YACFI--CTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK 102
YAC + C ++ H+R HTG KP +C C + S L+ H + HTG K
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 103 C 103
C
Sbjct: 65 C 65
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGL 98
+ C IC + + + H+R HTG KP C C K A S +KRHT +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR----KFARSDERKRHTKI 84
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 70 VKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
VKP CS C + S KS L VHQ+ HTG+K
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVK 39
Score = 26.9 bits (58), Expect = 4.5, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C +I H R HTGVKP SS
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 35.8 bits (81), Expect = 0.008, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
G R TG+KP +C C+ S S L++H+KRH
Sbjct: 1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.8 bits (81), Expect = 0.008, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP +CS C + +TKS L VHQ+ HTG K
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEK 39
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.012, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
+GVKP CS C + +KS L +H + HTG K
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 28.9 bits (63), Expect = 0.94, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C R +I HMR HTG KP SS
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEKPSGPSS 43
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKA 100
Y C C R G++ H HTG KP +C+ C + + L H + H+G K
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
KP KC C S K L+ H+ HTG K ++C
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRC 48
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 35.0 bits (79), Expect = 0.013, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
+G KP +C C S S + +L+VH++ HTG
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.017, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
+G KP C+ C S+KS L VHQ+ HTG K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 34.7 bits (78), Expect = 0.017, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRH 95
TG+KP +C C++S S L++H+KRH
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 60 MIGHMRKHTGVKPLKC--SSCNYSCSTKSALSVHQKRHTGLKAHKC 103
++ H+R HTG KP C C + L +H++ HTG K KC
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 34.7 bits (78), Expect = 0.021, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP KC C S +SAL+VH K HTG K
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEK 39
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 24/54 (44%)
Query: 44 NYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
Y C C D+ H R HTG KP KC C + +S L H + HTG
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 74 KCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
KC C S S S LS H++ HTG K +KC
Sbjct: 20 KCDECGKSFSHSSDLSKHRRTHTGEKPYKC 49
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.9 bits (76), Expect = 0.028, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
+G KP +C+ C + KS L +HQ+ HTG
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.9 bits (76), Expect = 0.035, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP C+ C + S KS LS HQ+ HTG K
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.045, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTG 97
KP KCS C S + KS L +HQK HTG
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTG 37
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 33.5 bits (75), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 45 YACFI--CTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHT 96
YAC + C + ++ H+R HTG KP +C C + S L+ H + HT
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP KC C+Y+ + K+ L+VH ++HTG K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQ-KRHTG 97
+ C +C R+ ++ HM HTG P KCSSC+ K L H K H+G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR 94
H RKHTG KP +C C K L H+ R
Sbjct: 26 HNRKHTGEKPFECPKCGKCYFRKENLLEHEAR 57
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
+G ++C +C+ +K L VH ++HTG K +C
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECP 39
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
+ C IC + + + H+R HTG KP C C K A S +KRH ++
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACD----ICGRKFARSDERKRHRDIQ 54
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 70 VKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+KP +C C + S L+ H + HTG K C
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 34
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.050, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
T KP +C +C+ S +SAL+ H+ HTG K
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.051, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP +C+ C S S S L+ HQ+ HTG K
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEK 39
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.1 bits (74), Expect = 0.053, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTG 97
KP +C+ C + +TKS L VHQ+ HTG
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTG 37
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP KCS C + + KS L +HQ+ HTG +
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 32.7 bits (73), Expect = 0.073, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTGL 98
+G KP CS C + + KS L VHQ HTG+
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.076, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
+G KP C+ C + + KS L VH+ HTG+K
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 32.7 bits (73), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSC 78
Y C +C + ++GHM+ HTG+KP +C+ C
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC 71
Score = 32.3 bits (72), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMY 113
HM H G++P C C K L H K HTG+K ++C N+ M+
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC-NICAKRFMW 77
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 32.3 bits (72), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 44 NYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVH-QKRHTG 97
++ C +CT + + H R HT KP C CN + + + L H QK H+G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.10, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP KC+ C + +S+L++HQ H+G K
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.11, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP +CS C + S + +LSVHQ+ H+G K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.12, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRH 95
+G KP CS C + S+KS L VHQ+ H
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.14, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP +C+ C + S +S+L+ HQ HTG K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.14, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP KC C+ S S+L+VHQ+ HTG K
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.17, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
T KP KC C + T+S L+ HQ HTG K
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.21, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP KC+ C + S S L+ HQ+ HTG K
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLKA 100
KP +CS C S + KS L VHQ+ HTG K
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.23, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP +C+ C + + +S L HQK HTG K
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 30.8 bits (68), Expect = 0.26, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
+G KPL C+ C + S LS HQ+ H+G K
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 0.29, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 70 VKPLKCSSCNYSCSTKSALSVHQKRHT 96
V P KCS C S S K L VHQ+ HT
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHT 36
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 30.8 bits (68), Expect = 0.30, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
+G KP C C + + S LS+H++ HTG
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.4 bits (67), Expect = 0.34, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
+G KP C+ C + KS L +H++ HTG
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 0.35, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP +C C + + K+ L+ HQ+ HTG K
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 0.38, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTG 97
KP KC C ++K L +HQK HTG
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTG 37
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHT 96
KP KCS C Y+ +KS L H RH+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHS 33
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 0.42, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP +C+ C + S S L+ HQ+ HTG K
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.49, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP KC C S + + L+ HQ+ HTG K
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTG 97
KP +CS C S KS L VHQ+ HTG
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTG 37
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 0.54, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTG 97
KP +CS C + S L VHQ+ H+G
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSG 37
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 29.6 bits (65), Expect = 0.64, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLKA 100
KP +C+ C S K L HQ+ HTG K+
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKS 40
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 0.66, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTG 97
KP +C C S S S L VHQ+ HTG
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTG 37
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.70, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP +C C+ + + K+ L+ HQK HTG K
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 0.72, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP KC C + S L HQ+ HTG K
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 29.3 bits (64), Expect = 0.78, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 68 TGVKPLKCS--SCNYSCSTKSALSVHQKRH 95
TG+KP +C+ C+ S S L++H+KRH
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 44 NYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+ C C H K +++ H R HT +P C C+ + + L H+ H+ K KC
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKC 76
Query: 104 AN 105
Sbjct: 77 QE 78
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
Y C IC R+ + H H+ KP KC C L+VH+ H
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTG 97
KP +C C + S K +L VH + HTG
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 73 LKCSSCNYSCSTKSALSVHQKRHTGLKA 100
+C+ C + + KS LS+HQK HTG K
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHT 96
+G L+C C ++C K++L+ HQ++H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHA 31
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
R HTG KP CS C+ + K L +H KR+
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 38
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
+G K +C++C + S KS L +HQ+ HTG
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTG 35
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 28.5 bits (62), Expect = 1.3, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
+G P +CS C + + K L HQ+ H G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAG 35
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 56 KHGDMIGHMRKHTGVKPLKC--SSCNYSCSTKSALSVHQKRHTGLKAHKC 103
K+ + H+ KHTG KP C C ++ L+ H HTG K C
Sbjct: 17 KNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 66
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 70 VKPLKCSSCNYSCSTKSALSVHQKRHTGLKA 100
VKP C+ C + S S+L+ HQ HTG K
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLKA 100
KP CS C + S+KS L +H + H+G K
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.7, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP KC+ C S LS HQ+ HTG K
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.8, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
K KC+ C S S LS HQK HTG K
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHT 96
+G KP C+ C + S + L HQK HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLKA 100
KP KC+ C + S L+ HQ+ HTG+K
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 2.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
+G K +CS C + S S L +HQ+ HTG
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTG 35
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP KC C T S HQ+ H+G K
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEK 39
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
+G + +C C S K +L++H++ HTG
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTG 35
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 27.3 bits (59), Expect = 2.7, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGL 98
KP +C+ C + KS L VH++ H G+
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGV 38
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP +C C + S L HQ+ HTG K
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 73 LKCSSCNYSCSTKSALSVHQKRHTGLKA 100
KC+ C + + S+L+VHQ+ HTG K
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 45 YACFICTYHT-----RKHGDMIGHMRKHTGVKPLKC--SSCNYSCSTKSALSVHQKRHTG 97
Y +IC++ K+ + H+ KHTG KP C C ++ L+ H HTG
Sbjct: 10 YKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 69
Query: 98 LKAHKC 103
K C
Sbjct: 70 EKNFTC 75
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 48 FICTYHTRKHGDMIG---HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKA 100
F C + + + D G H R H G +P C C +S ++ H K H A
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKPA 60
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTG 97
KP KC C + S+ + HQ+ HTG
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTG 37
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 3.8, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP KC+ C + S L+ H++ HTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGK 39
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.9 bits (58), Expect = 4.0, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP KC C + L HQ+ HTG K
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.6 bits (57), Expect = 4.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP +C C + S + L HQ+ HTG K
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 60 MIGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRH 95
+ H R HTG KP CS C + LS H++ H
Sbjct: 35 LKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 26.2 bits (56), Expect = 6.0, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
+G KP C+ C + KS H++ HTG
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 6.0, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP +C C + S ++L+ HQ+ H+G K
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLKA 100
+P +C C + TKS+L H++ HTG K
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 6.4, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP KC C + + L +HQ+ H G K
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLKA 100
KP KC+ C + S L+ HQ HTG K
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP KC+ C + S L+ H + HTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 74 KCSSCNYSCSTKSALSVHQKRHTGLK 99
+CS C + + KS L +HQ+ HTG K
Sbjct: 14 ECSECGKAFARKSTLIMHQRIHTGEK 39
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 8.7, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
K KC C+ S S+L +HQ H G K
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEK 39
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 8.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP C C + S L HQ+ HTG K
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 22/56 (39%)
Query: 42 SYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
S AC IC R + H H+G KP C C K +S H + H G
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 60
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 9.6, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP KC+ C + S L+ H+ HTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,114,830
Number of Sequences: 62578
Number of extensions: 150939
Number of successful extensions: 590
Number of sequences better than 100.0: 152
Number of HSP's better than 100.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 278
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)