RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3948
(143 letters)
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 63.7 bits (156), Expect = 9e-15
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
C C+Y + H R H +P KC+ C++ S LS H K+ G + +
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPSS 69
Score = 56.0 bits (136), Expect = 9e-12
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+ P KCS C+YSCS+K+AL +H++ H + KC
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKC 40
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 54.4 bits (132), Expect = 7e-11
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
Y C C Y + H+R H+ +P KC C Y+ S L+VH + HTG
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSSG 96
Score = 53.6 bits (130), Expect = 1e-10
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+ C +C + + HMR HTGVKP KC +C+Y+ + S+L+ H + H+ + KC
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Score = 43.6 bits (104), Expect = 8e-07
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
P KC C S K L H + HTG+K +KC
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKC 39
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.1 bits (126), Expect = 1e-10
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP +C+ C + +TKS L VHQ+ HTG
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 24.0 bits (53), Expect = 5.5
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKC 75
Y C C +++ H R HTG
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 1e-10
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
TG KP KCS C + + KS L +HQ+ HTG + ++
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.2 bits (126), Expect = 2e-10
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
TG KP KCS C S + KS L +HQK HTG + ++
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
Score = 27.5 bits (62), Expect = 0.28
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C + H + HTG + SS
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 4e-10
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP KC C ++K L +HQK HTG +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 25.6 bits (57), Expect = 1.3
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C ++ H + HTG +P SS
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 52.5 bits (127), Expect = 6e-10
Identities = 18/46 (39%), Positives = 23/46 (50%)
Query: 58 GDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+ H R+HTGVKP +C +C S L H + HTG K C
Sbjct: 52 DQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSC 97
Score = 47.5 bits (114), Expect = 4e-08
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 55 RKHGDMIGHMRKHTGVKPLKCSS--CNYSCSTKSALSVHQKRHTGLKAHKC 103
K + H RKHTG KP +C C S L HQ+RHTG+K +C
Sbjct: 19 FKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC 69
Score = 39.8 bits (94), Expect = 4e-05
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS--CNYSCSTKSALSVHQKRH 95
+ C C + + H R HTG KP C C + L H H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 50.6 bits (122), Expect = 6e-10
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TGVKP CS C + S KS L VHQ+ HTG+K
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 28.7 bits (65), Expect = 0.13
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C +I H R HTGVKP SS
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 50.2 bits (121), Expect = 7e-10
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG+KP C+ C + +KS L +H + HTG
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 25.1 bits (56), Expect = 2.2
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKC 75
Y C C R +I H R HTG
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 50.2 bits (121), Expect = 8e-10
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G KP +C+ C + KS L VH++ H G+
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 24.4 bits (54), Expect = 4.2
Identities = 9/31 (29%), Positives = 10/31 (32%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKC 75
Y C C +I H R H GV
Sbjct: 13 YECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 9e-10
Identities = 17/41 (41%), Positives = 19/41 (46%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP +CS C S KS L VHQ+ HTG
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 27.5 bits (62), Expect = 0.33
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C K + H R HTG P SS
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 49.8 bits (120), Expect = 1e-09
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP KC C S +SAL+VH K HTG K
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.35
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
+ C C + + H + HTG KP SS
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 1e-09
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
G K KC+ C + + S+L+VHQ+ HTG K ++
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS 45
Score = 26.7 bits (60), Expect = 0.60
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 61 IGHMRKHTGVKPLKCSS 77
H R HTG KP SS
Sbjct: 29 TVHQRIHTGEKPSGPSS 45
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 49.8 bits (120), Expect = 1e-09
Identities = 17/41 (41%), Positives = 18/41 (43%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
GV P KCS C S S K L VHQ+ HT K
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 28.3 bits (64), Expect = 0.16
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C ++ H R HT KP SS
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.5 bits (119), Expect = 1e-09
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
TG KP +CS C S + KS L VHQ+ HTG K ++
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 2e-09
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G KP KC C + L HQ+ HTG K
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 27.5 bits (62), Expect = 0.29
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C ++ D+ H R HTG K SS
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS 45
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 2e-09
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP +CS C + +TKS L VHQ+ HTG K
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 27.4 bits (62), Expect = 0.30
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
+ C C ++I H R HTG KP SS
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 2e-09
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
G KP CS C + S+KS L +H + H+G K ++
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
Score = 27.5 bits (62), Expect = 0.33
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C +I HMR H+G KP SS
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 49.7 bits (119), Expect = 3e-09
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHT---GVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAH 101
C IC + R+ + H RKH C C +++ H+ +
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 102 KC 103
Sbjct: 68 AP 69
Score = 45.5 bits (108), Expect = 1e-07
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK 102
+G L+C C ++C K++L+ HQ++H A
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAAL 37
Score = 25.8 bits (57), Expect = 2.4
Identities = 6/34 (17%), Positives = 8/34 (23%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSC 78
+ C C K + H K L
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQES 72
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.6 bits (117), Expect = 3e-09
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP KC C S +S L+ H HT K
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 28.2 bits (64), Expect = 0.16
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
+ C IC + H HT KP SS
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 49.8 bits (120), Expect = 3e-09
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 58 GDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG----LKAHKC 103
G R HTG KP CS C+ + K L +H KR+ A C
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVC 50
Score = 45.2 bits (108), Expect = 2e-07
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTG----VKPLKCSSCNYSCSTKSALSVHQKRHTGLKA 100
YAC C R+ + H +++ CS C + + ++ ++ H G
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 101 HKC 103
+
Sbjct: 76 VEG 78
Score = 30.2 bits (69), Expect = 0.060
Identities = 3/22 (13%), Positives = 6/22 (27%)
Query: 57 HGDMIGHMRKHTGVKPLKCSSC 78
M H G ++ +
Sbjct: 60 RNTMARHADNCAGPDGVEGENS 81
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 48.7 bits (117), Expect = 3e-09
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
+G KP CS C + S+KS L VHQ+ H K ++
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 28.7 bits (65), Expect = 0.097
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
+ C C ++ H + H KP SS
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 49.4 bits (119), Expect = 3e-09
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 58 GDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG--LKAHKC 103
G R H+G KP +C C+ + + +H + + C
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHC 48
Score = 46.0 bits (110), Expect = 7e-08
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTG--VKPLKCSSCNYSCSTKSALSVHQKR-HTGLK 99
Y C+IC + G M H+ + V C C+ + KS L VH ++ H+
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 48.7 bits (117), Expect = 3e-09
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG +P +C C + TKS+L H++ HTG K
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.57
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCS 76
Y C C + +I H R HTG KP S
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 49.4 bits (119), Expect = 3e-09
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 56 KHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
G + + KC C S S S LS H++ HTG K +KC
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKC 49
Score = 42.8 bits (102), Expect = 1e-06
Identities = 20/58 (34%), Positives = 24/58 (41%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK 102
Y C C D+ H R HTG KP KC C + +S L H + HTG
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 3e-09
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
TG KP +CS C + S + +LSVHQ+ H+G K ++
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 25.2 bits (56), Expect = 1.8
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C +C + H R H+G KP SS
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 48.9 bits (116), Expect = 4e-09
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
Y C C +K + H+R HT V+P C+ CN+S TK L+ H K K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 31.2 bits (70), Expect = 0.017
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 74 KCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
C C S L H + HT ++ + C
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHC 32
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 4e-09
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G KP C+ C + S KS LS HQ+ HTG K
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.41
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCS 76
Y C C + + H R HTG KP S
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 4e-09
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
TG KP KC+ C + KS L +HQ+ H K ++
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS 45
Score = 28.7 bits (65), Expect = 0.11
Identities = 9/33 (27%), Positives = 10/33 (30%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
C C +I H R H K SS
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS 45
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 4e-09
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP C+ C + + +S L HQK HT K
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 27.5 bits (62), Expect = 0.27
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C ++I H + HT KP SS
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 4e-09
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG + +CS C + KS LS+HQ+ H G K
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.71
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C + + H R H G KP SS
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 5e-09
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG + +CS C + + KS L +HQ+ HTG K
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 27.8 bits (63), Expect = 0.19
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C + +I H R HTG KP SS
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 5e-09
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+ KP KC C + + L +HQ+ H G K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 27.5 bits (62), Expect = 0.33
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C + ++ H R H G K SS
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 5e-09
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP KC+ C + S L+ HQ+ HTG+K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 26.7 bits (60), Expect = 0.58
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C ++ + H R HTGVKP SS
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 47.9 bits (115), Expect = 5e-09
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
G G KP +C C + S K +L VH + HTG
Sbjct: 1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
Score = 23.7 bits (52), Expect = 6.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKP 72
Y C C + G +I H+R HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 5e-09
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G KP KC C + S L HQ+ HTG K
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.34
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
+ C C ++ + H R HTG KP SS
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 5e-09
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP KC C+ S S+L+VHQ+ HTG K
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.32
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C +C R + H R HTG KP SS
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS 45
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 47.9 bits (115), Expect = 5e-09
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP +C+ C S K L HQ+ HTG K+
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 28.3 bits (64), Expect = 0.14
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCS 76
+ C C R G+++ H R HTG K S
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 47.9 bits (115), Expect = 6e-09
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
G K KC C+ S S+L +HQ H G K
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.23
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
+ C C + + H H G KP SS
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 6e-09
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
TG P CS C + K+ L +HQK HTG + ++
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS 45
Score = 28.2 bits (64), Expect = 0.17
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
+ C C ++I H + HTG +P SS
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGPSS 45
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 6e-09
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
TG K C C S S L H++ H+G K ++
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45
Score = 27.9 bits (63), Expect = 0.23
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C + ++ H R H+G KP SS
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 6e-09
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
TG P +C C + S K L HQ+ H G K ++
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 25.5 bits (57), Expect = 1.3
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C + +I H R H G KP SS
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 47.9 bits (115), Expect = 6e-09
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G KP KC C T S HQ+ H+G K
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.45
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
+ C C + H R H+G KP SS
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSS 45
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 48.6 bits (117), Expect = 6e-09
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
H KP KC C S K L+ H+ HTG K ++C
Sbjct: 8 HSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRC 48
Score = 45.1 bits (108), Expect = 1e-07
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
Y C C R G++ H HTG KP +C+ C + + L H + H+G K
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 25.1 bits (56), Expect = 3.4
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 86 SALSVHQKRHTGLKAHKC 103
H K +KC
Sbjct: 3 HHHHHHSHMTHSDKPYKC 20
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 7e-09
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP KC+ C + +S+L++HQ H+G K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.23
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C R + H H+G KP SS
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.9 bits (115), Expect = 7e-09
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG K +C+ C + + KS LS+HQK HTG K
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.49
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
+ C C + + H + HTG KP SS
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 7e-09
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP C C + S L HQ+ HTG K
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.33
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C + H R HTG KP SS
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 7e-09
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP +C C S S S L VHQ+ HTG
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 26.3 bits (59), Expect = 0.68
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
+ C C + +I H R HTG P SS
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 47.5 bits (114), Expect = 8e-09
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP +C+ C S S S L+ HQ+ HTG K
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.19
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
+ C C + H R HTG KP SS
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 8e-09
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TGVKP C+ C + S S+L+ HQ HTG K
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.27
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C + + H HTG KP SS
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 48.6 bits (117), Expect = 9e-09
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 58 GDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
G + H+R HTG KP +C C + S L+ H + HTG K C
Sbjct: 20 GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Score = 47.1 bits (113), Expect = 4e-08
Identities = 16/55 (29%), Positives = 22/55 (40%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
+ C IC + + + H+R HTG KP C C + H K H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 30.9 bits (71), Expect = 0.043
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 71 KPLKCSS--CNYSCSTKSALSVHQKRHTGLKAHKC 103
+P C C+ S +L+ H + HTG K +C
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC 37
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 47.5 bits (114), Expect = 9e-09
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
TG KP KC C + L H HTG K ++
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 27.9 bits (63), Expect = 0.19
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C D+ H HTG KP SS
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP +C C+ + + K+ L+ HQK HTG K
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 1.5
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCS 76
Y C +C+ + + H + HTG KP S
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG +P C+ C + + +S L HQK HTG K
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.14
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C +C ++I H + HTG KP SS
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.5 bits (114), Expect = 1e-08
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP +C+ C + + +S L HQK HTG K
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.086
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C ++ H + HTG KP SS
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 48.6 bits (117), Expect = 1e-08
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 61 IGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
HM H G++P C C K L H K HTG+K ++C
Sbjct: 26 DRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
Score = 42.8 bits (102), Expect = 2e-06
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
Y C +C + ++GHM+ HTG+KP +C+ C + + H+ + K+++
Sbjct: 38 YGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEA 94
Score = 42.0 bits (100), Expect = 5e-06
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 64 MRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G K C C S + KS H H GL+ + C
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGC 40
Score = 29.3 bits (67), Expect = 0.19
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALS 89
H + K + + + + S S
Sbjct: 82 HRHVTSCTKSYEAAKAEQNTTEASGPS 108
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.2 bits (113), Expect = 1e-08
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP KC C + S+ + HQ+ HTG +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 26.8 bits (60), Expect = 0.52
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C + H R HTG +P SS
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 50.1 bits (121), Expect = 1e-08
Identities = 23/59 (38%), Positives = 29/59 (49%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
Y C C + ++ H R HTG KP C C S S + L HQ+ HTG K +KC
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKC 136
Score = 49.7 bits (120), Expect = 2e-08
Identities = 25/59 (42%), Positives = 30/59 (50%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
YAC C + + H R HTG KP KC C S S + L HQ+ HTG K +KC
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKC 164
Score = 49.7 bits (120), Expect = 2e-08
Identities = 26/59 (44%), Positives = 31/59 (52%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
YAC C + + H R HTG KP KC C S S K L+ HQ+ HTG K +KC
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Score = 49.4 bits (119), Expect = 2e-08
Identities = 21/49 (42%), Positives = 26/49 (53%)
Query: 55 RKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
D+ H R HTG KP KC C S S ++ L HQ+ HTG K + C
Sbjct: 60 SDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYAC 108
Score = 47.1 bits (113), Expect = 2e-07
Identities = 16/49 (32%), Positives = 20/49 (40%)
Query: 55 RKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+ G KP C C S S L+ HQ+ HTG K +KC
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKC 52
Score = 45.5 bits (109), Expect = 6e-07
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 55 RKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
+ ++ H R HTG KP KC C S S + AL+VHQ+ HTG K
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 1e-08
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP KC+ C + S S L+ HQ+ HTG K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.58
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 61 IGHMRKHTGVKPLKCSS 77
H R HTG KP SS
Sbjct: 29 ARHQRIHTGEKPSGPSS 45
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 47.1 bits (113), Expect = 1e-08
Identities = 17/41 (41%), Positives = 18/41 (43%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG K KC+ C S S LS HQK HTG K
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 1.5
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 61 IGHMRKHTGVKPLKCSS 77
H + HTG KP SS
Sbjct: 29 SQHQKIHTGEKPSGPSS 45
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 1e-08
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP +C+ C + S +S+L+ HQ HTG K
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 25.6 bits (57), Expect = 1.3
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C + H HTG KP SS
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 47.1 bits (113), Expect = 1e-08
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP KC C S + + L+ HQ+ HTG K
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.68
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
+ C C + + H R HTG KP SS
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 47.5 bits (114), Expect = 1e-08
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 61 IGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
G H+G KP C C + S S L HQ+ HTG K +KC
Sbjct: 3 SGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKC 45
Score = 44.4 bits (106), Expect = 2e-07
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
Y C C + ++ H R HTG KP KC C + S S L HQ+ HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69
Score = 24.4 bits (54), Expect = 7.7
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 88 LSVHQKRHTGLKAHKC 103
S H+G K + C
Sbjct: 2 SSGSSGIHSGEKPYGC 17
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-08
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP C C + S L+ H++ HTG K
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.13
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
+ C C H + H R HTG KP SS
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-08
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP KC+ C S LS HQ+ HTG K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.47
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C R + + H R HTG KP SS
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-08
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP KC+ C + S L+ HQ HTG K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.22
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C R H ++ H HTG KP SS
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS 45
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.8 bits (112), Expect = 2e-08
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
G KP +CS C S S L+ H HT K ++
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS 45
Score = 27.9 bits (63), Expect = 0.24
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C + H HT KP SS
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGPSS 45
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 48.2 bits (116), Expect = 2e-08
Identities = 16/59 (27%), Positives = 22/59 (37%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
Y C IC R+ + H H+ KP KC C L+VH+ H +
Sbjct: 46 YTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 47.4 bits (114), Expect = 4e-08
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 61 IGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
G K C C + L +H++ HT + + C
Sbjct: 6 SGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTC 48
Score = 26.6 bits (60), Expect = 1.5
Identities = 4/19 (21%), Positives = 5/19 (26%)
Query: 85 KSALSVHQKRHTGLKAHKC 103
S S + K C
Sbjct: 2 SSGSSGGRLPSKTKKEFIC 20
Score = 26.2 bits (59), Expect = 2.1
Identities = 3/15 (20%), Positives = 4/15 (26%)
Query: 63 HMRKHTGVKPLKCSS 77
H H +S
Sbjct: 92 HKTLHMQTSSPTAAS 106
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 2e-08
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP +C+ C + S S L+ HQ+ HTG K
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.55
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C + + H R HTG KP SS
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 2e-08
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP C+ C S KS L+ H++ HTG K
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.59
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C + + H R HTG KP SS
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS 45
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 2e-08
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP +C C + + K+ L+ HQ+ HTG K
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.31
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C + ++ H R HTG KP SS
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 2e-08
Identities = 14/43 (32%), Positives = 17/43 (39%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
G K KC C S S L HQ+ HTG K ++
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 27.1 bits (61), Expect = 0.35
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C +C + + H R HTG KP SS
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 2e-08
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G KP C C + + L HQ+ HTG K
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.24
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C +++ H R HTG KP SS
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 46.4 bits (111), Expect = 2e-08
Identities = 14/41 (34%), Positives = 16/41 (39%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP C C S S L HQ+ H+G K
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 26.8 bits (60), Expect = 0.51
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCS 76
Y C C R ++ H R H+G KP S
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 2e-08
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G KP +C C + S L HQ+ HTG K
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 26.4 bits (59), Expect = 0.74
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 60 MIGHMRKHTGVKPLKCSS 77
+ H R HTG KP SS
Sbjct: 28 LHSHQRVHTGEKPSGPSS 45
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 2e-08
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G KP KC+ C + S L+ H + HTG K
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.93
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 61 IGHMRKHTGVKPLKCSS 77
H R HTG KP SS
Sbjct: 29 TNHWRIHTGEKPSGPSS 45
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 3e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP +C C + S ++L+ HQ+ H+G K
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 25.5 bits (57), Expect = 1.4
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C +C H + H R H+G KP SS
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 3e-08
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G KP KC C + L+ H + HTG K
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.43
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
+ C C R++ + H+R HTG KP SS
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.3 bits (111), Expect = 3e-08
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP KC C S L+ HQ HTG K
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.50
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C R++ + H HTG KP SS
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 47.9 bits (115), Expect = 3e-08
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR-HTGLK 99
+ C +C R+ ++ HM HTG P KCSSC+ K L H + H+G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 47.5 bits (114), Expect = 5e-08
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 55 RKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR---HTGLKAHKC 103
+ H RKHTG KP +C C K L H+ R + + C
Sbjct: 18 LSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTC 69
Score = 45.6 bits (109), Expect = 2e-07
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 55 RKHGDMIGHMRK---HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+ +++ H + + + CS C + + L +H HTG +KC
Sbjct: 46 FRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKC 97
Score = 43.6 bits (104), Expect = 2e-06
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G ++C +C+ +K L VH ++HTG K +C
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFEC 38
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 4e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG +P KC+ C S + L HQ+ HTG K
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.66
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 61 IGHMRKHTGVKPLKCSS 77
I H R HTG KP SS
Sbjct: 29 IQHQRIHTGEKPSGPSS 45
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 45.6 bits (109), Expect = 4e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP +C C + S + L HQ+ HTG K
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.68
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 61 IGHMRKHTGVKPLKCSS 77
I H R HTG KP SS
Sbjct: 29 IQHQRVHTGEKPSGPSS 45
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 5e-08
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
TG KP C+ C + + L+ H + HT ++
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 5e-08
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
+G +P KC+ C +S L+ H + H+ K+ ++
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
Score = 27.5 bits (62), Expect = 0.31
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 61 IGHMRKHTGVKPLKCSS 77
GH+R H+ K SS
Sbjct: 29 AGHLRLHSREKSSGPSS 45
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.5 bits (109), Expect = 5e-08
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP KC+ C + S L H+ HTG K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.76
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 61 IGHMRKHTGVKPLKCSS 77
+ H HTG KP SS
Sbjct: 29 VRHRGIHTGEKPSGPSS 45
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 5e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP KC+ C + S L+ H+ HTG K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 1.4
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 61 IGHMRKHTGVKPLKCSS 77
H HTG KP SS
Sbjct: 29 ARHRGIHTGEKPSGPSS 45
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 5e-08
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP KC+ C + S L+ H++ HTG K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 25.9 bits (58), Expect = 1.2
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 61 IGHMRKHTGVKPLKCSS 77
H R HTG KP SS
Sbjct: 29 ARHRRVHTGGKPSGPSS 45
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 45.2 bits (108), Expect = 6e-08
Identities = 13/41 (31%), Positives = 15/41 (36%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG P +C C S K L HQK H+G
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 6e-08
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G KP KCS C + + L+ H++ HTG +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 26.3 bits (59), Expect = 0.88
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C +H + H R HTG +P SS
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 45.2 bits (108), Expect = 6e-08
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G P +CS C + + K L HQ+ H G
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 24.4 bits (54), Expect = 3.9
Identities = 5/15 (33%), Positives = 5/15 (33%)
Query: 61 IGHMRKHTGVKPLKC 75
I H R H G
Sbjct: 27 ISHQRTHAGESGPSS 41
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 7e-08
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
TG KP KC+ C + S L+ H+ HTG K
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 1.8
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 61 IGHMRKHTGVKPLKCSS 77
H HTG KP SS
Sbjct: 29 ARHRGIHTGEKPSGPSS 45
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 45.0 bits (107), Expect = 9e-08
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 63 HMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
TG KP C+ C + S LS H++ H+G+K ++
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 46.3 bits (111), Expect = 9e-08
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG--LKAHK 102
AC IC R + H H+G KP C C K +S H + H G K +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 103 C 103
C
Sbjct: 68 C 68
Score = 40.2 bits (95), Expect = 1e-05
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTG--VKPLKCSSCNYSCSTKSALSVHQKR-HTGLKA 100
Y+C +C ++ M H+R H G KP C SC S L+ H K+ H+G +
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 40.2 bits (95), Expect = 2e-05
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G + C C L+ H+ H+G K + C
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSC 38
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 1e-07
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
+G +P C+ C + S L H KRH K+ ++
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
Score = 28.6 bits (65), Expect = 0.12
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C + +H +I H+++H K SS
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 1e-07
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
TG KP KC C + S L H H+G + ++
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 27.1 bits (61), Expect = 0.40
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C +C R ++ H H+G +P SS
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 45.1 bits (108), Expect = 1e-07
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 61 IGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
H+ H+ +P C C KS + H HTG K HKC
Sbjct: 18 STHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Score = 44.3 bits (106), Expect = 3e-07
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 59 DMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
DM H HTG KP KC C + S S L H ++HTG
Sbjct: 44 DMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 29.7 bits (68), Expect = 0.089
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 74 KCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
C C S S LS H H+ + + C
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPC 32
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 45.3 bits (108), Expect = 1e-07
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 55 RKHGDMIGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKC 103
+KH + H HT P +C C+ S S L H+K H G K
Sbjct: 14 KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Score = 39.1 bits (92), Expect = 3e-05
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR 94
H + H G K SC++ T + H
Sbjct: 52 HEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 83
Score = 27.6 bits (62), Expect = 0.49
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 75 CSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+C + + L VHQ HT ++C
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYEC 34
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 44.1 bits (105), Expect = 2e-07
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G K C C + SAL +HQ+ H G K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 24.9 bits (55), Expect = 3.0
Identities = 7/15 (46%), Positives = 7/15 (46%)
Query: 63 HMRKHTGVKPLKCSS 77
H R H G K SS
Sbjct: 31 HQRVHMGEKCSGPSS 45
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 44.1 bits (105), Expect = 2e-07
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
G + +CS C S H++ HTG K
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.35
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
+ C C + + I H R HTG KP SS
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS 45
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 44.1 bits (105), Expect = 2e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+ K +C C + KS L+ HQ+ HTG K
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.51
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
+ C C + H R HTG KP SS
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 2e-07
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G KP +C C + L+ H++ HTG ++
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 25.6 bits (57), Expect = 1.3
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS 77
Y C C + G + H R HTG + SS
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 43.3 bits (103), Expect = 3e-07
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR-HTGLKAHKCAN 105
TG KP +C C + ++L H + HTG K ++
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 44.5 bits (106), Expect = 4e-07
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHT 96
H RKHTG KP +C CN S S L++H KRH
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 42.6 bits (101), Expect = 2e-06
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 63 HMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKC 103
H+R HTG KP KC+ C++ + L+ H ++HTG K +C
Sbjct: 36 HLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQC 78
Score = 30.3 bits (69), Expect = 0.065
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 58 GDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
G + R H P C + S L H + HTG K +KC
Sbjct: 7 GPDLEKRRIHYCDYP----GCTKVYTKSSHLKAHLRTHTGEKPYKC 48
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 43.8 bits (104), Expect = 4e-07
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHT 96
H+R HTG KP +C C + S L+ H + HT
Sbjct: 40 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 32.7 bits (75), Expect = 0.007
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 63 HMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKC 103
++P C SC+ S L+ H + HTG K +C
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC 52
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 44.0 bits (105), Expect = 6e-07
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+ C IC + + + H+R HTG KP C C + H+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILE 61
Score = 37.1 bits (87), Expect = 2e-04
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 4/58 (6%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR---HTGLK 99
+AC IC + + H P+ S L R G +
Sbjct: 32 FACDICGRKFARSDERKRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 34.8 bits (81), Expect = 0.001
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 70 VKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+KP +C C + S L+ H + HTG K C
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 34
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 45.3 bits (108), Expect = 6e-07
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 17/104 (16%)
Query: 9 KCTFCNIIFNKLQD--EELIMTHCKSCKKPKRPDKSYNYACFICTYHTRK-----HGDMI 61
+ C+ F+ + + H +K + C ++
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKE--------FVCHWGGCSRELRPFKAQYMLV 56
Query: 62 GHMRKHTGVKPLKCSS--CNYSCSTKSALSVHQKRHTGLKAHKC 103
HMR+HTG KP KC+ C S S L H + HTG K + C
Sbjct: 57 VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMC 100
Score = 44.1 bits (105), Expect = 2e-06
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 63 HMRKHTGVKPLKC--SSCNYSCSTKSALSVHQKR-HTGLKAHKC 103
H+R HTG KP C C+ + S S + HQ R H+ K + C
Sbjct: 88 HLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVC 131
Score = 40.7 bits (96), Expect = 2e-05
Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 45 YACFICTYHTRKHGDMIGHMRK---HTGVKPLKCSSCNYSC-----STKSALSVHQKRHT 96
C+ ++ H+ H K C S + L VH +RHT
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 97 GLKAHKC 103
G K HKC
Sbjct: 64 GEKPHKC 70
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 57 HGDMIGHM-RKHTGVKPLKCSS--CNYSCSTKSALSVHQKRHTG 97
D H R H+ KP C C + S+L H K G
Sbjct: 112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 31.4 bits (72), Expect = 0.057
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 3/36 (8%)
Query: 71 KPLKCSSCNYSCSTKSALSVH---QKRHTGLKAHKC 103
+ C+ ++ L H + H K C
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVC 37
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 42.5 bits (101), Expect = 6e-07
Identities = 12/38 (31%), Positives = 14/38 (36%)
Query: 62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
G G KP KC +C + L H HTG
Sbjct: 1 GSSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSG 38
Score = 25.2 bits (56), Expect = 1.7
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKP 72
Y C C + + H+ HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGP 39
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 43.7 bits (104), Expect = 6e-07
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 41 KSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGL 98
++ C K + H+R HTG KP C C + + L+ H ++HTG
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 99 KAHKC 103
+ +C
Sbjct: 64 RPFQC 68
Score = 42.9 bits (102), Expect = 1e-06
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
H RKHTG +P +C C+ + S L++H KRH
Sbjct: 56 HYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 36.0 bits (84), Expect = 5e-04
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 66 KHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
K T + C + + S L H + HTG K + C
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHC 38
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 45.3 bits (108), Expect = 7e-07
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 61 IGHMRKHTGVKPLKCSS--CNYSCSTKSALSVHQKRHTGLKAHKC 103
+G K CS C + + L H +HTG K C
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPC 45
Score = 44.9 bits (107), Expect = 9e-07
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 55 RKHGDMIGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKC 103
K+ + H+ KHTG KP C C ++ L+ H HTG K C
Sbjct: 25 NKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTC 75
Score = 44.9 bits (107), Expect = 1e-06
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 55 RKHGDMIGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKC 103
+KH + H HT P +C C+ S S L H+K H G K
Sbjct: 117 KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 167
Score = 43.4 bits (103), Expect = 4e-06
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 55 RKHGDMIGHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAH--KC 103
+ H HTG K C C+ +TK+ + H R +K C
Sbjct: 55 TSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVC 107
Score = 36.0 bits (84), Expect = 0.001
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 55 RKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR 94
+ H + H G K SC++ T + H
Sbjct: 147 SLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAE 186
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 45.0 bits (107), Expect = 8e-07
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 19/76 (25%)
Query: 30 CKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSS--CNYSCSTKSA 87
C K F Y ++ H+R HTG KP C C +
Sbjct: 65 CPREGKS-----------FKAKYK------LVNHIRVHTGEKPFPCPFPGCGKIFARSEN 107
Query: 88 LSVHQKRHTGLKAHKC 103
L +H++ HTG K KC
Sbjct: 108 LKIHKRTHTGEKPFKC 123
Score = 44.6 bits (106), Expect = 9e-07
Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 9/68 (13%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLK---------CSSCNYSCSTKSALSVHQKRH 95
C +++ H+ P + C S K L H + H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 96 TGLKAHKC 103
TG K C
Sbjct: 86 TGEKPFPC 93
Score = 43.8 bits (104), Expect = 2e-06
Identities = 6/57 (10%), Positives = 12/57 (21%), Gaps = 3/57 (5%)
Query: 47 CFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
++ + SC+ + ST L H +
Sbjct: 3 SGSSGQPIKQE---LSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQN 56
Score = 26.1 bits (58), Expect = 3.1
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 59 DMIGHMRKHTGVKPLKCS 76
D HM HT K S
Sbjct: 137 DRKKHMHVHTSDKSGPSS 154
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 42.5 bits (101), Expect = 9e-07
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR-HTG 97
+ C +CT + + H R HT KP C CN + + + L H ++ H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.7 bits (73), Expect = 0.010
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+ C C + + + L H + HT K + C
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPC 33
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 43.7 bits (104), Expect = 1e-06
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 63 HMRKHTGVKPLKCSS--CNYSCSTKSALSVHQKRHTGLKAHKCA 104
H HTG KP +C+ C S L H + HTG + + C
Sbjct: 53 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Score = 43.3 bits (103), Expect = 2e-06
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 55 RKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
R + M H+ H G + C+ C + S L HQ HTG K +C
Sbjct: 18 RDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQC 65
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 63 HMRKHTGVKPLKCSS--CNYSCSTKSALSVHQKRHTGLKAHK 102
H+R HTG +P C CN + + L H H K ++
Sbjct: 83 HVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 24.8 bits (55), Expect = 9.4
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 71 KPLKCSS--CNYSCSTKSALSVHQKRHTGLKAHKC 103
+ + C C SA+ H H G + H C
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVC 37
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 41.9 bits (99), Expect = 1e-06
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
G G P C C S + + +L+VHQ+ +
Sbjct: 1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 24.2 bits (53), Expect = 4.3
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKP 72
Y C C + G + H R + P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 41.6 bits (98), Expect = 2e-06
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
G R TG+KP +C C+ S S L++H+KRH
Sbjct: 1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 2e-06
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCAN 105
TG KP +C C + S +L H + H ++
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 40.6 bits (96), Expect = 4e-06
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
T K C+ C + + L+ HQK HT
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR 37
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 40.2 bits (95), Expect = 6e-06
Identities = 11/38 (28%), Positives = 12/38 (31%)
Query: 62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
G G KP C C L H + HTG
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSG 38
Score = 27.5 bits (62), Expect = 0.24
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKP 72
Y C IC R + H+R HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGP 39
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 40.2 bits (94), Expect = 6e-06
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAH 101
G P KCS C+ + ++ L H++ H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 41.0 bits (97), Expect = 6e-06
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 63 HMR-KHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKC 103
H + +H K C +C S + K L H K H+ + + C
Sbjct: 28 HKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
Score = 35.6 bits (83), Expect = 5e-04
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 67 HTGVKPLKCSS--CNYSCSTKSALSVHQK-RHTGLKAHKC 103
+G + C C S + L+ H+K +H K+ C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSC 41
Score = 29.1 bits (66), Expect = 0.17
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 63 HMRKHTGVKPLKCSSC 78
HM+ H+ + C
Sbjct: 59 HMKLHSDTRDYICEFS 74
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 39.6 bits (93), Expect = 7e-06
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+G KP C+ C + S + L HQK HT
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 40.2 bits (95), Expect = 9e-06
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 45 YACFICTYHTRKHGDMIGHMR--KHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGL 98
Y C +C+ + H VK C C + K ++ H K +
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 34.5 bits (80), Expect = 0.001
Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 65 RKHTGVKPLKCSSCNYSCSTKSALSVHQ--KRHTGLKAHKC 103
G +C C+ + S H +K + C
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPC 43
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 39.5 bits (93), Expect = 1e-05
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
+G + +C C S K +L++H++ HTG
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSG 37
Score = 23.3 bits (51), Expect = 8.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKP 72
Y C C R+ G + H R HTG P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGP 38
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 39.5 bits (93), Expect = 1e-05
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR-HTGLKAHKC 103
+ KP C SC S L+ H K+ HT + HKC
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 26.0 bits (58), Expect = 1.2
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 45 YACFICTYHTRKHGDMIGHMRK-HTGVKPLKCSSC 78
Y C C + + GH+++ HT +P KC
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 40.5 bits (94), Expect = 2e-05
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 8 LKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKH 67
+C C+ ++ L + + H + + + + ++ K
Sbjct: 20 FRCKDCSAAYDTLVE---LTVHMNETGHYRDDNHE-TDNNNPKRWSKPRKRSLLEMEGKE 75
Query: 68 TGVKPLKCSSCNYSCSTKSALSVHQKRHT 96
K LKC C +S + LSVH +
Sbjct: 76 DAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 37.4 bits (86), Expect = 2e-04
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKR--HTGLKAHKCAN 105
+ TG +C C+ + T L+VH H H+ N
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN 54
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 36.7 bits (84), Expect = 1e-04
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
KP KC C+Y+ + K+ L+VH ++HTG K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 28.6 bits (63), Expect = 0.11
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVK 71
Y C C+Y + ++ H+RKHTG K
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 37.6 bits (87), Expect = 2e-04
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 9/73 (12%)
Query: 41 KSYNYACFICTYHTRKHGDMIGHMRK-HTGVKPLK--------CSSCNYSCSTKSALSVH 91
+ C +++ H+ H G C S K L H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Query: 92 QKRHTGLKAHKCA 104
+ HTG K+ +
Sbjct: 82 IRVHTGEKSGPSS 94
Score = 29.2 bits (65), Expect = 0.21
Identities = 8/38 (21%), Positives = 10/38 (26%), Gaps = 1/38 (2%)
Query: 67 HTGVKPLKCSSCNYSCSTKSALSVH-QKRHTGLKAHKC 103
SC+ + ST L H H G
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN 57
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 37.4 bits (86), Expect = 2e-04
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 27 MTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMR-KHTGVK---PLKCSSCNYSC 82
M H + Y C CT+ T H+ +H V C CN+
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 83 STKSALSVHQKRH 95
ALS H ++
Sbjct: 61 KRYDALSEHNLKY 73
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 36.2 bits (84), Expect = 3e-04
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 62 GHMRKHTGVKPLKCS--SCNYSCSTKSALSVHQKRHTGLKAHKC 103
G + ++ CS C + S L H + HTG K C
Sbjct: 7 GPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSC 50
Score = 33.9 bits (78), Expect = 0.002
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 32 SCKKPKRPDKSYNYACFI--C--TYHTRKHGDMIGHMRKHTGVKPLKCS--SCNYSCSTK 85
S + ++ C C TY H + H R HTG KP CS C +
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSH--LKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 86 SALSVHQKRH 95
LS H++ H
Sbjct: 63 DELSRHRRTH 72
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 33.3 bits (75), Expect = 0.002
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHT 96
KP KCS C Y+ +KS L H RH+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHS 33
Score = 24.8 bits (53), Expect = 2.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVK 71
+ C +C Y TR ++ HM +H+ K
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 31.4 bits (71), Expect = 0.013
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKCA 104
K + C C L+ H+ H+G K +
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSG 44
Score = 30.3 bits (68), Expect = 0.035
Identities = 10/44 (22%), Positives = 13/44 (29%)
Query: 36 PKRPDKSYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCN 79
AC IC R + H H+G KP +
Sbjct: 4 GSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 32.9 bits (74), Expect = 0.033
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
G + +C C+ + L H H
Sbjct: 170 GLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 28.5 bits (63), Expect = 0.23
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 58 GDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQK 93
G + H G + KCS C +S LS +
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKT 39
Score = 24.2 bits (52), Expect = 7.9
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 84 TKSALSVHQKRHTGLKAHKCAN 105
+ + QK H G ++ KC+
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSK 23
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 26.3 bits (57), Expect = 0.76
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHT 96
+G +P C C + +TK+ + H K HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 25.9 bits (56), Expect = 1.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 70 VKPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
+KP C C + AL H + HTG K
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 26.0 bits (56), Expect = 1.1
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
+G KP C C K +S H + H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.9 bits (56), Expect = 1.4
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHT-GLKA 100
K KC+ C + S L+ H++ HT G+K+
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKS 41
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 26.5 bits (58), Expect = 3.7
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Query: 8 LKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACF-ICTYHTRKHGDMIGHMRK 66
+C C+ + +K + E + C K D + F I TY + D G +
Sbjct: 66 FQCQVCSFVVHK-RCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLY 124
Query: 67 HTGVKPLKCSSCNYSCSTKSALSVHQK 93
+ +KC +C + + ++V
Sbjct: 125 GLIHQGMKCDTCMMNVHKRCVMNVPSL 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 5.0
Identities = 17/131 (12%), Positives = 32/131 (24%), Gaps = 42/131 (32%)
Query: 21 QDEELIMTHC--KSC--KKPKRPDKSYNYACFI-----CTYHTRKHGDMIGHMRKHTGVK 71
D +++ S K+PK S + ++ H ++ H
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 72 PLKCSSC---NYSCSTKSALSVHQKRHTGLKAHKCANVIIIAIMYHILEIMLEDIQGRDH 128
Y S H I +H+ I + R
Sbjct: 461 SDDLIPPYLDQYFYS-------H-------------------IGHHLKNIEHPE---RMT 491
Query: 129 INVNIALTLQF 139
+ + L +F
Sbjct: 492 LFRMVFLDFRF 502
Score = 25.6 bits (55), Expect = 7.9
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 17/59 (28%)
Query: 1 MFVDHTILKCTFCNIIFNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGD 59
FV+ +L+ + + + ++ E ++P + Y R + D
Sbjct: 81 KFVE-EVLRINY-KFLMSPIKTE---------QRQPSMMTRMYIE------QRDRLYND 122
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.0 bits (51), Expect = 5.4
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK 102
K +C C +L HQ H G K
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKNSG 42
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 23.6 bits (50), Expect = 5.9
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 74 KCSSCNYSCSTKSALSVHQKRH 95
KC C S KSALS HQ+ H
Sbjct: 3 KCGLCERSFVEKSALSRHQRVH 24
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 25.3 bits (54), Expect = 6.4
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVH-QKRHTG 97
+ C +C + H+R C C ++ + H K+H
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKHNI 126
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 23.6 bits (50), Expect = 6.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 70 VKPLKCSSCNYSCSTKSALSVHQKRHTG 97
++P CS C S K + H + HTG
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHTG 28
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 23.0 bits (50), Expect = 8.4
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 63 HMRKHTGVK 71
H R HTG K
Sbjct: 23 HKRTHTGEK 31
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase,
aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Length = 505
Score = 25.2 bits (55), Expect = 9.2
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 27 MTHCKSCKKPKRPDK 41
M + KK R D
Sbjct: 87 MVDNRITKKRYRLDH 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.137 0.438
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,130,970
Number of extensions: 114887
Number of successful extensions: 917
Number of sequences better than 10.0: 1
Number of HSP's gapped: 767
Number of HSP's successfully gapped: 369
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.4 bits)