RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3948
(143 letters)
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 44.4 bits (105), Expect = 5e-08
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
+ + KC C S S S LS H++ HTG
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 24.7 bits (54), Expect = 0.84
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTG 69
Y C C D+ H R HTG
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHTG 37
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 43.2 bits (102), Expect = 1e-07
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 62 GHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
G R TG+KP +C C+ S S L++H+KRH
Sbjct: 1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 41.8 bits (99), Expect = 4e-07
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
H+G KP C C + S S L HQ+ HTG
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG 32
Score = 26.0 bits (58), Expect = 0.25
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTG 69
Y C C + ++ H R HTG
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTG 32
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 40.4 bits (95), Expect = 1e-06
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
R HTG KP CS C+ + K L +H KR+
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 23.9 bits (52), Expect = 1.9
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTG 69
YAC C R+ + H +++
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHD 33
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 39.2 bits (92), Expect = 4e-06
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 65 RKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
R H+G KP +C C+ + + +H +
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT 33
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 37.7 bits (88), Expect = 2e-05
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKR-HTGLKAHKC 103
KP C SC S L+ H K+ HT + HKC
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 30.7 bits (70), Expect = 0.006
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 45 YACFICTYHTRKHGDMIGHMRK-HTGVKPLKC 75
Y C C + + GH+++ HT +P KC
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 35.9 bits (83), Expect = 8e-05
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 67 HTGVKPLKCSSCNYSCSTKSALSVHQKRHTG 97
+G +P C C + +TK+ + H K HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 22.4 bits (48), Expect = 7.0
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTG 69
+ C IC + H++ HT
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHTD 32
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 35.4 bits (82), Expect = 1e-04
Identities = 9/29 (31%), Positives = 9/29 (31%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
K C C LS H K H K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 28.8 bits (65), Expect = 0.027
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVK 71
+AC C + + H++ H K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 34.5 bits (80), Expect = 2e-04
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTG 97
KP +C C + S L+ H + HTG
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 24.9 bits (55), Expect = 0.73
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTG 69
+ C IC + + + H+R HTG
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTG 28
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 34.1 bits (79), Expect = 3e-04
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLK 99
+ C C + + + L H + HT K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.4 bits (59), Expect = 0.16
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTGVK 71
+ C +CT + + H R HT K
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 34.1 bits (78), Expect = 4e-04
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 2/41 (4%)
Query: 61 IGHMRKHTGVKPLKCSSC--NYSCSTKSALSVHQKRHTGLK 99
I K K +C + + + H + H +
Sbjct: 7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.2 bits (60), Expect = 0.13
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 40 DKSYNYACFICTYHTRKHGDMIGHMRKHTGVK 71
DK++ CT ++ ++ H++ H +
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 33.6 bits (76), Expect = 5e-04
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 72 PLKCSSCNYSCSTKSALSVHQKRH 95
P KCS C+YSCS+K+AL +H++ H
Sbjct: 2 PEKCSECSYSCSSKAALRIHERIH 25
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 33.1 bits (75), Expect = 0.001
Identities = 13/46 (28%), Positives = 15/46 (32%)
Query: 50 CTYHTRKHGDMIGHMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRH 95
C HM H G++P C C K L H K H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 24.3 bits (52), Expect = 1.8
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
K C C S + KS H H GL+ + C
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGC 33
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 32.4 bits (74), Expect = 0.001
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 74 KCSSCNYSCSTKSALSVHQKRHTGLKAHKC 103
+C S + K L H K H+ + + C
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
Score = 29.3 bits (66), Expect = 0.018
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 42 SYNYACFICTYHTRKHGDMIGHMRKHTGVKPLKC 75
S++ C + HM+ H+ + C
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 34
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 31.9 bits (72), Expect = 0.002
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTG 97
+P KC C Y+ S L+VH + HTG
Sbjct: 2 RPFKCQICPYASRNSSQLTVHLRSHTG 28
Score = 26.9 bits (59), Expect = 0.12
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 45 YACFICTYHTRKHGDMIGHMRKHTG 69
+ C IC Y +R + H+R HTG
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTG 28
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 31.1 bits (71), Expect = 0.004
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 71 KPLKCSS--CNYSCSTKSALSVHQKRHTGLK 99
+P C+ C + L H++ HTG K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 23.4 bits (51), Expect = 2.3
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 41 KSYNYACFICTYHTRKHGDMIGHMRKHTGVK 71
+ + C + ++ H R HTG K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 30.0 bits (68), Expect = 0.010
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 71 KPLKCS--SCNYSCSTKSALSVHQKRHTG 97
KP KC+ C S S L H + HTG
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG 29
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 29.5 bits (67), Expect = 0.013
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHT 96
KP KC C + S S L HQ+ HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 29.2 bits (66), Expect = 0.019
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 71 KPLKCS--SCNYSCSTKSALSVHQKRHTG 97
+P C SC+ S + L+ H + HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 28.1 bits (63), Expect = 0.049
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 71 KPLKCS--SCNYSCSTKSALSVHQKRHTG 97
KP +C+ C S L H + HTG
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG 29
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 28.1 bits (63), Expect = 0.053
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 71 KPLKCS--SCNYSCSTKSALSVHQKRHTG 97
+P C C+ + L H+K H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>d2gnra1 b.40.4.15 (A:8-144) Hypothetical protein SSO2064
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 137
Score = 28.0 bits (62), Expect = 0.26
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 17 FNKLQDEELIMTHCKSCKKPKRPDKSYNYACFICTYHTRKHGDMIGHMRKHT 68
FN L+ ++I + C C + P +SY CF+ + + ++ +T
Sbjct: 29 FNGLKQNKIIGSKCSKCGRIFVPARSYCEHCFVKIENYVEINKDEAYVDSYT 80
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.9 bits (56), Expect = 0.28
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 70 VKPLKCSSCNYSCSTKSALSVHQKRHT 96
VKP KC +C+Y+ + S+L+ H + H+
Sbjct: 1 VKPYKCKTCDYAAADSSSLNKHLRIHS 27
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 24.7 bits (53), Expect = 0.97
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 73 LKCSSCNYSCSTKSALSVHQKRHTGLK 99
++C +C+ +K L VH ++HTG K
Sbjct: 1 VECPTCHKKFLSKYYLKVHNRKHTGEK 27
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.8 bits (52), Expect = 1.7
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 71 KPLKCS--SCNYSCSTKSALSVHQKRHT 96
+P C CN + + L H H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 25.0 bits (54), Expect = 2.0
Identities = 6/40 (15%), Positives = 12/40 (30%)
Query: 63 HMRKHTGVKPLKCSSCNYSCSTKSALSVHQKRHTGLKAHK 102
+ KC+ C+ +C + L + H
Sbjct: 29 QWLEGNLPVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHT 68
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 23.3 bits (50), Expect = 2.7
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 71 KPLKCSS--CNYSCSTKSALSVHQKRHT 96
KP C++ C + + L+VH+ +H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 23.2 bits (49), Expect = 3.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 74 KCSSCNYSCSTKSALSVHQKRH 95
KC C S KSALS HQ+ H
Sbjct: 2 KCGLCERSFVEKSALSRHQRVH 23
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 23.1 bits (49), Expect = 3.4
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 72 PLKCSSCNYSCSTKSALSVHQKRHTG 97
P KC C S K L H + HTG
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHTG 26
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.0 bits (49), Expect = 3.4
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTG 97
+P KC+ C++ S LS H K+ G
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFHG 27
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 23.1 bits (50), Expect = 3.8
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQKRHTGLKA 100
+ CS C + AL H H +A
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHRRDRA 33
>d2foka3 a.4.5.12 (A:287-386) Restriction endonuclease FokI,
N-terminal (recognition) domain {Flavobacterium
okeanokoites [TaxId: 244]}
Length = 100
Score = 24.1 bits (52), Expect = 4.1
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 112 MYHILEIMLEDIQGRDHINVNIAL 135
++E + DI+G + + I +
Sbjct: 51 FDEVIETIENDIKGLINTGIFIEI 74
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 22.1 bits (47), Expect = 6.1
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 75 CSSCNYSCSTKSALSVHQKRHTGLK 99
C C S L H + HT ++
Sbjct: 4 CEECGIRAKKPSMLKKHIRTHTDVR 28
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 22.0 bits (46), Expect = 8.9
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 71 KPLKCSSCNYSCSTKSALSVHQK 93
K +C C + + S L H K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIK 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.137 0.438
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 546,556
Number of extensions: 24542
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 89
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (22.9 bits)