BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3949
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 53 MKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
+ HLR H+GEKPYKC FC+Y Q LR H++ H
Sbjct: 20 LNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
F C C + + S + +H+R H+GEKP+ C C +S +RH I+H++
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL 57
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMK 86
+ C TC Y S S+ HLR HS E+P+KC C Y S L H++
Sbjct: 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR 85
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 40 CYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
C C + +K+H+R H+G KPYKC CDY S L +H++I
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGE 63
F C CPY + S + HLR H+G+
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 30 SRPDHNYRFVCY----TCPYHTTYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRR 83
S PD R + Y C T S +K+HLR H+GEKPYKC + CD+ +S L R
Sbjct: 6 SGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTR 65
Query: 84 HMK 86
H +
Sbjct: 66 HYR 68
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMK 86
Y+ C + S + H RKH+G KP++C C+ ++S L HMK
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
F C C + + S + +H+R H+GEKP+ C C +S +RH KI
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 41 YTCPYHT-----TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMK 86
Y CP + + S ++ H+R H+G+KP++C C + ++S L H++
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 55
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESS 94
F C C + + S + +H+R H+GEKP+ C C +S +RH KI HL +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI-HLRQKD 90
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 41 YTCPYHT-----TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSN 95
Y CP + + S + H+R H+G+KP++C C + ++S L H++ H E
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 96 SHDI 99
+ DI
Sbjct: 64 ACDI 67
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
F C C + + S + +H+R H+GEKP+ C C +S +RH KI
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 41 YTCPYHT-----TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSN 95
Y CP + + S + H+R H+G+KP++C C + ++S L H++ H E
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 96 SHDI 99
+ DI
Sbjct: 64 ACDI 67
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESS 94
F C C + + S + +H+R H+GEKP+ C C +S +RH KI HL +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI-HLRQKD 90
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 41 YTCPYHT-----TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSN 95
Y CP + + S + H+R H+G+KP++C C + ++S L H++ H E
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 96 SHDI 99
+ DI
Sbjct: 64 ACDI 67
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
F C C + + S + +H+R H+GEKP+ C C +S +RH KI
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 32.3 bits (72), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 41 YTCPYHT-----TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSN 95
Y CP + + S S+ H+R H+G+KP++C C + ++S L H++ H E
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 96 SHDI 99
+ DI
Sbjct: 64 ACDI 67
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 63 EKPYKCLF--CDYHCTQSGPLRRHMKI 87
E+PY C CD +QSG L RH++I
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRI 28
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
F C C + + S + +H+R H+GEKP+ C C +S +RH KI
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 83
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 41 YTCPYHT-----TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSN 95
Y CP + + S + H+R H+G+KP++C C + ++S L H++ H E
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 62
Query: 96 SHDI 99
+ DI
Sbjct: 63 ACDI 66
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
F C C + + S + +H+R H+GEKP+ C C +S +RH KI
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 41 YTCPYHT-----TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSN 95
Y CP + + S + H+R H+G+KP++C C + ++S L H++ H E
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPF 63
Query: 96 SHDI 99
+ DI
Sbjct: 64 ACDI 67
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIK 88
+++C C +K H+R H+ +PY C +C++ G L +HMK K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
+ C C + S +++ H R H+GEKPYKC C +QS L++H +
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT 54
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
+ C C + S ++ H R H+GEKPYKC C ++S L RH +
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRT 82
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 52 SMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
S S R HSGEKPY+C C TQSG ++ H+ KH
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH 39
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
+ C C + S + H R H+GEKPYKCL C +Q+ L H +I
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
FVC C + +K H R H+ EKPY C C+ T+ L RH + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 41 YTCPYHT-----TYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
+ CP+ S+++K H R H+GEKP+KC F CD S ++HM +
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 28 YISRPDHNYRFVCY--TCPYHTTYSQS---MKSHLRKHSGEKPYKCLF 70
++ P+ N VCY CP ++ + +H+R H+GEKP+ C F
Sbjct: 49 HVGGPEQN-NHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPF 95
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 37 RFVCYTCPY---HTTYSQS--MKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMK 86
R +TC Y TY++S +K+HLR H+GEKPY C + C + +S L RH +
Sbjct: 3 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 59
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 43 CPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMK 86
C + S + H RKH+G +P++C CD ++S L HMK
Sbjct: 44 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 87
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Query: 37 RFVCYTCPY---HTTYSQS--MKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMK 86
R +TC Y TY++S +K+HLR H+GEKPY C + C + +S L RH +
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 58
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 43 CPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMK 86
C + S + H RKH+G +P++C CD ++S L HMK
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
F C C + + S+ +H+R H+GEKP+ C C RH KI
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKI 84
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 41 YTCPYHT---TYSQ--SMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSN 95
Y CP + +SQ ++ +H+R H+G+KP++C C + +Q L H++ H E
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT-HTGEKPF 63
Query: 96 SHDI 99
+ DI
Sbjct: 64 ACDI 67
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC 71
R+ C C ++S + H R H+GEKPYKC C
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRH 84
F C TC + S +K+H R H+GEKP+ C + C +S L RH
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 43 CPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
C + S +K H R+H+G KP++C C ++S L+ H +
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
+ C C + + + H R H+GEKPYKC C +Q LR H +
Sbjct: 50 YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT 99
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
+ C C + S + H R H+GEKPYKC C + L RH +
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 41 YTCPY-HTTYSQ--SMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
Y CP ++SQ ++++H R H+GEKPY C C +Q LR H +
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT 127
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 41 YTCPY-HTTYSQ--SMKSHLRKHSGEKPYKCLFC 71
Y CP ++SQ +++H R H+GEKPYKC C
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC 71
+ C C + ++ +H R H+GEKPYKC C
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
+ C C Y ++ SH H+GEKPY+C C + L+ H +I
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKP 65
+ C C ++K+H R HSGEKP
Sbjct: 46 YRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 41 YTCPYHT---TYSQ--SMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSN 95
Y CP + +SQ ++ +H+R H+G+KP++C C + +Q L +H++ H E
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTGEKPF 63
Query: 96 SHDI 99
+ DI
Sbjct: 64 ACDI 67
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESS 94
F C C + + + H+R H+GEKP+ C C RH KI HL +
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKI-HLRQKD 90
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 24/58 (41%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSN 95
F C C ++ H+ H+GE PYKC C Q L+ HM H SS
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSSG 124
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 53 MKSHLRKHSGEKPYKCLFCD 72
+K H RKH+GEKP++C C
Sbjct: 23 LKVHNRKHTGEKPFECPKCG 42
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 41 YTCPYHT-----TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMK 86
Y CP + + S + H+R H+G+KP++C C + ++S L H++
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
>pdb|3T2U|A Chain A, Structure Of Wuchereria Bancrofti Pi-Class Glutathione
S-Transferase
pdb|3T2U|B Chain B, Structure Of Wuchereria Bancrofti Pi-Class Glutathione
S-Transferase
Length = 208
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 52 SMKSHLRKHSGEKPYKCLF-CDYHCTQSGPLRRHMKIKHLMESSNSHDITFV 102
SMKSH H G+ P CL+ D+ QSG + RH+ KH + N + T +
Sbjct: 40 SMKSHF--HFGQLP--CLYDGDHQIVQSGAILRHLARKHNLNGGNELETTHI 87
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain
Bound To The Adeno-Associated Virus P5 Initiator
Element
Length = 124
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 39 VCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
VC C S +K H H+GEKP++C F C + LR H++I
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI 86
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 52 SMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHM 85
++++H+R H+G++PY C F C+ QS L+ H+
Sbjct: 79 NLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
F+C C H T S ++ H R H+ E+PY C C + LR H I
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI 67
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 53 MKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
+K+H R H+GEKP+ C + C+ +S L RH +
Sbjct: 35 LKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 51 QSMKSHLRKHSGEKPYKC 68
+++K+HLR H+GEKPY C
Sbjct: 83 ENLKTHLRSHTGEKPYMC 100
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 56 HLRKHSGEKPYKCLF 70
H+R+H+GEKP+KC F
Sbjct: 58 HMRRHTGEKPHKCTF 72
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 47 TTYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKIKH 89
+ S K R HS EKPY C C T LR+H+K H
Sbjct: 110 SNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMKIKHLME 92
K Y+C +C+Y S L+ H+K KH E
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHSKE 29
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 37 RFVCYTCPYHTTYSQSMK--SHLRKHSGEKPYKC 68
R++C Y+++ K +HL KH+GEKP+ C
Sbjct: 3 RYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPC 36
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 52 SMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMK 86
+++ H R H ++P+KC +C + Q L +HMK
Sbjct: 24 ALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 53 MKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMK 86
MK H H+GEKP+KC C +QS L H +
Sbjct: 45 MKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
F C C S ++ +HL HS +PY C +C Q +++H I
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI 51
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 18/38 (47%)
Query: 52 SMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
S S R H+GEKPY C CD Q L H K H
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMKIKHLME 92
K Y+C +C++ S L+ H+K KH E
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 40 CYTCPYHTTYSQSMKSHLRKHSGEK 64
C C T S ++K HLR HSGEK
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 65 PYKCLFCDYHCTQSGPLRRHMKI 87
P KC C T SG L+RH++I
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRI 24
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEK 64
+ C C Y + ++ HLRKH+GEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
Length = 190
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 37 RFVCYTCPYHTTYSQSMK--SHLRKHSGEKPYKC 68
R++C Y+++ K +HL KH+GEKP+ C
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPC 45
>pdb|1US1|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1US1|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|A Chain A, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|1PU4|B Chain B, Crystal Structure Of Human Vascular Adhesion Protein-1
pdb|2Y73|A Chain A, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y73|B Chain B, The Native Structures Of Soluble Human Primary Amine
Oxidase Aoc3
pdb|2Y74|A Chain A, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
pdb|2Y74|B Chain B, The Crystal Structure Of Human Soluble Primary Amine
Oxidase Aoc3 In The Off-Copper Conformation
Length = 763
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 43 CPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRH 84
CPY TY L + K + FC + Q PLRRH
Sbjct: 404 CPYLATYVDW--HFLLESQAPKTIRDAFCVFEQNQGLPLRRH 443
>pdb|4A57|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A59|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
Length = 611
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 11/55 (20%)
Query: 32 PDHNYRFVCYTCPYHTT---------YSQSMKSHLRKHSGEKPYKCLFCDYHCTQ 77
P H Y+F +T P+ T ++ +HL + GE P +C+ +Y Q
Sbjct: 191 PAHGYKF--FTNPFWTRPITGAEEGLFAFITLNHLSRRLGEDPARCMIDEYGVKQ 243
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 61 SGEKPYKCLFCDYHCTQSGPLRRHMKI 87
SGEKPY+C C +Q G L H ++
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERL 32
>pdb|2C10|A Chain A, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|B Chain B, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|C Chain C, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C10|D Chain D, The Structure Of A Truncated, Soluble Version Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|A Chain A, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|B Chain B, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|C Chain C, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
pdb|2C11|D Chain D, Crystal Structure Of The 2-Hydrazinopyridine Of
Semicarbazide-Sensitive Amine Oxidase
Length = 735
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 43 CPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRH 84
CPY TY L + K + FC + Q PLRRH
Sbjct: 376 CPYLATYVDW--HFLLESQAPKTIRDAFCVFEQNQGLPLRRH 415
>pdb|3ALA|A Chain A, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|B Chain B, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|C Chain C, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|D Chain D, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|E Chain E, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|F Chain F, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
pdb|3ALA|G Chain G, Crystal Structure Of Vascular Adhesion Protein-1 In Space
Group C2
Length = 748
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 43 CPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRH 84
CPY TY L + K + FC + Q PLRRH
Sbjct: 389 CPYLATYVDW--HFLLESQAPKTIRDAFCVFEQNQGLPLRRH 428
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 63 EKPYKCLFCDYHCTQSGPLRRHMKI 87
EKPYKC C +Q+ L RH +I
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRI 34
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMKIKHLME 92
K Y+C +C+ S L+ H+K KH E
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKHSKE 29
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMKIKHLME 92
K Y+C +C+ S L+ H+K KH E
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKHSKE 29
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 62 GEKPYKCLFCDYHCTQSGPLRRHMKIKHL 90
GE+ + + D C+ +G +RRH IK L
Sbjct: 312 GEQQFDRILLDAPCSATGVIRRHPDIKWL 340
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEK 64
F C TC + S +K+H R H+GEK
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 61 SGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNS 96
SGEKPY C C TQS L H ++ H ES S
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRV-HTGESGPS 40
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEK 64
F C C Y T ++K+H+ +HS EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKP 65
F C C T S S+ H R H+GEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Protein In Complex With Methylated Cpg Site Dna
Length = 133
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCD 72
++C C S++ H HS EK Y C +C+
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCE 57
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKP 65
F C C T + + SH R H+GEKP
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMKIKHLME 92
K Y+C +C+ S L+ H+K KH E
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKE 29
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 40 CYTCPYHTTYSQSMKSHLRKHSGEK 64
C C T + S+ +H+R+H+GEK
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKP 65
F C C + S + +H R H+GEKP
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMKIK 88
+PY C +C++ G L +HMK K
Sbjct: 1 RPYHCSYCNFSFKTKGNLTKHMKSK 25
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 63 EKPYKCLFCDYHCTQSGPLRRHMKI 87
EKPYKC C Q LR H+ I
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLI 33
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 63 EKPYKCLFCDYHCTQSGPLRRHMKI 87
EKPYKC C TQ+ L RH ++
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRV 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.134 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,206,501
Number of Sequences: 62578
Number of extensions: 112987
Number of successful extensions: 519
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 217
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)