RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3949
(103 letters)
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 52.1 bits (126), Expect = 8e-11
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 40 CYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
C C Y + +++ H R H ++P+KC +C + Q L +HMK
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 44.0 bits (105), Expect = 1e-07
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 58 RKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S P KC C Y C+ LR H +I
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERI 31
Score = 27.8 bits (63), Expect = 0.20
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 40 CYTCPYHTTYSQSMKSHLRKHSGEKPYKC 68
C C + T ++ H++K G+
Sbjct: 40 CNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 49.4 bits (119), Expect = 1e-09
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 52 SMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
S S R HSGEKPY+C C TQSG ++ H+ KH
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH 39
Score = 44.8 bits (107), Expect = 6e-08
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGE--KPYKCLFCDYHCTQSGPLRRHMKIKH 89
+ CY C T S +MK H+ + E + C CD + L H++ +H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 26.3 bits (59), Expect = 0.71
Identities = 10/30 (33%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRK-HSGEKPY 66
F C C + HLRK HS P
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 47.4 bits (113), Expect = 8e-09
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHS---GEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
C C + S+ H RKH+ + C FC + + H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 38.2 bits (89), Expect = 2e-05
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 60 HSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
SG +C C + C Q L H +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRK 29
Score = 25.4 bits (56), Expect = 2.0
Identities = 6/31 (19%), Positives = 8/31 (25%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC 68
F C C S+ +H K
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 44.4 bits (106), Expect = 2e-07
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S + +H+R H+GEKP+ C C +S +RH KI
Sbjct: 47 SDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 40.9 bits (97), Expect = 3e-06
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 41 YTCPYHT---TYSQS--MKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
Y CP + +SQS + H+R H+G+KP++C C + ++S L H++
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 28.2 bits (64), Expect = 0.17
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 63 EKPYKCLF--CDYHCTQSGPLRRHMKI 87
E+PY C CD +QSG L RH++I
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRI 28
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 43.2 bits (101), Expect = 2e-07
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
+++C C +K H+R H+ +PY C +C++ G L +HMK
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 24.7 bits (53), Expect = 2.4
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEK 64
+ C C + ++ H++ + K
Sbjct: 30 YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 42.5 bits (101), Expect = 1e-06
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +K H R+H+G KP++C C ++S L+ H +
Sbjct: 51 SDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
Score = 39.0 bits (92), Expect = 3e-05
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 41 YTCPYHT---TYSQS--MKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
+ C Y Y + ++ H RKH+GEKPY+C F C+ ++S L+RH +
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Score = 38.7 bits (91), Expect = 3e-05
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
F C TC + S +K+H R H+GEKP+ C + C +S L RH +
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 28.6 bits (65), Expect = 0.20
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 61 SGEKPYKC--LFCDYHCTQSGPLRRHMKI 87
S ++P+ C C+ + L+ H +
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRK 30
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 41.6 bits (99), Expect = 2e-06
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 40 CYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
C TC Y S S+ HLR HS E+P+KC C Y S L H++
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRS 86
Score = 40.1 bits (95), Expect = 6e-06
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
+ +K+H+R H+G KPYKC CDY S L +H++I
Sbjct: 19 SRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Score = 34.3 bits (80), Expect = 0.001
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 60 HSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
P+KC C ++ L+ HM+
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRC 30
Score = 31.6 bits (73), Expect = 0.012
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 40 CYTCPYHTTYSQSMKSHLRKHSGEKPYKC 68
C CPY + S + HLR H+G+
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 41.5 bits (98), Expect = 2e-06
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S + H RKH+G KP++C C+ ++S L HMK
Sbjct: 60 SDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 40.3 bits (95), Expect = 7e-06
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 41 YTCPYHT---TYSQS--MKSHLRKHSGEKPYKC--LFCDYHCTQSGPLRRHMKI 87
+ C Y Y++S +K+HLR H+GEKPYKC CD+ +S L RH +
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 40.6 bits (96), Expect = 4e-06
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
F C C + + S + +H+R H+GEKP+ C C +S +RH I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 30.5 bits (70), Expect = 0.027
Identities = 5/37 (13%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMK 86
S K H P + +++ L +
Sbjct: 44 SDERKRHRDIQ-HILPILEDKVEELLSKNYHLENEVA 79
Score = 27.5 bits (62), Expect = 0.36
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMKI 87
KP++C C + ++S L H++
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT 25
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 40.2 bits (95), Expect = 4e-06
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 38 FVCYTCPYHTTYSQSMKSHLR--KHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
+ C C T+ + H K Y C FC T+ + H+KI H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 35.2 bits (82), Expect = 3e-04
Identities = 9/32 (28%), Positives = 10/32 (31%)
Query: 58 RKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
GE Y+C C T RH H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH 34
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 39.4 bits (93), Expect = 4e-06
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
GEKPYKC C Q LR H+ I
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI 33
Score = 26.7 bits (60), Expect = 0.34
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 40 CYTCPYHTTYSQSMKSHLRKHSGEKPY 66
C TC +++H+ H+G P
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPS 40
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 39.4 bits (93), Expect = 1e-05
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S + H RKH+G +P++C CD ++S L HMK
Sbjct: 50 SDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 38.3 bits (90), Expect = 3e-05
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 48 TYSQS--MKSHLRKHSGEKPYKC--LFCDYHCTQSGPLRRHMKI 87
TY++S +K+HLR H+GEKPY C C + +S L RH +
Sbjct: 16 TYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Score = 26.0 bits (58), Expect = 1.2
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 59 KHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
K + C T+S L+ H++
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRT 29
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 38.8 bits (91), Expect = 1e-05
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S + H+R H+G+KP++C C + ++S L H++
Sbjct: 34 SDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 29.6 bits (67), Expect = 0.042
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 52 SMKSHLRKHS--GEKPYKC--LFCDYHCTQSGPLRRHMKI 87
++L + +PY C CD ++S L RH++I
Sbjct: 4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRI 43
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 1e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S GEK +KC CD +Q+ LR H +
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNV 34
Score = 29.0 bits (66), Expect = 0.041
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
+ + S++ H H GEKP
Sbjct: 23 SQASSLRLHQNVHVGEKPSGP 43
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 38.6 bits (91), Expect = 2e-05
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
Y ++ SH H+GEKPY+C C + L+ H +I
Sbjct: 28 RYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI 67
Score = 37.8 bits (89), Expect = 3e-05
Identities = 10/38 (26%), Positives = 12/38 (31%)
Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
H +KPYKC C G L H +
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV 39
Score = 24.3 bits (54), Expect = 4.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 48 TYSQSMKSHLRKHSGEKPY 66
++K+H R HSGEKPY
Sbjct: 56 NRPANLKTHTRIHSGEKPY 74
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 38.5 bits (90), Expect = 2e-05
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 41 YTCPYHT---TYSQS--MKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
+ C + TY +S +K+H R H+GEKP+ C + C+ +S L RH +
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 25.4 bits (56), Expect = 1.7
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 2/40 (5%)
Query: 50 SQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
S S + + C C +S L+ H +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT 41
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 38.2 bits (90), Expect = 2e-05
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
FVC C + +K H R H+ EKPY C C+ T+ L RH + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 23.6 bits (52), Expect = 5.9
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMKI 87
+ + C C + L+RH +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 39.4 bits (93), Expect = 2e-05
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 41 YTCPYHT-----TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
CP+ + +M+ HL H G + + C C +S L+RH +
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLV 56
Score = 37.5 bits (88), Expect = 9e-05
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
VC C S +K H H+GEKP++C F C + LR H++I
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI 86
Score = 37.5 bits (88), Expect = 1e-04
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 41 YTCPYHT-----TYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
+ C + + ++++H+R H+G++PY C F C+ QS L+ H+
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 28.3 bits (64), Expect = 0.24
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 41 YTCPYHT-----TYSQSMKSHLRKHSGEKPYK 67
Y CP+ S ++KSH+ H+ K +
Sbjct: 93 YVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 24.4 bits (54), Expect = 5.7
Identities = 4/27 (14%), Positives = 9/27 (33%), Gaps = 2/27 (7%)
Query: 63 EKPYKCLF--CDYHCTQSGPLRRHMKI 87
+ C C + +R+H+
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHT 29
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 37.7 bits (88), Expect = 2e-05
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 55 SHLRKHSGEKPYKC--LFCDYHCTQSGPLRRHMKI 87
S +GEKP+ C C + ++S L RH +
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS 36
Score = 28.8 bits (65), Expect = 0.065
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 50 SQSMKSHLRKHSGEKPYKC 68
S + H R HSG KP
Sbjct: 27 SDELSRHRRSHSGVKPSGP 45
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 38.7 bits (91), Expect = 2e-05
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 52 SMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S S R H+GEKPY C CD Q L H K
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKR 37
Score = 33.3 bits (77), Expect = 0.002
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 48 TYSQSMKSHLRKHSGE----KPYKCLFCDYHCTQSGPLRRHMKI 87
Q + H +++ + C C T+ + RH
Sbjct: 26 RQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Score = 31.3 bits (72), Expect = 0.013
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC 71
FVC C T +M H +G +
Sbjct: 48 FVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPYKC C T LR H K
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC 34
Score = 29.0 bits (66), Expect = 0.048
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
T+ ++ H + H+GE+
Sbjct: 23 TWKSRLRIHQKCHTGERHSGP 43
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 39.3 bits (93), Expect = 4e-05
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
+ + + H R H+GEKPYKC C +Q LR H +
Sbjct: 60 SDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT 99
Score = 38.6 bits (91), Expect = 6e-05
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
+ +++H R H+GEKPYKC C ++ L H +
Sbjct: 116 SQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT 155
Score = 38.2 bits (90), Expect = 9e-05
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
+ ++ +H R H+GEKPYKC C ++ L H +
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 37.8 bits (89), Expect = 1e-04
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
+ ++++H R H+GEKPY C C +Q LR H +
Sbjct: 88 SQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT 127
Score = 37.8 bits (89), Expect = 1e-04
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
+ S + H R H+GEKPYKC C + L RH +
Sbjct: 32 SRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT 71
Score = 37.4 bits (88), Expect = 2e-04
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S S + GEKPY C C ++S L H +
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRT 43
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 38.0 bits (89), Expect = 4e-05
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
+K H H+ + PY+C CD + L+RH K+
Sbjct: 14 KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 55
Score = 33.0 bits (76), Expect = 0.003
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
+K H + H+G K C + +H+ H
Sbjct: 46 PSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 36.7 bits (86), Expect = 5e-05
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
GEKPY C C L+ H++I
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 30.2 bits (69), Expect = 0.017
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPY 66
+ C C + Q++KSHLR H+G P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 8e-05
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPY+C C T L H KI
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI 34
Score = 27.1 bits (61), Expect = 0.28
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
T ++ +H + H+GEKP
Sbjct: 23 TDRSNLFTHQKIHTGEKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 1e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S SGEKP+KC C TQ+ L H ++
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV 34
Score = 28.3 bits (64), Expect = 0.099
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
T + + SH R H+GEKP
Sbjct: 23 TQNSQLHSHQRVHTGEKPSGP 43
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 37.0 bits (87), Expect = 1e-04
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +K + C FC H T+S L H +
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERT 39
Score = 34.7 bits (81), Expect = 8e-04
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
T S ++ H R H+ E+PY C C + LR H I
Sbjct: 28 TKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI 67
Score = 33.9 bits (79), Expect = 0.002
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
++ H HS EKP+KC C QS L H +
Sbjct: 58 QDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
Score = 27.8 bits (63), Expect = 0.33
Identities = 3/21 (14%), Positives = 6/21 (28%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
S+++ H H
Sbjct: 84 CQSRTLAVHKTLHMQTSSPTA 104
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 37.6 bits (88), Expect = 1e-04
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 41 YTCPYHT---TYSQS--MKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKIKH 89
+ C + +YS+ +K+HLR H+GEKPY C C + + +H H
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 37.2 bits (87), Expect = 2e-04
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 50 SQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
+ H+R+H+GEKP+KC F C ++ L+ H++
Sbjct: 52 QYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91
Score = 36.4 bits (85), Expect = 4e-04
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 41 YTCPYHT-----TYSQSMKSH-LRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
Y C + + + H R HS EKPY C C T LR+H+K
Sbjct: 98 YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 31.0 bits (71), Expect = 0.029
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 8/46 (17%)
Query: 50 SQSMKSHLRK---HSGEKPYKCLFCDYHC-----TQSGPLRRHMKI 87
+ + H+ H K + C + L HM+
Sbjct: 16 QEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Score = 28.3 bits (64), Expect = 0.29
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 63 EKPYKCLFCDYHCTQSGPLRRHMKIKH 89
E + C L H+ +H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEH 27
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 37.1 bits (87), Expect = 1e-04
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMK 86
+K H RKH+GEKP++C C + L H
Sbjct: 18 LSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEA 56
Score = 36.7 bits (86), Expect = 2e-04
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESS 94
++ H+ H+GE PYKC C Q L+ HM H SS
Sbjct: 77 RRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSS 123
Score = 35.6 bits (83), Expect = 6e-04
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 7/43 (16%)
Query: 52 SMKSHLRKH-------SGEKPYKCLFCDYHCTQSGPLRRHMKI 87
K +L +H E+ + C C + LR HM
Sbjct: 46 FRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS 88
Score = 32.9 bits (76), Expect = 0.005
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 60 HSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
SG +C C L+ H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRK 29
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 1e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPYKC C T+ L H +
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS 34
Score = 27.5 bits (62), Expect = 0.17
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ KS L + H+GE+
Sbjct: 23 TRKSGLHIHQQSHTGERHSGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 1e-04
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPYKC C L H K+
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV 34
Score = 27.5 bits (62), Expect = 0.15
Identities = 6/21 (28%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ K +L + H+GE+P
Sbjct: 23 NSKFNLDMHQKVHTGERPSGP 43
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 36.7 bits (86), Expect = 1e-04
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
+ H HSGEKPY C C + + H++
Sbjct: 18 RDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS 57
Score = 32.5 bits (75), Expect = 0.006
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 48 TYSQSMKSHLRKHSGE--KPYKCLFCDYHCTQSGPLRRHMKIKH 89
M H+R H G KPY C C ++ L H+K H
Sbjct: 46 KRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 32.5 bits (75), Expect = 0.006
Identities = 7/28 (25%), Positives = 7/28 (25%)
Query: 60 HSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
SG C C L RH
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLS 29
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 35.6 bits (83), Expect = 1e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +G PYKC C+ + L H ++
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM 34
Score = 27.5 bits (62), Expect = 0.15
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
+ + H R H+ EKP
Sbjct: 23 SGKLRLLVHQRMHTREKPSGP 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 35.2 bits (82), Expect = 2e-04
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
GEKPY+C C +Q G L H+++
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV 33
Score = 24.5 bits (54), Expect = 2.5
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 40 CYTCPYHTTYSQSMKSHLRKHSGEKPY 66
C C + S+ H+R H+G P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 2e-04
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPYKC C TQ+ L H +I
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRI 34
Score = 27.1 bits (61), Expect = 0.23
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ SHL R H+G KP
Sbjct: 23 TQNSHLANHQRIHTGVKPSGP 43
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 37.3 bits (87), Expect = 2e-04
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 41 YTCPYHT---TYSQS--MKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
+ CP+ +++S +K H R H+GEKP+KC F CD S ++HM +
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Score = 34.6 bits (80), Expect = 0.002
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
S + CD + L H+ ++H
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 34.2 bits (79), Expect = 0.002
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 50 SQSMKSHLRKHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
+ +H+R H+GEKP+ C F C +S L+ H +
Sbjct: 75 KYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
Score = 30.7 bits (70), Expect = 0.044
Identities = 6/59 (10%), Positives = 15/59 (25%), Gaps = 9/59 (15%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHC---------TQSGPLRRHMKI 87
+C + + +H+ P + Y L H+++
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Score = 29.2 bits (66), Expect = 0.16
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 41 YTCPYHT---TYSQS--MKSHLRKHSGEKPYKC 68
+ C + ++ S K H+ H+ +K
Sbjct: 121 FKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 2e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S SGEKPYKC+ C + L H ++
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV 34
Score = 27.1 bits (61), Expect = 0.26
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ L R H+GEK
Sbjct: 23 KRRLDLDFHQRVHTGEKLSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 35.2 bits (82), Expect = 2e-04
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPYKC C L H +
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMV 34
Score = 27.5 bits (62), Expect = 0.17
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
+ + +H H+GEKP
Sbjct: 23 ICRRDLYTHHMVHTGEKPSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 2e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S S EKPYKC C + L H ++
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV 34
Score = 26.7 bits (60), Expect = 0.32
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 56 HLRKHSGEKPYKC 68
H R H GEK
Sbjct: 31 HQRVHMGEKTSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.9 bits (81), Expect = 3e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKP++C C + + S L +H++
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 30.6 bits (70), Expect = 0.010
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC 68
F C C + ++S S+ HLR H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 3e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKP+KC C L RH +
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV 34
Score = 27.1 bits (61), Expect = 0.21
Identities = 5/21 (23%), Positives = 7/21 (33%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
+ H H+ EKP
Sbjct: 23 CGRSRLNRHSMVHTAEKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 3e-04
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GE+PY C C T L +H KI
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKI 34
Score = 27.1 bits (61), Expect = 0.25
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC 68
++C C T ++ H + H+GEKP
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 34.8 bits (81), Expect = 3e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKP+KC+ C ++ L H K+
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL 34
Score = 27.5 bits (62), Expect = 0.17
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC 68
F C C + ++ H + H+GEKP
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 35.5 bits (83), Expect = 3e-04
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
MK H H+GEKP+KC C +QS L H +
Sbjct: 40 HQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRK 79
Score = 34.7 bits (81), Expect = 5e-04
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
HL HS +PY C +C Q +++H I
Sbjct: 20 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI 51
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 34.6 bits (80), Expect = 3e-04
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
GE PY C C TQ G L H +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS 33
Score = 24.9 bits (55), Expect = 1.5
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYK 67
++C C T S+ H R S P
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 3e-04
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPY C C T L +H KI
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKI 34
Score = 27.1 bits (61), Expect = 0.24
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC 68
++C C T ++ H + H+ +KP
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 3e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +G+K +KC C TQS L H +I
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI 34
Score = 27.5 bits (62), Expect = 0.16
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
T S S+ H R H+GEKP
Sbjct: 23 TQSSSLTVHQRIHTGEKPSGP 43
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 3e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S SGEKP+KC C Q+ L H++I
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRI 34
Score = 27.1 bits (61), Expect = 0.22
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 56 HLRKHSGEKPYKC 68
HLR H+GEKP
Sbjct: 31 HLRIHTGEKPSGP 43
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 35.9 bits (84), Expect = 3e-04
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
T+ H+ H G +PY C C L HMKI
Sbjct: 20 THKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 59
Score = 30.5 bits (70), Expect = 0.037
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 58 RKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
SG+K Y C C T RHM +
Sbjct: 3 SGSSGDKLYPCQ-CGKSFTHKSQRDRHMSM 31
Score = 30.1 bits (69), Expect = 0.041
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLR 82
+ H S K Y+ + + T++
Sbjct: 74 RFMWRDSFHRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 30.1 bits (69), Expect = 0.049
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 52 SMKSHL----RKHSGEKPYKCLFCDYHCTQSGPLRRHM 85
MK HL + H+G KPY+C C RH+
Sbjct: 48 KMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 36.8 bits (86), Expect = 4e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC--LFCDYHCTQSGPLRRHMKI 87
+K H H+ + PY+C CD + L+RH K+
Sbjct: 117 KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 158
Score = 36.0 bits (84), Expect = 5e-04
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC--LFCDYHCTQSGPLRRHMKIKH 89
T + H H+GEK + C CD T +++H H
Sbjct: 55 TSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 98
Score = 35.6 bits (83), Expect = 9e-04
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC--LFCDYHCTQSGPLRRHMKI 87
+ +++HL KH+GEKP+ C C+ T L RH
Sbjct: 25 NKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT 66
Score = 32.6 bits (75), Expect = 0.012
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 6/36 (16%)
Query: 56 HLRKHSGEKPYKCLFCDYHC----TQSGPLRRHMKI 87
K Y C F D C ++ L+ H+
Sbjct: 3 EKALPVVYKRYICSFAD--CGAAYNKNWKLQAHLCK 36
Score = 30.6 bits (70), Expect = 0.045
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
+ +K H + H+G K C + +H+ H
Sbjct: 147 SLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 28.7 bits (65), Expect = 0.23
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 48 TYSQSMKSHLRKHSGEK--PYKCLF--CDYHCTQSGPLRRHMKI 87
T +MK H + K Y C F C + L+ H
Sbjct: 85 TTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS 128
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.5 bits (80), Expect = 4e-04
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S SGEKP+KC C + H +
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS 34
Score = 27.9 bits (63), Expect = 0.11
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC 68
F C C + SH R HSGEKP
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 35.1 bits (82), Expect = 4e-04
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S S + + YKC C + S L +H +
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT 40
Score = 31.6 bits (73), Expect = 0.008
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 48 TYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
++S + H R H+GEKPYKC C Q L H ++
Sbjct: 29 SHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 24.3 bits (54), Expect = 4.0
Identities = 7/20 (35%), Positives = 9/20 (45%), Gaps = 4/20 (20%)
Query: 52 SMKSHL----RKHSGEKPYK 67
+SHL R H+G P
Sbjct: 57 IQRSHLIGHHRVHTGSGPSS 76
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 4e-04
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPY C C Q L RH +I
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRI 34
Score = 27.5 bits (62), Expect = 0.18
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
KSHL R H+GEKP
Sbjct: 23 IQKSHLNRHRRIHTGEKPSGP 43
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 4e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S GEK YKC C +QS L+ H ++
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV 34
Score = 27.1 bits (61), Expect = 0.21
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 48 TYSQS--MKSHLRKHSGEKPYKC 68
+SQS +++H R H+GEKP
Sbjct: 21 EFSQSSHLQTHQRVHTGEKPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 34.5 bits (80), Expect = 4e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPY C C + L +H ++
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRV 34
Score = 29.1 bits (66), Expect = 0.037
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
++ + H R HSGEKP
Sbjct: 23 RWASCLLKHQRVHSGEKPSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 4e-04
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S SGEKPYKC C TQ+ L H +I
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI 34
Score = 27.5 bits (62), Expect = 0.19
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
T + + +H R H+GEKP
Sbjct: 23 TQNSHLTNHWRIHTGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 4e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S SGEKP++C C TQ+ L H ++
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV 34
Score = 27.1 bits (61), Expect = 0.21
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 48 TYSQS--MKSHLRKHSGEKPYKC 68
++Q+ + SH R H+GEKP
Sbjct: 21 RFTQNSHLHSHQRVHTGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 34.1 bits (79), Expect = 4e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +G+KP++C C G L H +I
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI 34
Score = 27.1 bits (61), Expect = 0.21
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
K +L R H+GEK
Sbjct: 23 RAKGNLVTHQRIHTGEKSGPS 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 5e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPY+C C Q L +H +I
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI 34
Score = 27.1 bits (61), Expect = 0.24
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ K++L R H+GEKP
Sbjct: 23 AQKANLTQHQRIHTGEKPSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 5e-04
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +G+KPYKC C TQ+ L RH I
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGI 34
Score = 26.7 bits (60), Expect = 0.36
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 56 HLRKHSGEKPYKC 68
H H+GEKP
Sbjct: 31 HRGIHTGEKPSGP 43
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 34.1 bits (79), Expect = 5e-04
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S + K Y C C T+ L RH KI
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI 34
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 34.1 bits (78), Expect = 5e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GE P+KC CD TQ L +H +
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERT 34
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 5e-04
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPYKC C TQ+ L RH I
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGI 34
Score = 26.7 bits (60), Expect = 0.38
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ SHL H+GEKP
Sbjct: 23 TQNSHLARHRGIHTGEKPSGP 43
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 33.8 bits (78), Expect = 5e-04
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLM 91
R +G KP++C CD ++S L H K H++
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR-HML 36
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 34.1 bits (79), Expect = 5e-04
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
S +G+KPY+C+ C Q+ L RH + H
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 25.2 bits (56), Expect = 1.1
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 52 SMKSHLRKH-----SGEKPYKC 68
+ L +H +GEKP
Sbjct: 23 IQNTSLIRHWRYYHTGEKPSGP 44
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 34.1 bits (79), Expect = 5e-04
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S S K ++C C T L +H +I
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI 34
Score = 24.8 bits (55), Expect = 2.0
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
++KSHL R H+GEKP
Sbjct: 23 TLKSHLNQHQRIHTGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 6e-04
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPYKC C TQ+ L RH I
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI 34
Score = 26.7 bits (60), Expect = 0.34
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ SHL H+GEKP
Sbjct: 23 TQNSHLVRHRGIHTGEKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 6e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPY C C L+ H +I
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI 34
Score = 27.5 bits (62), Expect = 0.20
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
+ ++ H R H+GEKP
Sbjct: 23 IHDSQLQEHQRIHTGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 6e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPYKC C +Q+ L RH +I
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI 34
Score = 26.7 bits (60), Expect = 0.31
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
S S L R H+GEKP
Sbjct: 23 SQTSKLARHQRIHTGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 6e-04
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S GE+ ++C C Q+ +H +I
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI 34
Score = 24.8 bits (55), Expect = 1.7
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC 68
C C + + H R H+GEKP
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 7e-04
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPYKC C ++ L RH I
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLI 34
Score = 27.1 bits (61), Expect = 0.29
Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
SHL H+GEKP
Sbjct: 23 RRNSHLARHQLIHTGEKPSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 7e-04
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPY+C C TQ L +H K
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT 34
Score = 27.1 bits (61), Expect = 0.21
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ K+HL + H+GEKP
Sbjct: 23 TQKAHLAQHQKTHTGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 8e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GE+P+KC C QS L +H +I
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI 34
Score = 27.1 bits (61), Expect = 0.22
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+HL R H+GEKP
Sbjct: 23 IQSAHLIQHQRIHTGEKPSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 8e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S SG+KPY+C C Q G L +H ++
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRV 34
Score = 26.3 bits (59), Expect = 0.49
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 56 HLRKHSGEKPYKC 68
H R H+GE+
Sbjct: 31 HKRVHTGERSSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 8e-04
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEK Y C C +++ L +H ++
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERL 34
Score = 27.1 bits (61), Expect = 0.21
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 50 SQSMKSHLRKHSGEKPYKC 68
+ + H R HSGEKP
Sbjct: 25 APCLLKHERLHSGEKPSGP 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 8e-04
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GE P+ C C T L H KI
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKI 34
Score = 27.1 bits (61), Expect = 0.25
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC 68
F+C C T+ ++ H + H+GE+P
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 8e-04
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPYKC+ C + +H ++
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL 34
Score = 27.2 bits (61), Expect = 0.23
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
+ S H R H+G++P
Sbjct: 23 GDNSSCTQHQRLHTGQRPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 8e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPYKC C TQ+ L RH ++
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRV 34
Score = 26.7 bits (60), Expect = 0.38
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ SHL R H+G KP
Sbjct: 23 TQNSHLARHRRVHTGGKPSGP 43
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 33.7 bits (78), Expect = 8e-04
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
S S KPY C C ++ L H+K H
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 30.2 bits (69), Expect = 0.019
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRK-HSGEKPYKCLFC 71
++C +C + + H+++ H+ E+P+KC
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 34.4 bits (80), Expect = 8e-04
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 41 YTCPYHT-----TYSQSMKSHLRKHSGEKPYKCLFC 71
++CP + + +K H++ HS + Y C F
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 34.1 bits (79), Expect = 0.001
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 41 YTCPYHT-----TYSQSMKSHLR-KHSGEKPYKCLF--CDYHCTQSGPLRRHMKI 87
C + + Q + H + +H +K + C C L+ HMK+
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Score = 32.5 bits (75), Expect = 0.004
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 60 HSGEKPYKCLF--CDYHCTQSGPLRRHMKIKH 89
SG C F C + L H K +H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 9e-04
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPYKC C L H +I
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI 34
Score = 28.6 bits (65), Expect = 0.057
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
Y S+ H R H+GEKP
Sbjct: 23 RYGSSLTVHQRIHTGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 33.2 bits (77), Expect = 0.001
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPY+C C L H +
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRT 34
Score = 27.8 bits (63), Expect = 0.11
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ KS+L R H+GE
Sbjct: 23 NTKSNLMVHQRTHTGESGPSS 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 0.001
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKP++C C L H +
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRT 34
Score = 27.8 bits (63), Expect = 0.11
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ KS+L R H+GEKP
Sbjct: 23 NTKSNLIVHQRTHTGEKPSGP 43
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 34.0 bits (79), Expect = 0.001
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
H R H+GEKPYKCL C +Q+ L H +I
Sbjct: 33 HQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 31.7 bits (73), Expect = 0.006
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
HSGEKPY C+ C ++S L +H ++
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRV 36
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.001
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPY+C C + L H +I
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI 34
Score = 27.1 bits (61), Expect = 0.25
Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
KS L R H+GE P
Sbjct: 23 IKKSQLHVHQRIHTGENPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.001
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKP+KC C Q L +H ++
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV 34
Score = 27.1 bits (61), Expect = 0.26
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ + HL R H+GEKP
Sbjct: 23 NQRVHLTQHQRVHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.001
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPYKC C + L RH +I
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI 34
Score = 27.1 bits (61), Expect = 0.22
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
++ + H R H+GEKP
Sbjct: 23 RHNSYLSRHQRIHTGEKPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.2 bits (77), Expect = 0.001
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S SGEKPYKC C + L H +I
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI 34
Score = 27.1 bits (61), Expect = 0.24
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 56 HLRKHSGEKPYKC 68
H R H+G +P
Sbjct: 31 HRRIHTGYRPSGP 43
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.001
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPY C C S L +H+++
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV 34
Score = 27.1 bits (61), Expect = 0.24
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
S + HLR H+ E
Sbjct: 23 VLSAHLNQHLRVHTQETLSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.001
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +G KPY+C C +Q+ L RH ++
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRV 34
Score = 26.7 bits (60), Expect = 0.34
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
S S L R H+GEKP
Sbjct: 23 SQTSKLARHQRVHTGEKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.001
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPYKC C L H I
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI 34
Score = 27.1 bits (61), Expect = 0.25
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 56 HLRKHSGEKPYKC 68
H H+GEKP
Sbjct: 31 HQVIHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.001
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S SGEKPY C +C S L RH +I
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI 34
Score = 26.7 bits (60), Expect = 0.35
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ + L R H+GEKP
Sbjct: 23 GLSAELVRHQRIHTGEKPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.001
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +G K ++C C T+ L H KI
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKI 34
Score = 27.1 bits (61), Expect = 0.24
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ KS L + H+GEKP
Sbjct: 23 TRKSTLSMHQKIHTGEKPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 32.9 bits (76), Expect = 0.001
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKP++C C + S L H +I
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRI 34
Score = 27.1 bits (61), Expect = 0.24
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
+ S + +H R H+GEKP
Sbjct: 23 SISSQLATHQRIHTGEKPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.001
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S SGEKPY C C +Q L H +
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRT 34
Score = 28.3 bits (64), Expect = 0.097
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
S KS L R H+GEKP
Sbjct: 23 SQKSILSAHQRTHTGEKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.001
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPY C C + L HM+
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT 34
Score = 28.3 bits (64), Expect = 0.099
Identities = 11/21 (52%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
S KS+L R HSGEKP
Sbjct: 23 SSKSYLIIHMRTHSGEKPSGP 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.002
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +G KPY C C + L H I
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI 34
Score = 27.9 bits (63), Expect = 0.11
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 40 CYTCPYHTTYSQSMKSHLRKHSGEKPYKC 68
C C + S+ +H H+GEKP
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 32.9 bits (76), Expect = 0.002
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPY+C C +Q+ L +H ++
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRV 34
Score = 26.7 bits (60), Expect = 0.32
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 56 HLRKHSGEKPYKC 68
H R H+GEKP
Sbjct: 31 HQRVHTGEKPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.002
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKP+ C+ C + L +H +I
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI 34
Score = 26.7 bits (60), Expect = 0.28
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 50 SQSMKSHLRKHSGEKPYKC 68
+ H R H+GEKP
Sbjct: 25 HIGLNQHRRIHTGEKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.002
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPYKC C S L +H +
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV 34
Score = 27.1 bits (61), Expect = 0.26
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 56 HLRKHSGEKPYKC 68
H HSGE+P
Sbjct: 31 HHSVHSGERPSGP 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 32.6 bits (75), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S SGEK + C C + LR H ++
Sbjct: 2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRV 34
Score = 24.9 bits (55), Expect = 1.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
Y +++ H R H GEK
Sbjct: 23 CYISALRIHQRVHMGEKCSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.002
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPY+C C T+ L H +I
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQI 34
Score = 27.1 bits (61), Expect = 0.25
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ KS L + H+GEKP
Sbjct: 23 TKKSQLHVHQQIHTGEKPSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.002
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPYKC C L H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQAT 34
Score = 27.9 bits (63), Expect = 0.11
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
S+ H HSGEKP
Sbjct: 23 RARSSLAIHQATHSGEKPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.002
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPY+C C + L H +I
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI 34
Score = 27.9 bits (63), Expect = 0.11
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
++ QS+ H R HSG+KP
Sbjct: 23 SHRQSLSVHQRIHSGKKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GE+ Y+C C Q L H +I
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRI 34
Score = 27.1 bits (61), Expect = 0.23
Identities = 9/21 (42%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
KS L R H GEKP
Sbjct: 23 IQKSTLSMHQRIHRGEKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 32.1 bits (74), Expect = 0.003
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEK YKC C +++ L +H KI
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI 34
Score = 27.1 bits (61), Expect = 0.26
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
S S L + H+GEKP
Sbjct: 23 SRNSQLSQHQKIHTGEKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.003
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPY+C C + L H I
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI 34
Score = 27.9 bits (63), Expect = 0.13
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
+ S+ +H H+G+KP
Sbjct: 23 SVRSSLTTHQAIHTGKKPSGP 43
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.37.1.5
Length = 121
Score = 33.8 bits (77), Expect = 0.003
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 62 GEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
G + CLFCD + H K++H
Sbjct: 12 GRQHTPCLFCDRLFASAEETFSHCKLEH 39
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.003
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S SGE+P+KC C + L H+++
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRL 34
Score = 27.1 bits (61), Expect = 0.24
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 56 HLRKHSGEKPYKC 68
HLR HS EK
Sbjct: 31 HLRLHSREKSSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 32.1 bits (74), Expect = 0.003
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +G++PY+C+ C L H +
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRS 34
Score = 27.5 bits (62), Expect = 0.16
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
KS L R H+GEKP
Sbjct: 23 KTKSSLICHRRSHTGEKPSGP 43
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 33.6 bits (76), Expect = 0.003
Identities = 8/40 (20%), Positives = 12/40 (30%)
Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
S K + +G ++C C L HM
Sbjct: 4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETG 43
Score = 32.4 bits (73), Expect = 0.009
Identities = 9/54 (16%), Positives = 17/54 (31%)
Query: 40 CYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMES 93
+ +S+ K +K KC++C + L HM +
Sbjct: 55 NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.004
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKPY+C C + L +H ++
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRV 34
Score = 27.9 bits (63), Expect = 0.13
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
++ S+ H R HSGEKP
Sbjct: 23 SHHASLTQHQRVHSGEKPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 31.7 bits (73), Expect = 0.004
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S SGEKPY+C C L H +
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERT 34
Score = 25.2 bits (56), Expect = 1.2
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
+ + H R H+G
Sbjct: 23 IWKSLLIVHERTHAGVSGPSS 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 31.8 bits (73), Expect = 0.004
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKP KC C L H +
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT 34
Score = 27.5 bits (62), Expect = 0.17
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEKPYKC 68
C C + + H R H +K
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 31.7 bits (73), Expect = 0.004
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +G KPY C C + L H +
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS 34
Score = 28.3 bits (64), Expect = 0.093
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
S+KS L R H+G KP
Sbjct: 23 SLKSQLIVHQRSHTGVKPSGP 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.004
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S SGE+PY C C + + L H+K
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKR 34
Score = 27.1 bits (61), Expect = 0.21
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 56 HLRKHSGEKPYKC 68
HL++H EK
Sbjct: 31 HLKRHFREKSSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.004
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S GEKPY+C C + S L +H
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT 34
Score = 26.7 bits (60), Expect = 0.35
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 48 TYSQSMKSHLRKHSGEKPYKC 68
+ S + H H+ EKP
Sbjct: 23 SGSYRLTQHWITHTREKPSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.006
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GEKP++C C + + L H +I
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRI 34
Score = 27.1 bits (61), Expect = 0.24
Identities = 8/21 (38%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
S S L R H+GE P
Sbjct: 23 SFNSQLIVHQRIHTGENPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.007
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GE+ Y+C C + L H +I
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRI 34
Score = 27.1 bits (61), Expect = 0.24
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ KS L R H+GEKP
Sbjct: 23 ARKSTLIMHQRIHTGEKPSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.9 bits (71), Expect = 0.008
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +G KPY C C L H +
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT 34
Score = 27.4 bits (62), Expect = 0.16
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
KS+L R H+GE
Sbjct: 23 RSKSYLIIHTRTHTGESGPSS 43
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.014
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 25/68 (36%)
Query: 7 KH-SLSVSNGFE-IVLS-HTKS----CTYI-----------SR-------PDHNYRFVCY 41
K +S+ NG + +V+S +S + SR + RF+
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
Query: 42 TCPYHTTY 49
P+H+
Sbjct: 424 ASPFHSHL 431
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 30.2 bits (69), Expect = 0.014
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 58 RKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
SG++ Y+C C Q G L H +I
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERI 32
Score = 22.9 bits (50), Expect = 8.9
Identities = 6/19 (31%), Positives = 7/19 (36%), Gaps = 4/19 (21%)
Query: 52 SMKSHL----RKHSGEKPY 66
K L R H+G P
Sbjct: 21 RQKGSLTLHERIHTGSGPS 39
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.014
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GE PY+C C ++ L H +
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRT 34
Score = 27.9 bits (63), Expect = 0.11
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
S K L R H+GEKP
Sbjct: 23 SRKYQLISHQRTHAGEKPSGP 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.8 bits (68), Expect = 0.020
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 55 SHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
S +GE PY+C C ++ L H K
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKT 34
Score = 25.2 bits (56), Expect = 1.2
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
S K L + HSG+
Sbjct: 23 SRKDQLVSHQKTHSGQSGPSS 43
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 29.2 bits (66), Expect = 0.038
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 60 HSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
SGEKPY C C + + L +H K+
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKM 32
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 30.3 bits (68), Expect = 0.039
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 40 CYTCPYHTTYSQSMKSHLRKHSGEKPYKC 68
C + +H+R H+GEK
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 24.5 bits (53), Expect = 5.6
Identities = 5/38 (13%), Positives = 13/38 (34%)
Query: 60 HSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSH 97
+ CD + L H+ ++H+ ++
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN 57
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 28.7 bits (65), Expect = 0.054
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
S KS+L + H+ EKP
Sbjct: 21 SSKSYLLVHQQTHAEEKPSGP 41
Score = 28.7 bits (65), Expect = 0.058
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 60 HSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
SGEKP+ C C+ + L H +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQT 32
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 29.7 bits (66), Expect = 0.073
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 37 RFVCYTCPYHTTYSQSMKSHLR-KHSG---EKPYKCLFCDYHCTQSGPLRRHMKIKHLME 92
+ C C + T H+ +H Y C+ C++ + L H H E
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGE 77
Query: 93 SS 94
+
Sbjct: 78 EN 79
Score = 27.8 bits (61), Expect = 0.32
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 49 YSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
+ + E Y+C +C + H+ +H
Sbjct: 2 AHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH 42
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.074
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 37/102 (36%)
Query: 20 LSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYK-CL--------- 69
L + + SR DH+ S+++ LR+ KPY+ CL
Sbjct: 205 LLYQIDPNWTSRSDHSSNI-----KLRI---HSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 70 -----FCDYHC-----TQ--------SGPLRRHMKIKHLMES 93
F + C T+ S H+ + H +
Sbjct: 257 KAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 28.2 bits (64), Expect = 0.085
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 58 RKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
SGE PY+C C + L H +
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRT 32
Score = 27.9 bits (63), Expect = 0.13
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 4/21 (19%)
Query: 52 SMKSHL----RKHSGEKPYKC 68
+ K L R H+GE
Sbjct: 21 NRKDQLISHQRTHAGESGPSS 41
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 28.9 bits (64), Expect = 0.088
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 50 SQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRH 84
S S + H G++ KC C + L R
Sbjct: 3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 28.0 bits (62), Expect = 0.12
Identities = 10/35 (28%), Positives = 12/35 (34%)
Query: 37 RFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFC 71
+ C C + H HSGEKPY
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 29.5 bits (65), Expect = 0.12
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
+FVC C + S S+K H+R E C C T + H+ KH
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 24.1 bits (51), Expect = 9.2
Identities = 7/47 (14%), Positives = 13/47 (27%)
Query: 43 CPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
S L + C C + S L++H++
Sbjct: 52 HNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE 98
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 27.8 bits (61), Expect = 0.14
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 60 HSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
SG++P+ C C T RH+K+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 27.5 bits (60), Expect = 0.15
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMKIKHLME 92
K Y+C +C++ S L+ H+K KH E
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 0.15
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEK 64
+ C C Y + ++ HLRKH+GEK
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.2 bits (54), Expect = 1.4
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMK 86
KPYKC C Y L H++
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLR 30
>1w7c_A Lysyl oxidase; AMNE oxidase, copper, oxidoreductase, quinoprotein,
topaquinone enzyme, TPQ; HET: BMA NAG TPQ IMD; 1.23A
{Pichia pastoris} SCOP: b.30.2.1 d.17.2.1 d.17.2.1 PDB:
1rky_A* 1n9e_A*
Length = 747
Score = 27.2 bits (59), Expect = 0.94
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 43 CPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHM 85
CP Y + ++ +C + + L RH
Sbjct: 375 CPSTAGY---FTTDTFEYDEFYNRTLSYCVFENQEDYSLLRHT 414
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 25.6 bits (55), Expect = 1.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 59 KHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHL 90
+ E+P C C QS LRRH++++H
Sbjct: 18 RSQSEQPATCPICYAVIRQSRNLRRHLELRHF 49
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.5 bits (52), Expect = 2.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 61 SGEKPYKCLFCDYHCTQSGPLRRHM 85
S KP+KC C+Y L+ HM
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHM 29
Score = 23.3 bits (49), Expect = 6.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEK 64
F C C Y T ++K+H+ +HS EK
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 25.9 bits (56), Expect = 2.6
Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 6/54 (11%)
Query: 43 CPYHTTYSQSM------KSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHL 90
Y Y + + H GEK + + LR + + L
Sbjct: 180 VWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVL 233
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 23.6 bits (50), Expect = 3.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMKI 87
KPY C+ C G L+RH++I
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRI 25
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 24.1 bits (51), Expect = 3.7
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 60 HSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
SGEKPY C C + + H++
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 23.6 bits (50), Expect = 5.1
Identities = 9/26 (34%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 61 SGEKPYKCLFCDYHCTQSGP-LRRHM 85
S + KC +CD++ ++G L+RH+
Sbjct: 5 SSGRAMKCPYCDFYFMKNGSDLQRHI 30
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 25.2 bits (54), Expect = 5.5
Identities = 6/43 (13%), Positives = 12/43 (27%)
Query: 19 VLSHTKSCTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHS 61
V H + + C+ C + +H+ H
Sbjct: 162 VSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHG 204
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 23.2 bits (49), Expect = 6.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 39 VCYTCPYHTTYSQSMKSHLRKHSGEK 64
C C T + S+ +H+R+H+GEK
Sbjct: 4 QCVMCGKAFTQASSLIAHVRQHTGEK 29
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 22.7 bits (49), Expect = 9.4
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 41 YTCPYHT---TYSQS--MKSHLRKHSGEK 64
+ C Y ++ +++HLR H+GE+
Sbjct: 9 HICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.134 0.447
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,478,795
Number of extensions: 69949
Number of successful extensions: 713
Number of sequences better than 10.0: 1
Number of HSP's gapped: 651
Number of HSP's successfully gapped: 361
Length of query: 103
Length of database: 6,701,793
Length adjustment: 68
Effective length of query: 35
Effective length of database: 4,803,165
Effective search space: 168110775
Effective search space used: 168110775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.5 bits)