RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3949
(103 letters)
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 40.0 bits (94), Expect = 8e-07
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 58 RKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
R HSGEKPY+C C TQSG ++ H+ KH
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH 32
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 37.7 bits (88), Expect = 6e-06
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 58 RKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
R H+GEKPY C CD Q L H K H
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 21.9 bits (47), Expect = 5.6
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEK 64
+ C C Q + H +++
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHDPN 35
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 37.2 bits (87), Expect = 1e-05
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 60 HSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
HSGEKPY C+ C ++S L +H ++
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRV 29
Score = 24.1 bits (53), Expect = 0.82
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGE 63
+ C C + S + H R H+GE
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVHTGE 33
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 37.0 bits (86), Expect = 1e-05
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
R +G KP++C CD ++S L H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 36.7 bits (85), Expect = 1e-05
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 56 HLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
+ + YKC C + S L +H +
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRT 34
Score = 22.8 bits (49), Expect = 3.4
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGE 63
+ C C ++S + H R H+GE
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTHTGE 38
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 34.3 bits (79), Expect = 1e-04
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 60 HSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
SG++P+ C C T RH+K+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 33.0 bits (76), Expect = 5e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 61 SGEKPYKCLFCDYHCTQSGPLRRHMKIKH 89
S KPY C C ++ L H+K H
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVH 29
Score = 31.9 bits (73), Expect = 0.001
Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRK-HSGEKPYKC 68
++C +C + + H+++ H+ E+P+KC
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 31.6 bits (72), Expect = 0.001
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 35 NYRFVCYTCPYHTTYSQSMKSHLRKHSGEKPYKCLF 70
++ C + + +K H++ HS + Y C F
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 29.9 bits (68), Expect = 0.005
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 63 EKPYKCLFCDYHCTQSGPLRRHMKI 87
+KP++C C + ++S L H++
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRT 25
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 121
Score = 31.4 bits (71), Expect = 0.006
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 63 EKPYKCLFCDYHCTQSGPLRRHMKIKH 89
+ CLFCD + H K++H
Sbjct: 13 RQHTPCLFCDRLFASAEETFSHCKLEH 39
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 29.2 bits (66), Expect = 0.010
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMKI 87
K + C C +S L +H+K
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKT 24
Score = 25.8 bits (57), Expect = 0.22
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEK 64
F C CP S + H++ H +K
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTHQNKK 29
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 28.6 bits (63), Expect = 0.022
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMKIKHLME 92
K Y+C +C++ S L+ H+K KH E
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 28.4 bits (64), Expect = 0.024
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMKI 87
+ + C C + L+RH +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS 24
Score = 24.9 bits (55), Expect = 0.41
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGEK 64
FVC C + +K H R H+ EK
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEK 29
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 28.0 bits (62), Expect = 0.042
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 56 HLRKHSGEKPYKCLFCDYH--CTQSGPLRRHMKI 87
K +K ++CLF + +R H++
Sbjct: 9 KYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQT 42
Score = 21.8 bits (46), Expect = 8.6
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEK 64
+ + C +++SH++ H ++
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 27.7 bits (61), Expect = 0.063
Identities = 14/45 (31%), Positives = 17/45 (37%)
Query: 43 CPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKI 87
C T+ H+ H G +PY C C L HMKI
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 52
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 25.0 bits (55), Expect = 0.36
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 63 EKPYKCLF--CDYHCTQSGPLRRHMKI 87
++PY C CD ++ L RH K
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKS 27
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.1 bits (54), Expect = 0.42
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMKI 87
KPYKC CDY S L +H++I
Sbjct: 2 KPYKCKTCDYAAADSSSLNKHLRI 25
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 24.6 bits (54), Expect = 0.61
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 64 KPYKCLF--CDYHCTQSGPLRRHMKI 87
+P+ C + C T+S L+RH +
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT 26
Score = 23.0 bits (50), Expect = 2.3
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 36 YRFVCYTCPYHTTYSQSMKSHLRKHSGEK 64
+ C T S ++ H R H+GEK
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster
[TaxId: 7227]}
Length = 54
Score = 25.1 bits (54), Expect = 0.70
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 59 KHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHL 90
+ E+P C C QS LRRH++++H
Sbjct: 18 RSQSEQPATCPICYAVIRQSRNLRRHLELRHF 49
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 24.2 bits (53), Expect = 0.85
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 64 KPYKC--LFCDYHCTQSGPLRRHMKI 87
KP+KC C ++ L+ H++
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRS 26
>d1w7ca1 b.30.2.1 (A:316-775) Lysyl oxidase PplO, domain 3 {Yeast
(Pichia pastoris) [TaxId: 4922]}
Length = 460
Score = 25.7 bits (56), Expect = 1.1
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 43 CPYHTTYSQSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHM 85
CP Y + ++ +C + + L RH
Sbjct: 100 CPSTAGY---FTTDTFEYDEFYNRTLSYCVFENQEDYSLLRHT 139
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 23.6 bits (51), Expect = 1.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 63 EKPYKCLFCDYHCTQSGPLRRHMKI 87
EKP+ C C +S +RH KI
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKI 25
>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing
protein METT10D {Human (Homo sapiens) [TaxId: 9606]}
Length = 250
Score = 25.5 bits (55), Expect = 1.4
Identities = 8/70 (11%), Positives = 19/70 (27%), Gaps = 3/70 (4%)
Query: 8 HSLSVSNGFEIVLSHTKS---CTYISRPDHNYRFVCYTCPYHTTYSQSMKSHLRKHSGEK 64
++S+ ++V K+ + Y F P+ ++ + R
Sbjct: 106 EQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPP 165
Query: 65 PYKCLFCDYH 74
P
Sbjct: 166 PSSVNTGGIT 175
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 23.3 bits (51), Expect = 1.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMKI 87
KPYKCL C +Q+ L H +I
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRI 24
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.5 bits (50), Expect = 1.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 38 FVCYTCPYHTTYSQSMKSHLRKHSGE 63
F C CPY + S + HLR H+G+
Sbjct: 4 FKCQICPYASRNSSQLTVHLRSHTGD 29
Score = 22.3 bits (47), Expect = 4.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 63 EKPYKCLFCDYHCTQSGPLRRHMK 86
E+P+KC C Y S L H++
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLR 24
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.0 bits (49), Expect = 2.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 64 KPYKCLFCDYHCTQSGPLRRHMKIKH 89
+P+KC +C + Q L +HMK H
Sbjct: 1 RPFKCNYCSFDTKQPSNLSKHMKKFH 26
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 22.7 bits (49), Expect = 3.1
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 64 KPYKC--LFCDYHCTQSGPLRRHMKI 87
+PY C CD ++S L RH++I
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRI 26
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate
uridylyltransferase {Escherichia coli [TaxId: 562]}
Length = 171
Score = 23.5 bits (50), Expect = 5.8
Identities = 6/52 (11%), Positives = 14/52 (26%), Gaps = 12/52 (23%)
Query: 51 QSMKSHLRKHSGEKPYKCLFCDYHCTQSGPLRRHMKIKHLMESSNSHDITFV 102
+ K + + + DY ++R + H + V
Sbjct: 7 RLQKEYFAEQK-----SPMLVDY-------VQRELADGSRTVVETEHWLAVV 46
>d2bjra2 b.169.1.1 (A:185-368) Sperm motility protein MFP2 {Pig
roundworm (Ascaris suum), isoform B [TaxId: 6253]}
Length = 184
Score = 23.3 bits (50), Expect = 8.0
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 53 MKSHLRKHSGEKPYKCLFCDYHCTQSGP 80
G K + + D+H P
Sbjct: 103 KPFPEAAQFGAKEWIPVHVDHHKGNISP 130
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 21.6 bits (46), Expect = 8.7
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 64 KPYKC--LFCDYHCTQSGPLRRHMKI 87
KP++C C + LR H++I
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRI 26
>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 21.5 bits (45), Expect = 9.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 65 PYKCLFCDYHCTQSGPLRRHMKIK 88
PY C +C++ G L +HMK K
Sbjct: 1 PYHCTYCNFSFKTKGNLTKHMKSK 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.134 0.447
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 393,102
Number of extensions: 16552
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 84
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.5 bits)