BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3950
         (338 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HJP|A Chain A, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
 pdb|3HJP|B Chain B, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
 pdb|3HJP|C Chain C, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
 pdb|3HJP|D Chain D, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
          Length = 164

 Score = 28.5 bits (62), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 170 VVAALSAWVFKENGVIRVKSVSHHKVGEENPPVAYTIMDNVVFRLELE 217
           V+A  S +V  +NG++R K VS     E N    Y  + +VV +L LE
Sbjct: 115 VLAKRSVFVIDKNGIVRYKWVSEDPTKEPN----YDEIKDVVTKLSLE 158


>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
           Methicillin Resistant Staphylococcus Aureus
 pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
           Methicillin Resistant Staphylococcus Aureus
 pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
           Methicillin Resistant Staphylococcus Aureus
 pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
           Methicillin Resistant Staphylococcus Aureus
          Length = 392

 Score = 28.1 bits (61), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 12/116 (10%)

Query: 184 VIRVKSVSHHKVGEENPPVAYTIMDNVVFRLELERKSGNTWVPHNANDVQMEFVRIDPFV 243
           V+ V  +S  K G+      Y       F+L+++ K G+   PH AND     +    + 
Sbjct: 160 VLGVHVMSTMKTGKVYYRPGYVQTGRAFFKLKVQGKGGHGSSPHMANDA----IVAGSYF 215

Query: 244 RTTLKSIAQGK---YET-VFKIPDVYGVYQFKVIYNRI----GYTGISNATQVSVR 291
            T L+++   +   +ET V  I    G  QF VI + +       G+++AT+ ++ 
Sbjct: 216 VTALQTVVSRRLSPFETGVVTIGSFDGKGQFNVIKDVVEIEGDVRGLTDATKATIE 271


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,376,280
Number of Sequences: 62578
Number of extensions: 373757
Number of successful extensions: 762
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 762
Number of HSP's gapped (non-prelim): 2
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)