Query psy3950
Match_columns 338
No_of_seqs 121 out of 215
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 21:31:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2754|consensus 100.0 2E-130 4E-135 947.2 31.8 329 2-332 101-432 (443)
2 PF03345 DDOST_48kD: Oligosacc 100.0 2E-126 4E-131 949.8 35.5 327 2-333 76-414 (423)
3 KOG3861|consensus 98.4 3.5E-07 7.6E-12 89.1 6.0 141 2-180 79-241 (438)
4 TIGR03521 GldG gliding-associa 98.0 2.5E-05 5.5E-10 81.7 10.5 189 1-194 260-511 (552)
5 PF01835 A2M_N: MG2 domain; I 93.4 1.3 2.7E-05 35.4 10.2 71 202-275 9-86 (99)
6 PF00630 Filamin: Filamin/ABP2 89.0 1.8 4E-05 34.2 6.9 68 205-276 18-92 (101)
7 PF13115 YtkA: YtkA-like 82.1 7.8 0.00017 30.1 7.2 62 205-272 18-85 (86)
8 PF10634 Iron_transport: Fe2+ 81.2 5.5 0.00012 35.6 6.6 71 206-279 39-121 (151)
9 smart00557 IG_FLMN Filamin-typ 74.8 21 0.00044 28.4 7.8 63 205-276 15-78 (93)
10 PF05753 TRAP_beta: Translocon 65.8 53 0.0012 30.0 9.3 110 204-325 47-167 (181)
11 cd05879 Ig_P0 Immunoglobulin ( 63.6 10 0.00022 31.9 3.9 20 247-266 87-107 (116)
12 PF11869 DUF3389: Protein of u 53.5 17 0.00037 28.9 3.3 28 2-29 39-74 (75)
13 PF06051 DUF928: Domain of Unk 50.3 30 0.00066 31.6 5.0 41 224-273 41-81 (189)
14 cd08374 C2F_Ferlin C2 domain s 48.1 32 0.0007 29.8 4.5 39 237-275 23-63 (133)
15 PF03633 Glyco_hydro_65C: Glyc 40.6 22 0.00047 25.5 2.0 34 260-293 2-35 (54)
16 PF15563 Imm11: Immunity prote 38.6 30 0.00066 32.5 3.0 35 196-234 67-103 (224)
17 PF02922 CBM_48: Carbohydrate- 35.6 92 0.002 23.6 5.0 52 224-276 18-74 (85)
18 cd02858 Esterase_N_term Estera 35.4 71 0.0015 25.0 4.4 45 224-272 13-58 (85)
19 cd02861 E_set_proteins_like E 34.8 42 0.00091 26.0 2.9 28 246-273 29-56 (82)
20 PF11896 DUF3416: Domain of un 32.1 59 0.0013 29.9 3.9 65 203-276 22-90 (187)
21 PF11606 AlcCBM31: Family 31 c 30.2 2E+02 0.0042 23.7 6.0 61 213-274 19-83 (93)
22 PF10611 DUF2469: Protein of u 30.2 41 0.00089 27.9 2.2 44 263-308 23-67 (101)
23 COG1443 Idi Isopentenyldiphosp 29.2 36 0.00077 31.4 1.9 31 14-44 78-109 (185)
24 cd02860 Pullulanase_N_term Pul 29.1 1.6E+02 0.0035 23.4 5.6 50 224-275 15-69 (100)
25 smart00675 DM11 Domains in hyp 25.8 71 0.0015 28.9 3.1 20 207-226 59-78 (164)
26 TIGR01451 B_ant_repeat conserv 23.4 99 0.0022 22.3 3.0 30 201-235 5-34 (53)
27 PF05751 FixH: FixH; InterPro 22.9 1.7E+02 0.0038 24.6 4.9 41 244-285 103-143 (146)
28 COG3470 Tpd Uncharacterized pr 22.6 1.3E+02 0.0028 27.4 4.1 32 207-240 64-102 (179)
29 PHA02909 hypothetical protein; 22.2 14 0.0003 28.1 -1.7 22 307-328 25-47 (72)
30 cd04041 C2A_fungal C2 domain f 21.4 1.7E+02 0.0036 23.6 4.3 30 267-296 70-100 (111)
31 cd04018 C2C_Ferlin C2 domain t 20.8 2.7E+02 0.0058 24.4 5.8 64 239-302 35-113 (151)
32 cd02856 Glycogen_debranching_e 20.7 2.5E+02 0.0055 22.4 5.3 49 224-274 16-66 (103)
No 1
>KOG2754|consensus
Probab=100.00 E-value=1.8e-130 Score=947.18 Aligned_cols=329 Identities=58% Similarity=0.953 Sum_probs=322.2
Q ss_pred CCccEEEEeCCCChHHHHHHHHHcCeeecCCCCeEEeccCCCc-CCCCceeEEEeCCCCCcccceeecCCC-CCCeeEee
Q psy3950 2 GIGNLLIAGSSSSSDLLRELASESGFEMDEEGAAVIDHLNYDV-KDAEKHTLIVADPSNLVDSEVIVGKKP-SSPLLYQG 79 (338)
Q Consensus 2 ~GGNiLva~s~~~~~~ir~l~~E~gi~~~~~~~~viDHfn~d~-~~~~~h~~i~~~~~nli~~~~i~~~~~-~~pvly~G 79 (338)
+||||||++|+++||+||+||+||||+++|+++.||||+|||. ++.|+|++|++ +|++.++.|+|+.. ..|+||||
T Consensus 101 ~gGnvlv~ass~~~d~iRe~~~E~g~~~~e~~~~ViDH~~~d~s~~sgdhtli~~--~nl~~~~~Ivg~~~~~~piLfrg 178 (443)
T KOG2754|consen 101 SGGNVLVAASSAIGDAIREFASECGIEFDEEGAAVIDHHNYDVSSDSGDHTLIVA--DNLLKAPYIVGKSKRAAPILFRG 178 (443)
T ss_pred CCCcEEEEcCCcccHHHHHHHHHhCcccCcccceeeeeeeccccCCCCCeEEEee--cccccCceeeccccccCCeeeec
Confidence 6999999999999999999999999999999999999999999 58999999998 89999999999876 68999999
Q ss_pred eeEEecCCCCeeEeeeecCCceeecCCCCCCccCCcccCcceeEEEEEeecCCCEEEEEeccccccccccccccccccCC
Q psy3950 80 TGLIVDPANPLVLSVLSADSSAYSYNPDKPIKEYPHAVGKNTVLVAALQARNNARVVFSGSLYFFSNEAFNSPVQKAIGG 159 (338)
Q Consensus 80 ~g~~l~~~npl~~pIL~a~~Tsys~~~~~~~~~~~~~~G~q~~Lvaa~QarNnARv~~~GS~~~fsd~~f~~~v~~~~~~ 159 (338)
+||.++|+|||++|||+|++|||||+|+.+...+||++|+|+.||++||+||||||+|+||+|||||+||.+++++++++
T Consensus 179 ig~~l~~~n~lvl~IL~a~~TsYs~np~a~~s~np~a~Gs~~~LV~~lQarNNARvv~sGS~d~fsd~~~~~~~~~~~~~ 258 (443)
T KOG2754|consen 179 IGHVLGPTNPLVLPILRASPTSYSYNPEAKVSCNPWAAGSQTLLVSGLQARNNARVVFSGSSDFFSDEFFSSQVQSASSS 258 (443)
T ss_pred chhhcCCCCcceeeeecCCCcceecCcccccccCccccccceEEEEeeeccCCceEEEeccHHhhhcccccccccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHhhccccccccEEEecceEEeecCCCCCCc-ceEeCCceEEEEEEEEeeCCeeeeccCCceEEEEEE
Q psy3950 160 KKFDKSSNEAVVAALSAWVFKENGVIRVKSVSHHKVGEENPPV-AYTIMDNVVFRLELERKSGNTWVPHNANDVQMEFVR 238 (338)
Q Consensus 160 ~~~~ks~N~~f~~~l~~W~F~e~gvLr~~~~~H~~~ge~~~p~-~Y~I~D~v~ysi~i~e~~~~~WvPf~~dDiQlEf~m 238 (338)
..++++||++||++|++|+|||+||||+.++.|||+||+.+|. +|||||+|+|||+|+||++|+|+||++|||||||+|
T Consensus 259 ~~~~~sgN~~fA~~lskWvF~E~gvLr~~~~~hhkvget~~p~e~Y~IkD~viySI~i~el~~g~w~P~~adDvQlEfv~ 338 (443)
T KOG2754|consen 259 VQYEQSGNQEFATELSKWVFKEKGVLRVGNVVHHKVGETLPPEEAYRIKDDVIYSIGISELSGGEWVPFVADDVQLEFVR 338 (443)
T ss_pred chhhccccHHHHHHHHHhhhcccceEEeeeceecccCCcCCCccceeecccEEEEEEEEEecCCeeeeecccceEEEEEE
Confidence 8899999999999999999999999999999999999998887 899999999999999999999999999999999999
Q ss_pred eCeeeeeeecccCCceEEEEEecCCceeeeEEEEEeeeccccceeeeEEEeecCCCCCccccccccCcchhhhHHHHHHH
Q psy3950 239 IDPFVRTTLKSIAQGKYETVFKIPDVYGVYQFKVIYNRIGYTGISNATQVSVRPLEHTQYERFISSAYPYYASAFSMMFG 318 (338)
Q Consensus 239 LDPy~R~~L~~~~~g~y~~~FklPD~hGVF~F~vdY~R~G~t~l~~~~~vsVRpl~Hdey~RfI~~AyPYy~s~~s~m~g 318 (338)
||||+|++|+|+++|+|++.||+||+||||||+|||||+|||+|++++|++||||+||||||||++|||||+|||+||+|
T Consensus 339 iDPyvR~tL~~~~~g~~~~~FklPDvyGvFqFkvdY~r~GyT~l~~~~qvsvRpl~h~eYeRfIpsAypYyas~fs~m~g 418 (443)
T KOG2754|consen 339 IDPYVRTTLKPSGQGYYSAEFKLPDVYGVFQFKVDYRRLGYTHLYDKTQVSVRPLAHTEYERFIPSAYPYYASCFSMMAG 418 (443)
T ss_pred eCchheeEEecCCCceEEEEEecCCeeceEEEEEecccccceeeeccceEeeeecccccccccccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeeEEEeeccCC
Q psy3950 319 VFVFSIVFLHYKDD 332 (338)
Q Consensus 319 ~~lF~~~fL~~~~~ 332 (338)
||+||++||++|+.
T Consensus 419 ~~~Fs~vfL~~k~~ 432 (443)
T KOG2754|consen 419 FFLFSFVFLYHKDV 432 (443)
T ss_pred HheeeEEEEEecCC
Confidence 99999999999975
No 2
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=100.00 E-value=1.9e-126 Score=949.83 Aligned_cols=327 Identities=54% Similarity=0.894 Sum_probs=314.4
Q ss_pred CCccEEEEeCCC-ChHHHHHHHHHcCeeecCCCCeEEeccCCCc-CCCCceeEEEeCCCCCcccceeecCCCCCCeeEee
Q psy3950 2 GIGNLLIAGSSS-SSDLLRELASESGFEMDEEGAAVIDHLNYDV-KDAEKHTLIVADPSNLVDSEVIVGKKPSSPLLYQG 79 (338)
Q Consensus 2 ~GGNiLva~s~~-~~~~ir~l~~E~gi~~~~~~~~viDHfn~d~-~~~~~h~~i~~~~~nli~~~~i~~~~~~~pvly~G 79 (338)
+|||||++++++ ++++||+||+||||+++|+|++||||||+|. ++.++|+++++++++++.++.+++... .|++|||
T Consensus 76 ~GgNilv~~s~~~~~~~ir~~~~E~gi~~~~~~~~viDHf~~~~~~~~~~h~~i~~~~~~~i~~~~~~~~~~-~pilf~G 154 (423)
T PF03345_consen 76 NGGNILVAGSSDAIPDSIREFANELGIEFDPKGSKVIDHFNYDSSSDSEDHTVIVLSSNNLIKSSVIVGFKT-KPILFRG 154 (423)
T ss_pred CCCcEEEEeCCCcCcHHHHHHHHHCCeEECCCCCEEEcCCCCcccccccCcceEEecCCccccCcccccCCC-CcEEEEe
Confidence 699999999999 9999999999999999999999999999998 478999999988899999999988764 8999999
Q ss_pred eeEEecCCCCeeEeeeecCCceeecCCCCCCcc--CCcccCcceeEEEEEeecCCCEEEEEecccccccccccccccccc
Q psy3950 80 TGLIVDPANPLVLSVLSADSSAYSYNPDKPIKE--YPHAVGKNTVLVAALQARNNARVVFSGSLYFFSNEAFNSPVQKAI 157 (338)
Q Consensus 80 ~g~~l~~~npl~~pIL~a~~Tsys~~~~~~~~~--~~~~~G~q~~Lvaa~QarNnARv~~~GS~~~fsd~~f~~~v~~~~ 157 (338)
+||++++ |||++|||+||+|||||++++++.+ +||++|+|++||||||||||||++|+||+|||||+||+++|+.+
T Consensus 155 ~g~~l~~-n~l~~pIL~a~~Tays~~~~~~~~~~~~~~~~G~q~~LVsa~QarNNARv~~~GS~d~fsd~~f~~~v~~~- 232 (423)
T PF03345_consen 155 VGHLLDN-NPLVFPILRAPSTAYSYDPKEPIEEYDDPWAAGSQISLVSAFQARNNARVVFSGSLDMFSDEFFDSKVQKA- 232 (423)
T ss_pred EEEEecC-CCceeeeeccCCceeccccccccccccchhhccccceEEEEEecccCcEEEEEecHHHhccHHHhhhhhhc-
Confidence 9999996 9999999999999999999988765 49999999999999999999999999999999999999999988
Q ss_pred CCcccccchhHHHHHHhhccccccccEEEecceEEeecCCCC--CCcceEeCCceEEEEEEEEeeCCeeeeccCCceEEE
Q psy3950 158 GGKKFDKSSNEAVVAALSAWVFKENGVIRVKSVSHHKVGEEN--PPVAYTIMDNVVFRLELERKSGNTWVPHNANDVQME 235 (338)
Q Consensus 158 ~~~~~~ks~N~~f~~~l~~W~F~e~gvLr~~~~~H~~~ge~~--~p~~Y~I~D~v~ysi~i~e~~~~~WvPf~~dDiQlE 235 (338)
.+.++++|++||++|++|||||+||||+.+++|||+++++ +|.+|||||+|+|+|+|+||++|+|+||.+||||||
T Consensus 233 --~~~~~~~N~~f~~~l~~WtF~e~gvLr~~~~~H~~~~~~~~~~p~~Y~I~D~v~ysi~i~e~~~~~WvPf~~dDiQlE 310 (423)
T PF03345_consen 233 --GKKSKSGNREFAKELSKWTFQEKGVLRVSNVKHHKVGETEYSNPEMYRIKDDVEYSIEISEWNNGKWVPFKADDIQLE 310 (423)
T ss_pred --ccccchhHHHHHHHHHHhHHhhcCeEeecceEEEeCCCcCcCCCcceEECCcEEEEEEEEEEeCCeEecCCCCcEEEE
Confidence 3567999999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred EEEeCeeeeeeecc----cCCceEEEEEecCCceeeeEEEEEeeeccccceeeeEEEeecCCCCCcccc--ccccCcchh
Q psy3950 236 FVRIDPFVRTTLKS----IAQGKYETVFKIPDVYGVYQFKVIYNRIGYTGISNATQVSVRPLEHTQYER--FISSAYPYY 309 (338)
Q Consensus 236 f~mLDPy~R~~L~~----~~~g~y~~~FklPD~hGVF~F~vdY~R~G~t~l~~~~~vsVRpl~Hdey~R--fI~~AyPYy 309 (338)
|+|||||+|++|+| .++|+|+++||||||||||||+|||||+|||+|++++|||||||+|||||| ||++|||||
T Consensus 311 f~mLDPy~R~~L~~~~~~~~~~~Y~~~FklPD~hGVF~F~vdY~R~G~t~l~~~~~v~VRpl~Hdey~Rs~fI~~A~PYy 390 (423)
T PF03345_consen 311 FVMLDPYVRLTLKPSYSTDDNGTYSTTFKLPDVHGVFTFKVDYKRPGYTFLEEKTQVSVRPLAHDEYPRSWFITNAYPYY 390 (423)
T ss_pred EEEcCcEEEcccccccccCCCCEEEEEEECCCccceEEEEEEEecCceeeEEEEEEEeccCCccccCccccccccccHHH
Confidence 99999999999999 578999999999999999999999999999999999999999999999999 999999999
Q ss_pred hhHHHHHHHhheeeEEEeeccCCC
Q psy3950 310 ASAFSMMFGVFVFSIVFLHYKDDE 333 (338)
Q Consensus 310 ~s~~s~m~g~~lF~~~fL~~~~~~ 333 (338)
+||||||+|||+||++|||+++++
T Consensus 391 as~~s~m~gf~lF~~~fL~~~~~~ 414 (423)
T PF03345_consen 391 ASAFSMMIGFFLFVFVFLYHKPVK 414 (423)
T ss_pred HHHHHHHHHHHhheeeEEEecCcc
Confidence 999999999999999999999863
No 3
>KOG3861|consensus
Probab=98.42 E-value=3.5e-07 Score=89.06 Aligned_cols=141 Identities=17% Similarity=0.249 Sum_probs=98.9
Q ss_pred CCccEEEEeC----CCChHHHHHHHHHcCeeecCCC---CeEEeccCCCcCCCCceeEEEeCCCCCccccee--------
Q psy3950 2 GIGNLLIAGS----SSSSDLLRELASESGFEMDEEG---AAVIDHLNYDVKDAEKHTLIVADPSNLVDSEVI-------- 66 (338)
Q Consensus 2 ~GGNiLva~s----~~~~~~ir~l~~E~gi~~~~~~---~~viDHfn~d~~~~~~h~~i~~~~~nli~~~~i-------- 66 (338)
.||.++|..+ +.-...+..|+.|+||.+..+. .....+|++. +.++. +.+++.++-
T Consensus 79 ~GGsl~vllGEGGE~rf~tnvNf~le~YGI~vN~DtVvR~vy~KyFhPK-------EalV~--~GVvnr~i~raa~K~v~ 149 (438)
T KOG3861|consen 79 VGGSLVVLLGEGGEPRFNTNVNFFLEQYGIYVNGDTVVRPVYYKYFHPK-------EALVG--GGVVNRSIWRAALKLVI 149 (438)
T ss_pred cCCeEEEEecCCCCccccccHHHHHHHhCeEecCCceeehhhhhccChH-------Hhhhc--cceeeHHHHHHHHhhhH
Confidence 4899998854 2455789999999999999653 2223445543 23444 445543321
Q ss_pred --e---cCCCCCCeeE-eeeeEEecCCCCeeEeeeecCCceeecCCCCCCccCCcccCcceeEEEEEeecC-CCEEEEEe
Q psy3950 67 --V---GKKPSSPLLY-QGTGLIVDPANPLVLSVLSADSSAYSYNPDKPIKEYPHAVGKNTVLVAALQARN-NARVVFSG 139 (338)
Q Consensus 67 --~---~~~~~~pvly-~G~g~~l~~~npl~~pIL~a~~Tsys~~~~~~~~~~~~~~G~q~~Lvaa~QarN-nARv~~~G 139 (338)
+ .+.+...+-| -.-|++|+ -+..+--+|+..+++|..+.- |+|-+-..| .+|+.++|
T Consensus 150 ~~v~~~~~~n~qal~F~YPyGaTL~-V~~panvvLstGsv~fP~nRP---------------~~af~~~kN~gGki~vvG 213 (438)
T KOG3861|consen 150 EKVYYDFSDNKQALHFQYPYGATLN-VSEPANVVLSTGSVVFPFNRP---------------LVAFFTNKNKGGKILVVG 213 (438)
T ss_pred HHHHhhcccchheEEEecccCceee-ccccceeEeccCceeccCCCc---------------ceeeeeccCcCceEEEee
Confidence 1 0111233444 47888888 577788899999999999861 455555554 58999999
Q ss_pred ccccccccccccccccccCCcccccchhHHHHHHhhccccc
Q psy3950 140 SLYFFSNEAFNSPVQKAIGGKKFDKSSNEAVVAALSAWVFK 180 (338)
Q Consensus 140 S~~~fsd~~f~~~v~~~~~~~~~~ks~N~~f~~~l~~W~F~ 180 (338)
|..||+|+|.+ |..|.+..+-+.+|.-.
T Consensus 214 S~~mfhD~Yld-------------keeN~kifd~~v~~L~~ 241 (438)
T KOG3861|consen 214 SGYMFHDKYLD-------------KEENDKIFDYLVKLLGG 241 (438)
T ss_pred eeeeechhhcc-------------ccccchHHHHHHHHhcC
Confidence 99999999998 67899999999999654
No 4
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.04 E-value=2.5e-05 Score=81.67 Aligned_cols=189 Identities=12% Similarity=0.079 Sum_probs=103.7
Q ss_pred CCCccEEEEeCCCC------------------hHHHHHHHHHcCeeecCCCCeEEeccCCCc-CCC---Cc--ee----E
Q psy3950 1 MGIGNLLIAGSSSS------------------SDLLRELASESGFEMDEEGAAVIDHLNYDV-KDA---EK--HT----L 52 (338)
Q Consensus 1 ~~GGNiLva~s~~~------------------~~~ir~l~~E~gi~~~~~~~~viDHfn~d~-~~~---~~--h~----~ 52 (338)
|+||++|++.++.. ...+..|+.++||.++++ .|+|--..-. ... |+ +. .
T Consensus 260 ~~GG~ll~~~dp~~~~~~~~~~~~g~~~~~~~~~~L~~Ll~~~Gi~~~~~--~V~D~~~~~~~~~~g~~g~~~~~~~~~~ 337 (552)
T TIGR03521 260 MNGGKALFLVDAVAMEMDSLYNGDGATFALPRDLNLDDLLFKYGIRINPD--LVEDLNSAPIVLATGNQGNNTQYQPLPW 337 (552)
T ss_pred HcCCeEEEEecCcccccccccccCCccccCCCCCCHHHHHHHhCeEeCcC--eEecCcCCceeeecCCcCCcceecccCc
Confidence 68999999987621 147899999999999876 6788322100 000 01 00 0
Q ss_pred EEeCCCCCcccceeecCCCCCCeeEe-eeeEEecCCCCeeEeeeecCCceeecC-C-----CC-CCcc--CCcccCccee
Q psy3950 53 IVADPSNLVDSEVIVGKKPSSPLLYQ-GTGLIVDPANPLVLSVLSADSSAYSYN-P-----DK-PIKE--YPHAVGKNTV 122 (338)
Q Consensus 53 i~~~~~nli~~~~i~~~~~~~pvly~-G~g~~l~~~npl~~pIL~a~~Tsys~~-~-----~~-~~~~--~~~~~G~q~~ 122 (338)
...+..+.-....|..+ ...+++. ..++...+++--..|+|+.+..|..-. | ++ +... .....| ...
T Consensus 338 ~~~p~~~~~~~~piT~~--l~~v~~~~a~~i~~~~~~~~~tpLL~TS~~s~~~~~~~~i~~~~~~~~~dp~~~~~g-~~~ 414 (552)
T TIGR03521 338 PYYPQVYSFNKHPITKN--LDAVKFEFASTIDTLKNGIKKTPLLQTSPYSKIEGTPAQISLSEVTEEPDPESYNLG-NLP 414 (552)
T ss_pred ccccccccCCCCccccC--cccEEEeccceeEecCCCeEEEEeEEeChhhhccCCCccccHHHhhcCCChhHcCCC-CeE
Confidence 00100011122333322 2245552 222333223455789999988775211 0 00 0000 011224 555
Q ss_pred EEEEEee---------------------cCCCEEEEEeccccccccccccccccc-cC-CcccccchhHHHHHHhhcccc
Q psy3950 123 LVAALQA---------------------RNNARVVFSGSLYFFSNEAFNSPVQKA-IG-GKKFDKSSNEAVVAALSAWVF 179 (338)
Q Consensus 123 Lvaa~Qa---------------------rNnARv~~~GS~~~fsd~~f~~~v~~~-~~-~~~~~ks~N~~f~~~l~~W~F 179 (338)
|.+++.. -.++|++++|+.||++|.++...-..+ |- .......+|.+|.-+...|..
T Consensus 415 la~~l~g~~~s~f~~~~~~~~~~~~~~~~~~~rvvvvgd~d~l~d~~~~~~~~~~~g~~~~~~~~~~N~df~lN~vd~L~ 494 (552)
T TIGR03521 415 LAVLLEGSFTSAYKNRILPFEIPFKRDQGKPTKMIVVADGDVIRNQLDNNGKPLELGYDRFTGNLYGNKEFLLNAVNYLL 494 (552)
T ss_pred EEEEEEeccccccCCCCCccccccccccCCCceEEEEechHHhhhhHhhcCCccccccchhccccCccHHHHHHHHHHhc
Confidence 6666653 256899999999999999883110000 00 000123589999999999999
Q ss_pred ccccEE--EecceEEee
Q psy3950 180 KENGVI--RVKSVSHHK 194 (338)
Q Consensus 180 ~e~gvL--r~~~~~H~~ 194 (338)
+..+.| |....++..
T Consensus 495 ~~~~li~IR~k~~~~r~ 511 (552)
T TIGR03521 495 DDTGLINIRSKEITLPP 511 (552)
T ss_pred CCchhhhccccCcccCC
Confidence 998876 444444433
No 5
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=93.37 E-value=1.3 Score=35.39 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=51.3
Q ss_pred cceEeCCceEEEEEEEEeeCCeeeeccCCceEEEEEEeCeee----eeee-cccCCceEEEEEecCCc--eeeeEEEEEe
Q psy3950 202 VAYTIMDNVVFRLELERKSGNTWVPHNANDVQMEFVRIDPFV----RTTL-KSIAQGKYETVFKIPDV--YGVYQFKVIY 274 (338)
Q Consensus 202 ~~Y~I~D~v~ysi~i~e~~~~~WvPf~~dDiQlEf~mLDPy~----R~~L-~~~~~g~y~~~FklPD~--hGVF~F~vdY 274 (338)
..||-+|.|.+.+-+-..+ ++..|. .+..+++...||-- +... .....|.|+.+|+||+. .|.|+.++.+
T Consensus 9 ~iYrPGetV~~~~~~~~~~-~~~~~~--~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 9 PIYRPGETVHFRAIVRDLD-NDFKPP--ANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp SEE-TTSEEEEEEEEEEEC-TTCSCE--SSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCcCCCCEEEEEEEEeccc-cccccc--cCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 4699999999999999888 322333 45777788889933 3333 33568999999999998 5999999999
Q ss_pred e
Q psy3950 275 N 275 (338)
Q Consensus 275 ~ 275 (338)
.
T Consensus 86 ~ 86 (99)
T PF01835_consen 86 D 86 (99)
T ss_dssp T
T ss_pred c
Confidence 5
No 6
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=89.01 E-value=1.8 Score=34.18 Aligned_cols=68 Identities=19% Similarity=0.360 Sum_probs=47.7
Q ss_pred EeCCceEEEEEEEEeeCCeeeeccCCceEEEEEEeCe-------eeeeeecccCCceEEEEEecCCceeeeEEEEEeee
Q psy3950 205 TIMDNVVFRLELERKSGNTWVPHNANDVQMEFVRIDP-------FVRTTLKSIAQGKYETVFKIPDVYGVYQFKVIYNR 276 (338)
Q Consensus 205 ~I~D~v~ysi~i~e~~~~~WvPf~~dDiQlEf~mLDP-------y~R~~L~~~~~g~y~~~FklPD~hGVF~F~vdY~R 276 (338)
+++...+|.|+...- +|....-..+++|+++ .+| -+...+...++|+|.++|+ |.+.|-|+..|.|+.
T Consensus 18 ~~g~~~~F~V~~~d~-~g~~~~~~~~~~~v~i--~~p~~~~~~~~~~~~v~~~~~G~y~v~y~-p~~~G~y~i~V~~~g 92 (101)
T PF00630_consen 18 VVGEPATFTVDTRDA-GGNPVSSGGDEFQVTI--TSPDGKEEPVPVPVEVIDNGDGTYTVSYT-PTEPGKYKISVKING 92 (101)
T ss_dssp ETTSEEEEEEEETTT-TSSBEESTSSEEEEEE--ESSSSESS--EEEEEEEEESSSEEEEEEE-ESSSEEEEEEEEESS
T ss_pred ECCCcEEEEEEEccC-CCCccccCCceeEEEE--eCCCCCccccccceEEEECCCCEEEEEEE-eCccEeEEEEEEECC
Confidence 677778888877632 2444444446777665 555 3445555568899999999 677899999999865
No 7
>PF13115 YtkA: YtkA-like
Probab=82.12 E-value=7.8 Score=30.05 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=42.3
Q ss_pred EeCCceEEEEEEEEeeCCeeeeccCCceEEEEEEeC----e--eeeeeecccCCceEEEEEecCCceeeeEEEE
Q psy3950 205 TIMDNVVFRLELERKSGNTWVPHNANDVQMEFVRID----P--FVRTTLKSIAQGKYETVFKIPDVYGVYQFKV 272 (338)
Q Consensus 205 ~I~D~v~ysi~i~e~~~~~WvPf~~dDiQlEf~mLD----P--y~R~~L~~~~~g~y~~~FklPD~hGVF~F~v 272 (338)
+.+++ + |.+. ..-...|....+||+|+.|-+ + ..-..+...++|.|.++.+++. =|.++.+|
T Consensus 18 ~~g~~-~--i~v~--~~~~g~pv~~a~V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~~~f~m-~G~W~i~v 85 (86)
T PF13115_consen 18 KVGEN-T--ITVT--VDQGGKPVTDADVQFEIWMPDMEGMEPMTSKVELEETGPGVYEAEVTFSM-AGTWQITV 85 (86)
T ss_pred cCCce-E--EEEE--ECCCCCCCCCCEEEEEEEeCCCCCCCCCceeeeeecCCCCeEEEEeecCC-CeeEEEEE
Confidence 45555 3 4444 444556988778999999996 3 2334444457899999977755 78888776
No 8
>PF10634 Iron_transport: Fe2+ transport protein; InterPro: IPR018470 This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.; PDB: 3LZP_B 3LZN_B 3LZR_A 3LZQ_B 3LZO_A 3LZL_B 3PJN_A 3PJL_A 2O6D_A 2O6C_B ....
Probab=81.23 E-value=5.5 Score=35.63 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=38.8
Q ss_pred eCCceEEEEEEEEee-------CCeeeeccCCceEEEEEEeCe--eeeeeecc---cCCceEEEEEecCCceeeeEEEEE
Q psy3950 206 IMDNVVFRLELERKS-------GNTWVPHNANDVQMEFVRIDP--FVRTTLKS---IAQGKYETVFKIPDVYGVYQFKVI 273 (338)
Q Consensus 206 I~D~v~ysi~i~e~~-------~~~WvPf~~dDiQlEf~mLDP--y~R~~L~~---~~~g~y~~~FklPD~hGVF~F~vd 273 (338)
=..+|+-+++|+-.. .|.|+||- .|..|++..|= -..-+|-| +.+-.|-.+.|| +-=|-|+-++.
T Consensus 39 ~~sdiHLEADIhA~~~n~~Gf~~G~wvPyL--~v~y~i~~~~~~~~~~G~~mPM~A~DGpHYG~Nvkl-~g~G~Y~v~~~ 115 (151)
T PF10634_consen 39 SESDIHLEADIHATEGNPNGFGEGDWVPYL--TVSYEITKKGSGKVQEGTFMPMVASDGPHYGDNVKL-DGPGKYKVTFT 115 (151)
T ss_dssp GG-SEEEEEEEEE-TTGCCS--TTSB--S---EEEEEEEETTTTEEEEEEEEEEEETTEEEEEEEE-S-TSSEEEEEEEE
T ss_pred hhCCeEEEEecccccCCCCcccCCcccCCc--EEEEEEEeCCCCeEEEEecceeecCcCccccccccC-CCCccEEEEEE
Confidence 367899999999885 38999995 35556555541 11111211 233477778887 55566766666
Q ss_pred eeeccc
Q psy3950 274 YNRIGY 279 (338)
Q Consensus 274 Y~R~G~ 279 (338)
..-|+-
T Consensus 116 I~pP~~ 121 (151)
T PF10634_consen 116 IGPPSA 121 (151)
T ss_dssp EE-GGG
T ss_pred EcCccc
Confidence 655544
No 9
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=74.80 E-value=21 Score=28.41 Aligned_cols=63 Identities=16% Similarity=0.317 Sum_probs=42.0
Q ss_pred EeCCceEEEEEEEEeeCCeeeeccCCceEEEEEEeCe-eeeeeecccCCceEEEEEecCCceeeeEEEEEeee
Q psy3950 205 TIMDNVVFRLELERKSGNTWVPHNANDVQMEFVRIDP-FVRTTLKSIAQGKYETVFKIPDVYGVYQFKVIYNR 276 (338)
Q Consensus 205 ~I~D~v~ysi~i~e~~~~~WvPf~~dDiQlEf~mLDP-y~R~~L~~~~~g~y~~~FklPD~hGVF~F~vdY~R 276 (338)
+++...+|.|.-..- -.++++++...=|= -+...++..++|+|.++|+ |..-|.|+..|.|+.
T Consensus 15 ~vg~~~~f~v~~~d~--------G~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~-P~~~G~~~i~V~~~g 78 (93)
T smart00557 15 VVGEPAEFTIDTRGA--------GGGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYT-PTEPGDYTVTVKFGG 78 (93)
T ss_pred ecCCCEEEEEEcCCC--------CCCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEE-eCCCEeEEEEEEECC
Confidence 666666666665532 23555555543331 2455555567899999998 888899999998874
No 10
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.83 E-value=53 Score=29.96 Aligned_cols=110 Identities=18% Similarity=0.324 Sum_probs=63.9
Q ss_pred eEeCCceEEEEEEEEeeCCeeee--c--cCCceEEEEEEeCeeeeeeecccCCceEEEEEecCCceeeeEE---EEEeee
Q psy3950 204 YTIMDNVVFRLELERKSGNTWVP--H--NANDVQMEFVRIDPFVRTTLKSIAQGKYETVFKIPDVYGVYQF---KVIYNR 276 (338)
Q Consensus 204 Y~I~D~v~ysi~i~e~~~~~WvP--f--~~dDiQlEf~mLDPy~R~~L~~~~~g~y~~~FklPD~hGVF~F---~vdY~R 276 (338)
|-+.+.--|.|.|.. +.|-| | ........+-+|+|.-..++ .|.. .|-+.|.|.| .|.|+.
T Consensus 47 yN~G~~~A~dV~l~D---~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh------~~vv---~p~~~G~f~~~~a~VtY~~ 114 (181)
T PF05753_consen 47 YNVGSSAAYDVKLTD---DSFPPEDFELVSGSLSASWERIPPGENVSH------SYVV---RPKKSGYFNFTPAVVTYRD 114 (181)
T ss_pred EECCCCeEEEEEEEC---CCCCccccEeccCceEEEEEEECCCCeEEE------EEEE---eeeeeEEEEccCEEEEEEC
Confidence 555666666666653 56643 3 23467777778888765544 2322 2777777776 578854
Q ss_pred c-cccceeeeEEEeecC---CCCCccccccccCcchhhhHHHHHHHhheeeEE
Q psy3950 277 I-GYTGISNATQVSVRP---LEHTQYERFISSAYPYYASAFSMMFGVFVFSIV 325 (338)
Q Consensus 277 ~-G~t~l~~~~~vsVRp---l~Hdey~RfI~~AyPYy~s~~s~m~g~~lF~~~ 325 (338)
. |=.-+.....-+.++ ++-.+|.|-...++-.|....+|++..++|.++
T Consensus 115 ~~~~~~~~~a~Ss~~~~~~I~~~~~~~k~f~~~~~~w~~f~~~~~~~~~~p~l 167 (181)
T PF05753_consen 115 SEGAKELQVAYSSPPGEGDILAERDYDKKFSSHVMDWGAFAIMTLPVLLIPYL 167 (181)
T ss_pred CCCCceeEEEEecCCCcceEEeccccchhhhhhHHHHHhHHHHHHHHHHHHHH
Confidence 3 212222222222222 233467877666788888877777777777665
No 11
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=63.62 E-value=10 Score=31.88 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=16.6
Q ss_pred ecccCCceEEEEEe-cCCcee
Q psy3950 247 LKSIAQGKYETVFK-IPDVYG 266 (338)
Q Consensus 247 L~~~~~g~y~~~Fk-lPD~hG 266 (338)
|++.+.|+|+-.|+ .||++|
T Consensus 87 v~~sD~G~Y~C~v~n~p~~~~ 107 (116)
T cd05879 87 LDYTDNGTFTCDVKNPPDIVG 107 (116)
T ss_pred CCcccCEEEEEEEEcCCCcCC
Confidence 45568899999999 889877
No 12
>PF11869 DUF3389: Protein of unknown function (DUF3389); InterPro: IPR021811 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=53.46 E-value=17 Score=28.89 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=22.6
Q ss_pred CCccEEEEeCC--------CChHHHHHHHHHcCeee
Q psy3950 2 GIGNLLIAGSS--------SSSDLLRELASESGFEM 29 (338)
Q Consensus 2 ~GGNiLva~s~--------~~~~~ir~l~~E~gi~~ 29 (338)
.|.||++|-++ +..+.++.++.|+||++
T Consensus 39 ~~anvi~A~g~~vkWSikLD~eeQL~~ia~~lGi~i 74 (75)
T PF11869_consen 39 GGANVIIANGGEVKWSIKLDNEEQLQAIAEELGIDI 74 (75)
T ss_pred CCCcEEEEeCcceEEEEEcCCHHHHHHHHHHhCccc
Confidence 58899999543 45688999999999975
No 13
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=50.26 E-value=30 Score=31.62 Aligned_cols=41 Identities=27% Similarity=0.477 Sum_probs=31.2
Q ss_pred eeeccCCceEEEEEEeCeeeeeeecccCCceEEEEEecCCceeeeEEEEE
Q psy3950 224 WVPHNANDVQMEFVRIDPFVRTTLKSIAQGKYETVFKIPDVYGVYQFKVI 273 (338)
Q Consensus 224 WvPf~~dDiQlEf~mLDPy~R~~L~~~~~g~y~~~FklPD~hGVF~F~vd 273 (338)
++|+...+.. ||+..|+= ++-.|.++|.+|++-||..+.+-
T Consensus 41 YvP~~~~~~~-eF~L~d~~--------~~~iy~~~~~l~~~~GIv~i~LP 81 (189)
T PF06051_consen 41 YVPYTSAETV-EFVLQDEQ--------GNPIYQTTFPLPQQPGIVSITLP 81 (189)
T ss_pred EecCCCCcce-EEEEecCC--------CCEEeEEEEecCCCCCEEEEECC
Confidence 4677655544 99966542 35589999999999999999887
No 14
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=48.09 E-value=32 Score=29.84 Aligned_cols=39 Identities=15% Similarity=0.341 Sum_probs=28.3
Q ss_pred EEeCeeeeeeeccc--CCceEEEEEecCCceeeeEEEEEee
Q psy3950 237 VRIDPFVRTTLKSI--AQGKYETVFKIPDVYGVYQFKVIYN 275 (338)
Q Consensus 237 ~mLDPy~R~~L~~~--~~g~y~~~FklPD~hGVF~F~vdY~ 275 (338)
.|.|||++..|.+. +.....+..+--|=-|+|..+.-|.
T Consensus 23 ~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~ 63 (133)
T cd08374 23 KMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFP 63 (133)
T ss_pred cccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEe
Confidence 49999999999874 3345555666677778887776665
No 15
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=40.55 E-value=22 Score=25.54 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=24.2
Q ss_pred ecCCceeeeEEEEEeeeccccceeeeEEEeecCC
Q psy3950 260 KIPDVYGVYQFKVIYNRIGYTGISNATQVSVRPL 293 (338)
Q Consensus 260 klPD~hGVF~F~vdY~R~G~t~l~~~~~vsVRpl 293 (338)
.||++..-++|++.||..=+..--..++++|+-.
T Consensus 2 ~LP~~w~~l~F~~~~rg~~l~v~i~~~~v~v~~~ 35 (54)
T PF03633_consen 2 RLPKQWSSLSFRLRYRGHWLEVEITHEKVTVTLL 35 (54)
T ss_dssp ---TT-SEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred cCCCccCEeEEEEEECCEEEEEEEECCEEEEEEc
Confidence 5899999999999999887777667777776543
No 16
>PF15563 Imm11: Immunity protein 11
Probab=38.62 E-value=30 Score=32.48 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=22.8
Q ss_pred CCCCCCc--ceEeCCceEEEEEEEEeeCCeeeeccCCceEE
Q psy3950 196 GEENPPV--AYTIMDNVVFRLELERKSGNTWVPHNANDVQM 234 (338)
Q Consensus 196 ge~~~p~--~Y~I~D~v~ysi~i~e~~~~~WvPf~~dDiQl 234 (338)
|+-++|. +|.|+|++.|+|++++..- -|--||+|+
T Consensus 67 geiEnprt~~~~i~d~~~f~vEFhp~et----~yflnd~~I 103 (224)
T PF15563_consen 67 GEIENPRTWMLPINDDQIFYVEFHPCET----YYFLNDIYI 103 (224)
T ss_pred ccccCCceEEEEcCCCeEEEEEecCCce----EEEecceEe
Confidence 4445554 6899999999999984321 122377765
No 17
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=35.59 E-value=92 Score=23.61 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=33.1
Q ss_pred eeeccCCceEEEEEEeC--eeeeeeec-ccCCceEEEEEecCCce-e-eeEEEEEeee
Q psy3950 224 WVPHNANDVQMEFVRID--PFVRTTLK-SIAQGKYETVFKIPDVY-G-VYQFKVIYNR 276 (338)
Q Consensus 224 WvPf~~dDiQlEf~mLD--Py~R~~L~-~~~~g~y~~~FklPD~h-G-VF~F~vdY~R 276 (338)
|.| .|..|.|-+-.-+ |..+..|+ ...+|.++++..-.=.+ + -|+|+|+-..
T Consensus 18 waP-~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 18 WAP-NAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp E-T-TESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred ECC-CCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 555 3456666555544 45667777 47889999988742222 3 7899998765
No 18
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=35.44 E-value=71 Score=25.01 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=23.6
Q ss_pred eeeccCCceEEEEEEeCeeeeeeecccCCceEEEEEecCCce-eeeEEEE
Q psy3950 224 WVPHNANDVQMEFVRIDPFVRTTLKSIAQGKYETVFKIPDVY-GVYQFKV 272 (338)
Q Consensus 224 WvPf~~dDiQlEf~mLDPy~R~~L~~~~~g~y~~~FklPD~h-GVF~F~v 272 (338)
|-| .++.|.|-.-. +.-....|++.++|.++++. |+-. |-|+|++
T Consensus 13 wAP-~A~~V~L~~~~-~~~~~~~m~~~~~G~W~~~v--~~l~~g~Y~Y~~ 58 (85)
T cd02858 13 FAP-KANEVQVRGSW-GGAGSHPMTKDEAGVWSVTT--GPLAPGIYTYSF 58 (85)
T ss_pred ECC-CCCEEEEEeec-CCCccEeCeECCCeEEEEEE--CCCCCcEEEEEE
Confidence 455 34555553322 12234556666789999876 4433 4344444
No 19
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=34.80 E-value=42 Score=25.96 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=19.2
Q ss_pred eecccCCceEEEEEecCCceeeeEEEEE
Q psy3950 246 TLKSIAQGKYETVFKIPDVYGVYQFKVI 273 (338)
Q Consensus 246 ~L~~~~~g~y~~~FklPD~hGVF~F~vd 273 (338)
.|++.++|.|+++..+|.--=-|+|.||
T Consensus 29 ~m~~~~~G~w~~~~~l~~G~y~Ykf~vd 56 (82)
T cd02861 29 PMEREGDGLWVVTVELRPGRYEYKFVVD 56 (82)
T ss_pred cCEECCCCcEEEEEeCCCCcEEEEEEEC
Confidence 4555567999999988762113788776
No 20
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=32.12 E-value=59 Score=29.90 Aligned_cols=65 Identities=17% Similarity=0.341 Sum_probs=35.8
Q ss_pred ceEeCCceEEEEEEEEeeCCeeeeccCCceEEEEEEeCe----eeeeeecccCCceEEEEEecCCceeeeEEEEEeee
Q psy3950 203 AYTIMDNVVFRLELERKSGNTWVPHNANDVQMEFVRIDP----FVRTTLKSIAQGKYETVFKIPDVYGVYQFKVIYNR 276 (338)
Q Consensus 203 ~Y~I~D~v~ysi~i~e~~~~~WvPf~~dDiQlEf~mLDP----y~R~~L~~~~~g~y~~~FklPD~hGVF~F~vdY~R 276 (338)
.=.++|.|+.+.+|- .+|. |-|--++.--+| ..++.|.+.++-.+++.|. |++=|.|.|.|.=.+
T Consensus 22 KrvvGe~v~V~Adif--~DGH------D~l~A~l~~r~~~~~~w~~vpM~~~gnDrW~a~f~-~~~~G~~~f~VeAW~ 90 (187)
T PF11896_consen 22 KRVVGEPVPVSADIF--RDGH------DALAAELLWRHPGEREWQEVPMTPLGNDRWEASFT-PDRPGRYEFRVEAWV 90 (187)
T ss_dssp EEETT-EEEEEEEE----SSS------S-EEEEEEEE-TTS-B----B-EESTS-EEEEEEE---SSEEEEEEEEEEE
T ss_pred eeecCCeEEEEEEEE--ecCC------CcEEEEEEEECCCCCcceeeccccCCCCEEEEEEE-CCCceeEEEEEEEEe
Confidence 345677787777774 3331 233333332222 3577888888889999999 889999999997554
No 21
>PF11606 AlcCBM31: Family 31 carbohydrate binding protein; InterPro: IPR021016 Beta-1,3-xylan is a homopolymer of b-1,3-linked D-xylose and is a polysaccharide peculiar to marine algae. Beta-1,3-xylanase is a beta-1,3-xylan hydrolyzing enzyme [].; GO: 0033905 xylan endo-1,3-beta-xylosidase activity; PDB: 2COV_F.
Probab=30.17 E-value=2e+02 Score=23.68 Aligned_cols=61 Identities=18% Similarity=0.258 Sum_probs=32.3
Q ss_pred EEEEEEeeCCeeee---cc-CCceEEEEEEeCeeeeeeecccCCceEEEEEecCCceeeeEEEEEe
Q psy3950 213 RLELERKSGNTWVP---HN-ANDVQMEFVRIDPFVRTTLKSIAQGKYETVFKIPDVYGVYQFKVIY 274 (338)
Q Consensus 213 si~i~e~~~~~WvP---f~-~dDiQlEf~mLDPy~R~~L~~~~~g~y~~~FklPD~hGVF~F~vdY 274 (338)
+|++..-++ .|.. |. -||.=|.=.+-.--++.+....=+..|+.+||+-|++|-=+|.++=
T Consensus 19 ~ievfH~d~-gWsAgwnY~CLd~yCl~g~ks~g~f~r~F~a~LGqtY~i~FKVeD~~~~gQ~i~dk 83 (93)
T PF11606_consen 19 EIEVFHKDN-GWSAGWNYLCLDDYCLSGTKSNGAFTRSFSATLGQTYKITFKVEDINGQGQFITDK 83 (93)
T ss_dssp EEEEEEE-------SSEEEEETTEEEE-EEETTEEEEEEE--TT-EEEEEEEEEETTTTEEEEEEE
T ss_pred eEEEEEecC-CccceeeEEEecCeeccccccCCeeeeeechhcCcceeEEEEEeccCCcccEEEee
Confidence 345554444 5654 22 3665555444433333333323356999999999999999988873
No 22
>PF10611 DUF2469: Protein of unknown function (DUF2469); InterPro: IPR019592 This entry represents a group of proteins often found in Actinomycetes species, clustered with signal peptidase and/or RNAse-HII.
Probab=30.17 E-value=41 Score=27.95 Aligned_cols=44 Identities=32% Similarity=0.492 Sum_probs=34.7
Q ss_pred CceeeeEEEEEeeeccccceeeeEEEeecCCCCCcc-ccccccCcch
Q psy3950 263 DVYGVYQFKVIYNRIGYTGISNATQVSVRPLEHTQY-ERFISSAYPY 308 (338)
Q Consensus 263 D~hGVF~F~vdY~R~G~t~l~~~~~vsVRpl~Hdey-~RfI~~AyPY 308 (338)
|+-|.|+|.|.-.|..| |-..-.+.+|.-.++-| +=.++.||.|
T Consensus 23 DVv~lF~yvVETeRRFY--LaN~Vd~~~r~~~g~vyfEv~m~DaWVW 67 (101)
T PF10611_consen 23 DVVGLFSYVVETERRFY--LANQVDVQVRSAGGDVYFEVSMSDAWVW 67 (101)
T ss_pred HHHhheeeEEEeeeeeE--eecceEEEEecCCCcEEEEEEecceEEE
Confidence 77899999999999876 55666677788777764 4459999987
No 23
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=29.21 E-value=36 Score=31.42 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHcCeeecCCC-CeEEeccCCCc
Q psy3950 14 SSDLLRELASESGFEMDEEG-AAVIDHLNYDV 44 (338)
Q Consensus 14 ~~~~ir~l~~E~gi~~~~~~-~~viDHfn~d~ 44 (338)
..-.+|.++.|+||+++..+ ..+.++|.|..
T Consensus 78 ~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA 109 (185)
T COG1443 78 EDAARRRLAYELGIEPDQYDKLEILPRFRYRA 109 (185)
T ss_pred HHHHHHHHHHHhCCCCcccCccccccceEEec
Confidence 34567899999999999644 56889998865
No 24
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=29.12 E-value=1.6e+02 Score=23.37 Aligned_cols=50 Identities=20% Similarity=0.370 Sum_probs=30.4
Q ss_pred eeeccCCceEEEEEE----eCeeeeeeecccCCceEEEEEecCCcee-eeEEEEEee
Q psy3950 224 WVPHNANDVQMEFVR----IDPFVRTTLKSIAQGKYETVFKIPDVYG-VYQFKVIYN 275 (338)
Q Consensus 224 WvPf~~dDiQlEf~m----LDPy~R~~L~~~~~g~y~~~FklPD~hG-VF~F~vdY~ 275 (338)
|.|- ++.++|-+.- ..|..|..|.+..+|.+++...- +.+| -|+|+|+-.
T Consensus 15 wAP~-A~~V~L~l~~~~~~~~~~~~~~m~~~~~gvw~~~v~~-~~~g~~Y~y~i~~~ 69 (100)
T cd02860 15 WAPT-AQSVKLLLYDKDDQDKVLETVQMKRGENGVWSVTLDG-DLEGYYYLYEVKVY 69 (100)
T ss_pred ECCC-CcEEEEEEEcCCCCCCcceeEeeecCCCCEEEEEeCC-ccCCcEEEEEEEEe
Confidence 6664 4556654421 12335667776678899986542 4444 689999754
No 25
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329.
Probab=25.79 E-value=71 Score=28.86 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=19.4
Q ss_pred CCceEEEEEEEEeeCCeeee
Q psy3950 207 MDNVVFRLELERKSGNTWVP 226 (338)
Q Consensus 207 ~D~v~ysi~i~e~~~~~WvP 226 (338)
+|.|+.++.+..|+.|.|+|
T Consensus 59 ~DrI~~~~~~~~~eRG~W~P 78 (164)
T smart00675 59 TDRISARVSVMHFERGTWQP 78 (164)
T ss_pred CCeEEEEEEEEEecCCeeee
Confidence 79999999999999999999
No 26
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=23.40 E-value=99 Score=22.32 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=20.7
Q ss_pred CcceEeCCceEEEEEEEEeeCCeeeeccCCceEEE
Q psy3950 201 PVAYTIMDNVVFRLELERKSGNTWVPHNANDVQME 235 (338)
Q Consensus 201 p~~Y~I~D~v~ysi~i~e~~~~~WvPf~~dDiQlE 235 (338)
+....+.|.|+|+|.++- .|. -.+.+++++
T Consensus 5 ~~~~~~Gd~v~Yti~v~N--~g~---~~a~~v~v~ 34 (53)
T TIGR01451 5 KTVATIGDTITYTITVTN--NGN---VPATNVVVT 34 (53)
T ss_pred ccccCCCCEEEEEEEEEE--CCC---CceEeEEEE
Confidence 445789999999999994 332 224566665
No 27
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=22.95 E-value=1.7e+02 Score=24.62 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=32.4
Q ss_pred eeeecccCCceEEEEEecCCceeeeEEEEEeeeccccceeee
Q psy3950 244 RTTLKSIAQGKYETVFKIPDVYGVYQFKVIYNRIGYTGISNA 285 (338)
Q Consensus 244 R~~L~~~~~g~y~~~FklPD~hGVF~F~vdY~R~G~t~l~~~ 285 (338)
++.|++..+|.|.+..+.| .-|.+..+|+.++.|=.+-.+.
T Consensus 103 ~~~l~~~~~g~y~~~~~~~-~~G~W~l~l~~~~~~~~~~~~~ 143 (146)
T PF05751_consen 103 TLTLTESAPGVYRAPVPLL-KKGRWYLRLDWEPGDKSWRLEQ 143 (146)
T ss_pred eEEeeECCCceEEEEcCCC-CCccEEEEEEEecCCCeEEEEE
Confidence 5556667899999999999 8899999998888776554443
No 28
>COG3470 Tpd Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]
Probab=22.65 E-value=1.3e+02 Score=27.41 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=20.0
Q ss_pred CCceEEEEEEEEee-------CCeeeeccCCceEEEEEEeC
Q psy3950 207 MDNVVFRLELERKS-------GNTWVPHNANDVQMEFVRID 240 (338)
Q Consensus 207 ~D~v~ysi~i~e~~-------~~~WvPf~~dDiQlEf~mLD 240 (338)
.-+|+-+.+|.-+. .|.|+||- -|-.|++..|
T Consensus 64 ~aDiHlEADIha~~~n~nGfg~Gew~pYL--tv~y~l~~~d 102 (179)
T COG3470 64 EADIHLEADIHALKGNKNGFGEGEWVPYL--TVNYELVNTD 102 (179)
T ss_pred hccceeeeehhccccCCCCcCcccccceE--EEEEEEEecC
Confidence 45778888887773 37899984 2334444444
No 29
>PHA02909 hypothetical protein; Provisional
Probab=22.19 E-value=14 Score=28.11 Aligned_cols=22 Identities=36% Similarity=0.865 Sum_probs=17.0
Q ss_pred chhh-hHHHHHHHhheeeEEEee
Q psy3950 307 PYYA-SAFSMMFGVFVFSIVFLH 328 (338)
Q Consensus 307 PYy~-s~~s~m~g~~lF~~~fL~ 328 (338)
.||+ ..|..|+.|++|+++||.
T Consensus 25 vyytentfcimvsfilfviifls 47 (72)
T PHA02909 25 VYYTENTFCIMVSFILFVIIFLS 47 (72)
T ss_pred EEEeccchhHHHHHHHHHHHHHH
Confidence 4554 468889999999998874
No 30
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=21.44 E-value=1.7e+02 Score=23.56 Aligned_cols=30 Identities=7% Similarity=0.082 Sum_probs=17.4
Q ss_pred eeEEEE-EeeeccccceeeeEEEeecCCCCC
Q psy3950 267 VYQFKV-IYNRIGYTGISNATQVSVRPLEHT 296 (338)
Q Consensus 267 VF~F~v-dY~R~G~t~l~~~~~vsVRpl~Hd 296 (338)
.-+|.| |+.+.|-.-+--+..++++.+.++
T Consensus 70 ~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 70 RLSCRLWDSDRFTADDRLGRVEIDLKELIED 100 (111)
T ss_pred EEEEEEEeCCCCCCCCcceEEEEEHHHHhcC
Confidence 455555 555555445555666666666644
No 31
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=20.80 E-value=2.7e+02 Score=24.42 Aligned_cols=64 Identities=13% Similarity=0.393 Sum_probs=40.2
Q ss_pred eCeeeeeeeccc-------C---CceEEEEEe----cCCceeeeEEEE-EeeeccccceeeeEEEeecCCCCCcccccc
Q psy3950 239 IDPFVRTTLKSI-------A---QGKYETVFK----IPDVYGVYQFKV-IYNRIGYTGISNATQVSVRPLEHTQYERFI 302 (338)
Q Consensus 239 LDPy~R~~L~~~-------~---~g~y~~~Fk----lPD~hGVF~F~v-dY~R~G~t~l~~~~~vsVRpl~Hdey~RfI 302 (338)
.|||+++.+... + +..+--+|. .|+.-....|.| |+.+.|=.-+--...+++..+...+-++++
T Consensus 35 ~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~l 113 (151)
T cd04018 35 VDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFL 113 (151)
T ss_pred cCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccC
Confidence 589998887431 1 223333333 355455777776 777766556666778888888777766653
No 32
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=20.69 E-value=2.5e+02 Score=22.43 Aligned_cols=49 Identities=16% Similarity=0.151 Sum_probs=28.8
Q ss_pred eeeccCCceEEEEEE-eCeeeeeeecccCCceEEEEEecCCceee-eEEEEEe
Q psy3950 224 WVPHNANDVQMEFVR-IDPFVRTTLKSIAQGKYETVFKIPDVYGV-YQFKVIY 274 (338)
Q Consensus 224 WvPf~~dDiQlEf~m-LDPy~R~~L~~~~~g~y~~~FklPD~hGV-F~F~vdY 274 (338)
|.|. ++.|.|-+.- -+.-.++.|+...+|.+++... -+.+|. |+|+|+=
T Consensus 16 wAP~-A~~V~L~l~~~~~~~~~~~m~~~~~GvW~~~v~-~~~~g~~Y~y~i~g 66 (103)
T cd02856 16 HSEN-ATRIELCLFDEDGSETRLPLTEEYGGVWHGFLP-GIKAGQRYGFRVHG 66 (103)
T ss_pred ECCC-CCEEEEEEEeCCCCEEEEEcccccCCEEEEEEC-CCCCCCEEEEEECC
Confidence 6775 5666665421 1112356676566789988664 123454 8999875
Done!