RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3950
         (338 letters)



>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 111

 Score = 28.0 bits (62), Expect = 0.67
 Identities = 7/46 (15%), Positives = 20/46 (43%)

Query: 187 VKSVSHHKVGEENPPVAYTIMDNVVFRLELERKSGNTWVPHNANDV 232
           ++ ++  K+ +E        ++NV   L + + +    V   + D+
Sbjct: 46  LEGLTGQKLPKEKGSTRVHALNNVNKALRVLQNNNVDLVNIGSTDI 91


>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 28.8 bits (63), Expect = 0.90
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 279 YTGISNATQVSVRPLEHTQYERFISSAYPYYASAFSMMFGVFVFSIV 325
           Y   SN T V   P E  QY  +++  + +     + MF + +    
Sbjct: 10  YVPFSNKTGVVRSPFEAPQY--YLAEPWQFSM-LAAYMFLLIMLGFP 53


>d2j0td1 b.40.3.1 (D:1-124) TIMP-1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 124

 Score = 26.5 bits (58), Expect = 2.7
 Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 4/47 (8%)

Query: 184 VIRVKSVSHHKVGEENPPVAYTIMDNVVFR----LELERKSGNTWVP 226
           VIR K V   +V +      Y I    +++    L         + P
Sbjct: 18  VIRAKFVGTPEVNQTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTP 64


>d1mk0a_ d.226.1.1 (A:) Homing endonuclease I-TevI {Bacteriophage T4
           [TaxId: 10665]}
          Length = 97

 Score = 25.7 bits (56), Expect = 3.2
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 266 GVYQFKVIYNRIGYTGISNATQVSVRPLEHTQYERFISSAYPYYASAFSMMFGVFVFSIV 325
           G+YQ K   N   Y G +   +   +   H +       +      +F+    VF  SI+
Sbjct: 4   GIYQIKNTLNNKVYVGSAKDFEKRWK--RHFKDLEKGCHSSIKLQRSFNKHGNVFECSIL 61

Query: 326 FLHYKDDE 333
                + +
Sbjct: 62  EEIPYEKD 69


>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase,
           C-terminal domain {Lactobacillus casei [TaxId: 1582]}
          Length = 129

 Score = 26.0 bits (56), Expect = 4.0
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 110 IKEYPHAVGKNTVLVAALQARNNARVVFSGSLYF 143
           + E          L A+L    +  +V +GSLY 
Sbjct: 86  LHEGRLKDSWQEALAASLNDVPDQPIVITGSLYL 119


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,215,449
Number of extensions: 55470
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 8
Length of query: 338
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,226,816
Effective search space: 309157632
Effective search space used: 309157632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)