BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3951
         (132 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
           Methicillin Resistant Staphylococcus Aureus
 pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
           Methicillin Resistant Staphylococcus Aureus
 pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
           Methicillin Resistant Staphylococcus Aureus
 pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
           Methicillin Resistant Staphylococcus Aureus
          Length = 392

 Score = 26.6 bits (57), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 6   FRLELERKSGNTWVPHNANDVQMEFVRIDPFVRTTLKSIAQGK---YET-VFKIPDVYGV 61
           F+L+++ K G+   PH AND     +    +  T L+++   +   +ET V  I    G 
Sbjct: 188 FKLKVQGKGGHGSSPHMANDA----IVAGSYFVTALQTVVSRRLSPFETGVVTIGSFDGK 243

Query: 62  YQFKVIYNRI----GYTGISNATQVSVR 85
            QF VI + +       G+++AT+ ++ 
Sbjct: 244 GQFNVIKDVVEIEGDVRGLTDATKATIE 271


>pdb|3ZYY|X Chain X, Reductive Activator For Corrinoid,Iron-Sulfur Protein
 pdb|3ZYY|Y Chain Y, Reductive Activator For Corrinoid,Iron-Sulfur Protein
          Length = 631

 Score = 25.8 bits (55), Expect = 7.4,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 10/80 (12%)

Query: 14  SGNTWVPHNANDVQMEFVRIDPF---------VRTTLKSIAQGKYETVFKIPDVYGVYQF 64
           +GNT + H   ++   ++R++P+         V  T   I       V+ +P+V   Y  
Sbjct: 296 AGNTTMTHLFLEIDPRYIRLEPYTPAALFIPPVPATEAKIEMNPKGFVYIMPNV-ASYVG 354

Query: 65  KVIYNRIGYTGISNATQVSV 84
             I + + YTG++N+ ++++
Sbjct: 355 GDITSGVLYTGLANSDEITL 374


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,357,743
Number of Sequences: 62578
Number of extensions: 109242
Number of successful extensions: 273
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 2
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)