Query psy3951
Match_columns 132
No_of_seqs 109 out of 183
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 21:32:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03345 DDOST_48kD: Oligosacc 100.0 1.3E-64 2.7E-69 438.0 15.8 127 1-127 282-414 (423)
2 KOG2754|consensus 100.0 2.2E-63 4.8E-68 425.9 14.6 126 1-126 307-432 (443)
3 PF00630 Filamin: Filamin/ABP2 94.6 0.28 6.1E-06 33.2 7.4 63 4-70 23-92 (101)
4 PF01835 A2M_N: MG2 domain; I 94.6 0.92 2E-05 30.9 10.5 67 1-70 14-87 (99)
5 PF13115 YtkA: YtkA-like 91.8 1.4 3.1E-05 29.3 7.2 52 14-66 28-85 (86)
6 PF10634 Iron_transport: Fe2+ 90.7 1 2.3E-05 35.2 6.4 69 2-73 41-121 (151)
7 smart00557 IG_FLMN Filamin-typ 84.5 5.2 0.00011 27.4 6.3 44 24-70 32-78 (93)
8 cd08374 C2F_Ferlin C2 domain s 65.6 16 0.00034 27.5 4.8 39 31-69 23-63 (133)
9 PF03633 Glyco_hydro_65C: Glyc 64.2 6.7 0.00014 24.4 2.2 34 54-87 2-35 (54)
10 PF06051 DUF928: Domain of Unk 63.0 18 0.00039 28.5 5.0 41 18-67 41-81 (189)
11 PF11896 DUF3416: Domain of un 60.5 15 0.00032 29.3 4.1 33 37-70 58-90 (187)
12 PF02922 CBM_48: Carbohydrate- 60.1 35 0.00075 22.2 5.3 52 18-70 18-74 (85)
13 smart00675 DM11 Domains in hyp 60.0 11 0.00025 29.4 3.3 20 1-20 59-78 (164)
14 COG3470 Tpd Uncharacterized pr 55.1 23 0.00049 28.4 4.2 52 3-56 66-129 (179)
15 PF05751 FixH: FixH; InterPro 54.3 41 0.00088 24.3 5.3 40 38-78 103-142 (146)
16 cd02860 Pullulanase_N_term Pul 51.7 63 0.0014 22.0 5.7 51 17-69 14-69 (100)
17 cd05879 Ig_P0 Immunoglobulin ( 51.3 12 0.00026 27.1 2.0 19 42-60 88-107 (116)
18 cd02858 Esterase_N_term Estera 51.1 37 0.0008 22.9 4.3 45 18-66 13-58 (85)
19 PF05753 TRAP_beta: Translocon 38.1 2E+02 0.0043 22.6 8.9 87 24-119 74-167 (181)
20 PF04234 CopC: CopC domain; I 37.8 65 0.0014 22.2 4.0 42 26-67 47-97 (97)
21 cd04018 C2C_Ferlin C2 domain t 37.8 1.1E+02 0.0024 23.0 5.6 65 33-97 35-114 (151)
22 PF15020 CATSPERD: Cation chan 36.7 81 0.0018 30.4 5.5 63 52-120 643-705 (733)
23 PRK13859 type IV secretion sys 36.5 9.6 0.00021 25.2 -0.4 18 11-29 29-46 (55)
24 PF10611 DUF2469: Protein of u 35.9 36 0.00078 25.0 2.5 44 57-102 23-67 (101)
25 PF11606 AlcCBM31: Family 31 c 34.6 1.8E+02 0.0039 21.1 6.6 61 7-68 19-83 (93)
26 PHA02909 hypothetical protein; 32.9 5.6 0.00012 27.1 -2.0 22 101-122 25-47 (72)
27 cd04038 C2_ArfGAP C2 domain pr 32.7 1.3E+02 0.0029 22.3 5.2 58 31-88 20-90 (145)
28 TIGR03000 plancto_dom_1 Planct 30.5 1E+02 0.0022 21.5 4.0 28 58-86 40-67 (75)
29 PF05618 Zn_protease: Putative 29.7 2.4E+02 0.0053 21.1 6.2 14 9-22 36-49 (138)
30 PF10989 DUF2808: Protein of u 27.2 1.7E+02 0.0038 21.7 5.0 28 47-74 103-133 (146)
31 PF08770 SoxZ: Sulphur oxidati 26.9 93 0.002 22.2 3.3 19 34-52 67-85 (100)
32 PF11704 Folliculin: Vesicle c 26.5 1.3E+02 0.0027 23.4 4.3 52 47-114 48-99 (167)
33 cd02861 E_set_proteins_like E 26.1 1.2E+02 0.0026 20.0 3.6 28 40-67 29-56 (82)
34 cd00057 FA58C Substituted upda 23.3 2.6E+02 0.0056 19.3 6.2 37 5-42 77-129 (143)
35 cd08386 C2A_Synaptotagmin-7 C2 22.2 88 0.0019 21.6 2.5 12 32-43 36-47 (125)
36 CHL00031 psbT photosystem II p 21.9 81 0.0018 18.9 1.9 18 103-120 6-23 (33)
37 cd08682 C2_Rab11-FIP_classI C2 20.9 2.6E+02 0.0056 19.4 4.7 57 32-88 19-94 (126)
38 cd02853 MTHase_N_term Maltooli 20.9 1.6E+02 0.0035 19.4 3.5 45 18-67 15-59 (85)
39 cd02175 GH16_lichenase lichena 20.8 3.7E+02 0.008 20.8 5.9 17 47-63 69-85 (212)
40 KOG4434|consensus 20.4 1.3E+02 0.0027 27.5 3.5 61 35-97 430-497 (520)
No 1
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=100.00 E-value=1.3e-64 Score=438.00 Aligned_cols=127 Identities=54% Similarity=0.945 Sum_probs=124.3
Q ss_pred CCcEEEEEEEEEeeCCeeEecccCCeEEEEEEeCeeEeeeeec----cCCceEEEEEecCCceeeeEEEEEeeeccccce
Q psy3951 1 MDNVVFRLELERKSGNTWVPHNANDVQMEFVRIDPFVRTTLKS----IAQGKYETVFKIPDVYGVYQFKVIYNRIGYTGI 76 (132)
Q Consensus 1 ~D~v~ysi~i~e~~~~~WvPf~~dDiQlEf~mLDPy~R~~L~~----~~~g~y~~~FklPD~hGVf~F~v~Y~R~G~t~l 76 (132)
||+|+|||+|+||++|+|+||.+|||||||+|||||+|++|++ .++|+|+++|||||+||||||+|||+|+|||+|
T Consensus 282 ~D~v~ysi~i~e~~~~~WvPf~~dDiQlEf~mLDPy~R~~L~~~~~~~~~~~Y~~~FklPD~hGVF~F~vdY~R~G~t~l 361 (423)
T PF03345_consen 282 KDDVEYSIEISEWNNGKWVPFKADDIQLEFVMLDPYVRLTLKPSYSTDDNGTYSTTFKLPDVHGVFTFKVDYKRPGYTFL 361 (423)
T ss_pred CCcEEEEEEEEEEeCCeEecCCCCcEEEEEEEcCcEEEcccccccccCCCCEEEEEEECCCccceEEEEEEEecCceeeE
Confidence 7999999999999999999999999999999999999999998 578999999999999999999999999999999
Q ss_pred EeeeEEeeeCCCCccccc--ccccccchhhhHHHHHHHhheeeEEEeeccCCC
Q psy3951 77 SNATQVSVRPLEHTQYER--FISSAYPYYASAFSMMFGVFVFSIVFLHYKDDE 127 (132)
Q Consensus 77 ~~~~~v~VRp~~H~ey~R--fi~~AyPYyas~~s~~~g~~~F~~~fL~~~~~~ 127 (132)
++++|||||||+|||||| ||++|||||+||+|||+||++|+++||++++.+
T Consensus 362 ~~~~~v~VRpl~Hdey~Rs~fI~~A~PYyas~~s~m~gf~lF~~~fL~~~~~~ 414 (423)
T PF03345_consen 362 EEKTQVSVRPLAHDEYPRSWFITNAYPYYASAFSMMIGFFLFVFVFLYHKPVK 414 (423)
T ss_pred EEEEEEeccCCccccCccccccccccHHHHHHHHHHHHHHhheeeEEEecCcc
Confidence 999999999999999999 999999999999999999999999999999874
No 2
>KOG2754|consensus
Probab=100.00 E-value=2.2e-63 Score=425.91 Aligned_cols=126 Identities=63% Similarity=1.075 Sum_probs=124.5
Q ss_pred CCcEEEEEEEEEeeCCeeEecccCCeEEEEEEeCeeEeeeeeccCCceEEEEEecCCceeeeEEEEEeeeccccceEeee
Q psy3951 1 MDNVVFRLELERKSGNTWVPHNANDVQMEFVRIDPFVRTTLKSIAQGKYETVFKIPDVYGVYQFKVIYNRIGYTGISNAT 80 (132)
Q Consensus 1 ~D~v~ysi~i~e~~~~~WvPf~~dDiQlEf~mLDPy~R~~L~~~~~g~y~~~FklPD~hGVf~F~v~Y~R~G~t~l~~~~ 80 (132)
||+|+|||+|+||++|+|+||+||||||||+|||||+|++|+++++|.|++.|||||+||||||||||+|+|||+|++++
T Consensus 307 kD~viySI~i~el~~g~w~P~~adDvQlEfv~iDPyvR~tL~~~~~g~~~~~FklPDvyGvFqFkvdY~r~GyT~l~~~~ 386 (443)
T KOG2754|consen 307 KDDVIYSIGISELSGGEWVPFVADDVQLEFVRIDPYVRTTLKPSGQGYYSAEFKLPDVYGVFQFKVDYRRLGYTHLYDKT 386 (443)
T ss_pred cccEEEEEEEEEecCCeeeeecccceEEEEEEeCchheeEEecCCCceEEEEEecCCeeceEEEEEecccccceeeeccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCCCcccccccccccchhhhHHHHHHHhheeeEEEeeccCC
Q psy3951 81 QVSVRPLEHTQYERFISSAYPYYASAFSMMFGVFVFSIVFLHYKDD 126 (132)
Q Consensus 81 ~v~VRp~~H~ey~Rfi~~AyPYyas~~s~~~g~~~F~~~fL~~~~~ 126 (132)
|++|||++||||||||++|||||+||||||+|||+||++||++|+.
T Consensus 387 qvsvRpl~h~eYeRfIpsAypYyas~fs~m~g~~~Fs~vfL~~k~~ 432 (443)
T KOG2754|consen 387 QVSVRPLAHTEYERFIPSAYPYYASCFSMMAGFFLFSFVFLYHKDV 432 (443)
T ss_pred eEeeeecccccccccccccchHHHHHHHHHHHHheeeEEEEEecCC
Confidence 9999999999999999999999999999999999999999999975
No 3
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=94.61 E-value=0.28 Score=33.20 Aligned_cols=63 Identities=21% Similarity=0.389 Sum_probs=42.4
Q ss_pred EEEEEEEEEeeCCeeEecccCCeEEEEEEeCe-------eEeeeeeccCCceEEEEEecCCceeeeEEEEEeee
Q psy3951 4 VVFRLELERKSGNTWVPHNANDVQMEFVRIDP-------FVRTTLKSIAQGKYETVFKIPDVYGVYQFKVIYNR 70 (132)
Q Consensus 4 v~ysi~i~e~~~~~WvPf~~dDiQlEf~mLDP-------y~R~~L~~~~~g~y~~~FklPD~hGVf~F~v~Y~R 70 (132)
.+|.|+... .+|....-..+++|+++ .+| -+...+...++|+|.++|. |.+.|-|+..|.++.
T Consensus 23 ~~F~V~~~d-~~g~~~~~~~~~~~v~i--~~p~~~~~~~~~~~~v~~~~~G~y~v~y~-p~~~G~y~i~V~~~g 92 (101)
T PF00630_consen 23 ATFTVDTRD-AGGNPVSSGGDEFQVTI--TSPDGKEEPVPVPVEVIDNGDGTYTVSYT-PTEPGKYKISVKING 92 (101)
T ss_dssp EEEEEEETT-TTSSBEESTSSEEEEEE--ESSSSESS--EEEEEEEEESSSEEEEEEE-ESSSEEEEEEEEESS
T ss_pred EEEEEEEcc-CCCCccccCCceeEEEE--eCCCCCccccccceEEEECCCCEEEEEEE-eCccEeEEEEEEECC
Confidence 444554442 22444444457777666 445 3445555568899999999 888899999999865
No 4
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=94.60 E-value=0.92 Score=30.91 Aligned_cols=67 Identities=22% Similarity=0.385 Sum_probs=46.3
Q ss_pred CCcEEEEEEEEEeeCCeeEecccCCeEEEEEEeCeeE----eeee-eccCCceEEEEEecCCc--eeeeEEEEEeee
Q psy3951 1 MDNVVFRLELERKSGNTWVPHNANDVQMEFVRIDPFV----RTTL-KSIAQGKYETVFKIPDV--YGVYQFKVIYNR 70 (132)
Q Consensus 1 ~D~v~ysi~i~e~~~~~WvPf~~dDiQlEf~mLDPy~----R~~L-~~~~~g~y~~~FklPD~--hGVf~F~v~Y~R 70 (132)
+|.|.+.+-+...+ ++..|. .+..+++.-.||-- +... .....|.++.+|+||+. -|.|+.++.+..
T Consensus 14 GetV~~~~~~~~~~-~~~~~~--~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~ 87 (99)
T PF01835_consen 14 GETVHFRAIVRDLD-NDFKPP--ANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDD 87 (99)
T ss_dssp TSEEEEEEEEEEEC-TTCSCE--SSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETT
T ss_pred CCEEEEEEEEeccc-cccccc--cCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEcc
Confidence 47888888888877 322333 45777788889832 3333 33567999999999998 599999999963
No 5
>PF13115 YtkA: YtkA-like
Probab=91.77 E-value=1.4 Score=29.33 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=37.2
Q ss_pred eCCeeEecccCCeEEEEEEeC----e--eEeeeeeccCCceEEEEEecCCceeeeEEEE
Q psy3951 14 SGNTWVPHNANDVQMEFVRID----P--FVRTTLKSIAQGKYETVFKIPDVYGVYQFKV 66 (132)
Q Consensus 14 ~~~~WvPf~~dDiQlEf~mLD----P--y~R~~L~~~~~g~y~~~FklPD~hGVf~F~v 66 (132)
..-.-.|-...+||+|+.|-+ . ..-..+...++|.|.++.+++ .=|.++.+|
T Consensus 28 ~~~~g~pv~~a~V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~~~f~-m~G~W~i~v 85 (86)
T PF13115_consen 28 VDQGGKPVTDADVQFEIWMPDMEGMEPMTSKVELEETGPGVYEAEVTFS-MAGTWQITV 85 (86)
T ss_pred ECCCCCCCCCCEEEEEEEeCCCCCCCCCceeeeeecCCCCeEEEEeecC-CCeeEEEEE
Confidence 334456888778999999996 3 233444445789999997764 478888776
No 6
>PF10634 Iron_transport: Fe2+ transport protein; InterPro: IPR018470 This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.; PDB: 3LZP_B 3LZN_B 3LZR_A 3LZQ_B 3LZO_A 3LZL_B 3PJN_A 3PJL_A 2O6D_A 2O6C_B ....
Probab=90.68 E-value=1 Score=35.16 Aligned_cols=69 Identities=16% Similarity=0.268 Sum_probs=39.8
Q ss_pred CcEEEEEEEEEee-------CCeeEecccCCeEEEEEEeCe--eEeeee---eccCCceEEEEEecCCceeeeEEEEEee
Q psy3951 2 DNVVFRLELERKS-------GNTWVPHNANDVQMEFVRIDP--FVRTTL---KSIAQGKYETVFKIPDVYGVYQFKVIYN 69 (132)
Q Consensus 2 D~v~ysi~i~e~~-------~~~WvPf~~dDiQlEf~mLDP--y~R~~L---~~~~~g~y~~~FklPD~hGVf~F~v~Y~ 69 (132)
.+|+.+.+|+-.. .|.|+||-. |..|++..|= -..-+| ..+.+..|-.+.|| +-=|-|+-++...
T Consensus 41 sdiHLEADIhA~~~n~~Gf~~G~wvPyL~--v~y~i~~~~~~~~~~G~~mPM~A~DGpHYG~Nvkl-~g~G~Y~v~~~I~ 117 (151)
T PF10634_consen 41 SDIHLEADIHATEGNPNGFGEGDWVPYLT--VSYEITKKGSGKVQEGTFMPMVASDGPHYGDNVKL-DGPGKYKVTFTIG 117 (151)
T ss_dssp -SEEEEEEEEE-TTGCCS--TTSB--S-E--EEEEEEETTTTEEEEEEEEEEEETTEEEEEEEE-S-TSSEEEEEEEEEE
T ss_pred CCeEEEEecccccCCCCcccCCcccCCcE--EEEEEEeCCCCeEEEEecceeecCcCccccccccC-CCCccEEEEEEEc
Confidence 5789999999885 379999963 6666666641 111112 11344578888888 5567777777666
Q ss_pred eccc
Q psy3951 70 RIGY 73 (132)
Q Consensus 70 R~G~ 73 (132)
-|+-
T Consensus 118 pP~~ 121 (151)
T PF10634_consen 118 PPSA 121 (151)
T ss_dssp -GGG
T ss_pred Cccc
Confidence 6654
No 7
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=84.53 E-value=5.2 Score=27.38 Aligned_cols=44 Identities=23% Similarity=0.466 Sum_probs=32.7
Q ss_pred CCeEEEEEEeCee---EeeeeeccCCceEEEEEecCCceeeeEEEEEeee
Q psy3951 24 NDVQMEFVRIDPF---VRTTLKSIAQGKYETVFKIPDVYGVYQFKVIYNR 70 (132)
Q Consensus 24 dDiQlEf~mLDPy---~R~~L~~~~~g~y~~~FklPD~hGVf~F~v~Y~R 70 (132)
++++++. .+|- +...++..++|+|.++|. |..-|.++..|.++-
T Consensus 32 ~~~~v~i--~~p~g~~~~~~v~d~~dGty~v~y~-P~~~G~~~i~V~~~g 78 (93)
T smart00557 32 GELEVEV--TGPSGKKVPVEVKDNGDGTYTVSYT-PTEPGDYTVTVKFGG 78 (93)
T ss_pred CcEEEEE--ECCCCCeeEeEEEeCCCCEEEEEEE-eCCCEeEEEEEEECC
Confidence 4555555 4554 455556567899999999 999999999998873
No 8
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=65.63 E-value=16 Score=27.49 Aligned_cols=39 Identities=15% Similarity=0.341 Sum_probs=28.3
Q ss_pred EEeCeeEeeeeecc--CCceEEEEEecCCceeeeEEEEEee
Q psy3951 31 VRIDPFVRTTLKSI--AQGKYETVFKIPDVYGVYQFKVIYN 69 (132)
Q Consensus 31 ~mLDPy~R~~L~~~--~~g~y~~~FklPD~hGVf~F~v~Y~ 69 (132)
.|.|||++..|.+. +..+-.+..+-.|--|+|+.+.-|.
T Consensus 23 ~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~ 63 (133)
T cd08374 23 KMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFP 63 (133)
T ss_pred cccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEe
Confidence 39999999999874 3344566667777778887766655
No 9
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=64.16 E-value=6.7 Score=24.44 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=23.7
Q ss_pred ecCCceeeeEEEEEeeeccccceEeeeEEeeeCC
Q psy3951 54 KIPDVYGVYQFKVIYNRIGYTGISNATQVSVRPL 87 (132)
Q Consensus 54 klPD~hGVf~F~v~Y~R~G~t~l~~~~~v~VRp~ 87 (132)
+||++..-++|++.|+..=+..--.++++.|+-.
T Consensus 2 ~LP~~w~~l~F~~~~rg~~l~v~i~~~~v~v~~~ 35 (54)
T PF03633_consen 2 RLPKQWSSLSFRLRYRGHWLEVEITHEKVTVTLL 35 (54)
T ss_dssp ---TT-SEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred cCCCccCEeEEEEEECCEEEEEEEECCEEEEEEc
Confidence 5899999999999999887776666666666543
No 10
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=63.02 E-value=18 Score=28.46 Aligned_cols=41 Identities=27% Similarity=0.483 Sum_probs=30.6
Q ss_pred eEecccCCeEEEEEEeCeeEeeeeeccCCceEEEEEecCCceeeeEEEEE
Q psy3951 18 WVPHNANDVQMEFVRIDPFVRTTLKSIAQGKYETVFKIPDVYGVYQFKVI 67 (132)
Q Consensus 18 WvPf~~dDiQlEf~mLDPy~R~~L~~~~~g~y~~~FklPD~hGVf~F~v~ 67 (132)
++|+...+.. ||+..|+ .++-.|.++|.+|++-|+..+++-
T Consensus 41 YvP~~~~~~~-eF~L~d~--------~~~~iy~~~~~l~~~~GIv~i~LP 81 (189)
T PF06051_consen 41 YVPYTSAETV-EFVLQDE--------QGNPIYQTTFPLPQQPGIVSITLP 81 (189)
T ss_pred EecCCCCcce-EEEEecC--------CCCEEeEEEEecCCCCCEEEEECC
Confidence 4677655444 8885543 245579999999999999999887
No 11
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=60.49 E-value=15 Score=29.25 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=22.8
Q ss_pred EeeeeeccCCceEEEEEecCCceeeeEEEEEeee
Q psy3951 37 VRTTLKSIAQGKYETVFKIPDVYGVYQFKVIYNR 70 (132)
Q Consensus 37 ~R~~L~~~~~g~y~~~FklPD~hGVf~F~v~Y~R 70 (132)
.++.|.+.+|-.++++|. |++=|.|+|.|.=.+
T Consensus 58 ~~vpM~~~gnDrW~a~f~-~~~~G~~~f~VeAW~ 90 (187)
T PF11896_consen 58 QEVPMTPLGNDRWEASFT-PDRPGRYEFRVEAWV 90 (187)
T ss_dssp ---B-EESTS-EEEEEEE---SSEEEEEEEEEEE
T ss_pred eeeccccCCCCEEEEEEE-CCCceeEEEEEEEEe
Confidence 577788888899999999 899999999997544
No 12
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=60.08 E-value=35 Score=22.19 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=32.0
Q ss_pred eEecccCCeEEEEEEeC--eeEeeeee-ccCCceEEEEEecCCce-e-eeEEEEEeee
Q psy3951 18 WVPHNANDVQMEFVRID--PFVRTTLK-SIAQGKYETVFKIPDVY-G-VYQFKVIYNR 70 (132)
Q Consensus 18 WvPf~~dDiQlEf~mLD--Py~R~~L~-~~~~g~y~~~FklPD~h-G-Vf~F~v~Y~R 70 (132)
|.| .|..++|-+---+ +-....|+ ...+|.++++..-.=.+ | -|+|+|+-..
T Consensus 18 waP-~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 18 WAP-NAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp E-T-TESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred ECC-CCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 555 2355555444444 44566676 47889999998832222 3 7899988765
No 13
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329.
Probab=60.00 E-value=11 Score=29.41 Aligned_cols=20 Identities=25% Similarity=0.508 Sum_probs=18.7
Q ss_pred CCcEEEEEEEEEeeCCeeEe
Q psy3951 1 MDNVVFRLELERKSGNTWVP 20 (132)
Q Consensus 1 ~D~v~ysi~i~e~~~~~WvP 20 (132)
+|.|+.++.+..++.|.|+|
T Consensus 59 ~DrI~~~~~~~~~eRG~W~P 78 (164)
T smart00675 59 TDRISARVSVMHFERGTWQP 78 (164)
T ss_pred CCeEEEEEEEEEecCCeeee
Confidence 47899999999999999999
No 14
>COG3470 Tpd Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]
Probab=55.08 E-value=23 Score=28.42 Aligned_cols=52 Identities=21% Similarity=0.398 Sum_probs=29.7
Q ss_pred cEEEEEEEEEeeC-------CeeEecccCCeEEEEEEeCe--eEeeeeec---cCCceEEEEEecC
Q psy3951 3 NVVFRLELERKSG-------NTWVPHNANDVQMEFVRIDP--FVRTTLKS---IAQGKYETVFKIP 56 (132)
Q Consensus 3 ~v~ysi~i~e~~~-------~~WvPf~~dDiQlEf~mLDP--y~R~~L~~---~~~g~y~~~FklP 56 (132)
+++-+.+|.-+.+ |.|+||-+ |-.|++..|- -.+-++-| .++..|-++.|.-
T Consensus 66 DiHlEADIha~~~n~nGfg~Gew~pYLt--v~y~l~~~d~g~~q~gtfmPMvA~DGpHYG~Nik~e 129 (179)
T COG3470 66 DIHLEADIHALKGNKNGFGEGEWVPYLT--VNYELVNTDTGKVQKGTFMPMVADDGPHYGANIKME 129 (179)
T ss_pred cceeeeehhccccCCCCcCcccccceEE--EEEEEEecCCcceeeeeeeeeecCCCCcccceeeec
Confidence 6777888887742 78999963 5556555551 11111111 2345676666653
No 15
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=54.28 E-value=41 Score=24.31 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=32.2
Q ss_pred eeeeeccCCceEEEEEecCCceeeeEEEEEeeeccccceEe
Q psy3951 38 RTTLKSIAQGKYETVFKIPDVYGVYQFKVIYNRIGYTGISN 78 (132)
Q Consensus 38 R~~L~~~~~g~y~~~FklPD~hGVf~F~v~Y~R~G~t~l~~ 78 (132)
++.|++.++|.|.+....| .-|.+..+|+.++.|=.+..+
T Consensus 103 ~~~l~~~~~g~y~~~~~~~-~~G~W~l~l~~~~~~~~~~~~ 142 (146)
T PF05751_consen 103 TLTLTESAPGVYRAPVPLL-KKGRWYLRLDWEPGDKSWRLE 142 (146)
T ss_pred eEEeeECCCceEEEEcCCC-CCccEEEEEEEecCCCeEEEE
Confidence 6667777889999999998 889999999888876555443
No 16
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=51.69 E-value=63 Score=22.01 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=31.3
Q ss_pred eeEecccCCeEEEEEE----eCeeEeeeeeccCCceEEEEEecCCcee-eeEEEEEee
Q psy3951 17 TWVPHNANDVQMEFVR----IDPFVRTTLKSIAQGKYETVFKIPDVYG-VYQFKVIYN 69 (132)
Q Consensus 17 ~WvPf~~dDiQlEf~m----LDPy~R~~L~~~~~g~y~~~FklPD~hG-Vf~F~v~Y~ 69 (132)
-|.|- |..++|-+-. ..|..+..|.+..+|.+++...- +.+| -|+|+|+-.
T Consensus 14 vwAP~-A~~V~L~l~~~~~~~~~~~~~~m~~~~~gvw~~~v~~-~~~g~~Y~y~i~~~ 69 (100)
T cd02860 14 LWAPT-AQSVKLLLYDKDDQDKVLETVQMKRGENGVWSVTLDG-DLEGYYYLYEVKVY 69 (100)
T ss_pred EECCC-CcEEEEEEEcCCCCCCcceeEeeecCCCCEEEEEeCC-ccCCcEEEEEEEEe
Confidence 36664 4556654422 12335667776678999987653 3444 689999754
No 17
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=51.33 E-value=12 Score=27.07 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=15.3
Q ss_pred eccCCceEEEEEe-cCCcee
Q psy3951 42 KSIAQGKYETVFK-IPDVYG 60 (132)
Q Consensus 42 ~~~~~g~y~~~Fk-lPD~hG 60 (132)
+..++|+|+-.++ .||++|
T Consensus 88 ~~sD~G~Y~C~v~n~p~~~~ 107 (116)
T cd05879 88 DYTDNGTFTCDVKNPPDIVG 107 (116)
T ss_pred CcccCEEEEEEEEcCCCcCC
Confidence 3357799999999 788777
No 18
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=51.12 E-value=37 Score=22.90 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=23.5
Q ss_pred eEecccCCeEEEEEEeCeeEeeeeeccCCceEEEEEecCCc-eeeeEEEE
Q psy3951 18 WVPHNANDVQMEFVRIDPFVRTTLKSIAQGKYETVFKIPDV-YGVYQFKV 66 (132)
Q Consensus 18 WvPf~~dDiQlEf~mLDPy~R~~L~~~~~g~y~~~FklPD~-hGVf~F~v 66 (132)
|-| .|+.+.|-.-. +.-....|+..++|.++++. |+- .|-|+|++
T Consensus 13 wAP-~A~~V~L~~~~-~~~~~~~m~~~~~G~W~~~v--~~l~~g~Y~Y~~ 58 (85)
T cd02858 13 FAP-KANEVQVRGSW-GGAGSHPMTKDEAGVWSVTT--GPLAPGIYTYSF 58 (85)
T ss_pred ECC-CCCEEEEEeec-CCCccEeCeECCCeEEEEEE--CCCCCcEEEEEE
Confidence 555 24445543322 12223456666789999887 333 34344444
No 19
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.06 E-value=2e+02 Score=22.63 Aligned_cols=87 Identities=20% Similarity=0.287 Sum_probs=49.3
Q ss_pred CCeEEEEEEeCeeEeeeeeccCCceEEEEEecCCceeeeEE---EEEeeec-cccceEeeeEEeeeC---CCCccccccc
Q psy3951 24 NDVQMEFVRIDPFVRTTLKSIAQGKYETVFKIPDVYGVYQF---KVIYNRI-GYTGISNATQVSVRP---LEHTQYERFI 96 (132)
Q Consensus 24 dDiQlEf~mLDPy~R~~L~~~~~g~y~~~FklPD~hGVf~F---~v~Y~R~-G~t~l~~~~~v~VRp---~~H~ey~Rfi 96 (132)
......+-+|+|.-..++ ....+ |-+.|.|+| .|.|+.. |=+-+.....-+.++ ++-.+|.|-.
T Consensus 74 G~~s~~~~~i~pg~~vsh--------~~vv~-p~~~G~f~~~~a~VtY~~~~~~~~~~~a~Ss~~~~~~I~~~~~~~k~f 144 (181)
T PF05753_consen 74 GSLSASWERIPPGENVSH--------SYVVR-PKKSGYFNFTPAVVTYRDSEGAKELQVAYSSPPGEGDILAERDYDKKF 144 (181)
T ss_pred CceEEEEEEECCCCeEEE--------EEEEe-eeeeEEEEccCEEEEEECCCCCceeEEEEecCCCcceEEeccccchhh
Confidence 345556666666543332 33333 777888876 5788543 212222222222222 2234677776
Q ss_pred ccccchhhhHHHHHHHhheeeEE
Q psy3951 97 SSAYPYYASAFSMMFGVFVFSIV 119 (132)
Q Consensus 97 ~~AyPYyas~~s~~~g~~~F~~~ 119 (132)
..++--|....+|.++.+++.++
T Consensus 145 ~~~~~~w~~f~~~~~~~~~~p~l 167 (181)
T PF05753_consen 145 SSHVMDWGAFAIMTLPVLLIPYL 167 (181)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHH
Confidence 66788888888888888777766
No 20
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=37.85 E-value=65 Score=22.23 Aligned_cols=42 Identities=21% Similarity=0.435 Sum_probs=26.1
Q ss_pred eEEEEEEeCe---eEeeeeec-cCCceEEEEEec--CCc---eeeeEEEEE
Q psy3951 26 VQMEFVRIDP---FVRTTLKS-IAQGKYETVFKI--PDV---YGVYQFKVI 67 (132)
Q Consensus 26 iQlEf~mLDP---y~R~~L~~-~~~g~y~~~Fkl--PD~---hGVf~F~v~ 67 (132)
+.+....+++ -++..|.+ ..+|+|++..++ .|= -|.|.|.|.
T Consensus 47 v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs~DGH~~~G~~~F~V~ 97 (97)
T PF04234_consen 47 VDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVSADGHPVSGSFSFTVK 97 (97)
T ss_dssp SCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEETTSCEEEEEEEEEE-
T ss_pred eecCcceecCCceEEEEECCCCCCCceEEEEEEEEecCCCCcCCEEEEEEC
Confidence 4444455554 56666665 678999998876 554 488888873
No 21
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=37.84 E-value=1.1e+02 Score=23.03 Aligned_cols=65 Identities=12% Similarity=0.380 Sum_probs=41.1
Q ss_pred eCeeEeeeeecc----------CCceEEEEEe----cCCceeeeEEEE-EeeeccccceEeeeEEeeeCCCCcccccccc
Q psy3951 33 IDPFVRTTLKSI----------AQGKYETVFK----IPDVYGVYQFKV-IYNRIGYTGISNATQVSVRPLEHTQYERFIS 97 (132)
Q Consensus 33 LDPy~R~~L~~~----------~~g~y~~~Fk----lPD~hGVf~F~v-~Y~R~G~t~l~~~~~v~VRp~~H~ey~Rfi~ 97 (132)
.|||+++.+... .+..+.-+|. .|+.-....|.| |+++.|=.-+--...+++..+...+-+++++
T Consensus 35 ~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp 114 (151)
T cd04018 35 VDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLP 114 (151)
T ss_pred cCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCC
Confidence 599999998431 1233333333 344445677776 6666655666667788888887777666543
No 22
>PF15020 CATSPERD: Cation channel sperm-associated protein subunit delta
Probab=36.66 E-value=81 Score=30.40 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=42.9
Q ss_pred EEecCCceeeeEEEEEeeeccccceEeeeEEeeeCCCCcccccccccccchhhhHHHHHHHhheeeEEE
Q psy3951 52 VFKIPDVYGVYQFKVIYNRIGYTGISNATQVSVRPLEHTQYERFISSAYPYYASAFSMMFGVFVFSIVF 120 (132)
Q Consensus 52 ~FklPD~hGVf~F~v~Y~R~G~t~l~~~~~v~VRp~~H~ey~Rfi~~AyPYyas~~s~~~g~~~F~~~f 120 (132)
...-|++-|+|-|+|.---|-||+-+.+++.+|. .|-.+||. ..+|..+-.+ ++..++|++..
T Consensus 643 ~ii~~~~~g~YvF~~~ivDP~YSyC~L~t~Fai~--v~G~~P~~--~~~~~~~~l~--~~~~~~~si~~ 705 (733)
T PF15020_consen 643 HIIWPQRNGIYVFRVKIVDPYYSYCNLTTIFAIY--VYGAIPRP--SVYPVATILL--LLMLIFFSILL 705 (733)
T ss_pred eEEcCCCCeEEEEEEEEeCCCCCccceEEEEEEE--EeccCCcc--ccchHHHHHH--HHHHHHHHHHH
Confidence 4455699999999999999999999999999997 33444443 2334333333 44444555443
No 23
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=36.50 E-value=9.6 Score=25.18 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=14.3
Q ss_pred EEeeCCeeEecccCCeEEE
Q psy3951 11 ERKSGNTWVPHNANDVQME 29 (132)
Q Consensus 11 ~e~~~~~WvPf~~dDiQlE 29 (132)
-.++=|+|+|=. .|+|+|
T Consensus 29 FpLNVgrWqptp-sDLq~~ 46 (55)
T PRK13859 29 FPLNVGRWQPTP-SDLQLT 46 (55)
T ss_pred cccccccccCCh-hhcccc
Confidence 346779999976 689987
No 24
>PF10611 DUF2469: Protein of unknown function (DUF2469); InterPro: IPR019592 This entry represents a group of proteins often found in Actinomycetes species, clustered with signal peptidase and/or RNAse-HII.
Probab=35.90 E-value=36 Score=25.01 Aligned_cols=44 Identities=30% Similarity=0.472 Sum_probs=33.4
Q ss_pred CceeeeEEEEEeeeccccceEeeeEEeeeCCCCcc-cccccccccch
Q psy3951 57 DVYGVYQFKVIYNRIGYTGISNATQVSVRPLEHTQ-YERFISSAYPY 102 (132)
Q Consensus 57 D~hGVf~F~v~Y~R~G~t~l~~~~~v~VRp~~H~e-y~Rfi~~AyPY 102 (132)
|+-|.|++.|.-.|..| |-..-.+.+|.-..+- ++=.++.||.|
T Consensus 23 DVv~lF~yvVETeRRFY--LaN~Vd~~~r~~~g~vyfEv~m~DaWVW 67 (101)
T PF10611_consen 23 DVVGLFSYVVETERRFY--LANQVDVQVRSAGGDVYFEVSMSDAWVW 67 (101)
T ss_pred HHHhheeeEEEeeeeeE--eecceEEEEecCCCcEEEEEEecceEEE
Confidence 77899999999998865 5555566777766666 45558999986
No 25
>PF11606 AlcCBM31: Family 31 carbohydrate binding protein; InterPro: IPR021016 Beta-1,3-xylan is a homopolymer of b-1,3-linked D-xylose and is a polysaccharide peculiar to marine algae. Beta-1,3-xylanase is a beta-1,3-xylan hydrolyzing enzyme [].; GO: 0033905 xylan endo-1,3-beta-xylosidase activity; PDB: 2COV_F.
Probab=34.65 E-value=1.8e+02 Score=21.11 Aligned_cols=61 Identities=18% Similarity=0.258 Sum_probs=32.5
Q ss_pred EEEEEEeeCCeeEe---cc-cCCeEEEEEEeCeeEeeeeeccCCceEEEEEecCCceeeeEEEEEe
Q psy3951 7 RLELERKSGNTWVP---HN-ANDVQMEFVRIDPFVRTTLKSIAQGKYETVFKIPDVYGVYQFKVIY 68 (132)
Q Consensus 7 si~i~e~~~~~WvP---f~-~dDiQlEf~mLDPy~R~~L~~~~~g~y~~~FklPD~hGVf~F~v~Y 68 (132)
+|++..-++ .|.. |. -||.=|.=.+-.--.+.+....=+.+|+.+||+-|++|-=||.++=
T Consensus 19 ~ievfH~d~-gWsAgwnY~CLd~yCl~g~ks~g~f~r~F~a~LGqtY~i~FKVeD~~~~gQ~i~dk 83 (93)
T PF11606_consen 19 EIEVFHKDN-GWSAGWNYLCLDDYCLSGTKSNGAFTRSFSATLGQTYKITFKVEDINGQGQFITDK 83 (93)
T ss_dssp EEEEEEE-------SSEEEEETTEEEE-EEETTEEEEEEE--TT-EEEEEEEEEETTTTEEEEEEE
T ss_pred eEEEEEecC-CccceeeEEEecCeeccccccCCeeeeeechhcCcceeEEEEEeccCCcccEEEee
Confidence 355554444 4654 22 2666555544443334444433456899999999999988888763
No 26
>PHA02909 hypothetical protein; Provisional
Probab=32.89 E-value=5.6 Score=27.06 Aligned_cols=22 Identities=36% Similarity=0.865 Sum_probs=16.8
Q ss_pred chhh-hHHHHHHHhheeeEEEee
Q psy3951 101 PYYA-SAFSMMFGVFVFSIVFLH 122 (132)
Q Consensus 101 PYya-s~~s~~~g~~~F~~~fL~ 122 (132)
.||+ ..|..|++|++|+++||.
T Consensus 25 vyytentfcimvsfilfviifls 47 (72)
T PHA02909 25 VYYTENTFCIMVSFILFVIIFLS 47 (72)
T ss_pred EEEeccchhHHHHHHHHHHHHHH
Confidence 4444 468889999999998874
No 27
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=32.65 E-value=1.3e+02 Score=22.32 Aligned_cols=58 Identities=17% Similarity=0.305 Sum_probs=33.7
Q ss_pred EEeCeeEeeeeecc----------CCceE--EEEEecCCceeeeEEEE-EeeeccccceEeeeEEeeeCCC
Q psy3951 31 VRIDPFVRTTLKSI----------AQGKY--ETVFKIPDVYGVYQFKV-IYNRIGYTGISNATQVSVRPLE 88 (132)
Q Consensus 31 ~mLDPy~R~~L~~~----------~~g~y--~~~FklPD~hGVf~F~v-~Y~R~G~t~l~~~~~v~VRp~~ 88 (132)
...|||+++.+... .+..+ +..|.+|+-....+|.| |+++.|-.-+--...+++.|+.
T Consensus 20 ~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~ 90 (145)
T cd04038 20 TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLV 90 (145)
T ss_pred CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhh
Confidence 46799999888431 12333 34566677666777777 4444444444444556666654
No 28
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=30.54 E-value=1e+02 Score=21.47 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=23.7
Q ss_pred ceeeeEEEEEeeeccccceEeeeEEeeeC
Q psy3951 58 VYGVYQFKVIYNRIGYTGISNATQVSVRP 86 (132)
Q Consensus 58 ~hGVf~F~v~Y~R~G~t~l~~~~~v~VRp 86 (132)
+-=.|++++.|.|-| .-+..+..|.||.
T Consensus 40 ~~y~Y~v~a~~~~dG-~~~t~~~~V~vrA 67 (75)
T TIGR03000 40 KEYEYTVTAEYDRDG-RILTRTRTVVVRA 67 (75)
T ss_pred CEEEEEEEEEEecCC-cEEEEEEEEEEcC
Confidence 333499999999999 9999999999985
No 29
>PF05618 Zn_protease: Putative ATP-dependant zinc protease; InterPro: IPR008503 This family consists of several hypothetical proteins from different archaeal and bacterial species.; PDB: 2PMA_B.
Probab=29.73 E-value=2.4e+02 Score=21.15 Aligned_cols=14 Identities=29% Similarity=0.601 Sum_probs=8.9
Q ss_pred EEEEeeCCeeEecc
Q psy3951 9 ELERKSGNTWVPHN 22 (132)
Q Consensus 9 ~i~e~~~~~WvPf~ 22 (132)
+..|-++..|+-|.
T Consensus 36 ~~ferdg~~~VrF~ 49 (138)
T PF05618_consen 36 EEFERDGEKWVRFT 49 (138)
T ss_dssp EEEEETTEEEEEE-
T ss_pred EEeeeCCceEEEEe
Confidence 33344678999993
No 30
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=27.24 E-value=1.7e+02 Score=21.71 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=22.9
Q ss_pred ceEEEEE---ecCCceeeeEEEEEeeecccc
Q psy3951 47 GKYETVF---KIPDVYGVYQFKVIYNRIGYT 74 (132)
Q Consensus 47 g~y~~~F---klPD~hGVf~F~v~Y~R~G~t 74 (132)
.++++.+ +-|+.-|+|+|.+.-.-+|=.
T Consensus 103 ~tv~V~l~~v~NP~~~G~Y~f~v~a~p~G~~ 133 (146)
T PF10989_consen 103 TTVTVVLSPVRNPRSGGTYQFNVTAFPPGDN 133 (146)
T ss_pred CEEEEEEEeeeCCCCCCeEEEEEEEECCCCC
Confidence 4677766 569999999999999888855
No 31
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=26.88 E-value=93 Score=22.17 Aligned_cols=19 Identities=21% Similarity=0.537 Sum_probs=10.9
Q ss_pred CeeEeeeeeccCCceEEEE
Q psy3951 34 DPFVRTTLKSIAQGKYETV 52 (132)
Q Consensus 34 DPy~R~~L~~~~~g~y~~~ 52 (132)
|||.+..+++.+.|+.++.
T Consensus 67 NP~l~F~~~~~~~g~l~v~ 85 (100)
T PF08770_consen 67 NPYLRFSFKGKKSGTLTVT 85 (100)
T ss_dssp S-EEEEEEEESSSEEEEEE
T ss_pred CCcEEEEEecCCCcEEEEE
Confidence 6777777776555544433
No 32
>PF11704 Folliculin: Vesicle coat protein involved in Golgi to plasma membrane transport; InterPro: IPR021713 In yeast cells this family functions in the regulated delivery of Gap1p (a general amino acid permease) to the cell surface, perhaps as a component of a post-Golgi secretory-vesicle coat complex []. Birt-Hogg-Dube (BHD)4 syndrome is an autosomal dominant disorder characterised by hamartomas of skin follicles, lung cysts, spontaneous pneumothorax, and renal cell carcinoma. Folliculin is the protein from the BHD4 gene and is found to have no significant homology to any other human proteins. It is expressed in most tissues. These same symptoms also occur in TSC or tuberous sclerosis complex, suggesting that the same pathway is involved, and it is likely that the target is the down-stream Tor2 - an essential gene. Folliculin appears to bind Tor2, and down-regulation of Tor2 activity leads to up-regulation of nitrogen responsive genes including membrane transporters and amino acid permeases [].
Probab=26.51 E-value=1.3e+02 Score=23.43 Aligned_cols=52 Identities=15% Similarity=0.235 Sum_probs=34.3
Q ss_pred ceEEEEEecCCceeeeEEEEEeeeccccceEeeeEEeeeCCCCcccccccccccchhhhHHHHHHHhh
Q psy3951 47 GKYETVFKIPDVYGVYQFKVIYNRIGYTGISNATQVSVRPLEHTQYERFISSAYPYYASAFSMMFGVF 114 (132)
Q Consensus 47 g~y~~~FklPD~hGVf~F~v~Y~R~G~t~l~~~~~v~VRp~~H~ey~Rfi~~AyPYyas~~s~~~g~~ 114 (132)
-+++-.|+|||-+- .|..-.+.=-.++ ++-.+-+.++||+.++.|..|+..+
T Consensus 48 ~~ls~~F~L~D~~A----------RG~~R~Y~li~l~------~d~~~~L~~~w~~i~~~f~~ii~~i 99 (167)
T PF11704_consen 48 YTLSYIFRLYDPQA----------RGFERRYCLIVLS------DDKMKKLLNNWPFISSHFSKIIEWI 99 (167)
T ss_pred eEEEEEEEecCccc----------cCccccEEEEEEe------CChhHHHHHhhHHHHHHHHHHHHHH
Confidence 46888999999853 2443333322221 1114458999999999999998765
No 33
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=26.11 E-value=1.2e+02 Score=20.02 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=19.2
Q ss_pred eeeccCCceEEEEEecCCceeeeEEEEE
Q psy3951 40 TLKSIAQGKYETVFKIPDVYGVYQFKVI 67 (132)
Q Consensus 40 ~L~~~~~g~y~~~FklPD~hGVf~F~v~ 67 (132)
.|+..++|.|+++..+|.--=-|+|.||
T Consensus 29 ~m~~~~~G~w~~~~~l~~G~y~Ykf~vd 56 (82)
T cd02861 29 PMEREGDGLWVVTVELRPGRYEYKFVVD 56 (82)
T ss_pred cCEECCCCcEEEEEeCCCCcEEEEEEEC
Confidence 4555567999999998762113777776
No 34
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=23.34 E-value=2.6e+02 Score=19.29 Aligned_cols=37 Identities=14% Similarity=0.365 Sum_probs=20.7
Q ss_pred EEEEEEEEeeCCeeEeccc-----------CCeEEEEEEeCe-----eEeeeee
Q psy3951 5 VFRLELERKSGNTWVPHNA-----------NDVQMEFVRIDP-----FVRTTLK 42 (132)
Q Consensus 5 ~ysi~i~e~~~~~WvPf~~-----------dDiQlEf~mLDP-----y~R~~L~ 42 (132)
.|+|+.+. ++..|.++.. +.-......|++ |+|+...
T Consensus 77 ~~~i~~s~-dg~~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~pv~aRyvRl~~~ 129 (143)
T cd00057 77 SYKVQYSL-DGETWTTYKDKGEEKVFTGNSDGSTPVTNDFPPPIVARYIRILPT 129 (143)
T ss_pred EEEEEEEC-CCCCEeEEEcCCcEEEEeCCcCCCeEEEEeCCCCEEEEEEEEEEe
Confidence 45555543 3557988653 113455666776 6666654
No 35
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=22.16 E-value=88 Score=21.58 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=9.6
Q ss_pred EeCeeEeeeeec
Q psy3951 32 RIDPFVRTTLKS 43 (132)
Q Consensus 32 mLDPy~R~~L~~ 43 (132)
..|||+++.+.+
T Consensus 36 ~~dpyv~v~~~~ 47 (125)
T cd08386 36 TSDPFVKIYLLP 47 (125)
T ss_pred CCCceEEEEECC
Confidence 569999998854
No 36
>CHL00031 psbT photosystem II protein T
Probab=21.92 E-value=81 Score=18.90 Aligned_cols=18 Identities=28% Similarity=0.656 Sum_probs=11.3
Q ss_pred hhhHHHHHHHhheeeEEE
Q psy3951 103 YASAFSMMFGVFVFSIVF 120 (132)
Q Consensus 103 yas~~s~~~g~~~F~~~f 120 (132)
|+-++...+|.+.|.+.|
T Consensus 6 Ytfll~~tlgilFFAI~F 23 (33)
T CHL00031 6 YTFLLVSTLGIIFFAIFF 23 (33)
T ss_pred HHHHHHHHHHHHHHhhee
Confidence 445556666777776654
No 37
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=20.93 E-value=2.6e+02 Score=19.41 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=33.7
Q ss_pred EeCeeEeeeeecc----------CCceE--EEEEecCC------ceeeeEEEE-EeeeccccceEeeeEEeeeCCC
Q psy3951 32 RIDPFVRTTLKSI----------AQGKY--ETVFKIPD------VYGVYQFKV-IYNRIGYTGISNATQVSVRPLE 88 (132)
Q Consensus 32 mLDPy~R~~L~~~----------~~g~y--~~~FklPD------~hGVf~F~v-~Y~R~G~t~l~~~~~v~VRp~~ 88 (132)
..|||+++.|... .+..+ +..|.+|+ .....+|.| |+.+.|-.-+--...++++.+.
T Consensus 19 ~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~ 94 (126)
T cd08682 19 TNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLD 94 (126)
T ss_pred CCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhh
Confidence 5689998888531 12232 22677777 356777877 4445554444555566766654
No 38
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=20.89 E-value=1.6e+02 Score=19.41 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=28.9
Q ss_pred eEecccCCeEEEEEEeCeeEeeeeeccCCceEEEEEecCCceeeeEEEEE
Q psy3951 18 WVPHNANDVQMEFVRIDPFVRTTLKSIAQGKYETVFKIPDVYGVYQFKVI 67 (132)
Q Consensus 18 WvPf~~dDiQlEf~mLDPy~R~~L~~~~~g~y~~~FklPD~hGVf~F~v~ 67 (132)
|-|- |..++|-+-. -.+..|....+|.+++... ++...-|+|+|+
T Consensus 15 wAP~-A~~V~l~l~~---~~~~~m~~~~~G~W~~~v~-~~~g~~Y~y~v~ 59 (85)
T cd02853 15 WAPD-AKRVTLRLDD---GEEIPMQRDGDGWFEAEVP-GAAGTRYRYRLD 59 (85)
T ss_pred eCCC-CCEEEEEecC---CCcccCccCCCcEEEEEeC-CCCCCeEEEEEC
Confidence 7776 4566666432 2244565567799988776 345556899987
No 39
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=20.85 E-value=3.7e+02 Score=20.76 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.2
Q ss_pred ceEEEEEecCCceeeeE
Q psy3951 47 GKYETVFKIPDVYGVYQ 63 (132)
Q Consensus 47 g~y~~~FklPD~hGVf~ 63 (132)
|+|++++|+|..-|+..
T Consensus 69 G~~ear~k~~~~~G~~~ 85 (212)
T cd02175 69 GRYEVRMKPAKGSGVVS 85 (212)
T ss_pred eEEEEEEEcCCCCeEEE
Confidence 68999999999878763
No 40
>KOG4434|consensus
Probab=20.41 E-value=1.3e+02 Score=27.53 Aligned_cols=61 Identities=26% Similarity=0.455 Sum_probs=41.1
Q ss_pred eeEeeeeeccCCceEEEEEecCCceeeeEEEEEeeeccccceEeee-------EEeeeCCCCcccccccc
Q psy3951 35 PFVRTTLKSIAQGKYETVFKIPDVYGVYQFKVIYNRIGYTGISNAT-------QVSVRPLEHTQYERFIS 97 (132)
Q Consensus 35 Py~R~~L~~~~~g~y~~~FklPD~hGVf~F~v~Y~R~G~t~l~~~~-------~v~VRp~~H~ey~Rfi~ 97 (132)
||.-.+|+ ....-...|.+|-.-|+|||.|--|--.|--+.... ..+--|-.|+||--.|.
T Consensus 430 PyhV~tL~--d~eei~lkF~AP~~pG~Ytytv~lrSDSYmg~dq~~~lKldV~eAk~vp~~Hpqwd~~~~ 497 (520)
T KOG4434|consen 430 PYHVCTLK--DTEEIELKFPAPGKPGNYTYTVFLRSDSYMGLDQIKPLKLDVHEAKPVPENHPQWDTAIE 497 (520)
T ss_pred hhhhhccc--ccceeEEeccCCCCCCceEEEEEEecccccChhhccceeeeeccCCCCCCCCcccccccc
Confidence 77777775 345678899999999999999988766443322211 11224677888765544
Done!