RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3951
         (132 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 34.4 bits (78), Expect = 0.006
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 41  LKSIAQGKYETVFKIPDVYGVYQFKVIYNRIGYTGISNATQVSVRPLEHT--QYERFISS 98
           LK+I   +  T+F    V+  ++F  +  +I +   +     S+         Y+ +I  
Sbjct: 481 LKNIEHPERMTLF--RMVFLDFRF--LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 99  AYPYY 103
             P Y
Sbjct: 537 NDPKY 541


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 2.5
 Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 16/100 (16%)

Query: 35  PFVRTTLKSIAQGKYETVFKIP-DVYGVY-----QFKVIYNRIGYTGISNATQVSVRPLE 88
           P        ++ G  E V  +P   + +      QF  I         ++    +   L 
Sbjct: 8   PLT------LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL- 60

Query: 89  HTQYERFISS-AYPYYASAFSMMFGVFV--FSIVFLHYKD 125
             ++  ++SS   P     F  +  + +  F   +L   D
Sbjct: 61  VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100


>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
           immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
           2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
          Length = 132

 Score = 25.3 bits (55), Expect = 4.9
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 60  GVYQFKVIYNRIGYTGISNATQVSVRPLEHT 90
           G Y F++    I +    +   V+V  L H 
Sbjct: 101 GRYFFRMEKGNIKWNYKYDQLSVNVTALTHR 131


>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
           protei photoreceptor, signaling protein; HET: MAN NAG
           BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
           PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
           2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
           1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
           ...
          Length = 349

 Score = 25.8 bits (57), Expect = 4.9
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 11/60 (18%)

Query: 73  YTGISNATQVSVRPLEHTQYERFISSAYPYYASAFSMMFGVFVFSI--------VFLHYK 124
           Y   SN T V   P E  QY  +++  + +   A   MF + +           V + +K
Sbjct: 11  YVPFSNKTGVVRSPFEAPQY--YLAEPWQFSMLAA-YMFLLIMLGFPINFLTLYVTVQHK 67


>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus,
           glycoprotein, membran structural genomics, PSI-2,
           protein structure initiative; HET: BOG; 2.10A {Homo
           sapiens}
          Length = 490

 Score = 25.2 bits (55), Expect = 9.7
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 90  TQYERFISSAYPYYASAFSMMFGVFVFSIVFL 121
           +  E      YP +     M+F  F F + FL
Sbjct: 55  SDMENEFYYRYPSFQDVHVMVFVGFGFLMTFL 86


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0729    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,977,744
Number of extensions: 103376
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 9
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.8 bits)