RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3951
         (132 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 25.3 bits (54), Expect = 2.6
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 73  YTGISNATQVSVRPLEHTQYERFISSAYPYYASAFSMMFGVFVFSIV 119
           Y   SN T V   P E  QY  +++  + +     + MF + +    
Sbjct: 10  YVPFSNKTGVVRSPFEAPQY--YLAEPWQFSM-LAAYMFLLIMLGFP 53


>d1mk0a_ d.226.1.1 (A:) Homing endonuclease I-TevI {Bacteriophage T4
           [TaxId: 10665]}
          Length = 97

 Score = 24.2 bits (52), Expect = 3.3
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 60  GVYQFKVIYNRIGYTGISNATQVSVRPLEHTQYERFISSAYPYYASAFSMMFGVFVFSIV 119
           G+YQ K   N   Y G +   +   +   H +       +      +F+    VF  SI+
Sbjct: 4   GIYQIKNTLNNKVYVGSAKDFEKRWK--RHFKDLEKGCHSSIKLQRSFNKHGNVFECSIL 61

Query: 120 FLHYKDDE 127
                + +
Sbjct: 62  EEIPYEKD 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0503    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 486,725
Number of extensions: 20570
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 10
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.8 bits)