BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3952
(252 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8X2R1|L2HDH_CAEBR L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Caenorhabditis
briggsae GN=CBG06643 PE=3 SV=2
Length = 434
Score = 256 bits (654), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 131/257 (50%), Positives = 173/257 (67%), Gaps = 12/257 (4%)
Query: 1 MGEEFCELGGEIRLNQQVESFKEN------PESVTISTKQGDHLESSYALVCAGLQADEM 54
GE+F + GG+I + +E ++N P V+ D E+ + CAGLQ+D +
Sbjct: 179 FGEDFEKRGGKIYTSYPLEKIEDNLKDSNYPIRVSSDPSYAD-FETKNLITCAGLQSDRV 237
Query: 55 ALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 114
A SGCS +P IVPFRGEYLLL P K+HLV+ NIYPVPDP FPFLGVHFTPRM+G +WLG
Sbjct: 238 AALSGCSTDPKIVPFRGEYLLLKPEKRHLVKTNIYPVPDPRFPFLGVHFTPRMNGDIWLG 297
Query: 115 PNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELK 174
PNAVLA+K+EGY + S +L +L Y G +L K+ +G KE+ + + +V +L+
Sbjct: 298 PNAVLAYKREGYSYFSISPSDLLESLSYSGMQKLVKKHFTFGIKELYRGIWIAAQVKQLQ 357
Query: 175 QYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-----AGRTLHCRNAPSPAATSS 229
++I E++ D+ RGPSGVRAQA+ S+G+LVDDFVF S + +H RNAPSPAATSS
Sbjct: 358 RFIPELKYSDVTRGPSGVRAQAMDSAGNLVDDFVFDSGTGKLSSLIMHVRNAPSPAATSS 417
Query: 230 LAIAKHILNELRREFKL 246
LAIAK I +E FKL
Sbjct: 418 LAIAKMITSEAITRFKL 434
>sp|A7SMW7|L2HDH_NEMVE L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Nematostella
vectensis GN=v1g172254 PE=3 SV=1
Length = 456
Score = 255 bits (652), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 131/263 (49%), Positives = 166/263 (63%), Gaps = 18/263 (6%)
Query: 2 GEEFCELGGEIRLNQQVESFKENPES-------------VTISTKQGDHLESSYALVCAG 48
G++F + GG+I +V FK ES VT+ + ++ Y + C G
Sbjct: 194 GDDFRKGGGDIFTGYEVTDFKCASESGKSQEKEAGLTHPVTVFSNNKQTIKCRYVITCGG 253
Query: 49 LQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMD 108
L +D +A KSGC+ EP IVPFRG+YL+L P K HLV+GNIYPVPDPNFPFLGVHFTPRMD
Sbjct: 254 LYSDRLAEKSGCNREPRIVPFRGDYLVLKPEKCHLVKGNIYPVPDPNFPFLGVHFTPRMD 313
Query: 109 GSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSM 168
GSVWLGPNAVLAF +EGY D ++R+L L + G +L KY +G E +
Sbjct: 314 GSVWLGPNAVLAFAREGYNLLDINLRDLADALAFRGLRQLMFKYFSFGVGEYYRGLNHAA 373
Query: 169 RVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-----AGRTLHCRNAPS 223
+V +L++YI + A D+ GPSGVRAQAL G+LVDDFVF R LH RNAPS
Sbjct: 374 QVKQLQKYIPSVTADDVVSGPSGVRAQALDRDGNLVDDFVFDGGVGEIGSRVLHVRNAPS 433
Query: 224 PAATSSLAIAKHILNELRREFKL 246
PAATSSLAIA+ + ++ F L
Sbjct: 434 PAATSSLAIARMVADKAAERFTL 456
>sp|Q9N4Z0|L2HDH_CAEEL L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Caenorhabditis
elegans GN=Y45G12B.3 PE=3 SV=2
Length = 433
Score = 253 bits (647), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 131/255 (51%), Positives = 171/255 (67%), Gaps = 9/255 (3%)
Query: 1 MGEEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHL---ESSYALVCAGLQADEMAL 56
GE+F + GG+I + +E +N + I G L E+ + CAGLQ+D +A
Sbjct: 179 FGEDFEKRGGKIYTSYPLEKISDNHDPGYPIRVSSGPALAEFETKNLITCAGLQSDRVAA 238
Query: 57 KSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPN 116
SGCS +P IVPFRGEYLLL P K+HLV+ NIYPVPDP FPFLGVHFTPRM+G +WLGPN
Sbjct: 239 LSGCSTDPKIVPFRGEYLLLKPEKRHLVKTNIYPVPDPRFPFLGVHFTPRMNGDIWLGPN 298
Query: 117 AVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQY 176
AVLA+K+EGY + S +L +L Y G +L K+ +G KE+ + + +V +L+++
Sbjct: 299 AVLAYKREGYSYFSISPSDLLESLSYSGMQKLVKKHFTFGIKELYRGVWIAAQVKQLQRF 358
Query: 177 IEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTL-----HCRNAPSPAATSSLA 231
I E++ D+ RGP+GVRAQA+ S+G+LVDDFVF S L H RNAPSPAATSSLA
Sbjct: 359 IPELKLSDVTRGPAGVRAQAMDSAGNLVDDFVFDSGTGKLSPLLMHVRNAPSPAATSSLA 418
Query: 232 IAKHILNELRREFKL 246
IAK I +E FKL
Sbjct: 419 IAKMITSEAINRFKL 433
>sp|A7MBI3|L2HDH_BOVIN L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Bos taurus
GN=L2HGDH PE=2 SV=1
Length = 463
Score = 253 bits (645), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 126/260 (48%), Positives = 168/260 (64%), Gaps = 16/260 (6%)
Query: 3 EEFCELGGEIRLNQQVESFKENPES-----------VTISTKQGDHLESSYALVCAGLQA 51
++F E GG + N +VE + ES + I +G+ + Y + CAGL +
Sbjct: 204 KDFQEAGGSVLTNFEVEDIEMARESPSRSKDGMKYPIVIRNTKGEEVRCQYVVTCAGLYS 263
Query: 52 DEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 111
D ++ SGC+ P IVPFRG+YL+L P K++LV+GNIYPVPD FPFLGVHFTPRMDG++
Sbjct: 264 DRISELSGCNPNPRIVPFRGDYLVLKPEKRYLVKGNIYPVPDSRFPFLGVHFTPRMDGNI 323
Query: 112 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVN 171
WLGPNA+LAFK+EGYR DFS R++ + G +L + YG EM + F S V
Sbjct: 324 WLGPNAILAFKREGYRPFDFSARDIMDIIIKSGLIKLVFQNFSYGVNEMYKACFLSATVK 383
Query: 172 ELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-----AGRTLHCRNAPSPAA 226
L+++I EI D+ RGP+GVRAQAL G+L++DFVF R LH RNAPSPAA
Sbjct: 384 HLQKFIPEITISDVLRGPAGVRAQALDRDGNLIEDFVFDGGVGDIGNRILHVRNAPSPAA 443
Query: 227 TSSLAIAKHILNELRREFKL 246
TSSLAI+ I +E+++ FKL
Sbjct: 444 TSSLAISGMIADEVQQRFKL 463
>sp|Q9H9P8|L2HDH_HUMAN L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens
GN=L2HGDH PE=1 SV=3
Length = 463
Score = 249 bits (637), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 127/260 (48%), Positives = 168/260 (64%), Gaps = 16/260 (6%)
Query: 3 EEFCELGGEIRLN---QQVESFKENPES--------VTISTKQGDHLESSYALVCAGLQA 51
++F E GG + N + +E KE+P + I +G+ + Y + CAGL +
Sbjct: 204 QDFQEAGGSVLTNFEVKGIEMAKESPSRSIDGMQYPIVIKNTKGEEIRCQYVVTCAGLYS 263
Query: 52 DEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 111
D ++ SGC+ +P IVPFRG+YLLL P K +LV+GNIYPVPD FPFLGVHFTPRMDGS+
Sbjct: 264 DRISELSGCTPDPRIVPFRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTPRMDGSI 323
Query: 112 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVN 171
WLGPNAVLAFK+EGYR DFS ++ + G +L + YG EM + F V
Sbjct: 324 WLGPNAVLAFKREGYRPFDFSATDVMDIIINSGLIKLASQNFSYGVTEMYKACFLGATVK 383
Query: 172 ELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-----AGRTLHCRNAPSPAA 226
L+++I EI DI RGP+GVRAQAL G+LV+DFVF + R LH RNAPSPAA
Sbjct: 384 YLQKFIPEITISDILRGPAGVRAQALDRDGNLVEDFVFDAGVGDIGNRILHVRNAPSPAA 443
Query: 227 TSSLAIAKHILNELRREFKL 246
TSS+AI+ I +E+++ F+L
Sbjct: 444 TSSIAISGMIADEVQQRFEL 463
>sp|Q91YP0|L2HDH_MOUSE L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Mus musculus
GN=L2hgdh PE=2 SV=1
Length = 464
Score = 249 bits (635), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/260 (48%), Positives = 167/260 (64%), Gaps = 16/260 (6%)
Query: 3 EEFCELGGEIRLNQQVESF---KENPES--------VTISTKQGDHLESSYALVCAGLQA 51
++F E GG I + +V+ KEN + + +G + Y + CAGL +
Sbjct: 205 QDFQEAGGSILRDFEVKGIEIAKENSSRSKDGMNYPIAVKNSKGKEIRCRYVVTCAGLYS 264
Query: 52 DEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 111
D ++ SGC+ +P IVPFRG+YL+L P K +LV+GNIYPVPD FPFLGVHFTPR+DG++
Sbjct: 265 DRISELSGCNPDPQIVPFRGDYLVLKPEKGYLVKGNIYPVPDSRFPFLGVHFTPRLDGTI 324
Query: 112 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVN 171
WLGPNAVLAFK+EGYR DF R++ + GF L ++ YG EM + F S V
Sbjct: 325 WLGPNAVLAFKREGYRPFDFDARDVMEVILKSGFINLVFQHFSYGVNEMYKACFLSETVK 384
Query: 172 ELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-----AGRTLHCRNAPSPAA 226
L+++I EI D+ RGP+GVRAQAL G+LV+DFVF A R LH RNAPSPAA
Sbjct: 385 HLQKFIPEITISDVLRGPAGVRAQALDRDGNLVEDFVFDGGTGEIADRVLHVRNAPSPAA 444
Query: 227 TSSLAIAKHILNELRREFKL 246
TSSLAI++ I E ++ FKL
Sbjct: 445 TSSLAISRMIAEEAQQRFKL 464
>sp|Q55GI5|L2HDH_DICDI L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Dictyostelium
discoideum GN=l2hgdh PE=3 SV=1
Length = 446
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/246 (41%), Positives = 156/246 (63%), Gaps = 11/246 (4%)
Query: 11 EIRLNQQVESFKENPESVTISTKQGD---------HLESSYALVCAGLQADEMALKSGCS 61
EI+LN ++FK N + GD + + Y++VC G+ +D +A + +
Sbjct: 196 EIKLNFNAKNFKYNSNDKLLLISTGDDDDDEEQQQSILTKYSIVCGGMNSDRIAKVAYGN 255
Query: 62 LEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF 121
EP+IVPFRG +L P +HL++GN+YP+P+ +FPFLGVHFT R++G VWLGPNAVL+F
Sbjct: 256 DEPSIVPFRGSFLQFKPEFRHLIKGNVYPLPNASFPFLGVHFTKRINGEVWLGPNAVLSF 315
Query: 122 KKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIE 181
+EGY++ DF++ + ++ PG ++L K+ +YG E+ + + LK Y+ I
Sbjct: 316 DREGYKFTDFNLHDTIDLIKNPGLFKLAKKHWKYGLGELYRDFNKDHFIQLLKPYMPNIT 375
Query: 182 AGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRT--LHCRNAPSPAATSSLAIAKHILNE 239
++ G SGVR+QA+S SGDL++DF+F + +H RN+PSPAATSSLAIA I++
Sbjct: 376 VDMLEYGGSGVRSQAISKSGDLIEDFIFDTPSDVPIIHVRNSPSPAATSSLAIAIEIVDL 435
Query: 240 LRREFK 245
+ FK
Sbjct: 436 AQNNFK 441
>sp|P37339|LHGO_ECOLI L-2-hydroxyglutarate oxidase LhgO OS=Escherichia coli (strain K12)
GN=lhgO PE=1 SV=3
Length = 422
Score = 204 bits (519), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 145/243 (59%), Gaps = 4/243 (1%)
Query: 1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 60
M + F GGEI N +V E+ V I T+QG E+S + C+GL AD + G
Sbjct: 154 MAKIFQSRGGEIIYNAEVSGLNEHKNGVVIRTRQGGEYEASTLISCSGLMADRLVKMLG- 212
Query: 61 SLEPA--IVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAV 118
LEP I PFRGEY L P +V IYP+PDP PFLGVH T +DGSV +GPNAV
Sbjct: 213 -LEPGFIICPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAV 271
Query: 119 LAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIE 178
LAFK+EGYR RDFS + L G R+ + R G EM S S + +++Y
Sbjct: 272 LAFKREGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCP 331
Query: 179 EIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILN 238
+ D+Q P+GVRAQA+S G L+DDF+F + RT+H NAPSPAATS++ I HI++
Sbjct: 332 RLSLSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVS 391
Query: 239 ELR 241
+++
Sbjct: 392 KVQ 394
>sp|Q5R9N7|L2HDH_PONAB L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Pongo abelii
GN=L2HGDH PE=2 SV=1
Length = 419
Score = 204 bits (518), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 146/260 (56%), Gaps = 60/260 (23%)
Query: 3 EEFCELGGEIRLNQQVESFKENPES-----------VTISTKQGDHLESSYALVCAGLQA 51
++F + GG + N +V+ + ES + I +G+ + Y + CAGL +
Sbjct: 204 QDFQDAGGSVLTNFEVKDIEMAKESLSRSIDGMQYPIVIKNIKGEEIRCQYVVTCAGLYS 263
Query: 52 DEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV 111
D ++ SGCS +P IV FRG+YLLL P K +LV+GNIYPVPD FPFLGVHFT RMDGS+
Sbjct: 264 DRISELSGCSPDPRIVSFRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTLRMDGSI 323
Query: 112 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVN 171
WLGPNAVLAFK+EGYR DFS ++ +
Sbjct: 324 WLGPNAVLAFKREGYRPFDFSATDVMDII------------------------------- 352
Query: 172 ELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-----AGRTLHCRNAPSPAA 226
I RGP+GVRAQAL G+LVDDFVF + R LH RNAPSPAA
Sbjct: 353 -------------INRGPAGVRAQALDRDGNLVDDFVFDAGVGDIGNRILHVRNAPSPAA 399
Query: 227 TSSLAIAKHILNELRREFKL 246
TSS+AI+ I +E+++ F+L
Sbjct: 400 TSSIAISGMIADEVQQRFEL 419
>sp|Q9ZMY5|MQO_HELPJ Malate:quinone oxidoreductase OS=Helicobacter pylori (strain J99)
GN=mqo PE=3 SV=1
Length = 450
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 11 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 70
++ LN +V+ ++ ++ + ++ + + + + LV AG A +A G L+ +P
Sbjct: 186 QVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCLPVA 245
Query: 71 GEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR--MDGSVWLGPNAV 118
G + + L+RG +Y V +P PF VH P + G +GP A+
Sbjct: 246 GSFYFV----PDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTAL 291
>sp|O24913|MQO_HELPY Malate:quinone oxidoreductase OS=Helicobacter pylori (strain ATCC
700392 / 26695) GN=mqo PE=1 SV=1
Length = 450
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 11 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 70
++ LN +V+ ++ ++ + ++ + + + + LV AG A +A G L+ +P
Sbjct: 186 QVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCLPVA 245
Query: 71 GEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR--MDGSVWLGPNAV 118
G + + L+RG +Y V +P PF VH P + G +GP A+
Sbjct: 246 GSFYFV----PDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTAL 291
>sp|Q1CV68|MQO_HELPH Probable malate:quinone oxidoreductase OS=Helicobacter pylori
(strain HPAG1) GN=mqo PE=3 SV=1
Length = 450
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 11 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 70
++ LN +V+ ++ ++ + ++ + + + + LV AG A +A G L+ +P
Sbjct: 186 QVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCLPVA 245
Query: 71 GEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR--MDGSVWLGPNAV 118
G + + L+RG +Y V +P PF VH P + G +GP A+
Sbjct: 246 GSFYFV----PDLLRGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTAL 291
>sp|B6JPI8|MQO_HELP2 Probable malate:quinone oxidoreductase OS=Helicobacter pylori
(strain P12) GN=mqo PE=3 SV=1
Length = 450
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 11 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 70
++ LN +V+ ++ ++ + ++ + + + + LV AG A +A G L+ +P
Sbjct: 186 QVFLNFKVKKIEKRNDTYAVISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCLPVA 245
Query: 71 GEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR--MDGSVWLGPNAV 118
G + + L++G +Y V +P PF VH P + G +GP A+
Sbjct: 246 GSFYFV----PDLLKGKVYTVQNPKLPFAAVHGDPDAVIKGKTRIGPTAL 291
>sp|Q17VT7|MQO_HELAH Probable malate:quinone oxidoreductase OS=Helicobacter acinonychis
(strain Sheeba) GN=mqo PE=3 SV=1
Length = 450
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 11 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 70
++ LN +V+ ++ ++ + ++ + + + + LV AG A +A G L+ +P
Sbjct: 186 QVFLNFKVKKIEKRNDTYALISEDAEEVYAKFVLVNAGSYALPLAQSMGYGLDLGCLPVA 245
Query: 71 GEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR--MDGSVWLGPNAV 118
G + + L++G +Y V +P PF VH P + G +GP A+
Sbjct: 246 GSFYFV----PDLLKGKVYTVQNPKLPFAAVHGDPDAIIKGKTRIGPTAL 291
>sp|B2HJU4|MQO_MYCMM Probable malate:quinone oxidoreductase OS=Mycobacterium marinum
(strain ATCC BAA-535 / M) GN=mqo PE=3 SV=1
Length = 493
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 14/127 (11%)
Query: 5 FCELGGEIRL-NQQVESFKENPES------VTISTKQGDHLESSYALVCAGLQADEMALK 57
+C G + L Q+V + P+ V T + L++ + V AG A + +
Sbjct: 193 YCVRNGAVALFGQEVRNLVRQPDGGWMLTVVNRRTGEKRKLKTKFVFVGAGGNALSLLQR 252
Query: 58 SGCSLEPAIV--PFRGEYL-LLNPAKQHLVRGNIYPVPDPNFPFLG-VHFTPR-MDGSVW 112
SG P G +L NPA R +Y VP P P LG +H R ++G W
Sbjct: 253 SGIKEINGFAGFPIGGRFLRTANPALTAAHRAKVYGVPAPGAPPLGALHLDLRYVNGKSW 312
Query: 113 L--GPNA 117
L GP A
Sbjct: 313 LMFGPFA 319
>sp|Q6FDG0|MQO_ACIAD Probable malate:quinone oxidoreductase OS=Acinetobacter sp. (strain
ADP1) GN=mqo PE=3 SV=1
Length = 543
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 23/231 (9%)
Query: 30 ISTKQGDHLESSYALVCAGLQADEMALKSGC--SLEPAIVPFRGEYLLL-NP--AKQHLV 84
+ T + DH+++ + + AG + ++ +G S + A P G +L+ NP A +H
Sbjct: 258 LKTGKADHVKTRFVFIGAGGASVKLLQMTGLPESKQYAGFPVGGVFLMTDNPKIAAEHTA 317
Query: 85 RGNIYPVPDPNFPFLGV-HFTPR-MDGS--VWLGPNAVLA--FKKEGYRWRDFSVRELFS 138
+ +Y + P + V H R +DG V GP A + F K+G ++ + +
Sbjct: 318 K--LYGRAELGAPPMSVPHIDTRYIDGKKYVLFGPFATYSNKFLKQGSQFDLLASTNKNN 375
Query: 139 TLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALS 198
L L +Y +++M+ R NELK+Y + D + G R Q +
Sbjct: 376 VLPMTAVGMENLDLVKYLVSQVMMT--DEDRFNELKKYYPNAKREDWRLNQGGQRVQVIK 433
Query: 199 SSGDLVDDF-----VFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRREF 244
VF S R++ SP A++S I +LN L + F
Sbjct: 434 KEEGKPAKLQFGTEVFVSKDRSVTALMGASPGASTSPYI---MLNLLEKAF 481
>sp|B7GYG6|MQO_ACIB3 Probable malate:quinone oxidoreductase OS=Acinetobacter baumannii
(strain AB307-0294) GN=mqo PE=3 SV=1
Length = 546
Score = 35.0 bits (79), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 19/229 (8%)
Query: 30 ISTKQGDHLESSYALVCAGLQADEMALKSGC--SLEPAIVPFRGEYLLL-NPAKQHLVRG 86
+ T + DH+++ + + AG A ++ +G + + A P GE+L+ NPA
Sbjct: 258 LKTGKTDHVKTRFVFIGAGGAAVKLLQLTGLPEAKQYAGFPVGGEFLITDNPAITAQHTA 317
Query: 87 NIYPVPDPNFPFLGV-HFTPR-MDGS--VWLGPNAVLA--FKKEGYRWRDFSVRELFSTL 140
+Y + P + V H R +DG V GP A + F K G + + + L
Sbjct: 318 KVYGRAELGAPPMSVPHIDTRYIDGKKYVLFGPFATYSNKFLKNGSQLDLLASTNKSNVL 377
Query: 141 RYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSS 200
L +Y +++MS R+NEL++Y + +A D + G R Q +
Sbjct: 378 LMTTVGLENLDLVKYLVSQVMMS--DEDRLNELRKYYPDAKAEDWRLSQGGQRVQIIKKE 435
Query: 201 GDLVDDF-----VFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRREF 244
+F S + SP A++S I +LN L + F
Sbjct: 436 PGKPATLQFGTEIFASKDGAVTALLGASPGASTSPYI---MLNLLEKAF 481
>sp|A3M361|MQO_ACIBT Probable malate:quinone oxidoreductase OS=Acinetobacter baumannii
(strain ATCC 17978 / NCDC KC 755) GN=mqo PE=3 SV=2
Length = 546
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 19/229 (8%)
Query: 30 ISTKQGDHLESSYALVCAGLQADEMALKSGC--SLEPAIVPFRGEYLLL-NPAKQHLVRG 86
+ T + DH+++ + + AG A ++ +G + + A P GE+L+ NPA
Sbjct: 258 LKTGKTDHVKTRFVFIGAGGAAVKLLQLTGLPEAKQYAGFPVGGEFLITDNPAITAQHTA 317
Query: 87 NIYPVPDPNFPFLGV-HFTPR-MDGS--VWLGPNAVLA--FKKEGYRWRDFSVRELFSTL 140
+Y + P + V H R +DG V GP A + F K G + + + L
Sbjct: 318 KVYGRAELGAPPMSVPHIDTRYIDGKKYVLFGPFATYSNKFLKNGSQLDLLASTNKSNVL 377
Query: 141 RYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSS 200
L +Y +++MS R+NEL++Y + +A D + G R Q +
Sbjct: 378 PMTTVGLENLDLVKYLVSQVMMS--DEDRLNELRKYYPDAKAEDWRLSQGGQRVQIIKKE 435
Query: 201 GDLVDDF-----VFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRREF 244
+F S + SP A++S I +LN L + F
Sbjct: 436 PGKPATLQFGTEIFASKDGAVTALLGASPGASTSPYI---MLNLLEKAF 481
>sp|B2HV78|MQO_ACIBC Probable malate:quinone oxidoreductase OS=Acinetobacter baumannii
(strain ACICU) GN=mqo PE=3 SV=1
Length = 546
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 19/229 (8%)
Query: 30 ISTKQGDHLESSYALVCAGLQADEMALKSGC--SLEPAIVPFRGEYLLL-NPAKQHLVRG 86
+ T + DH+++ + + AG A ++ +G + + A P GE+L+ NPA
Sbjct: 258 LKTGKTDHVKTRFVFIGAGGAAVKLLQLTGLPEAKQYAGFPVGGEFLITDNPAITAQHTA 317
Query: 87 NIYPVPDPNFPFLGV-HFTPR-MDGS--VWLGPNAVLA--FKKEGYRWRDFSVRELFSTL 140
+Y + P + V H R +DG V GP A + F K G + + + L
Sbjct: 318 KVYGRAELGAPPMSVPHIDTRYIDGKKYVLFGPFATYSNKFLKNGSQLDLLASTNKSNVL 377
Query: 141 RYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSS 200
L +Y +++MS R+NEL++Y + +A D + G R Q +
Sbjct: 378 PMTTVGLENLDLVKYLVSQVMMS--DEDRLNELRKYYPDAKAEDWRLSQGGQRVQIIKKE 435
Query: 201 GDLVDDF-----VFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRREF 244
+F S + SP A++S I +LN L + F
Sbjct: 436 PGKPATLQFGTEIFASKDGAVTALLGASPGASTSPYI---MLNLLEKAF 481
>sp|B0V946|MQO_ACIBY Probable malate:quinone oxidoreductase OS=Acinetobacter baumannii
(strain AYE) GN=mqo PE=3 SV=1
Length = 546
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 19/229 (8%)
Query: 30 ISTKQGDHLESSYALVCAGLQADEMALKSGC--SLEPAIVPFRGEYLLL-NPAKQHLVRG 86
+ T + DH+++ + + AG A ++ +G + + A P GE+L+ NPA
Sbjct: 258 LKTGKTDHVKTRFVFIGAGGAAVKLLQLTGLPEAKQYAGFPVGGEFLITDNPAITAQHTA 317
Query: 87 NIYPVPDPNFPFLGV-HFTPR-MDGS--VWLGPNAVLA--FKKEGYRWRDFSVRELFSTL 140
+Y + P + V H R +DG V GP A + F K G + + + L
Sbjct: 318 KVYGRAELGAPPMSVPHIDTRYIDGKKYVLFGPFATYSNKFLKNGSQLDLLASTNKSNVL 377
Query: 141 RYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSS 200
L +Y +++MS R+NEL++Y + +A D + G R Q +
Sbjct: 378 PMTTVGLENLDLVKYLVSQVMMS--DEDRLNELRKYYPDAKAEDWRLSQGGQRVQIIKKE 435
Query: 201 GDLVDDF-----VFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRREF 244
+F S + SP A++S I +LN L + F
Sbjct: 436 PGKPATLQFGTEIFASKDGAVTALLGASPGASTSPYI---MLNLLEKAF 481
>sp|B7I894|MQO_ACIB5 Probable malate:quinone oxidoreductase OS=Acinetobacter baumannii
(strain AB0057) GN=mqo PE=3 SV=1
Length = 546
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 19/229 (8%)
Query: 30 ISTKQGDHLESSYALVCAGLQADEMALKSGC--SLEPAIVPFRGEYLLL-NPAKQHLVRG 86
+ T + DH+++ + + AG A ++ +G + + A P GE+L+ NPA
Sbjct: 258 LKTGKTDHVKTRFVFIGAGGAAVKLLQLTGLPEAKQYAGFPVGGEFLITDNPAITAQHTA 317
Query: 87 NIYPVPDPNFPFLGV-HFTPR-MDGS--VWLGPNAVLA--FKKEGYRWRDFSVRELFSTL 140
+Y + P + V H R +DG V GP A + F K G + + + L
Sbjct: 318 KVYGRAELGAPPMSVPHIDTRYIDGKKYVLFGPFATYSNKFLKNGSQLDLLASTNKSNVL 377
Query: 141 RYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSS 200
L +Y +++MS R+NEL++Y + +A D + G R Q +
Sbjct: 378 PMTTVGLENLDLVKYLVSQVMMS--DEDRLNELRKYYPDAKAEDWRLSQGGQRVQIIKKE 435
Query: 201 GDLVDDF-----VFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRREF 244
+F S + SP A++S I +LN L + F
Sbjct: 436 PGKPATLQFGTEIFASKDGAVTALLGASPGASTSPYI---MLNLLEKAF 481
>sp|Q05355|HYDL_STRHA Putative polyketide hydroxylase OS=Streptomyces halstedii GN=schC
PE=3 SV=1
Length = 555
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 3 EEFCELGGEIRLNQQVESFKENPESVTI---STKQGDH 37
+ ELGGEIR + +++SF+++P VT S + G+H
Sbjct: 134 DHAVELGGEIRFSTELQSFEQDPAGVTAVIKSRRSGEH 171
>sp|B4QC10|BRCA2_DROSI Breast cancer type 2 susceptibility protein homolog OS=Drosophila
simulans GN=Brca2 PE=3 SV=1
Length = 944
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 189 PSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRR 242
P+ + + LS+ GDL+++F+F+ + C N PS + ++ + K +N ++R
Sbjct: 368 PNAAQQENLSNDGDLLEEFLFNE-WHPMQCSNGPS-TSNDAIKVPKEEINSIKR 419
>sp|Q46BZ5|SYC_METBF Cysteine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=cysS PE=3 SV=1
Length = 471
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 52 DEMALKSGCSLEP-AIVPFRGEYLLLNPAKQHLVRGNIYPVPD---------PNFPFLGV 101
+E+A G + +P A GE+L++ K +GN++ +P+ F FL V
Sbjct: 241 NEIAQSEGATGKPFACYWIHGEHLIVEGEKMSKSKGNVFTLPEIVGKYGGEVVRFMFLSV 300
Query: 102 HFTPRMDGSVWLGPNAVLAF--KKEGYRWRDFSVRELFSTLRYPG 144
H+ ++D S NA + KE +FS+ +T YPG
Sbjct: 301 HYRKKLDYSDAFAENAKNNYLRLKETLENLEFSLESAENT-DYPG 344
>sp|B4IH30|BRCA2_DROSE Breast cancer type 2 susceptibility protein homolog OS=Drosophila
sechellia GN=Brca2 PE=3 SV=1
Length = 938
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 177 IEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHI 236
E+ E + P + + LS+ GDL+++F+F+ + C N PS + ++ + K
Sbjct: 350 TEKNEGTTVLDQPYAAQQENLSNDGDLLEEFLFNE-WHPMQCSNGPS-TSNDAIQVPKEE 407
Query: 237 LNELRR 242
+N ++R
Sbjct: 408 INSIKR 413
>sp|P96633|YDCP_BACSU Putative uncharacterized protein YdcP OS=Bacillus subtilis (strain
168) GN=ydcP PE=4 SV=1
Length = 126
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 23 ENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPA 65
+NP+ ++T Q D S+YA V L+AD++ +K G S++PA
Sbjct: 78 KNPKISAMATSQRD---STYANVMWKLEADDIVVKGGSSVKPA 117
>sp|Q3AAE9|MURA1_CARHZ UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1
OS=Carboxydothermus hydrogenoformans (strain Z-2901 /
DSM 6008) GN=murA1 PE=3 SV=1
Length = 420
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 60
EE +G +IRL ++ K P+ S D L ++ ALV AGL A+ M + G
Sbjct: 334 EELRRMGADIRLESRIAVIKGVPKLTGASVIAHD-LRAAAALVIAGLAAEGMTVLEGI 390
>sp|Q68FX7|THOC5_RAT THO complex subunit 5 homolog OS=Rattus norvegicus GN=Thoc5 PE=2
SV=1
Length = 682
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 22 KENPESVTIS--TKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA 79
KE P+ ++ ++ H+E++ L+ +Q+ K SLE IVP E L PA
Sbjct: 453 KEQPQHTVMADHSQSASHMETTMKLLKTRVQSRLALHKQFASLEHGIVPVTSECQYLFPA 512
Query: 80 K--QHLVRGNIYPVPDPNFPFLGVHFT 104
K LV+ I D ++ +HFT
Sbjct: 513 KVVSRLVKWMIMAHED----YMELHFT 535
>sp|Q8D4F7|NORW_VIBVU Nitric oxide reductase FlRd-NAD(+) reductase OS=Vibrio vulnificus
(strain CMCP6) GN=norW PE=3 SV=1
Length = 382
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE-MALKSGCS 61
++ + G ++ LN +VES E +++ I+ G L AGL+A+ +A ++G S
Sbjct: 193 QQLMKHGIQLALNSRVESVTEQGQTLAIALHDGREFAVDAVLCAAGLKANTAVAREAGLS 252
Query: 62 LEPAI 66
+E I
Sbjct: 253 VERGI 257
>sp|Q03JS2|FENR_STRTD Ferredoxin--NADP reductase OS=Streptococcus thermophilus (strain
ATCC BAA-491 / LMD-9) GN=STER_1382 PE=3 SV=1
Length = 332
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 12 IRLNQQVESFKENPESVTISTKQGDHLESSYALVCA 47
I L ++V++FK+ TI+T +G HL + + C
Sbjct: 85 IHLKEEVQTFKKTDGIFTIATSKGQHLSKAIVIACG 120
>sp|Q5M3J6|FENR_STRT2 Ferredoxin--NADP reductase OS=Streptococcus thermophilus (strain
ATCC BAA-250 / LMG 18311) GN=stu1417 PE=3 SV=1
Length = 332
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 12 IRLNQQVESFKENPESVTISTKQGDHLESSYALVCA 47
I L ++V++FK+ TI+T +G HL + + C
Sbjct: 85 IHLKEEVQTFKKTDGIFTIATSKGQHLSKAIVIACG 120
>sp|Q5LYY3|FENR_STRT1 Ferredoxin--NADP reductase OS=Streptococcus thermophilus (strain
CNRZ 1066) GN=str1417 PE=3 SV=1
Length = 332
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 12 IRLNQQVESFKENPESVTISTKQGDHLESSYALVCA 47
I L ++V++FK+ TI+T +G HL + + C
Sbjct: 85 IHLKEEVQTFKKTDGIFTIATSKGQHLSKAIVIACG 120
>sp|Q8PVQ1|SYC_METMA Cysteine--tRNA ligase OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=cysS
PE=3 SV=1
Length = 473
Score = 30.8 bits (68), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 52 DEMALKSGCSLEPAIVPF-RGEYLLLNPAKQHLVRGNIYPVPD---------PNFPFLGV 101
+E+A G + P + + GE+L++ K +GN++ +P+ F FL V
Sbjct: 241 NEIAQSEGATGIPFVRHWIHGEHLIVEGEKMSKSKGNVFTLPEIVEMYGGEVVRFMFLSV 300
Query: 102 HFTPRMDGSVWLGPNA 117
H+ ++D S NA
Sbjct: 301 HYRKKLDYSETFAENA 316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,759,922
Number of Sequences: 539616
Number of extensions: 4149149
Number of successful extensions: 8190
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 8163
Number of HSP's gapped (non-prelim): 35
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)