Query psy3952
Match_columns 252
No_of_seqs 141 out of 1279
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 21:33:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11728 hydroxyglutarate oxid 100.0 4.6E-34 1E-38 254.2 23.0 238 2-240 156-393 (393)
2 KOG2665|consensus 100.0 1.9E-28 4.1E-33 203.1 13.3 240 2-241 203-452 (453)
3 PTZ00383 malate:quinone oxidor 100.0 3.5E-27 7.7E-32 214.0 18.5 233 1-244 217-475 (497)
4 PRK13339 malate:quinone oxidor 99.9 7.6E-26 1.6E-30 204.8 21.3 233 2-242 191-451 (497)
5 PRK05257 malate:quinone oxidor 99.9 1.2E-25 2.5E-30 204.6 20.0 235 1-242 189-449 (494)
6 TIGR01320 mal_quin_oxido malat 99.9 1.8E-25 3.9E-30 203.1 20.9 233 1-242 184-444 (483)
7 TIGR02352 thiamin_ThiO glycine 99.9 3.4E-25 7.4E-30 192.7 15.0 189 1-242 143-335 (337)
8 TIGR03197 MnmC_Cterm tRNA U-34 99.9 5.7E-25 1.2E-29 195.0 13.7 191 2-243 142-362 (381)
9 COG0579 Predicted dehydrogenas 99.9 2.9E-24 6.3E-29 189.4 16.7 210 1-243 159-375 (429)
10 PRK00711 D-amino acid dehydrog 99.9 6.6E-24 1.4E-28 190.1 17.3 192 2-243 208-402 (416)
11 TIGR03377 glycerol3P_GlpA glyc 99.9 1.6E-23 3.4E-28 192.6 20.1 201 1-246 134-350 (516)
12 PRK13369 glycerol-3-phosphate 99.9 3.1E-23 6.6E-28 190.0 21.2 205 2-247 162-381 (502)
13 PRK12266 glpD glycerol-3-phosp 99.9 4.1E-23 8.9E-28 189.2 21.6 203 2-247 162-382 (508)
14 PF01266 DAO: FAD dependent ox 99.9 8.6E-24 1.9E-28 184.5 16.2 202 1-239 153-358 (358)
15 TIGR01373 soxB sarcosine oxida 99.9 2.8E-23 6.2E-28 185.7 19.6 193 1-243 189-385 (407)
16 PRK12409 D-amino acid dehydrog 99.9 5.6E-23 1.2E-27 183.9 17.3 196 1-243 203-406 (410)
17 PRK11101 glpA sn-glycerol-3-ph 99.9 1.6E-22 3.5E-27 186.7 20.1 201 2-247 156-374 (546)
18 PRK11259 solA N-methyltryptoph 99.9 1.4E-22 3E-27 179.2 17.3 195 2-243 156-360 (376)
19 PLN02464 glycerol-3-phosphate 99.9 4E-22 8.6E-27 186.4 21.0 202 1-244 238-455 (627)
20 COG0578 GlpA Glycerol-3-phosph 99.9 4.1E-22 9E-27 179.2 19.0 205 2-247 171-390 (532)
21 COG0665 DadA Glycine/D-amino a 99.9 2.4E-22 5.3E-27 178.1 17.1 202 1-243 162-367 (387)
22 TIGR03329 Phn_aa_oxid putative 99.9 1.3E-22 2.9E-27 184.1 15.7 199 1-243 189-394 (460)
23 PRK01747 mnmC bifunctional tRN 99.9 4.5E-22 9.8E-27 187.9 14.3 192 2-243 415-633 (662)
24 TIGR01377 soxA_mon sarcosine o 99.9 3E-21 6.6E-26 170.9 18.6 199 2-243 152-360 (380)
25 KOG2844|consensus 99.9 1.3E-21 2.9E-26 175.8 14.1 205 1-243 193-401 (856)
26 TIGR03364 HpnW_proposed FAD de 99.9 3E-21 6.5E-26 170.2 13.8 186 2-235 152-365 (365)
27 KOG2853|consensus 99.8 8.2E-19 1.8E-23 147.5 16.3 207 2-250 250-493 (509)
28 KOG0042|consensus 99.7 3.2E-17 7E-22 144.9 11.9 208 2-249 231-454 (680)
29 PF06039 Mqo: Malate:quinone o 99.7 3.9E-16 8.5E-21 137.2 16.3 234 2-240 188-445 (488)
30 KOG3923|consensus 99.7 7.1E-16 1.5E-20 127.6 10.3 177 2-249 158-342 (342)
31 KOG2820|consensus 99.6 1.1E-14 2.4E-19 122.6 16.3 200 3-245 161-380 (399)
32 KOG2852|consensus 99.1 4.8E-09 1E-13 87.2 14.1 198 2-243 154-363 (380)
33 TIGR02032 GG-red-SF geranylger 98.5 3.6E-05 7.7E-10 65.4 18.9 59 2-61 98-157 (295)
34 PRK10157 putative oxidoreducta 98.4 4.8E-06 1E-10 75.3 13.9 59 1-61 114-173 (428)
35 PRK08773 2-octaprenyl-3-methyl 98.3 6.9E-05 1.5E-09 66.8 17.5 59 2-61 120-178 (392)
36 TIGR01988 Ubi-OHases Ubiquinon 98.3 0.00011 2.3E-09 65.1 17.6 59 2-61 113-172 (385)
37 PLN02697 lycopene epsilon cycl 98.3 7.6E-05 1.6E-09 69.0 17.1 76 2-78 199-275 (529)
38 TIGR01790 carotene-cycl lycope 98.2 0.00016 3.4E-09 64.3 18.0 73 2-77 92-165 (388)
39 TIGR03378 glycerol3P_GlpB glyc 98.2 6E-06 1.3E-10 73.7 7.9 59 1-59 269-331 (419)
40 PRK06185 hypothetical protein; 98.1 0.00022 4.8E-09 63.8 17.2 71 3-76 116-191 (407)
41 PRK07608 ubiquinone biosynthes 98.1 0.00022 4.7E-09 63.3 17.0 58 2-61 118-176 (388)
42 PRK08020 ubiF 2-octaprenyl-3-m 98.1 0.00044 9.4E-09 61.6 17.9 58 3-61 120-178 (391)
43 TIGR01984 UbiH 2-polyprenyl-6- 98.1 0.00037 8E-09 61.7 17.0 59 2-61 112-171 (382)
44 TIGR02023 BchP-ChlP geranylger 98.0 0.00086 1.9E-08 59.8 18.0 59 1-61 98-164 (388)
45 PRK05732 2-octaprenyl-6-methox 98.0 0.0008 1.7E-08 59.8 17.7 52 8-60 126-177 (395)
46 PRK07333 2-octaprenyl-6-methox 98.0 0.00017 3.7E-09 64.4 12.8 59 2-61 118-176 (403)
47 COG0644 FixC Dehydrogenases (f 97.9 0.0014 3.1E-08 58.6 18.0 60 1-61 101-161 (396)
48 PF05834 Lycopene_cycl: Lycope 97.9 0.0016 3.4E-08 57.9 17.3 192 3-242 95-290 (374)
49 PRK10015 oxidoreductase; Provi 97.9 0.00077 1.7E-08 61.0 15.5 58 1-60 114-172 (429)
50 COG2081 Predicted flavoprotein 97.8 7.1E-05 1.5E-09 65.6 7.1 59 2-60 118-186 (408)
51 PF13738 Pyr_redox_3: Pyridine 97.8 3.3E-05 7.2E-10 62.1 4.8 50 3-52 90-139 (203)
52 PRK06834 hypothetical protein; 97.7 0.00013 2.7E-09 67.2 8.3 59 2-61 107-165 (488)
53 PLN02463 lycopene beta cyclase 97.7 0.0019 4.1E-08 58.7 15.5 50 2-52 121-170 (447)
54 PF03486 HI0933_like: HI0933-l 97.7 8.1E-05 1.7E-09 66.8 6.5 67 2-69 116-193 (409)
55 PRK07233 hypothetical protein; 97.7 0.0053 1.1E-07 55.2 18.3 50 1-50 204-253 (434)
56 PRK05714 2-octaprenyl-3-methyl 97.7 0.0002 4.4E-09 64.1 8.9 59 2-61 119-177 (405)
57 TIGR00275 flavoprotein, HI0933 97.7 0.00029 6.3E-09 63.1 9.7 69 2-72 112-190 (400)
58 PRK07494 2-octaprenyl-6-methox 97.7 0.0034 7.5E-08 55.7 16.2 59 2-61 118-176 (388)
59 TIGR02730 carot_isom carotene 97.5 0.00022 4.8E-09 65.6 6.6 52 1-52 235-287 (493)
60 PRK09126 hypothetical protein; 97.5 0.0053 1.1E-07 54.6 15.1 55 6-61 122-176 (392)
61 PRK08244 hypothetical protein; 97.5 0.008 1.7E-07 55.4 16.6 58 2-60 107-167 (493)
62 PRK07190 hypothetical protein; 97.4 0.00083 1.8E-08 61.8 9.2 59 2-61 116-174 (487)
63 PRK06847 hypothetical protein; 97.4 0.00064 1.4E-08 60.1 7.6 59 2-60 114-172 (375)
64 TIGR03862 flavo_PP4765 unchara 97.4 0.0007 1.5E-08 60.0 7.6 66 2-70 93-169 (376)
65 PRK06184 hypothetical protein; 97.3 0.0011 2.5E-08 61.1 8.7 59 2-61 116-177 (502)
66 PRK08163 salicylate hydroxylas 97.1 0.0017 3.6E-08 57.9 7.3 59 2-60 116-175 (396)
67 PRK04176 ribulose-1,5-biphosph 97.1 0.0015 3.2E-08 55.0 6.6 55 1-55 110-177 (257)
68 TIGR02734 crtI_fam phytoene de 97.1 0.0014 3E-08 60.5 6.7 51 1-51 225-276 (502)
69 PRK06134 putative FAD-binding 97.0 0.0017 3.6E-08 61.1 7.1 57 2-58 224-285 (581)
70 TIGR02028 ChlP geranylgeranyl 97.0 0.071 1.5E-06 47.8 16.7 58 1-60 99-168 (398)
71 PLN00093 geranylgeranyl diphos 96.9 0.097 2.1E-06 47.7 17.1 59 1-61 138-208 (450)
72 COG2509 Uncharacterized FAD-de 96.9 0.0034 7.4E-08 56.0 7.0 56 2-57 180-236 (486)
73 PRK07588 hypothetical protein; 96.8 0.0046 1E-07 55.0 7.3 47 7-53 114-160 (391)
74 PRK04965 NADH:flavorubredoxin 96.7 0.0061 1.3E-07 54.1 7.9 58 3-60 191-249 (377)
75 TIGR01292 TRX_reduct thioredox 96.7 0.0049 1.1E-07 52.4 6.8 49 3-52 65-113 (300)
76 TIGR01810 betA choline dehydro 96.7 0.0043 9.4E-08 57.7 6.7 57 4-60 202-265 (532)
77 PRK08013 oxidoreductase; Provi 96.6 0.012 2.5E-07 52.8 8.9 59 2-61 118-177 (400)
78 TIGR01813 flavo_cyto_c flavocy 96.6 0.0057 1.2E-07 55.4 6.7 51 2-52 137-193 (439)
79 PRK08274 tricarballylate dehyd 96.5 0.0058 1.3E-07 55.8 6.4 50 2-51 138-192 (466)
80 PF01593 Amino_oxidase: Flavin 96.5 0.0035 7.6E-08 55.6 4.6 48 4-51 218-265 (450)
81 PRK08849 2-octaprenyl-3-methyl 96.5 0.014 3E-07 51.9 8.3 52 8-60 124-175 (384)
82 COG0654 UbiH 2-polyprenyl-6-me 96.5 0.32 6.8E-06 43.4 16.9 57 2-59 111-169 (387)
83 TIGR02485 CobZ_N-term precorri 96.4 0.0082 1.8E-07 54.3 6.8 51 2-52 130-184 (432)
84 PRK08850 2-octaprenyl-6-methox 96.4 0.022 4.8E-07 51.0 9.2 57 3-60 119-176 (405)
85 PRK09897 hypothetical protein; 96.4 0.0095 2.1E-07 55.3 6.8 49 3-51 115-166 (534)
86 PRK06996 hypothetical protein; 96.3 0.023 5E-07 50.8 8.8 60 1-60 121-183 (398)
87 PRK08132 FAD-dependent oxidore 96.3 0.024 5.2E-07 53.0 9.0 58 3-61 133-194 (547)
88 PRK09754 phenylpropionate diox 96.2 0.02 4.4E-07 51.2 8.1 57 3-60 194-251 (396)
89 PRK06183 mhpA 3-(3-hydroxyphen 96.1 0.055 1.2E-06 50.5 10.6 57 3-60 121-182 (538)
90 PF00890 FAD_binding_2: FAD bi 96.1 0.017 3.7E-07 51.9 7.0 51 2-52 148-204 (417)
91 PRK07364 2-octaprenyl-6-methox 96.1 0.03 6.5E-07 50.2 8.5 57 3-60 129-189 (415)
92 TIGR01789 lycopene_cycl lycope 96.1 0.3 6.4E-06 43.4 14.6 60 9-79 100-159 (370)
93 COG1233 Phytoene dehydrogenase 96.1 0.01 2.2E-07 54.7 5.4 49 1-49 230-279 (487)
94 PLN02612 phytoene desaturase 96.1 0.014 3E-07 54.8 6.3 49 2-50 315-365 (567)
95 COG0492 TrxB Thioredoxin reduc 96.1 0.012 2.5E-07 50.8 5.4 51 2-54 68-118 (305)
96 PLN02172 flavin-containing mon 96.1 0.015 3.2E-07 53.2 6.3 50 3-52 119-174 (461)
97 PRK06126 hypothetical protein; 96.1 0.018 4E-07 53.7 7.1 57 3-60 134-196 (545)
98 PF04820 Trp_halogenase: Trypt 96.0 0.014 3E-07 53.3 5.9 51 1-52 160-212 (454)
99 TIGR03467 HpnE squalene-associ 96.0 0.0098 2.1E-07 53.1 4.8 49 3-51 205-254 (419)
100 PRK06481 fumarate reductase fl 95.9 0.02 4.4E-07 52.9 6.8 51 2-52 197-252 (506)
101 PRK08010 pyridine nucleotide-d 95.9 0.021 4.5E-07 51.8 6.6 50 3-53 207-256 (441)
102 PRK09564 coenzyme A disulfide 95.9 0.029 6.2E-07 50.9 7.4 57 3-60 199-256 (444)
103 PRK15317 alkyl hydroperoxide r 95.9 0.026 5.6E-07 52.4 7.1 49 3-51 274-322 (517)
104 PRK08401 L-aspartate oxidase; 95.8 0.021 4.6E-07 52.2 6.4 50 2-53 127-177 (466)
105 PRK05329 anaerobic glycerol-3- 95.8 0.026 5.6E-07 51.0 6.7 50 2-51 266-318 (422)
106 PRK05868 hypothetical protein; 95.8 0.026 5.7E-07 50.0 6.7 52 6-58 115-166 (372)
107 PRK14727 putative mercuric red 95.8 0.025 5.3E-07 52.0 6.6 50 3-53 236-285 (479)
108 PTZ00363 rab-GDP dissociation 95.8 0.029 6.3E-07 51.0 6.8 52 1-52 238-291 (443)
109 TIGR03140 AhpF alkyl hydropero 95.7 0.031 6.8E-07 51.8 7.1 49 3-51 275-323 (515)
110 PRK07121 hypothetical protein; 95.7 0.024 5.3E-07 52.2 6.3 51 2-52 184-240 (492)
111 TIGR00292 thiazole biosynthesi 95.7 0.034 7.3E-07 46.8 6.5 51 2-52 107-171 (254)
112 PRK12842 putative succinate de 95.7 0.037 7.9E-07 52.1 7.4 54 2-55 221-279 (574)
113 PRK05249 soluble pyridine nucl 95.7 0.033 7.1E-07 50.8 6.8 51 3-53 224-274 (461)
114 PRK12843 putative FAD-binding 95.7 0.029 6.2E-07 52.9 6.5 52 2-53 228-284 (578)
115 PF01494 FAD_binding_3: FAD bi 95.6 0.021 4.6E-07 49.4 5.2 59 1-60 117-180 (356)
116 PLN02268 probable polyamine ox 95.6 0.029 6.2E-07 50.7 6.1 45 7-51 208-252 (435)
117 PF00732 GMC_oxred_N: GMC oxid 95.6 0.019 4E-07 49.0 4.6 57 4-60 201-268 (296)
118 PRK06617 2-octaprenyl-6-methox 95.6 0.038 8.1E-07 49.0 6.6 57 2-60 111-168 (374)
119 TIGR02733 desat_CrtD C-3',4' d 95.5 0.027 5.9E-07 51.8 5.8 51 1-51 238-294 (492)
120 PRK11445 putative oxidoreducta 95.5 0.048 1E-06 47.9 7.1 55 5-60 108-165 (351)
121 PRK06854 adenylylsulfate reduc 95.5 0.039 8.4E-07 52.3 6.9 50 3-52 140-196 (608)
122 KOG0404|consensus 95.5 0.011 2.4E-07 48.2 2.8 52 1-54 76-127 (322)
123 PLN02676 polyamine oxidase 95.5 0.027 5.9E-07 51.9 5.7 42 10-51 245-286 (487)
124 PRK06116 glutathione reductase 95.5 0.038 8.2E-07 50.3 6.5 50 3-52 216-266 (450)
125 PRK12839 hypothetical protein; 95.5 0.039 8.5E-07 51.9 6.7 54 1-54 220-279 (572)
126 PLN02927 antheraxanthin epoxid 95.4 0.057 1.2E-06 51.5 7.7 54 7-60 203-257 (668)
127 TIGR00551 nadB L-aspartate oxi 95.4 0.028 6.1E-07 51.8 5.6 52 2-53 135-191 (488)
128 TIGR01989 COQ6 Ubiquinone bios 95.4 0.096 2.1E-06 47.5 8.8 58 3-61 125-192 (437)
129 PRK14694 putative mercuric red 95.4 0.048 1E-06 49.9 6.9 50 3-53 226-275 (468)
130 PRK08626 fumarate reductase fl 95.4 0.041 9E-07 52.6 6.6 51 2-52 165-221 (657)
131 PRK12416 protoporphyrinogen ox 95.3 0.033 7.3E-07 50.8 5.7 40 10-49 239-278 (463)
132 TIGR01812 sdhA_frdA_Gneg succi 95.3 0.05 1.1E-06 51.0 7.0 51 2-52 136-192 (566)
133 TIGR02731 phytoene_desat phyto 95.3 0.039 8.5E-07 50.2 6.1 50 2-51 220-276 (453)
134 TIGR00562 proto_IX_ox protopor 95.2 0.048 1E-06 49.6 6.4 41 10-50 238-278 (462)
135 PRK05945 sdhA succinate dehydr 95.2 0.036 7.7E-07 52.2 5.6 51 2-52 142-198 (575)
136 PRK06175 L-aspartate oxidase; 95.2 0.056 1.2E-06 49.1 6.6 50 3-52 136-190 (433)
137 TIGR03219 salicylate_mono sali 95.2 0.049 1.1E-06 48.9 6.2 44 9-52 117-160 (414)
138 PRK07573 sdhA succinate dehydr 95.2 0.055 1.2E-06 51.6 6.7 50 3-52 178-233 (640)
139 KOG4254|consensus 95.1 0.022 4.7E-07 51.0 3.6 52 1-52 270-322 (561)
140 TIGR01424 gluta_reduc_2 glutat 95.1 0.065 1.4E-06 48.8 6.7 50 3-52 215-264 (446)
141 TIGR01350 lipoamide_DH dihydro 95.0 0.067 1.5E-06 48.7 6.6 50 3-52 219-270 (461)
142 PRK12844 3-ketosteroid-delta-1 95.0 0.055 1.2E-06 50.7 6.1 51 2-52 215-270 (557)
143 PRK07804 L-aspartate oxidase; 94.9 0.067 1.4E-06 50.0 6.5 51 2-52 151-211 (541)
144 PRK06753 hypothetical protein; 94.9 0.081 1.8E-06 46.6 6.7 51 9-60 110-160 (373)
145 PRK06416 dihydrolipoamide dehy 94.8 0.069 1.5E-06 48.7 6.3 50 3-52 221-273 (462)
146 TIGR03143 AhpF_homolog putativ 94.8 0.073 1.6E-06 49.9 6.5 48 3-52 68-115 (555)
147 PRK07236 hypothetical protein; 94.8 0.09 1.9E-06 46.7 6.7 49 9-58 112-160 (386)
148 TIGR02732 zeta_caro_desat caro 94.8 0.075 1.6E-06 48.8 6.3 50 2-51 226-284 (474)
149 PLN02507 glutathione reductase 94.8 0.09 1.9E-06 48.6 6.8 50 3-52 252-301 (499)
150 PRK07045 putative monooxygenas 94.7 0.09 2E-06 46.7 6.6 53 7-60 119-174 (388)
151 TIGR00136 gidA glucose-inhibit 94.7 0.077 1.7E-06 49.9 6.1 47 4-51 105-154 (617)
152 TIGR01816 sdhA_forward succina 94.6 0.093 2E-06 49.3 6.7 51 2-52 126-182 (565)
153 PRK11883 protoporphyrinogen ox 94.6 0.11 2.3E-06 47.0 7.0 40 11-50 235-274 (451)
154 PRK08275 putative oxidoreducta 94.6 0.093 2E-06 49.2 6.6 51 2-52 144-201 (554)
155 PRK12835 3-ketosteroid-delta-1 94.6 0.077 1.7E-06 50.0 6.1 50 3-52 221-276 (584)
156 PRK13748 putative mercuric red 94.6 0.097 2.1E-06 49.0 6.6 50 3-53 318-367 (561)
157 PRK05192 tRNA uridine 5-carbox 94.6 0.09 2E-06 49.5 6.3 47 5-52 110-158 (618)
158 PTZ00139 Succinate dehydrogena 94.5 0.11 2.3E-06 49.4 6.7 51 2-52 173-230 (617)
159 PRK08205 sdhA succinate dehydr 94.4 0.11 2.4E-06 49.0 6.7 51 2-52 147-207 (583)
160 PRK02106 choline dehydrogenase 94.4 0.1 2.2E-06 48.9 6.4 54 7-60 213-272 (560)
161 PRK07512 L-aspartate oxidase; 94.4 0.072 1.6E-06 49.4 5.2 49 3-51 144-197 (513)
162 PRK12845 3-ketosteroid-delta-1 94.3 0.11 2.5E-06 48.7 6.6 52 2-53 224-280 (564)
163 PRK09078 sdhA succinate dehydr 94.3 0.12 2.6E-06 48.9 6.6 51 2-52 156-213 (598)
164 PRK07843 3-ketosteroid-delta-1 94.2 0.12 2.5E-06 48.6 6.4 50 3-52 216-270 (557)
165 PRK08071 L-aspartate oxidase; 94.2 0.078 1.7E-06 49.2 5.2 45 8-52 142-191 (510)
166 PRK07251 pyridine nucleotide-d 94.2 0.13 2.8E-06 46.6 6.6 49 3-52 206-254 (438)
167 PRK06452 sdhA succinate dehydr 94.2 0.12 2.6E-06 48.6 6.4 50 2-51 143-198 (566)
168 PRK07845 flavoprotein disulfid 94.2 0.13 2.9E-06 47.0 6.6 51 3-53 226-276 (466)
169 COG1231 Monoamine oxidase [Ami 94.2 0.11 2.3E-06 46.8 5.6 43 5-48 216-259 (450)
170 COG1252 Ndh NADH dehydrogenase 94.1 0.11 2.4E-06 46.4 5.7 51 4-58 218-269 (405)
171 PRK05675 sdhA succinate dehydr 94.0 0.16 3.5E-06 47.8 6.8 51 2-52 133-190 (570)
172 PRK06475 salicylate hydroxylas 93.9 0.18 4E-06 45.0 6.7 57 3-60 115-175 (400)
173 PRK06263 sdhA succinate dehydr 93.9 0.13 2.9E-06 48.0 6.0 50 2-51 141-197 (543)
174 PF01134 GIDA: Glucose inhibit 93.8 0.18 3.8E-06 45.0 6.4 45 4-49 104-150 (392)
175 PLN02487 zeta-carotene desatur 93.8 0.15 3.2E-06 47.9 6.1 50 2-51 302-360 (569)
176 PRK08243 4-hydroxybenzoate 3-m 93.7 0.18 3.9E-06 45.0 6.4 58 2-60 110-171 (392)
177 TIGR03169 Nterm_to_SelD pyridi 93.7 0.22 4.7E-06 43.9 6.7 54 3-60 199-252 (364)
178 PF00070 Pyr_redox: Pyridine n 93.6 0.12 2.5E-06 35.0 3.9 33 3-35 48-80 (80)
179 PRK12837 3-ketosteroid-delta-1 93.6 0.17 3.6E-06 47.0 6.1 44 8-51 187-235 (513)
180 PRK10262 thioredoxin reductase 93.5 0.26 5.5E-06 42.6 6.8 48 3-52 71-118 (321)
181 PLN00128 Succinate dehydrogena 93.3 0.25 5.3E-06 47.2 6.8 51 2-52 194-251 (635)
182 PRK08958 sdhA succinate dehydr 93.2 0.26 5.6E-06 46.6 6.8 51 2-52 150-207 (588)
183 TIGR03385 CoA_CoA_reduc CoA-di 93.2 0.3 6.4E-06 44.1 6.9 46 6-51 55-103 (427)
184 PRK09564 coenzyme A disulfide 93.1 0.35 7.5E-06 43.8 7.3 49 3-51 64-115 (444)
185 PLN02568 polyamine oxidase 93.1 0.25 5.5E-06 46.1 6.5 43 9-51 254-296 (539)
186 PRK09231 fumarate reductase fl 93.1 0.26 5.5E-06 46.6 6.5 49 4-52 142-197 (582)
187 PTZ00318 NADH dehydrogenase-li 93.1 0.26 5.6E-06 44.5 6.4 54 3-60 236-289 (424)
188 PRK07818 dihydrolipoamide dehy 93.0 0.27 5.9E-06 44.9 6.6 50 3-52 221-274 (466)
189 PRK07846 mycothione reductase; 93.0 0.27 5.9E-06 44.8 6.5 47 6-52 217-263 (451)
190 PRK04965 NADH:flavorubredoxin 93.0 0.3 6.4E-06 43.3 6.5 44 5-51 68-111 (377)
191 PRK07538 hypothetical protein; 92.9 0.23 5.1E-06 44.5 5.8 56 3-59 110-172 (413)
192 PRK06370 mercuric reductase; V 92.8 0.33 7.2E-06 44.3 6.8 50 3-52 220-272 (463)
193 PLN02529 lysine-specific histo 92.8 0.24 5.2E-06 47.9 5.9 42 8-50 365-406 (738)
194 PRK07208 hypothetical protein; 92.8 0.21 4.6E-06 45.7 5.5 50 2-51 225-280 (479)
195 TIGR03169 Nterm_to_SelD pyridi 92.7 0.22 4.8E-06 43.8 5.2 46 4-52 63-108 (364)
196 TIGR01423 trypano_reduc trypan 92.6 0.33 7.1E-06 44.8 6.5 50 3-52 239-289 (486)
197 PRK06069 sdhA succinate dehydr 92.6 0.31 6.8E-06 45.9 6.4 49 3-51 145-200 (577)
198 PF12831 FAD_oxidored: FAD dep 92.6 0.035 7.6E-07 50.3 0.0 57 3-61 98-158 (428)
199 TIGR03385 CoA_CoA_reduc CoA-di 92.5 0.46 9.9E-06 42.9 7.1 56 3-60 187-243 (427)
200 TIGR02061 aprA adenosine phosp 92.4 0.33 7.1E-06 46.1 6.2 49 4-52 135-192 (614)
201 PTZ00052 thioredoxin reductase 92.4 0.38 8.3E-06 44.5 6.6 50 3-52 230-279 (499)
202 TIGR03452 mycothione_red mycot 92.3 0.5 1.1E-05 43.1 7.2 47 6-52 220-266 (452)
203 TIGR02374 nitri_red_nirB nitri 92.3 0.36 7.7E-06 47.3 6.6 46 4-51 63-108 (785)
204 TIGR01421 gluta_reduc_1 glutat 92.3 0.37 8E-06 43.9 6.3 51 3-53 215-267 (450)
205 PRK12834 putative FAD-binding 92.2 0.43 9.4E-06 44.7 6.8 46 7-52 164-228 (549)
206 TIGR02053 MerA mercuric reduct 92.2 0.36 7.8E-06 44.1 6.2 50 3-52 215-267 (463)
207 PRK07803 sdhA succinate dehydr 92.1 0.39 8.5E-06 45.7 6.4 42 10-51 166-213 (626)
208 PRK06912 acoL dihydrolipoamide 92.1 0.49 1.1E-05 43.2 6.9 50 3-52 219-269 (458)
209 PRK06327 dihydrolipoamide dehy 92.1 0.4 8.8E-06 44.0 6.3 50 3-52 232-285 (475)
210 PRK13977 myosin-cross-reactive 92.0 0.29 6.4E-06 45.7 5.3 53 1-53 232-295 (576)
211 PRK07057 sdhA succinate dehydr 91.9 0.49 1.1E-05 44.7 6.8 51 2-52 155-212 (591)
212 TIGR02374 nitri_red_nirB nitri 91.9 0.45 9.8E-06 46.6 6.7 58 3-60 190-248 (785)
213 TIGR01176 fum_red_Fp fumarate 91.7 0.51 1.1E-05 44.6 6.7 49 4-52 141-196 (580)
214 COG1249 Lpd Pyruvate/2-oxoglut 91.6 0.48 1E-05 43.3 6.2 48 3-50 222-271 (454)
215 PRK09754 phenylpropionate diox 91.5 0.53 1.2E-05 42.0 6.4 46 5-52 68-113 (396)
216 TIGR01811 sdhA_Bsu succinate d 91.5 0.5 1.1E-05 44.8 6.4 44 8-51 146-196 (603)
217 PRK14989 nitrite reductase sub 91.5 0.63 1.4E-05 45.9 7.3 58 3-60 195-255 (847)
218 PRK13512 coenzyme A disulfide 91.4 0.59 1.3E-05 42.4 6.6 46 6-51 69-117 (438)
219 COG2072 TrkA Predicted flavopr 91.1 0.35 7.6E-06 44.0 4.8 42 12-53 101-146 (443)
220 PF13434 K_oxygenase: L-lysine 91.1 0.19 4E-06 44.2 2.9 46 4-49 104-157 (341)
221 PRK06115 dihydrolipoamide dehy 91.0 0.68 1.5E-05 42.4 6.7 50 3-52 223-277 (466)
222 PRK14989 nitrite reductase sub 91.0 0.62 1.3E-05 46.0 6.6 46 4-51 68-113 (847)
223 TIGR01438 TGR thioredoxin and 90.8 0.66 1.4E-05 42.7 6.4 50 3-52 228-280 (484)
224 COG1232 HemY Protoporphyrinoge 90.7 0.52 1.1E-05 42.8 5.4 52 6-59 223-274 (444)
225 PF00743 FMO-like: Flavin-bind 90.7 0.47 1E-05 44.3 5.3 48 5-52 94-151 (531)
226 COG1635 THI4 Ribulose 1,5-bisp 90.6 0.93 2E-05 37.2 6.1 54 2-55 116-182 (262)
227 PLN03000 amine oxidase 90.5 0.49 1.1E-05 46.5 5.4 41 10-51 391-431 (881)
228 PRK05976 dihydrolipoamide dehy 90.5 0.76 1.7E-05 42.1 6.5 50 3-52 229-282 (472)
229 PRK07395 L-aspartate oxidase; 90.4 0.45 9.9E-06 44.6 5.0 49 3-51 142-197 (553)
230 TIGR02360 pbenz_hydroxyl 4-hyd 90.4 0.69 1.5E-05 41.2 6.0 57 2-59 110-170 (390)
231 PLN02576 protoporphyrinogen ox 90.3 0.71 1.5E-05 42.4 6.2 44 6-49 247-295 (496)
232 PF07992 Pyr_redox_2: Pyridine 90.2 0.32 6.8E-06 38.6 3.3 48 4-51 67-122 (201)
233 PF07156 Prenylcys_lyase: Pren 89.9 6 0.00013 35.1 11.3 71 171-247 279-351 (368)
234 PLN02661 Putative thiazole syn 88.9 1.3 2.9E-05 39.0 6.4 46 7-52 185-245 (357)
235 PRK07845 flavoprotein disulfid 88.9 1.2 2.6E-05 40.8 6.4 48 3-51 100-151 (466)
236 PLN02815 L-aspartate oxidase 88.7 0.82 1.8E-05 43.3 5.3 50 3-52 163-223 (594)
237 PRK09077 L-aspartate oxidase; 88.5 1.2 2.6E-05 41.6 6.3 50 3-52 146-208 (536)
238 PTZ00306 NADH-dependent fumara 88.1 1.3 2.8E-05 45.4 6.6 45 8-52 560-621 (1167)
239 COG3075 GlpB Anaerobic glycero 87.9 0.73 1.6E-05 40.0 4.0 50 2-51 265-317 (421)
240 PRK13512 coenzyme A disulfide 87.9 1.3 2.8E-05 40.2 5.9 54 3-60 197-251 (438)
241 KOG1346|consensus 87.9 0.45 9.7E-06 42.6 2.8 58 3-60 401-459 (659)
242 PTZ00058 glutathione reductase 87.6 1.9 4.1E-05 40.6 6.9 50 3-52 286-337 (561)
243 PLN02976 amine oxidase 87.5 1.2 2.6E-05 46.2 5.8 42 9-50 945-996 (1713)
244 PLN02546 glutathione reductase 87.3 1.8 3.8E-05 40.7 6.6 50 3-53 301-352 (558)
245 COG2303 BetA Choline dehydroge 87.0 2.2 4.7E-05 40.0 7.0 55 6-60 214-276 (542)
246 TIGR01292 TRX_reduct thioredox 86.8 1.8 4E-05 36.4 6.0 50 3-52 184-239 (300)
247 PLN02785 Protein HOTHEAD 86.7 2.5 5.4E-05 40.0 7.2 57 4-60 229-300 (587)
248 PLN02328 lysine-specific histo 86.5 1.4 3E-05 43.1 5.6 40 11-51 448-487 (808)
249 PRK11749 dihydropyrimidine deh 86.3 2 4.4E-05 39.2 6.3 50 3-52 319-388 (457)
250 PTZ00318 NADH dehydrogenase-li 86.0 1.8 3.8E-05 39.2 5.7 46 5-51 72-125 (424)
251 PRK12810 gltD glutamate syntha 86.0 2.3 4.9E-05 39.1 6.5 58 3-60 337-411 (471)
252 TIGR02462 pyranose_ox pyranose 86.0 1.9 4.1E-05 40.4 6.0 54 7-60 226-289 (544)
253 COG3380 Predicted NAD/FAD-depe 85.6 0.68 1.5E-05 39.2 2.5 48 7-54 115-164 (331)
254 PRK08294 phenol 2-monooxygenas 85.3 4.6 9.9E-05 38.7 8.3 58 2-60 148-218 (634)
255 PF01946 Thi4: Thi4 family; PD 85.2 2.5 5.4E-05 34.6 5.6 51 2-52 103-166 (230)
256 KOG1399|consensus 84.9 1.9 4.2E-05 39.3 5.3 47 5-51 100-153 (448)
257 PLN02985 squalene monooxygenas 84.7 3.5 7.5E-05 38.4 7.1 56 3-60 155-216 (514)
258 PRK12770 putative glutamate sy 83.4 2.6 5.7E-05 36.9 5.5 51 3-53 218-288 (352)
259 COG3486 IucD Lysine/ornithine 82.7 2 4.4E-05 38.3 4.4 44 7-50 290-339 (436)
260 PRK10262 thioredoxin reductase 82.6 2.4 5.2E-05 36.5 4.9 51 4-54 194-251 (321)
261 PRK05976 dihydrolipoamide dehy 82.4 2.8 6.2E-05 38.3 5.5 46 5-51 102-154 (472)
262 PRK08641 sdhA succinate dehydr 81.9 3.6 7.8E-05 39.0 6.1 43 10-52 152-201 (589)
263 KOG2404|consensus 81.4 1.9 4.1E-05 37.5 3.6 43 9-51 159-206 (477)
264 TIGR03452 mycothione_red mycot 81.2 2.2 4.8E-05 38.9 4.3 40 7-51 104-143 (452)
265 PRK06467 dihydrolipoamide dehy 80.8 3.7 8E-05 37.7 5.6 48 4-52 224-275 (471)
266 PRK06467 dihydrolipoamide dehy 80.2 3.7 7.9E-05 37.7 5.4 44 5-51 103-148 (471)
267 KOG1336|consensus 79.6 3.6 7.8E-05 37.4 4.9 49 3-51 263-313 (478)
268 PRK13800 putative oxidoreducta 77.9 5.7 0.00012 39.6 6.3 44 9-52 157-206 (897)
269 PRK05249 soluble pyridine nucl 77.7 5.8 0.00013 36.1 5.9 44 4-50 103-148 (461)
270 TIGR01316 gltA glutamate synth 77.4 8.1 0.00018 35.2 6.7 51 3-53 317-389 (449)
271 TIGR03140 AhpF alkyl hydropero 77.3 5.4 0.00012 37.1 5.7 49 4-52 396-451 (515)
272 PRK06292 dihydrolipoamide dehy 77.1 7.1 0.00015 35.5 6.3 47 4-51 219-268 (460)
273 COG1251 NirB NAD(P)H-nitrite r 76.8 5.2 0.00011 38.5 5.3 46 5-52 69-114 (793)
274 TIGR01424 gluta_reduc_2 glutat 76.6 5.2 0.00011 36.4 5.3 44 4-51 99-142 (446)
275 KOG1335|consensus 76.3 7 0.00015 34.9 5.6 46 4-49 261-312 (506)
276 PRK14694 putative mercuric red 74.9 8.3 0.00018 35.3 6.1 40 9-51 111-152 (468)
277 PTZ00153 lipoamide dehydrogena 74.7 7.6 0.00016 37.4 6.0 47 6-52 365-428 (659)
278 PRK06327 dihydrolipoamide dehy 74.2 6.6 0.00014 36.0 5.3 46 5-51 110-157 (475)
279 PLN02507 glutathione reductase 74.1 9.1 0.0002 35.5 6.2 44 5-51 134-179 (499)
280 TIGR01318 gltD_gamma_fam gluta 73.7 11 0.00024 34.5 6.7 50 3-52 328-399 (467)
281 TIGR01372 soxA sarcosine oxida 72.5 12 0.00026 37.8 7.1 58 3-60 359-421 (985)
282 COG0029 NadB Aspartate oxidase 71.9 4.8 0.0001 36.9 3.7 51 3-53 141-198 (518)
283 COG0446 HcaD Uncharacterized N 71.8 12 0.00027 32.8 6.4 57 2-58 185-245 (415)
284 PRK07846 mycothione reductase; 71.6 7.5 0.00016 35.5 5.0 42 5-51 99-140 (451)
285 PRK12814 putative NADPH-depend 71.2 11 0.00023 36.3 6.1 50 3-52 369-438 (652)
286 PRK06416 dihydrolipoamide dehy 70.5 9.1 0.0002 34.9 5.3 45 4-51 101-146 (462)
287 PRK13984 putative oxidoreducta 70.1 11 0.00023 35.8 5.8 48 4-51 471-538 (604)
288 COG0579 Predicted dehydrogenas 66.9 2.7 5.9E-05 38.1 1.1 79 169-247 330-408 (429)
289 COG4529 Uncharacterized protei 66.8 8.1 0.00018 35.3 4.0 41 11-51 122-164 (474)
290 PRK08010 pyridine nucleotide-d 66.3 17 0.00037 32.9 6.2 41 8-51 90-131 (441)
291 PRK09853 putative selenate red 65.6 15 0.00033 37.1 6.0 58 3-60 715-789 (1019)
292 PRK12831 putative oxidoreducta 65.4 19 0.00041 33.0 6.3 51 3-53 326-398 (464)
293 COG2907 Predicted NAD/FAD-bind 65.4 11 0.00024 33.3 4.4 52 6-59 228-279 (447)
294 PRK12769 putative oxidoreducta 64.9 23 0.00049 34.1 7.0 50 3-52 514-585 (654)
295 COG0445 GidA Flavin-dependent 64.8 3.7 8.1E-05 38.2 1.5 43 8-51 114-158 (621)
296 PRK12771 putative glutamate sy 64.6 18 0.00038 34.1 6.1 50 3-52 313-381 (564)
297 TIGR01350 lipoamide_DH dihydro 63.5 16 0.00034 33.2 5.4 44 5-51 99-143 (461)
298 PRK06116 glutathione reductase 62.9 17 0.00036 33.0 5.5 41 5-51 103-143 (450)
299 TIGR01421 gluta_reduc_1 glutat 62.3 15 0.00032 33.5 5.0 42 4-51 100-141 (450)
300 PTZ00367 squalene epoxidase; P 61.8 18 0.00039 34.2 5.5 52 7-60 146-227 (567)
301 PRK12809 putative oxidoreducta 61.0 26 0.00055 33.6 6.5 49 3-51 497-567 (639)
302 KOG1336|consensus 60.9 19 0.0004 33.0 5.1 43 5-49 137-179 (478)
303 PRK06115 dihydrolipoamide dehy 60.9 22 0.00048 32.5 5.9 43 6-51 104-148 (466)
304 PRK15317 alkyl hydroperoxide r 59.1 23 0.00049 33.0 5.7 44 8-51 400-449 (517)
305 KOG0029|consensus 58.5 18 0.00039 33.6 4.9 42 9-50 228-270 (501)
306 PRK06912 acoL dihydrolipoamide 58.4 26 0.00056 31.9 5.9 44 5-51 100-144 (458)
307 PRK08255 salicylyl-CoA 5-hydro 58.4 6.8 0.00015 38.4 2.2 40 1-52 103-142 (765)
308 PRK09897 hypothetical protein; 58.4 22 0.00048 33.3 5.5 32 20-52 417-448 (534)
309 PTZ00058 glutathione reductase 58.3 18 0.00039 34.1 4.9 48 4-51 144-214 (561)
310 PRK12770 putative glutamate sy 57.6 7 0.00015 34.2 2.0 49 3-52 76-131 (352)
311 KOG2415|consensus 57.6 15 0.00032 33.3 3.9 60 1-60 189-268 (621)
312 COG3486 IucD Lysine/ornithine 56.6 17 0.00037 32.6 4.1 44 5-49 108-155 (436)
313 PF00996 GDI: GDP dissociation 56.4 29 0.00062 31.7 5.7 44 2-46 239-284 (438)
314 PRK06370 mercuric reductase; V 56.3 20 0.00044 32.6 4.8 41 5-51 104-145 (463)
315 PRK14727 putative mercuric red 56.2 28 0.00061 32.0 5.7 40 9-51 121-162 (479)
316 COG1252 Ndh NADH dehydrogenase 55.8 19 0.00041 32.5 4.4 47 5-54 67-114 (405)
317 PRK12778 putative bifunctional 55.6 36 0.00078 33.3 6.6 51 3-53 616-688 (752)
318 TIGR03315 Se_ygfK putative sel 55.5 31 0.00068 35.0 6.2 56 3-60 713-786 (1012)
319 COG3634 AhpF Alkyl hydroperoxi 55.1 12 0.00025 33.2 2.8 51 3-53 274-327 (520)
320 KOG0685|consensus 55.1 14 0.00031 33.8 3.4 41 10-50 244-285 (498)
321 COG0446 HcaD Uncharacterized N 53.2 27 0.00058 30.7 5.0 45 6-53 64-108 (415)
322 COG1251 NirB NAD(P)H-nitrite r 53.0 11 0.00024 36.3 2.6 60 2-61 194-254 (793)
323 PRK07251 pyridine nucleotide-d 52.6 37 0.0008 30.7 5.9 44 5-51 86-130 (438)
324 KOG0405|consensus 52.2 27 0.00058 31.0 4.5 47 3-50 238-286 (478)
325 TIGR01438 TGR thioredoxin and 49.5 38 0.00081 31.3 5.5 44 4-50 109-154 (484)
326 PRK13748 putative mercuric red 49.4 51 0.0011 30.9 6.4 40 9-51 203-244 (561)
327 KOG1346|consensus 49.3 26 0.00057 31.8 4.1 48 5-54 267-314 (659)
328 PLN02546 glutathione reductase 48.8 30 0.00066 32.6 4.8 42 4-51 187-228 (558)
329 TIGR02053 MerA mercuric reduct 46.7 34 0.00073 31.2 4.7 42 5-51 98-140 (463)
330 PRK12779 putative bifunctional 46.0 52 0.0011 33.3 6.1 52 3-54 492-565 (944)
331 COG1249 Lpd Pyruvate/2-oxoglut 41.9 49 0.0011 30.4 4.9 46 4-52 103-148 (454)
332 PRK12779 putative bifunctional 41.0 24 0.00052 35.5 3.0 42 3-52 364-405 (944)
333 TIGR01372 soxA sarcosine oxida 40.5 61 0.0013 32.9 5.7 47 4-51 224-286 (985)
334 KOG3851|consensus 40.4 13 0.00029 32.4 0.9 34 17-52 113-146 (446)
335 PRK11749 dihydropyrimidine deh 40.3 15 0.00033 33.5 1.4 40 3-51 198-237 (457)
336 TIGR01316 gltA glutamate synth 40.1 13 0.00028 33.9 0.8 41 3-52 191-231 (449)
337 TIGR01423 trypano_reduc trypan 39.3 62 0.0013 29.9 5.2 41 8-51 117-163 (486)
338 PRK12831 putative oxidoreducta 38.7 16 0.00036 33.4 1.3 41 3-51 199-240 (464)
339 PRK07818 dihydrolipoamide dehy 38.5 53 0.0012 29.9 4.7 28 24-51 118-147 (466)
340 COG1148 HdrA Heterodisulfide r 37.5 33 0.00071 31.8 2.9 54 7-61 427-490 (622)
341 COG1053 SdhA Succinate dehydro 37.4 27 0.00059 32.9 2.6 49 3-51 146-202 (562)
342 PRK12775 putative trifunctiona 35.8 98 0.0021 31.6 6.3 51 3-53 617-688 (1006)
343 PTZ00052 thioredoxin reductase 34.5 86 0.0019 29.0 5.4 25 27-51 131-156 (499)
344 KOG1335|consensus 34.5 88 0.0019 28.3 5.0 44 4-50 139-184 (506)
345 KOG2614|consensus 33.8 35 0.00077 30.7 2.5 43 17-60 129-171 (420)
346 COG3573 Predicted oxidoreducta 32.4 81 0.0017 28.0 4.4 46 5-50 163-227 (552)
347 PRK09853 putative selenate red 32.3 66 0.0014 32.7 4.4 40 3-52 597-636 (1019)
348 PF06100 Strep_67kDa_ant: Stre 32.0 97 0.0021 28.8 5.1 24 1-24 213-236 (500)
349 PRK06567 putative bifunctional 30.6 1.2E+02 0.0025 31.0 5.7 49 3-51 648-728 (1028)
350 PRK12778 putative bifunctional 30.6 25 0.00055 34.3 1.3 41 3-51 489-529 (752)
351 PRK06292 dihydrolipoamide dehy 27.2 1.3E+02 0.0029 27.2 5.3 39 6-50 103-141 (460)
352 KOG1238|consensus 27.1 1.7E+02 0.0037 28.0 5.9 52 9-60 268-328 (623)
353 PLN02172 flavin-containing mon 25.7 73 0.0016 29.2 3.3 36 13-51 253-288 (461)
354 PRK12775 putative trifunctiona 25.0 39 0.00084 34.4 1.4 43 3-52 488-530 (1006)
355 TIGR01318 gltD_gamma_fam gluta 23.4 40 0.00087 30.9 1.1 41 3-52 199-239 (467)
356 KOG1439|consensus 22.4 1.9E+02 0.0041 26.2 5.0 56 2-59 239-296 (440)
357 PRK13984 putative oxidoreducta 22.3 40 0.00086 32.0 0.9 40 3-51 341-380 (604)
358 COG1237 Metal-dependent hydrol 22.1 1.3E+02 0.0027 25.4 3.7 27 212-245 165-191 (259)
359 TIGR01317 GOGAT_sm_gam glutama 21.6 47 0.001 30.7 1.2 40 2-50 200-239 (485)
360 TIGR03143 AhpF_homolog putativ 20.6 2.9E+02 0.0063 26.0 6.2 47 7-53 191-248 (555)
No 1
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=100.00 E-value=4.6e-34 Score=254.19 Aligned_cols=238 Identities=51% Similarity=0.809 Sum_probs=201.1
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ 81 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~ 81 (252)
.+.++++|++++++++|++++.++++|.|.|++| ++.|+.||+|+|.|+..+++++|+..++++.|+||+++.+.+...
T Consensus 156 ~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~~~~~v~p~rGq~~~~~~~~~ 234 (393)
T PRK11728 156 AELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLEPDFRIVPFRGEYYRLAPEKN 234 (393)
T ss_pred HHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCCCCCceEEeeeEEEEeccccc
Confidence 4667889999999999999998888888999888 899999999999999999999997556889999999999975433
Q ss_pred ccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHHHH
Q psy3952 82 HLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMI 161 (252)
Q Consensus 82 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (252)
..++..+|++|++..++.++|++|+.+|++++|+++.....+++|.....+..++.+++...++|..+.+++.+.++.+.
T Consensus 235 ~~~~~~v~~~p~~~~~~~g~~~~p~~~G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (393)
T PRK11728 235 QLVNHLIYPVPDPAFPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSLRDLLEILTYPGFWKLAQKHWRSGLGEMK 314 (393)
T ss_pred cccCCceecCCCCCCCcceEEeecCCCCCEEECCCcceehhhcCccccCCCHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 45677889999877667889999999999999997765544456654323344444555556667666667888888887
Q ss_pred hhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEecCCeEEEeccCCccccchHHHHHHHHHHH
Q psy3952 162 MSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILNEL 240 (252)
Q Consensus 162 ~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~~~~~~~~G~~~~G~t~a~~~g~~va~~i 240 (252)
.+.+++.+++.+++++|.|+..++.+.|+|+||+.++||+.|..||+|...++++++.|..|+|+|.||++|+.|++++
T Consensus 315 ~~~~~~~~~~~a~~~~P~l~~~~i~~~~~G~Rp~~~~~d~~~~~d~~i~~~~~~~~~~~~~spg~t~s~~ia~~v~~~~ 393 (393)
T PRK11728 315 NSLSKSGYLRLVQKYCPSLTLSDLQPYPAGVRAQAVSRDGKLVDDFLFVETPRSLHVCNAPSPAATSSLPIGEHIVSKV 393 (393)
T ss_pred hhhhHHHHHHHHHHhCCCCCHHHcccCCCceeeeeeCCCCCccCceEEecCCCEEEEcCCCCchHHccHHHHHHHHhhC
Confidence 7788889999999999999999999999999997667999999999998889999999999999999999999999863
No 2
>KOG2665|consensus
Probab=99.96 E-value=1.9e-28 Score=203.13 Aligned_cols=240 Identities=55% Similarity=0.925 Sum_probs=214.1
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCe-----EEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEe
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPES-----VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL 76 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~-----~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~ 76 (252)
.+..+..|.++.++-++.++...... .+|....+++++++.||-|||..++.+++..|...+..+.|.+|.++.+
T Consensus 203 ~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~dPriVpfrG~ylll 282 (453)
T KOG2665|consen 203 GEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCELDPRIVPFRGEYLLL 282 (453)
T ss_pred HHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCCCCCeeeeccchhhhc
Confidence 56678899999999999999876542 3455566778999999999999999999999987788899999999999
Q ss_pred CCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhh
Q psy3952 77 NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYG 156 (252)
Q Consensus 77 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (252)
.++....+++.+||+|++++++.|+|+.|+.+|.+++|+++.....+++|.+.++++.++.+.+.++++-++.++++...
T Consensus 283 ~~ek~h~vk~niyPvpd~RFpflGvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg~~k~~~k~f~yg 362 (453)
T KOG2665|consen 283 KPEKLHLVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSGDTKLASKKFDYG 362 (453)
T ss_pred ChHHhccccCceeeCCCCCCccccccccCcCCCceecCCCceEEEEEEeeccccccccchhhheecCchHHHHHhhcCcc
Confidence 87666778899999999999999999999999999999999888888899888888888888888999999999999999
Q ss_pred hHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe-----cCCeEEEeccCCccccchHH
Q psy3952 157 SKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-----AGRTLHCRNAPSPAATSSLA 231 (252)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~-----~~~~~~~~G~~~~G~t~a~~ 231 (252)
+..+.+.+|...-++++++|+|.|++.+|.+..+|+|.+..+-||..++||+++. .|++.++.+..|+|.|.|.+
T Consensus 363 v~e~~k~~f~~aqvk~lqkyiPdlk~~di~rGpaGvRaqald~~gnlv~DFVfd~g~g~~~p~llh~rnapSPgaTSSlA 442 (453)
T KOG2665|consen 363 VNEMYKEKFIAAQVKELQKYIPDLKDSDIERGPAGVRAQALDGDGNLVDDFVFDGGEGHLVPRLLHVRNAPSPGATSSLA 442 (453)
T ss_pred cchHhhhhhhhhhhHHHHHhCccccccccccCcccccchhccCCCCCchheEEecCccccccceEEecCCCCccchhhHH
Confidence 9988876666666799999999999999999999999888888888889999976 38999999999999999999
Q ss_pred HHHHHHHHHH
Q psy3952 232 IAKHILNELR 241 (252)
Q Consensus 232 ~g~~va~~i~ 241 (252)
+|+++|+.+.
T Consensus 443 Ia~mIa~k~~ 452 (453)
T KOG2665|consen 443 IAKMIADKFL 452 (453)
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 3
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.95 E-value=3.5e-27 Score=213.99 Aligned_cols=233 Identities=21% Similarity=0.343 Sum_probs=184.6
Q ss_pred ChhHHHh----CC--cEEEeCceeEEEEEc-CCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEE
Q psy3952 1 MGEEFCE----LG--GEIRLNQQVESFKEN-PESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEY 73 (252)
Q Consensus 1 l~~~a~~----~G--~~i~~~~~V~~i~~~-~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~ 73 (252)
|++.|++ +| ++|+++|+|++|+++ ++.|.|+|++| ++.|++||||||+||..|++++|+..++++.|++|++
T Consensus 217 l~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~Gi~~~~~i~Pv~G~~ 295 (497)
T PTZ00383 217 FVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMGYGLEYSCLPVAGSF 295 (497)
T ss_pred HHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhCCCCCCCEEecCceE
Confidence 3567777 78 789999999999987 45688999999 8999999999999999999999987789999999999
Q ss_pred EEeCCCccccccceeecCCCCCCCCceeEEEEec--CCcEEEcccceecccccCcccccc-------chhHH------hh
Q psy3952 74 LLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRM--DGSVWLGPNAVLAFKKEGYRWRDF-------SVREL------FS 138 (252)
Q Consensus 74 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~g~~~iG~~~~~~~~~~~~~~~~~-------~~~~~------~~ 138 (252)
++++. ..++.||++|++..||.++|+.++. +|.+++||++.+.+.+++|...++ +++ . ++
T Consensus 296 ~~~~~----~~~~kVY~v~~p~~Pf~~vH~d~~i~~~g~~~~GP~A~~~~~~e~y~~~~~~d~~~~~~~~-~~~~~~~~~ 370 (497)
T PTZ00383 296 YFSGN----ILNGKVYTVQNPALPFAAVHGDPDIIAKGKTRFGPTALPLPLLERYNMSSLPDFLKVWNPD-LNLLAVYFD 370 (497)
T ss_pred EEcCh----hhcCceecCCCCCCCCcCccCCCccCCCCeEEEccCcccchHHhCCCCCchHHHHHhcCCC-hhHHHhHHH
Confidence 88852 5678999999999999999999984 889999999988877777754332 221 2 34
Q ss_pred hhcCCCccccchhhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCcee--cCCcceeEeecCCCC-cc-cceEEEecCC
Q psy3952 139 TLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQR--GPSGVRAQALSSSGD-LV-DDFVFHSAGR 214 (252)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~--~w~G~rp~~~~~d~~-p~-~~~~i~~~~~ 214 (252)
.+.++++|+++.++..+++ .+++++.+++.+++++|.++.+++.. .++|+|++.++.+.+ .. ...+|...+|
T Consensus 371 ~~~~~~~~~~~~~~~~~e~----~~~~k~~~~~~~~~~~P~~~~~d~~~~~~~~GvR~Q~i~~~~~~L~~g~~~i~~~~~ 446 (497)
T PTZ00383 371 LFKDSTMRKYVLRNFLFEV----PLLNKYLFLKDARKIVPSLTRKDLRYCVGYGGVRPQLIDKVSKKLLLGEGKIDPGKG 446 (497)
T ss_pred HhhChhHHHHHHHHHHHHH----HhcCHHHHHHHHHHhCCCCCHHHeeeccCCCceEEEEEECCCCeEecCceEEecCCC
Confidence 4667788888777666544 35678999999999999999999986 466999999975532 21 1223444578
Q ss_pred eEEEeccCCccccchHHHHHHHHHHHHhhc
Q psy3952 215 TLHCRNAPSPAATSSLAIAKHILNELRREF 244 (252)
Q Consensus 215 ~~~~~G~~~~G~t~a~~~g~~va~~i~~~~ 244 (252)
.+...| .|||-|+|.+.|+.=+..|++.+
T Consensus 447 ~i~~~~-~spgast~l~~~~~d~~~~~~~~ 475 (497)
T PTZ00383 447 IIFNIT-PSPGATTCLGNAESDMREICERL 475 (497)
T ss_pred cEEecc-CCCcHHHHHHHHHHHHHHHHHHh
Confidence 877554 68999999999986555555543
No 4
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.94 E-value=7.6e-26 Score=204.80 Aligned_cols=233 Identities=20% Similarity=0.321 Sum_probs=181.3
Q ss_pred hhHHHh-CCcEEEeCceeEEEEEc-CCeEEEE---eCCCc--EEEcCEEEEcCCCChHHHHHHcCCCC--CCceeeeeeE
Q psy3952 2 GEEFCE-LGGEIRLNQQVESFKEN-PESVTIS---TKQGD--HLESSYALVCAGLQADEMALKSGCSL--EPAIVPFRGE 72 (252)
Q Consensus 2 ~~~a~~-~G~~i~~~~~V~~i~~~-~~~~~V~---t~~g~--~i~A~~VV~AaG~ws~~l~~~~g~~~--~~~~~p~~g~ 72 (252)
++.+.+ .|++++++++|++|++. +++|+|. |+.|. +++||+||||||+|++.|++++|++. .+++.|++|+
T Consensus 191 ~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~~~~~~~i~PvkGq 270 (497)
T PRK13339 191 AKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIPESKHLGGFPISGQ 270 (497)
T ss_pred HHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHcCCCccCCCceEeeeEE
Confidence 455644 59999999999999987 6778875 55452 59999999999999999999999853 3789999999
Q ss_pred EEEeCCCcccccc---ceeecCCCCCCCCcee-EE-EEecCCc--EEEcccceecccccCccccccchhHHhhhhcCCCc
Q psy3952 73 YLLLNPAKQHLVR---GNIYPVPDPNFPFLGV-HF-TPRMDGS--VWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGF 145 (252)
Q Consensus 73 ~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~-~~-~~~~~g~--~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (252)
++.++++ +.+. ..||++|++..|+.++ |. .+..+|. +++||++.+.. .+. ...+..++++++...++
T Consensus 271 ~l~l~~~--~~v~~h~~~VY~v~~~~~P~~~VPhlDtr~i~G~~~v~~GP~A~~~~---~~~-r~~~~~d~~~~l~~~~~ 344 (497)
T PRK13339 271 FLRCTNP--EVVKQHQAKVYSKEPVGTPPMTVPHLDTRYIDGKRSLLFGPYAGFGP---KFL-KHGSNLDLFKSVKPYNI 344 (497)
T ss_pred EEEecCH--HHhhhcCceEeCCCCCCCCCCcCCCCCCcEEcCceeEEECCCccchH---HHh-ccCCHHHHHHHhCccCc
Confidence 9999763 3333 4699998876655444 55 4556785 89999988642 121 12345566677776666
Q ss_pred ---cccchhhh---hhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEE------EecC
Q psy3952 146 ---WRLGLKYT---RYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVF------HSAG 213 (252)
Q Consensus 146 ---~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i------~~~~ 213 (252)
|.+..++. ...+.++..+ +..+++.+++++|.++.+++....+|+|++.++.|++.++||++ ...+
T Consensus 345 ~~~~~~~~~~~~l~~~~~~e~~~~--k~~~~~~~~~~~P~~~~~D~~~~~aGiR~Q~i~~~~~~~~dfl~~g~~~i~~~~ 422 (497)
T PRK13339 345 TTMLAVAVKNMPLIKYSIDQVMQT--KEGRMNHLRTFYPEARAEDWRLYTAGKRVQVIKDTPEHGKGFIQFGTEVVNSQD 422 (497)
T ss_pred HHHHHHHHhccHHHHHHHHHHhhC--HHHHHHHHHHhCCCCCHHHeeEcCCceEEEEEeCCCCccCCEEEecceeeecCC
Confidence 66666664 5566666543 77889999999999999999999999999999999988889954 3568
Q ss_pred CeEEEeccCCccccchHHHHHHHHHHHHh
Q psy3952 214 RTLHCRNAPSPAATSSLAIAKHILNELRR 242 (252)
Q Consensus 214 ~~~~~~G~~~~G~t~a~~~g~~va~~i~~ 242 (252)
+.+++....|+|.|+|..+|+.|++.+-.
T Consensus 423 ~s~~~lna~SPgATssl~ia~~v~~~~f~ 451 (497)
T PRK13339 423 HSVIALLGESPGASTSVSVALEVLERNFP 451 (497)
T ss_pred CeEEEecCCCcHHHhhHHHHHHHHHHHhH
Confidence 98899999999999999999999997653
No 5
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.94 E-value=1.2e-25 Score=204.58 Aligned_cols=235 Identities=23% Similarity=0.345 Sum_probs=185.2
Q ss_pred ChhHHHhCC-cEEEeCceeEEEEEcCC-eEEEEe---CCCc--EEEcCEEEEcCCCChHHHHHHcCCC--CCCceeeeee
Q psy3952 1 MGEEFCELG-GEIRLNQQVESFKENPE-SVTIST---KQGD--HLESSYALVCAGLQADEMALKSGCS--LEPAIVPFRG 71 (252)
Q Consensus 1 l~~~a~~~G-~~i~~~~~V~~i~~~~~-~~~V~t---~~g~--~i~A~~VV~AaG~ws~~l~~~~g~~--~~~~~~p~~g 71 (252)
|++.++++| ++++++|+|++|++.++ .|.|.+ ..|. ++.|++||+|||+|+..|++++|++ ..+++.|++|
T Consensus 189 L~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~~~~~~i~PvrG 268 (494)
T PRK05257 189 LVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIPEAKGYGGFPVSG 268 (494)
T ss_pred HHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCCccCCCCeeeeeE
Confidence 356777876 89999999999998655 487654 3342 5999999999999999999999985 2468999999
Q ss_pred EEEEeCCCccccccce--eecCCCCCCCCcee-EE-EEecCCc--EEEcccceecccccCccccccchhHHhhhhcCCCc
Q psy3952 72 EYLLLNPAKQHLVRGN--IYPVPDPNFPFLGV-HF-TPRMDGS--VWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGF 145 (252)
Q Consensus 72 ~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~-~~-~~~~~g~--~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (252)
+++.++++. ...++. ||+++++..|+.++ |. .+..+|. +++||++.+... + ....+..++++++...++
T Consensus 269 q~l~~~~~~-~v~~~~~kvY~~~~~~~P~~~vPh~dtr~i~G~~~~~~GP~A~~~~~---~-~~~~~~~d~~~~~~~~~~ 343 (494)
T PRK05257 269 QFLVCENPE-VVAQHHAKVYGKASVGAPPMSVPHLDTRVIDGKRSLLFGPFAGFSTK---F-LKNGSLLDLFSSVRPSNL 343 (494)
T ss_pred EEEEcCCHH-HHhcCCeEEecCCCCCCCCCCCCCCCCcEECCceeEEECCCccccHH---h-ccCCCHHHHHHhcCcccc
Confidence 999998641 112333 89998765555444 44 4456785 999999886542 2 234456778888888899
Q ss_pred cccc---hhhh---hhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCC----CCcccce-EEEecCC
Q psy3952 146 WRLG---LKYT---RYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSS----GDLVDDF-VFHSAGR 214 (252)
Q Consensus 146 ~~~~---~~~~---~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d----~~p~~~~-~i~~~~~ 214 (252)
|.++ .++. ...+.++..+ +..+++.+++++|.++.+++....+|+|++.+++| |+.+.|+ ++...++
T Consensus 344 ~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~d~~~~~aG~R~Q~i~~~~~~~g~L~~~~~~i~~~~~ 421 (494)
T PRK05257 344 LPMLAVGLDNFDLTKYLISQVMLS--DEDRFEALREFYPNAKPEDWELIVAGQRVQIIKKDPKKGGVLQFGTEVVSSADG 421 (494)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhC--HHHHHHHHHHhCCCCCHHHceEcCCceEeEEEccCCCCCCEEECCcEEEecCCC
Confidence 9888 6664 5666666643 77889999999999999999999999999999888 8888895 8888899
Q ss_pred eEEEeccCCccccchHHHHHHHHHHHHh
Q psy3952 215 TLHCRNAPSPAATSSLAIAKHILNELRR 242 (252)
Q Consensus 215 ~~~~~G~~~~G~t~a~~~g~~va~~i~~ 242 (252)
.+++....|||.|+|..+|+.|++.+..
T Consensus 422 ~~~~l~~~SPgat~s~~i~~~v~~~~~~ 449 (494)
T PRK05257 422 SIAALLGASPGASTAVPIMLEVLEKCFP 449 (494)
T ss_pred eEEEEcCCCchHHHHHHHHHHHHHHhCH
Confidence 9999989999999999999999996653
No 6
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.94 E-value=1.8e-25 Score=203.07 Aligned_cols=233 Identities=24% Similarity=0.300 Sum_probs=173.8
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcC-CeEEEEe---CCC--cEEEcCEEEEcCCCChHHHHHHcCCC--CCCceeeeeeE
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENP-ESVTIST---KQG--DHLESSYALVCAGLQADEMALKSGCS--LEPAIVPFRGE 72 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~-~~~~V~t---~~g--~~i~A~~VV~AaG~ws~~l~~~~g~~--~~~~~~p~~g~ 72 (252)
|++.++++|++|+++++|++|++++ ++|.|.+ ..| .+++|++||||||+|+..|++++|++ ..+++.|++|+
T Consensus 184 L~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~~~~~~i~P~~Gq 263 (483)
T TIGR01320 184 LLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIPEVKGFAGFPVSGL 263 (483)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCCcCCCCceeeeeEE
Confidence 3567888999999999999999865 4677653 333 26999999999999999999999985 35789999999
Q ss_pred EEEeCCC-ccccccceeecCCCCCCCCcee-EE-EEecCCcEE--Ecccce--ecccccCccc---cccchhHHhhhh--
Q psy3952 73 YLLLNPA-KQHLVRGNIYPVPDPNFPFLGV-HF-TPRMDGSVW--LGPNAV--LAFKKEGYRW---RDFSVRELFSTL-- 140 (252)
Q Consensus 73 ~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~-~~-~~~~~g~~~--iG~~~~--~~~~~~~~~~---~~~~~~~~~~~~-- 140 (252)
++.++.+ .....+..||++|++..|+.++ |+ .+..+|... +||++. +...++++-. ..+.+.++..++
T Consensus 264 ~l~l~~~~~~~~~~~~IY~v~~p~~p~~~Vph~Dtr~i~G~~~~~~GP~A~~~~~~~reg~~~d~~~~~~~~~~~~~l~~ 343 (483)
T TIGR01320 264 FLRCGNPELTEQHRAKVYGQASVGAPPMSVPHLDTRVVDGKKWLLFGPYAGWSPKFLKHGSILDLPLSIRPDNLLSMLGV 343 (483)
T ss_pred EEEeCCHHHHhhcCeEEEecCCCCCCCcEEecCCCccccCCEEEEECcCCCcchHhhcCCchhHHhhcCCHhhHHHHHHH
Confidence 9999754 2234567799999987767666 66 445677665 999998 6666776521 233343433331
Q ss_pred --cCCCccccchhhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCC-----CCccc-ceEEEec
Q psy3952 141 --RYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSS-----GDLVD-DFVFHSA 212 (252)
Q Consensus 141 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d-----~~p~~-~~~i~~~ 212 (252)
.+..+|+ ..+.++..+. ...++.+++++|.++.+++...++|+|++.++.| |..+. +|+|...
T Consensus 344 ~~~~~~~~~-------~~~~e~~~~~--~~~~~~~~~~~p~~~~~d~~~~~~GiR~Q~i~~~~~~~~g~l~~g~~~i~~~ 414 (483)
T TIGR01320 344 GLTEMDLTK-------YLIGQLRKSE--EERVSALREFYPEAIDSDWELIVAGQRVQVIKKDPEKGGGVLEFGTTLIADA 414 (483)
T ss_pred HHhhhHHHH-------HHHHHHHHhH--HHHHHHHHHhCCCCCHHHcEEccCceEEEEEecCCCCCcCEEecCCeEEECC
Confidence 1122222 3333333322 2457899999999999999999999999999877 33443 6688888
Q ss_pred CCeEEEeccCCccccchHHHHHHHHHHHHh
Q psy3952 213 GRTLHCRNAPSPAATSSLAIAKHILNELRR 242 (252)
Q Consensus 213 ~~~~~~~G~~~~G~t~a~~~g~~va~~i~~ 242 (252)
++.+++....|||.|+|..+|+.|++.+-.
T Consensus 415 ~~~~~~l~~~SPgaTss~~i~~~v~~~~~~ 444 (483)
T TIGR01320 415 DGSIAGLLGASPGASTAVSIMLDLLERCFP 444 (483)
T ss_pred CCeEEEecCCCchHHhhHHHHHHHHHHHhH
Confidence 999999888999999999999999987653
No 7
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.93 E-value=3.4e-25 Score=192.72 Aligned_cols=189 Identities=20% Similarity=0.220 Sum_probs=141.7
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeE-EEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA 79 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~ 79 (252)
|++.|+++|++++++++|++++..+++| .|.|++| .+.||.||+|+|+|+..|.+ .++.|.+++++.++..
T Consensus 143 l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~l~~-------~~~~~~~g~~~~~~~~ 214 (337)
T TIGR02352 143 LEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGELLP-------LPLRPVRGQPLRLEAP 214 (337)
T ss_pred HHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhhccc-------CCccccCceEEEeecc
Confidence 3577899999999999999999888776 4899999 99999999999999998753 4678999999988643
Q ss_pred ccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHH
Q psy3952 80 KQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE 159 (252)
Q Consensus 80 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (252)
....... +.... ......+++|..+|++++|++.... ..+. ..+. +.++
T Consensus 215 ~~~~~~~---~~~~~-~~~~~~y~~p~~~g~~~iG~~~~~~----~~~~-~~~~---------------------~~~~- 263 (337)
T TIGR02352 215 AVPLLNR---PLRAV-VYGRRVYIVPRRDGRLVVGATMEES----GFDT-TPTL---------------------GGIK- 263 (337)
T ss_pred ccccCCc---ccceE-EEcCCEEEEEcCCCeEEEEEecccc----CccC-CCCH---------------------HHHH-
Confidence 1111111 11000 0123467888888899999765432 1110 1011 2233
Q ss_pred HHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe---cCCeEEEeccCCccccchHHHHHHH
Q psy3952 160 MIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS---AGRTLHCRNAPSPAATSSLAIAKHI 236 (252)
Q Consensus 160 l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~---~~~~~~~~G~~~~G~t~a~~~g~~v 236 (252)
.+.+.+.++||.++..++.+.|+|+||++ +|+.| +|+. .+|+|+++|++|+|++++|++|+.+
T Consensus 264 --------~l~~~~~~~~P~l~~~~~~~~~~g~r~~t--~D~~p----iig~~~~~~~~~~~~g~~g~G~~~~p~~g~~l 329 (337)
T TIGR02352 264 --------ELLRDAYTILPALKEARLLETWAGLRPGT--PDNLP----YIGEHPEDRRLLIATGHYRNGILLAPATAEVI 329 (337)
T ss_pred --------HHHHHHHHhCCCcccCcHHHheecCCCCC--CCCCC----EeCccCCCCCEEEEcccccCceehhhHHHHHH
Confidence 34488999999999999999999999986 78766 4664 3699999999999999999999999
Q ss_pred HHHHHh
Q psy3952 237 LNELRR 242 (252)
Q Consensus 237 a~~i~~ 242 (252)
|++|.+
T Consensus 330 a~~i~~ 335 (337)
T TIGR02352 330 ADLILG 335 (337)
T ss_pred HHHHhc
Confidence 999975
No 8
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.92 E-value=5.7e-25 Score=195.04 Aligned_cols=191 Identities=15% Similarity=0.138 Sum_probs=143.0
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ 81 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~ 81 (252)
++++++ |++++++++|++|+.++++|.|+|++|..++|++||+|+|+|+..+..++ .+|+.|++|+++.++++..
T Consensus 142 ~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l~~~~----~~pi~p~rg~~~~~~~~~~ 216 (381)
T TIGR03197 142 LAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQLAQTA----HLPLRPVRGQVSHLPATEA 216 (381)
T ss_pred HhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccccccccc----cCCccccccceeeccCCCc
Confidence 456777 99999999999999888889999999845999999999999999887653 5788999999998864311
Q ss_pred -ccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHHH
Q psy3952 82 -HLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEM 160 (252)
Q Consensus 82 -~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (252)
......+ ..+.|++|..+|++++|.+.+.. +... ..+. +.++
T Consensus 217 ~~~~~~~~---------~~~~y~~p~~~g~~~iG~t~~~~----~~~~-~~~~---------------------~~~~-- 259 (381)
T TIGR03197 217 LSALKTVL---------CYDGYLTPANNGEHCIGASYDRN----DDDL-ALRE---------------------ADHA-- 259 (381)
T ss_pred ccccCceE---------eCCceecccCCCceEeecccCCC----CCCC-CcCH---------------------HHHH--
Confidence 0111110 12347888888999999765432 1111 1000 2222
Q ss_pred HhhhChhHHHHHHHHhccCCC-----CCCceecCCcceeEeecCCCCcccceEEEe------------------------
Q psy3952 161 IMSWFPSMRVNELKQYIEEIE-----AGDIQRGPSGVRAQALSSSGDLVDDFVFHS------------------------ 211 (252)
Q Consensus 161 ~~~~~~~~~~~~~~~~~P~l~-----~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~------------------------ 211 (252)
.+++.+.++||.++ +.++.+.|+|+||.+ ||+.|+.+.+-+.
T Consensus 260 -------~~~~~~~~~~P~l~~~~~~~~~~~~~~~G~r~~t--~D~~Piig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (381)
T TIGR03197 260 -------ENLERLAECLPALAWASEVDISALQGRVGVRCAS--PDHLPLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPY 330 (381)
T ss_pred -------HHHHHHHHhCcccchhhccCccccCceEEEeccC--CCcCccCCCCCCHHHHHHHHHHhcccccccccccCCC
Confidence 33478999999997 678999999999986 8998864432110
Q ss_pred cCCeEEEeccCCccccchHHHHHHHHHHHHhh
Q psy3952 212 AGRTLHCRNAPSPAATSSLAIAKHILNELRRE 243 (252)
Q Consensus 212 ~~~~~~~~G~~~~G~t~a~~~g~~va~~i~~~ 243 (252)
.+|+|+++|++|+||+++|.+|+.+|++|.+.
T Consensus 331 ~~g~~~a~G~~g~G~~~ap~~g~~la~~i~~~ 362 (381)
T TIGR03197 331 YPGLYVLGGLGSRGLTSAPLAAEILAAQICGE 362 (381)
T ss_pred CCCeEEEecccchHHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999999999999999755
No 9
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.92 E-value=2.9e-24 Score=189.44 Aligned_cols=210 Identities=30% Similarity=0.451 Sum_probs=169.4
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcE-EEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDH-LESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNP 78 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~-i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~ 78 (252)
|++.|+++|++++.+++|++|++.+++ +.+.|.+|++ ++|+.||||||.+|+.|++++|++.+....|++|+|+++++
T Consensus 159 l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~~~~~P~~G~y~~~~~ 238 (429)
T COG0579 159 LAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPEDFKIFPVRGEYLVLDN 238 (429)
T ss_pred HHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcccccCccceEEEEEcc
Confidence 578899999999999999999998885 5578888844 99999999999999999999998766889999999999997
Q ss_pred CccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccC-ccccccchhHHhhhhcCCCccccchhhhhhhh
Q psy3952 79 AKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEG-YRWRDFSVRELFSTLRYPGFWRLGLKYTRYGS 157 (252)
Q Consensus 79 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (252)
......++.|||+|++..|+.++|+.++.+|.+++||++.+.+.... +...++ +..
T Consensus 239 ~~~~~~~~~Iy~~p~~~~p~~gV~~~~~idG~~l~GP~A~~~~~~~k~~~~~~~-----------------------d~~ 295 (429)
T COG0579 239 EVKALLRHKIYPVPNPGLPGLGVHHTPTIDGSLLFGPNALDSPKFLKGDRGVDF-----------------------DLL 295 (429)
T ss_pred cccccccceeecCCCCCCCCCcceeecccCCeEEECCCcccchhhhcccccccc-----------------------chh
Confidence 65567889999999999899999999999999999999886522111 111111 112
Q ss_pred HHHHhhhChhHHHHHHHHhccCCC-CCCceecCCcceeEeecCCCCcccceEEEe---cCCeEEEeccCCccccchHHHH
Q psy3952 158 KEMIMSWFPSMRVNELKQYIEEIE-AGDIQRGPSGVRAQALSSSGDLVDDFVFHS---AGRTLHCRNAPSPAATSSLAIA 233 (252)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~P~l~-~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~---~~~~~~~~G~~~~G~t~a~~~g 233 (252)
+ .+......++|.+. .......++|.||+. ..+..+..+|++-. .++.+...|.-++|+|.+++++
T Consensus 296 d---------~v~~~~~~~~~~~~~~~~~~~~y~~~r~~~-~~~~~~~~~~~ip~~~~~~~~~~~aGiRsq~lt~~~a~~ 365 (429)
T COG0579 296 D---------SVRKANSRGMPDLGIKNNVLANYAGIRPIL-KEPRLPALDFIIPEAKDEDWFINVAGIRSQGLTADPAIA 365 (429)
T ss_pred h---------hHHHhhhhhcccccccccchhhhheecccc-ccccccccceecccccCCCCceeeeeEEccccccChhHh
Confidence 2 22356778889887 566677899999976 44455566777753 3788899999999999999999
Q ss_pred HHHHHHHHhh
Q psy3952 234 KHILNELRRE 243 (252)
Q Consensus 234 ~~va~~i~~~ 243 (252)
+.+.++++++
T Consensus 366 ~~~~~~~t~~ 375 (429)
T COG0579 366 GGVLELLTER 375 (429)
T ss_pred hhHhhhcccc
Confidence 9999998875
No 10
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.92 E-value=6.6e-24 Score=190.13 Aligned_cols=192 Identities=13% Similarity=0.128 Sum_probs=140.0
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeE-EEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCc
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK 80 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~ 80 (252)
++.++++|++|+++++|++++.+++++ .|+|+++ ++.|++||+|+|+|+..+.+.+|. ++|+.|++++.+.++...
T Consensus 208 ~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~~l~~~~g~--~~pi~p~rg~~~~~~~~~ 284 (416)
T PRK00711 208 AAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYSTALLKPLGV--DIPVYPLKGYSLTVPITD 284 (416)
T ss_pred HHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchHHHHHHhCC--CcccCCccceEEEEecCC
Confidence 567888999999999999999887776 4888888 899999999999999999988886 578999999887664221
Q ss_pred cccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHHH
Q psy3952 81 QHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEM 160 (252)
Q Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (252)
. ....+....+. ... +..++.+|++++|+..+.. +++. ..+. +..+
T Consensus 285 -~-~~~p~~~~~~~---~~~-~~~~~~~~~~~iG~~~~~~----~~~~-~~~~---------------------~~~~-- 330 (416)
T PRK00711 285 -E-DRAPVSTVLDE---TYK-IAITRFDDRIRVGGMAEIV----GFDL-RLDP---------------------ARRE-- 330 (416)
T ss_pred -C-CCCCceeEEec---ccC-EEEeecCCceEEEEEEEec----CCCC-CCCH---------------------HHHH--
Confidence 1 01111111111 111 2334457889998754421 1111 1011 1122
Q ss_pred HhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe--cCCeEEEeccCCccccchHHHHHHHHH
Q psy3952 161 IMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS--AGRTLHCRNAPSPAATSSLAIAKHILN 238 (252)
Q Consensus 161 ~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~--~~~~~~~~G~~~~G~t~a~~~g~~va~ 238 (252)
.+.+.+.++||.+++.++.+.|+|+||++ +|+.|+ |+. .+|+|+++|++|+||++||++|+.+++
T Consensus 331 -------~l~~~~~~~~P~l~~~~~~~~w~G~r~~t--~D~~Pi----IG~~~~~gl~~a~G~~g~G~~~ap~~g~~la~ 397 (416)
T PRK00711 331 -------TLEMVVRDLFPGGGDLSQATFWTGLRPMT--PDGTPI----VGATRYKNLWLNTGHGTLGWTMACGSGQLLAD 397 (416)
T ss_pred -------HHHHHHHHHCCCcccccccceeeccCCCC--CCCCCE----eCCcCCCCEEEecCCchhhhhhhhhHHHHHHH
Confidence 23367899999999888999999999876 888775 554 379999999999999999999999999
Q ss_pred HHHhh
Q psy3952 239 ELRRE 243 (252)
Q Consensus 239 ~i~~~ 243 (252)
+|.+.
T Consensus 398 li~g~ 402 (416)
T PRK00711 398 LISGR 402 (416)
T ss_pred HHcCC
Confidence 99864
No 11
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.92 E-value=1.6e-23 Score=192.65 Aligned_cols=201 Identities=15% Similarity=0.160 Sum_probs=145.0
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeE-EEEe---CCC--cEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEE
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESV-TIST---KQG--DHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYL 74 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t---~~g--~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~ 74 (252)
+++.|+++|++|+++++|++|+++++++ .|++ .+| .+|.|++||||||+|++.|++++|. ++++.|.||+++
T Consensus 134 l~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~--~~~i~p~kG~~l 211 (516)
T TIGR03377 134 NVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL--DIRMFPAKGALL 211 (516)
T ss_pred HHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC--CCceecceEEEE
Confidence 3678999999999999999999887764 3443 223 3699999999999999999999987 688999999999
Q ss_pred EeCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhh
Q psy3952 75 LLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTR 154 (252)
Q Consensus 75 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (252)
+++.... ...+...+.+ ..+.++.| .+|.+++|++.+...+++++.. + .
T Consensus 212 v~~~~~~---~~~~~~~~~~---~~g~~~~P-~~~~~liGtT~~~~~~~~~~~~---~---------------------~ 260 (516)
T TIGR03377 212 IMNHRIN---NTVINRCRKP---SDADILVP-GDTISIIGTTSERIDDPDDLPV---T---------------------Q 260 (516)
T ss_pred EECCccc---ccccccccCC---CCCcEEEE-CCCeEEEecCCCCCCCCCCCCC---C---------------------H
Confidence 9975321 1112111111 23456777 4778999988764322222211 1 1
Q ss_pred hhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecC-CC---Ccccce-EEEe-----cCCeEEEeccCCc
Q psy3952 155 YGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSS-SG---DLVDDF-VFHS-----AGRTLHCRNAPSP 224 (252)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~-d~---~p~~~~-~i~~-----~~~~~~~~G~~~~ 224 (252)
++++.+ ++.+.+++|.|...+|.+.|+|+||....+ ++ ...++| +++. .+|+++++|..
T Consensus 261 ~~v~~l---------l~~~~~~~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~GGk-- 329 (516)
T TIGR03377 261 EEVDVL---------LREGAKLAPMLAQTRILRAFAGVRPLVAVDDDPSGRNISRGIVLLDHAERDGLPGFITITGGK-- 329 (516)
T ss_pred HHHHHH---------HHHHHHhCcccccCCEEEEEeecccccCCCCCCCccccCCCeEEeecccccCCCCeEEEecch--
Confidence 345444 489999999999999999999999986432 11 112455 4442 27999999943
Q ss_pred cccchHHHHHHHHHHHHhhccc
Q psy3952 225 AATSSLAIAKHILNELRREFKL 246 (252)
Q Consensus 225 G~t~a~~~g~~va~~i~~~~~~ 246 (252)
+|+++.+|+.+++++.+.++.
T Consensus 330 -ltt~r~~Ae~~~d~~~~~l~~ 350 (516)
T TIGR03377 330 -LTTYRLMAEWATDVVCKKLGN 350 (516)
T ss_pred -HHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999998763
No 12
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.92 E-value=3.1e-23 Score=190.03 Aligned_cols=205 Identities=15% Similarity=0.191 Sum_probs=148.5
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC----cEEEcCEEEEcCCCChHHHHHH-cCCCCCCceeeeeeEEEEe
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQG----DHLESSYALVCAGLQADEMALK-SGCSLEPAIVPFRGEYLLL 76 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g----~~i~A~~VV~AaG~ws~~l~~~-~g~~~~~~~~p~~g~~~~~ 76 (252)
++.|+++|++++++++|+++.++++.|.|.+.++ .++.|+.||||+|+|++.++++ +|.....++.|.||+++++
T Consensus 162 ~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~v~p~kG~~lv~ 241 (502)
T PRK13369 162 ALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSRNVRLVKGSHIVV 241 (502)
T ss_pred HHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCcceEEeeEEEEEe
Confidence 4678899999999999999999888787766443 2599999999999999999885 4753346789999999998
Q ss_pred CCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecc-cccCccccccchhHHhhhhcCCCccccchhhhhh
Q psy3952 77 NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF-KKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRY 155 (252)
Q Consensus 77 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (252)
+...... ...+++.++ ..-+++.|..+|.+++|++..... .+++... +.+
T Consensus 242 ~~~~~~~-~~~~~~~~d----gr~~~i~P~~~~~~liGtTd~~~~~~~~~~~~------------------------~~~ 292 (502)
T PRK13369 242 PKFWDGA-QAYLFQNPD----KRVIFANPYEGDFTLIGTTDIAYEGDPEDVAA------------------------DEE 292 (502)
T ss_pred CCccCCC-ceEEEeCCC----CeEEEEEEecCCEEEEEecCccccCCCCCCCC------------------------CHH
Confidence 6432111 112233222 223678888778889998865321 1111111 114
Q ss_pred hhHHHHhhhChhHHHHHHHHhcc-CCCCCCceecCCcceeEeecCCC---CcccceEEEec-----CCeEEEeccCCccc
Q psy3952 156 GSKEMIMSWFPSMRVNELKQYIE-EIEAGDIQRGPSGVRAQALSSSG---DLVDDFVFHSA-----GRTLHCRNAPSPAA 226 (252)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~P-~l~~~~i~~~w~G~rp~~~~~d~---~p~~~~~i~~~-----~~~~~~~G~~~~G~ 226 (252)
+++++ ++.++++|| .|+..+|.+.|+|+||.+.+..+ ...++|.|..+ +|+++++| .++
T Consensus 293 ~i~~l---------l~~~~~~~~~~l~~~~i~~~waGlRPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~i~G---gk~ 360 (502)
T PRK13369 293 EIDYL---------LDAANRYFKEKLRREDVVHSFSGVRPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLSVFG---GKI 360 (502)
T ss_pred HHHHH---------HHHHHHhhCCCCCHhHEEEEeeceEEcCCCCCCCcccCCcceEEeeccccCCCCeEEEeC---ChH
Confidence 45554 489999997 89999999999999998732211 22367777543 68999998 369
Q ss_pred cchHHHHHHHHHHHHhhcccc
Q psy3952 227 TSSLAIAKHILNELRREFKLD 247 (252)
Q Consensus 227 t~a~~~g~~va~~i~~~~~~~ 247 (252)
|+++++|+.+++++.+.++..
T Consensus 361 Tt~r~~Ae~v~d~~~~~l~~~ 381 (502)
T PRK13369 361 TTFRKLAEHALERLKPFFPQM 381 (502)
T ss_pred hhHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999998753
No 13
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.91 E-value=4.1e-23 Score=189.23 Aligned_cols=203 Identities=17% Similarity=0.146 Sum_probs=149.5
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCC---C--cEEEcCEEEEcCCCChHHHHHH-cCCCCCCceeeeeeEEEE
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQ---G--DHLESSYALVCAGLQADEMALK-SGCSLEPAIVPFRGEYLL 75 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~---g--~~i~A~~VV~AaG~ws~~l~~~-~g~~~~~~~~p~~g~~~~ 75 (252)
++.|+++|++++++++|+++..+++.|.|.+.+ | .+|.|++||||||+|++.+.++ +|...+.++.|.||++++
T Consensus 162 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~i~p~kG~~lv 241 (508)
T PRK12266 162 ARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPSPYGIRLVKGSHIV 241 (508)
T ss_pred HHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCCCcceeeeeeEEEE
Confidence 467889999999999999999888878776532 3 2699999999999999999875 476445789999999999
Q ss_pred eCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecc-cccCccccccchhHHhhhhcCCCccccchhhhh
Q psy3952 76 LNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF-KKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTR 154 (252)
Q Consensus 76 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (252)
++.... .....+++.++ ...+++.|..+|.+++|++..+.. .+++... + .
T Consensus 242 l~~~~~-~~~~~~~~~~d----gr~v~~~P~~~g~~liGttd~~~~~~~~~~~~---~---------------------~ 292 (508)
T PRK12266 242 VPRLFD-HDQAYILQNPD----GRIVFAIPYEDDFTLIGTTDVEYKGDPAKVAI---S---------------------E 292 (508)
T ss_pred ECCcCC-CCcEEEEeCCC----CCEEEEEEeCCCeEEEecCCCCCCCCCCCCCC---C---------------------H
Confidence 875321 11222334332 234667887788999998765321 1111111 0 1
Q ss_pred hhhHHHHhhhChhHHHHHHHHhcc-CCCCCCceecCCcceeEeecCCCCc-----ccceEEEec-----CCeEEEeccCC
Q psy3952 155 YGSKEMIMSWFPSMRVNELKQYIE-EIEAGDIQRGPSGVRAQALSSSGDL-----VDDFVFHSA-----GRTLHCRNAPS 223 (252)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~P-~l~~~~i~~~w~G~rp~~~~~d~~p-----~~~~~i~~~-----~~~~~~~G~~~ 223 (252)
++++++ ++.+++++| .|+..+|.+.|+|+||.+ +|+.+ .++|+|..+ +|+++++|..
T Consensus 293 ~~i~~L---------l~~~~~~~p~~l~~~~ii~~waG~RPl~--~d~~~~~~~~sr~~~i~~~~~~g~~gli~v~Ggk- 360 (508)
T PRK12266 293 EEIDYL---------CKVVNRYFKKQLTPADVVWTYSGVRPLC--DDESDSAQAITRDYTLELDDENGGAPLLSVFGGK- 360 (508)
T ss_pred HHHHHH---------HHHHHHhcCCCCCHHHEEEEeeeeEeeC--CCCCCCcccCCcceEEEecccCCCCCeEEEEcCh-
Confidence 345544 489999996 799999999999999987 44333 478888543 6899999854
Q ss_pred ccccchHHHHHHHHHHHHhhcccc
Q psy3952 224 PAATSSLAIAKHILNELRREFKLD 247 (252)
Q Consensus 224 ~G~t~a~~~g~~va~~i~~~~~~~ 247 (252)
+|+++.+|+.+++.+.+.++..
T Consensus 361 --~Tt~r~mAe~~~~~~~~~l~~~ 382 (508)
T PRK12266 361 --ITTYRKLAEHALEKLAPYLPQM 382 (508)
T ss_pred --HHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998744
No 14
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.91 E-value=8.6e-24 Score=184.52 Aligned_cols=202 Identities=19% Similarity=0.233 Sum_probs=145.0
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA 79 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~ 79 (252)
|.+.++++|++|+++++|++|+.++++|+ |+|.+| .+.||+||||+|+|+..|+++++. +.++.|.+++++.+++.
T Consensus 153 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g-~i~ad~vV~a~G~~s~~l~~~~~~--~~~~~~~~~~~~~~~~~ 229 (358)
T PF01266_consen 153 LAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDG-EIRADRVVLAAGAWSPQLLPLLGL--DLPLRPVRGQVLVLEPP 229 (358)
T ss_dssp HHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTE-EEEECEEEE--GGGHHHHHHTTTT--SSTEEEEEEEEEEEEGC
T ss_pred hHHHHHHhhhhccccccccchhhccccccccccccc-ccccceeEecccccceeeeecccc--cccccccceEEEEEccC
Confidence 35678899999999999999999999998 999999 799999999999999999999986 46899999999998753
Q ss_pred ccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHH
Q psy3952 80 KQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE 159 (252)
Q Consensus 80 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (252)
.. .....+...+....+....++.|.. |.+.+|+...... .... .... ...+.
T Consensus 230 ~~-~~~~~~~~~~~~~~~~~~~~~~p~~-g~~~ig~~~~~~~--~~~~-----~~~~------------------~~~~~ 282 (358)
T PF01266_consen 230 ES-PLAPAILFPPVIFGPSDGVYIRPRP-GGVLIGTADGNYD--PGPS-----PEDS------------------SGEDP 282 (358)
T ss_dssp CS-GSSSEEEEEEECESSCTEEEEEEET-TEEEEEESECEEE--ESSS-----HHHH------------------SHHHH
T ss_pred Cc-ccccccccccccccccccceecccc-ccccccccccccc--cccc-----cccc------------------ccccc
Confidence 22 1222222222222224577888877 8889984322110 0110 0000 00000
Q ss_pred HHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe---cCCeEEEeccCCccccchHHHHHHH
Q psy3952 160 MIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS---AGRTLHCRNAPSPAATSSLAIAKHI 236 (252)
Q Consensus 160 l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~---~~~~~~~~G~~~~G~t~a~~~g~~v 236 (252)
..... .+.+.+.+.+++|.|+..++.+.|+|+||.+ +|+.| +++. .+|+|+++|++|+|+++||++|+.+
T Consensus 283 ~~~~~-~~~l~~~~~~~~p~l~~~~v~~~~~g~r~~t--~d~~p----~ig~~~~~~~l~~~~g~~~~G~~~a~~~a~~~ 355 (358)
T PF01266_consen 283 DVDEE-IDELLERLARLLPGLGDAEVVRSWAGIRPFT--PDGRP----IIGELPGSPNLYLAGGHGGHGFTLAPGLAELL 355 (358)
T ss_dssp HHHHH-HHHHHHHHHHHSGGGGGSEEEEEEEEEEEEE--TTSEC----EEEEESSEEEEEEEECETTCHHHHHHHHHHHH
T ss_pred cccHH-HHHhHHHHHHHHHHhhhccccccccceeeec--cCCCe----eeeecCCCCCEEEEECCCchHHHHHHHHHHHH
Confidence 00001 2355689999999999999999999999986 88765 4665 4799999999999999999999999
Q ss_pred HHH
Q psy3952 237 LNE 239 (252)
Q Consensus 237 a~~ 239 (252)
||+
T Consensus 356 a~~ 358 (358)
T PF01266_consen 356 ADL 358 (358)
T ss_dssp HHH
T ss_pred hcC
Confidence 986
No 15
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.91 E-value=2.8e-23 Score=185.67 Aligned_cols=193 Identities=13% Similarity=0.098 Sum_probs=144.0
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEc-CCeE-EEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKEN-PESV-TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNP 78 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~ 78 (252)
|++.|+++|++++++|+|++++.. ++.+ .|.|++| ++.|++||+|||+|+..+.+++|+ .+|+.|.++++++.++
T Consensus 189 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~--~~~~~~~~~~~~~~~~ 265 (407)
T TIGR01373 189 YARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGF--RLPIESHPLQALVSEP 265 (407)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCC--CCCcCcccceEEEecC
Confidence 356788999999999999999864 4554 5899999 899999999999999999998887 4778888888777654
Q ss_pred CccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhH
Q psy3952 79 AKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSK 158 (252)
Q Consensus 79 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (252)
.. +.....+. .+ ...+|++|+.+|++++|.+.+.. .++.... +. +.++
T Consensus 266 ~~-~~~~~~~~-~~-----~~~~y~~p~~~g~~~ig~~~~~~---~~~~~~~-~~---------------------~~~~ 313 (407)
T TIGR01373 266 LK-PIIDTVVM-SN-----AVHFYVSQSDKGELVIGGGIDGY---NSYAQRG-NL---------------------PTLE 313 (407)
T ss_pred CC-CCcCCeEE-eC-----CCceEEEEcCCceEEEecCCCCC---CccCcCC-CH---------------------HHHH
Confidence 21 11222221 11 23468888888899999653211 1111100 00 1122
Q ss_pred HHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec--CCeEEEeccCCccccchHHHHHHH
Q psy3952 159 EMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA--GRTLHCRNAPSPAATSSLAIAKHI 236 (252)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~--~~~~~~~G~~~~G~t~a~~~g~~v 236 (252)
.+++.+.++||.|+..++.+.|+|+||++ ||+.|+ |+.. +|+|+++|++|+|+++||++|+.+
T Consensus 314 ---------~l~~~~~~~~P~l~~~~~~~~w~G~~~~t--~D~~Pi----Ig~~~~~gl~~a~G~~g~G~~~ap~~G~~l 378 (407)
T TIGR01373 314 ---------HVLAAILEMFPILSRVRMLRSWGGIVDVT--PDGSPI----IGKTPLPNLYLNCGWGTGGFKATPASGTVF 378 (407)
T ss_pred ---------HHHHHHHHhCCCcCCCCeEEEeccccccC--CCCCce----eCCCCCCCeEEEeccCCcchhhchHHHHHH
Confidence 34478899999999889999999999986 888664 6653 799999999999999999999999
Q ss_pred HHHHHhh
Q psy3952 237 LNELRRE 243 (252)
Q Consensus 237 a~~i~~~ 243 (252)
+++|.+.
T Consensus 379 a~li~~~ 385 (407)
T TIGR01373 379 AHTLARG 385 (407)
T ss_pred HHHHhCC
Confidence 9999743
No 16
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.90 E-value=5.6e-23 Score=183.94 Aligned_cols=196 Identities=16% Similarity=0.166 Sum_probs=136.4
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC-----cEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEE
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQG-----DHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLL 75 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g-----~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~ 75 (252)
|++.|+++|++++++++|++++.++++|.|.+.++ .+++|++||+|+|+|+..++++++. .+++.|++|+++.
T Consensus 203 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~--~~~i~p~~g~~~~ 280 (410)
T PRK12409 203 LAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGD--RVNVYPVKGYSIT 280 (410)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCC--CCccccCCceEEE
Confidence 35778899999999999999998787777654322 2699999999999999999998885 5789999999887
Q ss_pred eCCCcccc-ccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhh
Q psy3952 76 LNPAKQHL-VRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTR 154 (252)
Q Consensus 76 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (252)
++...... .....+...+. ...+...+...|++++|++.+.. ++.. ..+.
T Consensus 281 ~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~igg~~~~~----~~~~-~~~~--------------------- 331 (410)
T PRK12409 281 VNLDDEASRAAAPWVSLLDD---SAKIVTSRLGADRFRVAGTAEFN----GYNR-DIRA--------------------- 331 (410)
T ss_pred eecCCccccccCCceeeeec---CCcEEEEecCCCcEEEEEEEEec----CCCC-CCCH---------------------
Confidence 75321110 00000011111 11111222235678888764431 1111 1111
Q ss_pred hhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe--cCCeEEEeccCCccccchHHH
Q psy3952 155 YGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS--AGRTLHCRNAPSPAATSSLAI 232 (252)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~--~~~~~~~~G~~~~G~t~a~~~ 232 (252)
+.++ .+++.+.++||.|++..+. .|+|+||++ +|+.|+ |++ .+|+|+++|++|+|+++||++
T Consensus 332 ~~~~---------~l~~~~~~~~P~l~~~~~~-~w~G~r~~t--~D~~Pi----iG~~~~~~l~~~~G~~~~G~~~ap~~ 395 (410)
T PRK12409 332 DRIR---------PLVDWVRRNFPDVSTRRVV-PWAGLRPMM--PNMMPR----VGRGRRPGVFYNTGHGHLGWTLSAAT 395 (410)
T ss_pred HHHH---------HHHHHHHHhCCCCCccccc-eecccCCCC--CCCCCe----eCCCCCCCEEEecCCcccchhhcccH
Confidence 1222 4457899999999887766 799999976 888774 655 589999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy3952 233 AKHILNELRRE 243 (252)
Q Consensus 233 g~~va~~i~~~ 243 (252)
|+.+|++|.+.
T Consensus 396 g~~lA~~i~~~ 406 (410)
T PRK12409 396 ADLVAQVVAQK 406 (410)
T ss_pred HHHHHHHHcCC
Confidence 99999999764
No 17
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.90 E-value=1.6e-22 Score=186.71 Aligned_cols=201 Identities=13% Similarity=0.142 Sum_probs=142.6
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEe-----CCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEE
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT-IST-----KQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLL 75 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t-----~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~ 75 (252)
++.|+++|++++++++|++|.++++++. |++ +++.+|.|++||||||+|++.|++++|. ++++.|.||++++
T Consensus 156 ~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~--~~~i~p~kG~~lv 233 (546)
T PRK11101 156 MLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADL--RIRMFPAKGSLLI 233 (546)
T ss_pred HHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCC--CCceeecceEEEE
Confidence 5678999999999999999998877643 442 2223799999999999999999999986 6889999999999
Q ss_pred eCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecc--cccCccccccchhHHhhhhcCCCccccchhhh
Q psy3952 76 LNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF--KKEGYRWRDFSVRELFSTLRYPGFWRLGLKYT 153 (252)
Q Consensus 76 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (252)
++.... ...++..+.+ ..+.++.| .++.+++|++.+... ++++... +
T Consensus 234 ~~~~~~---~~vi~~~~~~---~~~~~~vp-~~~~~liGtT~~~~~~~~~~~~~~------------------------t 282 (546)
T PRK11101 234 MDHRIN---NHVINRCRKP---ADADILVP-GDTISLIGTTSTRIDYDQIDDNRV------------------------T 282 (546)
T ss_pred ECCccC---ceeEeccCCC---CCCCEEEe-cCCEEEEeeCCCCccCCCcCCCCC------------------------C
Confidence 975321 1122222221 11224555 467789998875431 1111111 1
Q ss_pred hhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCC----ccc-ceEEEe-----cCCeEEEeccCC
Q psy3952 154 RYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGD----LVD-DFVFHS-----AGRTLHCRNAPS 223 (252)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~----p~~-~~~i~~-----~~~~~~~~G~~~ 223 (252)
.++++.+ ++.+.+++|.|...+|.+.|+|+||...+++.. ..+ +++++. .+|+++++|.
T Consensus 283 ~~~i~~L---------l~~~~~l~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~GG-- 351 (546)
T PRK11101 283 AEEVDIL---------LREGEKLAPVMAKTRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGG-- 351 (546)
T ss_pred HHHHHHH---------HHHHHHhCCCCCccCEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCCCCeEEEECC--
Confidence 1445544 488899999999999999999999986322210 112 356653 2799999994
Q ss_pred ccccchHHHHHHHHHHHHhhcccc
Q psy3952 224 PAATSSLAIAKHILNELRREFKLD 247 (252)
Q Consensus 224 ~G~t~a~~~g~~va~~i~~~~~~~ 247 (252)
.+|+++.+|+.+++++.+.++..
T Consensus 352 -kltt~r~~Ae~v~d~v~~~l~~~ 374 (546)
T PRK11101 352 -KLMTYRLMAEWATDAVCRKLGNT 374 (546)
T ss_pred -hHHHHHHHHHHHHHHHHHhcCCC
Confidence 39999999999999999987643
No 18
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.90 E-value=1.4e-22 Score=179.24 Aligned_cols=195 Identities=15% Similarity=0.150 Sum_probs=139.5
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ 81 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~ 81 (252)
.+.++++|++++.+++|++++.++++|.|+|++| ++.||.||+|+|+|+..++.++ .+|+.|.+++++.+++...
T Consensus 156 ~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~----~~~i~~~~~~~~~~~~~~~ 230 (376)
T PRK11259 156 LRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKDLLPPL----ELPLTPVRQVLAWFQADGR 230 (376)
T ss_pred HHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhhhcccc----cCCceEEEEEEEEEecCCc
Confidence 4567788999999999999999888899999999 8999999999999999887653 4678999999988865311
Q ss_pred --ccccceee--cCCCCCCCCceeEEEEecCCc-EEEcccceecc--cccCccccccchhHHhhhhcCCCccccchhhhh
Q psy3952 82 --HLVRGNIY--PVPDPNFPFLGVHFTPRMDGS-VWLGPNAVLAF--KKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTR 154 (252)
Q Consensus 82 --~~~~~~i~--~~~~~~~~~~~~~~~~~~~g~-~~iG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (252)
...+...+ ..++ ...+|++|..+|+ +++|++..... .+.++.... .. .
T Consensus 231 ~~~~~~~p~~~~~~~~----~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~~~~~~-~~--------------------~ 285 (376)
T PRK11259 231 YSEPNRFPAFIWEVPD----GDQYYGFPAENGPGLKIGKHNGGQEITSPDERDRFV-TV--------------------A 285 (376)
T ss_pred cCCccCCCEEEEecCC----CceeEeccCCCCCceEEEECCCCCCCCChhhccCCC-Cc--------------------H
Confidence 00111111 1111 1236677877787 99987543100 001110000 00 0
Q ss_pred hhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe---cCCeEEEeccCCccccchHH
Q psy3952 155 YGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS---AGRTLHCRNAPSPAATSSLA 231 (252)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~---~~~~~~~~G~~~~G~t~a~~ 231 (252)
+.++ .+.+.+.++||.++. +.+.|+|+||.+ ||+.| +|+. .+|+++++|++|+|+|++|+
T Consensus 286 ~~~~---------~l~~~~~~~~P~~~~--~~~~~~g~~~~t--~D~~P----~ig~~~~~~gl~~~~G~~g~G~~~ap~ 348 (376)
T PRK11259 286 EDGA---------ELRPFLRNYLPGVGP--CLRGAACTYTNT--PDEHF----IIDTLPGHPNVLVASGCSGHGFKFASV 348 (376)
T ss_pred HHHH---------HHHHHHHHHCCCCCc--cccceEEecccC--CCCCc----eeecCCCCCCEEEEecccchhhhccHH
Confidence 1222 344788999998876 778899999865 88866 4765 37999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy3952 232 IAKHILNELRRE 243 (252)
Q Consensus 232 ~g~~va~~i~~~ 243 (252)
+|+.+|++|.+.
T Consensus 349 ~g~~la~li~~~ 360 (376)
T PRK11259 349 LGEILADLAQDG 360 (376)
T ss_pred HHHHHHHHHhcC
Confidence 999999999743
No 19
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.90 E-value=4e-22 Score=186.40 Aligned_cols=202 Identities=15% Similarity=0.127 Sum_probs=145.6
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEc--CCeE-EEEe---CCC--cEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeE
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKEN--PESV-TIST---KQG--DHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGE 72 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~--~~~~-~V~t---~~g--~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~ 72 (252)
|++.|+++|++++++++|+++..+ ++++ .|.. .+| .++.|+.||||||+|++.|.++++.....++.|.||+
T Consensus 238 l~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~~~~~I~p~kG~ 317 (627)
T PLN02464 238 LACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGKAKPMICPSSGV 317 (627)
T ss_pred HHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccCcCCCceEeeeeE
Confidence 467899999999999999999876 3443 3332 122 2589999999999999999999874324459999999
Q ss_pred EEEeCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhh
Q psy3952 73 YLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKY 152 (252)
Q Consensus 73 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (252)
|++++....+.....+++.... ...+++.|. +|++++|+|.++.... ... . +
T Consensus 318 hlvl~~~~~~~~~~~i~~~~~d---gr~~~~~P~-~g~~liGtTd~~~~~~--~~~-~--~------------------- 369 (627)
T PLN02464 318 HIVLPDYYSPEGMGLIVPKTKD---GRVVFMLPW-LGRTVAGTTDSKTPIT--MLP-E--P------------------- 369 (627)
T ss_pred EEecccccCCCCceEEecCCCC---CCEEEEEec-CCcEEEecCCCCCCCC--CCC-C--C-------------------
Confidence 9998642111112334443222 456888997 8899999887653211 111 1 0
Q ss_pred hhhhhHHHHhhhChhHHHHHHHHhcc-CCCCCCceecCCcceeEeecCCCC------cccceEEEe-cCCeEEEeccCCc
Q psy3952 153 TRYGSKEMIMSWFPSMRVNELKQYIE-EIEAGDIQRGPSGVRAQALSSSGD------LVDDFVFHS-AGRTLHCRNAPSP 224 (252)
Q Consensus 153 ~~~~~~~l~~~~~~~~~~~~~~~~~P-~l~~~~i~~~w~G~rp~~~~~d~~------p~~~~~i~~-~~~~~~~~G~~~~ 224 (252)
+.++++.++ +.++++|| .|...+|.+.|+|+||.+ +|+. +.++++|.. .+|++.++|..
T Consensus 370 t~~ei~~Ll---------~~a~~~~~~~l~~~~v~~~waG~RPl~--~d~~~~~~~~~sr~~~i~~~~~gli~i~GGk-- 436 (627)
T PLN02464 370 HEDEIQFIL---------DAISDYLNVKVRRSDVLSAWSGIRPLA--VDPSAKSTESISRDHVVCEEPDGLVTITGGK-- 436 (627)
T ss_pred CHHHHHHHH---------HHHHHhhCCCCChhhEEEEEEeEEeec--cCCCCCcccccCCceEEEecCCCeEEEECCh--
Confidence 114565554 89999999 799999999999999997 3432 235666654 37999999876
Q ss_pred cccchHHHHHHHHHHHHhhc
Q psy3952 225 AATSSLAIAKHILNELRREF 244 (252)
Q Consensus 225 G~t~a~~~g~~va~~i~~~~ 244 (252)
+|+++.+|+.++|.+.+..
T Consensus 437 -~Tt~R~mAe~~~d~~~~~~ 455 (627)
T PLN02464 437 -WTTYRSMAEDAVDAAIKSG 455 (627)
T ss_pred -HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998853
No 20
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.89 E-value=4.1e-22 Score=179.20 Aligned_cols=205 Identities=18% Similarity=0.191 Sum_probs=152.2
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeC-----CCcEEEcCEEEEcCCCChHHHHHHcCCCCC--CceeeeeeEEE
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTK-----QGDHLESSYALVCAGLQADEMALKSGCSLE--PAIVPFRGEYL 74 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~-----~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~--~~~~p~~g~~~ 74 (252)
+..|.++|++++++++|+++.++++-|.|+.. +-.+++|+.||||||+|++++.++.+...+ ..+.|.||.|+
T Consensus 171 a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~skGsHl 250 (532)
T COG0578 171 ARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSKGSHL 250 (532)
T ss_pred HHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceeccceEE
Confidence 46788999999999999999999985556532 224699999999999999999999875433 36999999999
Q ss_pred EeCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceeccc-ccCccccccchhHHhhhhcCCCccccchhhh
Q psy3952 75 LLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFK-KEGYRWRDFSVRELFSTLRYPGFWRLGLKYT 153 (252)
Q Consensus 75 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (252)
+++. ..+.....+++.+.+ ...+++.|. .+..++|+|...... +++... +
T Consensus 251 Vv~~-~~~~~~a~~~~~~~d---~r~~f~iP~-~~~~liGTTD~~~~~~~~~~~~------------------------~ 301 (532)
T COG0578 251 VVDK-KFPINQAVINRCRKD---GRIVFAIPY-EGKTLIGTTDTDYDGDPEDPRI------------------------T 301 (532)
T ss_pred Eecc-cCCCCceEEeecCCC---CceEEEecC-CCCEEeeccccccCCCcccCCC------------------------C
Confidence 9987 223334555555532 345666764 667799999876532 222211 2
Q ss_pred hhhhHHHHhhhChhHHHHHHH-HhccCCCCCCceecCCcceeEeecCCCCc---ccceEEEe-c--CCeEEEeccCCccc
Q psy3952 154 RYGSKEMIMSWFPSMRVNELK-QYIEEIEAGDIQRGPSGVRAQALSSSGDL---VDDFVFHS-A--GRTLHCRNAPSPAA 226 (252)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~-~~~P~l~~~~i~~~w~G~rp~~~~~d~~p---~~~~~i~~-~--~~~~~~~G~~~~G~ 226 (252)
.+++++++ +.++ .+-|.++..+|.+.|+|+||..-+.++.+ .+++.+.. . +|++.++|.. +
T Consensus 302 ~eEidyll---------~~~~~~~~~~l~~~dI~~syaGVRPL~~~~~~~~~~isR~~~l~~~~~~~glltv~GGK---l 369 (532)
T COG0578 302 EEEIDYLL---------DAVNRYLAPPLTREDILSTYAGVRPLVDDGDDDTSAISRDHVLFDHAELAGLLTVAGGK---L 369 (532)
T ss_pred HHHHHHHH---------HHHHhhhhccCChhheeeeeeeeeeccCCCCCchhhccCceEEEecCCCCCeEEEecch---h
Confidence 26777665 7777 45588999999999999999974222222 35555544 4 6999999876 9
Q ss_pred cchHHHHHHHHHHHHhhcccc
Q psy3952 227 TSSLAIAKHILNELRREFKLD 247 (252)
Q Consensus 227 t~a~~~g~~va~~i~~~~~~~ 247 (252)
|+...+|+.+++.+.+.++..
T Consensus 370 TTyR~maE~a~d~v~~~lg~~ 390 (532)
T COG0578 370 TTYRKMAEDALDAVCEKLGIR 390 (532)
T ss_pred HHhHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999865
No 21
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.89 E-value=2.4e-22 Score=178.13 Aligned_cols=202 Identities=19% Similarity=0.188 Sum_probs=148.3
Q ss_pred ChhHHHhCC-cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCC
Q psy3952 1 MGEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA 79 (252)
Q Consensus 1 l~~~a~~~G-~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~ 79 (252)
|++.++++| ..+..+++|..++..++.+.|.|++| +++|++||+|+|+|+..+..+++ ....++.|++++++.+++.
T Consensus 162 l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g-~i~a~~vv~a~G~~~~~l~~~~~-~~~~~~~p~~~~~~~~~~~ 239 (387)
T COG0665 162 LAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGG-TIEADKVVLAAGAWAGELAATLG-ELPLPLRPVRGQALTTEPP 239 (387)
T ss_pred HHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCc-cEEeCEEEEcCchHHHHHHHhcC-CCcCccccccceEEEecCC
Confidence 356788999 56666999999987534578999999 79999999999999999999998 3368899999999999764
Q ss_pred ccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHH
Q psy3952 80 KQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE 159 (252)
Q Consensus 80 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (252)
....... +.+ ........+.|++|..+|++++|.+.+... .... +... ++.
T Consensus 240 ~~~~~~~-~~~-~~~~~~~~~~y~~~~~~g~~~~g~~~~~~~---~~~~-~~~~---------------------~~~-- 290 (387)
T COG0665 240 EGLLADG-LAP-VVLVVDDGGGYIRPRGDGRLRVGGTDEEGG---DDPS-DPER---------------------EDL-- 290 (387)
T ss_pred Ccccccc-ccc-eEEEecCCceEEEEcCCCcEEEeecccccC---CCCc-cccC---------------------cch--
Confidence 2111111 000 000001346788888899999998765431 0110 0000 110
Q ss_pred HHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe---cCCeEEEeccCCccccchHHHHHHH
Q psy3952 160 MIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS---AGRTLHCRNAPSPAATSSLAIAKHI 236 (252)
Q Consensus 160 l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~---~~~~~~~~G~~~~G~t~a~~~g~~v 236 (252)
....+.+.+.+++|.+....+.+.|+|.||.+ +||+.|+ |+. .+|+|+++|++++|+|+||++|+.+
T Consensus 291 -----~~~~l~~~~~~~~P~l~~~~~~~~w~g~~~~t-~pd~~P~----iG~~~~~~~l~~a~G~~~~G~~~~p~~g~~l 360 (387)
T COG0665 291 -----VIAELLRVARALLPGLADAGIEAAWAGLRPPT-TPDGLPV----IGRAAPLPNLYVATGHGGHGFTLAPALGRLL 360 (387)
T ss_pred -----hHHHHHHHHHHhCccccccccceeeeccccCC-CCCCCce----eCCCCCCCCEEEEecCCCcChhhccHHHHHH
Confidence 01234589999999999999999999999865 3888775 553 5899999999999999999999999
Q ss_pred HHHHHhh
Q psy3952 237 LNELRRE 243 (252)
Q Consensus 237 a~~i~~~ 243 (252)
|++|.+.
T Consensus 361 A~li~g~ 367 (387)
T COG0665 361 ADLILGG 367 (387)
T ss_pred HHHHcCC
Confidence 9999974
No 22
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.89 E-value=1.3e-22 Score=184.09 Aligned_cols=199 Identities=14% Similarity=0.127 Sum_probs=138.5
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCc
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK 80 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~ 80 (252)
|++.|+++|++|+++|+|++|+. ++.+.|+|++| ++.|++||+|+|+|+..+...++ .++.|++++++++++..
T Consensus 189 L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~~l~~~~~----~~~~p~~~~~~~t~pl~ 262 (460)
T TIGR03329 189 LRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMASHFPQFE----RSIAIVSSDMVITEPAP 262 (460)
T ss_pred HHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEcccccccccChhhc----CeEEEeccceEecCCCc
Confidence 45678899999999999999985 45578999999 89999999999999988876654 34667778777765421
Q ss_pred cccccceeec----CCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhh
Q psy3952 81 QHLVRGNIYP----VPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYG 156 (252)
Q Consensus 81 ~~~~~~~i~~----~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (252)
+.......+ ..+.. ....|++++.+|++++|........ .+......+. ...
T Consensus 263 -~~~~~~~~~~~~~~~d~~--~~~~y~r~~~dgrll~G~~~~~~~~-~~~~~~~~~~--------------------~~~ 318 (460)
T TIGR03329 263 -DLLAATGLDHGTSVLDSR--IFVHYYRSTPDGRLMLGKGGNTFAY-GGRMLPVFNQ--------------------PSP 318 (460)
T ss_pred -HHHHhhcCCCCceEecch--hhhhheeECCCCcEEEcCCcccccc-CcccccccCC--------------------chH
Confidence 111111111 11111 1124778888899999864321100 0000000000 000
Q ss_pred hHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe---cCCeEEEeccCCccccchHHHH
Q psy3952 157 SKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS---AGRTLHCRNAPSPAATSSLAIA 233 (252)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~---~~~~~~~~G~~~~G~t~a~~~g 233 (252)
. .+.+.+.+.++||.|++.++.+.|+|.++++ +|+.|+ |++ .+|+|+++||+|+|+++|+.+|
T Consensus 319 ~--------~~~l~~~~~~~fP~L~~~~i~~~W~G~~~~t--~D~~P~----iG~~~~~~gl~~a~G~~G~Gv~~a~~~G 384 (460)
T TIGR03329 319 Y--------EALLTRSLRKFFPALAEVPIAASWNGPSDRS--VTGLPF----FGRLNGQPNVFYGFGYSGNGVAPSRMGG 384 (460)
T ss_pred H--------HHHHHHHHHHhCCCcCCCeeeEEEeceeCCC--CCCCce----eeeecCCCCEEEEeCcCCCChhHHHHHH
Confidence 1 1234478899999999999999999999886 888775 654 4799999999999999999999
Q ss_pred HHHHHHHHhh
Q psy3952 234 KHILNELRRE 243 (252)
Q Consensus 234 ~~va~~i~~~ 243 (252)
+.+|++|.+.
T Consensus 385 ~~lA~li~g~ 394 (460)
T TIGR03329 385 QILSSLVLGL 394 (460)
T ss_pred HHHHHHhcCC
Confidence 9999999763
No 23
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.88 E-value=4.5e-22 Score=187.90 Aligned_cols=192 Identities=12% Similarity=0.079 Sum_probs=140.1
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ 81 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~ 81 (252)
.+.+++ |++++++++|++++.++++|.|.|++|..+.|+.||+|+|+|+..+..+. .+|+.|+||+++.++....
T Consensus 415 ~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~~~----~lpl~p~RGqv~~~~~~~~ 489 (662)
T PRK01747 415 LALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAARFAQTA----HLPLYSVRGQVSHLPTTPA 489 (662)
T ss_pred HHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcccccccc----CCCcccccceEEeecCCcc
Confidence 456667 99999999999999888889999988855789999999999998886543 5789999999988864311
Q ss_pred ccccceeecCCCCCCCCceeEEEE-ecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHHH
Q psy3952 82 HLVRGNIYPVPDPNFPFLGVHFTP-RMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEM 160 (252)
Q Consensus 82 ~~~~~~i~~~~~~~~~~~~~~~~~-~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (252)
.. .+...+ ..+.|++| ..+|.+++|.+.+.. +... ..+. +...
T Consensus 490 ~~-------~~~~~~-~~~~Y~~p~~~~g~~~iGat~~~~----~~~~-~~~~---------------------~~~~-- 533 (662)
T PRK01747 490 LS-------ALKQVL-CYDGYLTPQPANGTHCIGASYDRD----DTDT-AFRE---------------------ADHQ-- 533 (662)
T ss_pred cc-------ccCcee-ECCceeCCCCCCCceEeCcccCCC----CCCC-CCCH---------------------HHHH--
Confidence 00 000000 12357888 678899999775431 1111 1111 1222
Q ss_pred HhhhChhHHHHHHHHhccCC-----CCCCceecCCcceeEeecCCCCcccceEE---------------------EecCC
Q psy3952 161 IMSWFPSMRVNELKQYIEEI-----EAGDIQRGPSGVRAQALSSSGDLVDDFVF---------------------HSAGR 214 (252)
Q Consensus 161 ~~~~~~~~~~~~~~~~~P~l-----~~~~i~~~w~G~rp~~~~~d~~p~~~~~i---------------------~~~~~ 214 (252)
.+++.+.+++|.+ .+.++.+.|+|+||.+ ||+.|+.+.+. ...+|
T Consensus 534 -------~~~~~l~~~~P~l~~~~~~~~~~~~~~aG~R~~t--pD~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~~~~g 604 (662)
T PRK01747 534 -------ENLERLAECLPQALWAKEVDVSALQGRVGFRCAS--RDRLPMVGNVPDEAATLAEYAALANQQPARDAPRLPG 604 (662)
T ss_pred -------HHHHHHHHhCCCchhhhccCccccCceEEEeccC--CCcccccCCCCCHHHHHHHHHhhhhccccccCCCCCC
Confidence 3347788999987 4567788999999987 89888644421 11479
Q ss_pred eEEEeccCCccccchHHHHHHHHHHHHhh
Q psy3952 215 TLHCRNAPSPAATSSLAIAKHILNELRRE 243 (252)
Q Consensus 215 ~~~~~G~~~~G~t~a~~~g~~va~~i~~~ 243 (252)
+|+++|++|+|+++||.+|+.+|++|.+.
T Consensus 605 l~v~~G~gs~Gl~~ap~~a~~lA~li~g~ 633 (662)
T PRK01747 605 LYVAGALGSRGLCSAPLGAELLASQIEGE 633 (662)
T ss_pred eEEEecccccHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999765
No 24
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.88 E-value=3e-21 Score=170.85 Aligned_cols=199 Identities=10% Similarity=0.028 Sum_probs=135.7
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ 81 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~ 81 (252)
.+.++++|++++++++|++++.+++++.|.|++| ++.|++||+|+|+|+..+++++|+ .+|+.|.+++...+.....
T Consensus 152 ~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~--~~~~~~~~~~~~~~~~~~~ 228 (380)
T TIGR01377 152 QELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGI--EIPLQPLRINVCYWREKEP 228 (380)
T ss_pred HHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhccc--CCCceEEEEEEEEEecCCc
Confidence 4567889999999999999998888888999888 899999999999999999999886 5788999988766542211
Q ss_pred ccc----cceeecCCCCCCCCceeEEEEecCC-cEEEcccceec-ccccCccc-cccchhHHhhhhcCCCccccchhhhh
Q psy3952 82 HLV----RGNIYPVPDPNFPFLGVHFTPRMDG-SVWLGPNAVLA-FKKEGYRW-RDFSVRELFSTLRYPGFWRLGLKYTR 154 (252)
Q Consensus 82 ~~~----~~~i~~~~~~~~~~~~~~~~~~~~g-~~~iG~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (252)
... ....+..... ...+|+.|..++ .++++...... ..++.... ...+ .
T Consensus 229 ~~~~~~~~~p~~~~~~~---~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~ 284 (380)
T TIGR01377 229 GSYGVSQAFPCFLVLGL---NPHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPFGAD---------------------I 284 (380)
T ss_pred cccCccCCCCEEEEeCC---CCceEecCCCCCCceEEEEeCCCCccCcccccCCCCCC---------------------H
Confidence 100 0001100111 124666776432 35555321100 00000000 0000 0
Q ss_pred hhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec---CCeEEEeccCCccccchHH
Q psy3952 155 YGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA---GRTLHCRNAPSPAATSSLA 231 (252)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~---~~~~~~~G~~~~G~t~a~~ 231 (252)
+.++ .+.+.+.+++|.|.... .+.|.|+||.+ ||+.| +|++. +|+|+++|++|+||++||+
T Consensus 285 ~~~~---------~l~~~~~~~~P~l~~~~-~~~~~~~~~~t--~D~~p----iIg~~p~~~~l~va~G~~g~G~~~~p~ 348 (380)
T TIGR01377 285 EDVQ---------ILRKFVRDHLPGLNGEP-KKGEVCMYTNT--PDEHF----VIDLHPKYDNVVIGAGFSGHGFKLAPV 348 (380)
T ss_pred HHHH---------HHHHHHHHHCCCCCCCc-ceeeEEEeccC--CCCCe----eeecCCCCCCEEEEecCCccceeccHH
Confidence 2233 34478999999998544 46799999765 88865 57764 6999999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy3952 232 IAKHILNELRRE 243 (252)
Q Consensus 232 ~g~~va~~i~~~ 243 (252)
+|+.++|+|.+.
T Consensus 349 ~g~~la~li~~~ 360 (380)
T TIGR01377 349 VGKILAELAMKL 360 (380)
T ss_pred HHHHHHHHHhcC
Confidence 999999999764
No 25
>KOG2844|consensus
Probab=99.87 E-value=1.3e-21 Score=175.84 Aligned_cols=205 Identities=14% Similarity=0.123 Sum_probs=145.8
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA 79 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~ 79 (252)
|+.+|++.||.|.++|+|++|....++ +.|+|..| .|+|.+||||||.|++.+..|.|+ ..|+.|+.++|+++++-
T Consensus 193 la~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gv--kvPL~p~~H~YvvT~~I 269 (856)
T KOG2844|consen 193 LARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAGV--KVPLVPMHHAYVVTSRI 269 (856)
T ss_pred HHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcCC--cccceeeeeeEEEeccc
Confidence 467899999999999999999976655 57999999 999999999999999999999996 69999999999998753
Q ss_pred ccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHH
Q psy3952 80 KQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE 159 (252)
Q Consensus 80 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (252)
. .+.. .+.|..+-....+|++.. .+.+..|+........++..+..+.. +- -.+|+ ..
T Consensus 270 e--Gi~s--~t~p~irD~DgSvylR~~-~~gil~GGyE~n~i~~egv~~~~~~~------lq-E~DWd--------~F-- 327 (856)
T KOG2844|consen 270 E--GVSS--LTRPNIRDLDGSVYLRQQ-GDGILFGGYESNPIFTEGVPPGFATG------LQ-EPDWD--------HF-- 327 (856)
T ss_pred C--CccC--CCccceecccceEEEEec-CCceeccccccCceeccccCCccccc------cc-cccHh--------hh--
Confidence 1 1111 111121111334566654 44567776533211111111100000 00 01332 11
Q ss_pred HHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec---CCeEEEeccCCccccchHHHHHHH
Q psy3952 160 MIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA---GRTLHCRNAPSPAATSSLAIAKHI 236 (252)
Q Consensus 160 l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~---~~~~~~~G~~~~G~t~a~~~g~~v 236 (252)
+..++.+.+++|.|++..|.+..+|.. +++||.+|. ++++ .|+|++.|+++.|++++.++|+.+
T Consensus 328 -------~~hlesai~r~P~l~k~~i~~~v~gpe--~ftPD~~p~----mGe~p~~~gy~v~~G~ns~G~~~~GG~Gk~l 394 (856)
T KOG2844|consen 328 -------EPHLEAAIERVPVLEKAGIKSLVNGPE--TFTPDHLPI----MGESPEVRGYWVACGFNSAGLSFGGGCGKYL 394 (856)
T ss_pred -------HHHHHHHHHhCchhhhcCccceecCcc--ccCCccccc----cCCCccccceEEeecCCccceeccCchhHHH
Confidence 233478888999999999999999954 556998875 6665 499999999999999999999999
Q ss_pred HHHHHhh
Q psy3952 237 LNELRRE 243 (252)
Q Consensus 237 a~~i~~~ 243 (252)
++||.+.
T Consensus 395 a~wi~~g 401 (856)
T KOG2844|consen 395 AEWIIHG 401 (856)
T ss_pred HHHhhcC
Confidence 9999854
No 26
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.86 E-value=3e-21 Score=170.18 Aligned_cols=186 Identities=15% Similarity=0.181 Sum_probs=127.0
Q ss_pred hhHHHhC-CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCc
Q psy3952 2 GEEFCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK 80 (252)
Q Consensus 2 ~~~a~~~-G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~ 80 (252)
++.+.++ |++|+++++|++|+.. .|.|++| .+.|++||||+|+|+..|...++. ++++.|+|++.+.+++..
T Consensus 152 ~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~~~--~~~~~p~~~q~~~~~p~~ 224 (365)
T TIGR03364 152 AAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFETLFPELFA--ASGVRRCKLQMMRTAPQP 224 (365)
T ss_pred HHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChhhhCcchhh--ccCcceEEEEeeeccCCC
Confidence 3455665 9999999999999743 6888889 799999999999999998766654 578899999998887532
Q ss_pred cccccceee--------------------------cCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchh
Q psy3952 81 QHLVRGNIY--------------------------PVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVR 134 (252)
Q Consensus 81 ~~~~~~~i~--------------------------~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~ 134 (252)
...+...+. +.|.......+++++|+.+|++++|++.+.....+.+ +..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~-----~~~ 299 (365)
T TIGR03364 225 RLPLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQNPDGELIIGDSHEYGLAPDPF-----DDE 299 (365)
T ss_pred CCcCCccccccceeeechhHhhCcchHHHHhhhcccCchhhhcCeEEEEEECCCCCEEecCcccccCCCCCc-----chH
Confidence 100111000 0011000123578899999999999875432110000 000
Q ss_pred HHhhhhcCCCccccchhhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe-cC
Q psy3952 135 ELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS-AG 213 (252)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~-~~ 213 (252)
+..+ .+.+.+.+++ .|++.++.+.|+|+||++ ||..|+ ++. .+
T Consensus 300 --------------------~~~~---------~l~~~~~~~~-~l~~~~~~~~w~G~r~~t--~d~~~v----~~~~~~ 343 (365)
T TIGR03364 300 --------------------EIDN---------LILAEAKTIL-GLPDLDIVERWQGVYASS--PPAPIF----LERPDD 343 (365)
T ss_pred --------------------HHHH---------HHHHHHHHhc-CCCCCceEEEEeEEecCC--CCCCce----ecCCCC
Confidence 1111 2235566665 788889999999999986 675443 433 48
Q ss_pred CeEEEeccCCccccchHHHHHH
Q psy3952 214 RTLHCRNAPSPAATSSLAIAKH 235 (252)
Q Consensus 214 ~~~~~~G~~~~G~t~a~~~g~~ 235 (252)
|+|+++|++|+|+++||++|++
T Consensus 344 g~~~a~G~~g~G~~~ap~~~~~ 365 (365)
T TIGR03364 344 GVTVVVVTSGAGMTLSFGLAEE 365 (365)
T ss_pred CeEEEEecCCCcccccccccCC
Confidence 9999999999999999999863
No 27
>KOG2853|consensus
Probab=99.81 E-value=8.2e-19 Score=147.51 Aligned_cols=207 Identities=14% Similarity=0.112 Sum_probs=139.1
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCe--------------------EEEEeCCC--cEEEcCEEEEcCCCChHHHHHHcC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPES--------------------VTISTKQG--DHLESSYALVCAGLQADEMALKSG 59 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~--------------------~~V~t~~g--~~i~A~~VV~AaG~ws~~l~~~~g 59 (252)
.+.|...|+.+..+ +|++++.+..+ +.|.-+++ .++++..+|||||+||.++++++|
T Consensus 250 rrk~~~lGv~f~~G-eV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s~QvArlAg 328 (509)
T KOG2853|consen 250 RRKAITLGVQFVKG-EVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWSGQVARLAG 328 (509)
T ss_pred HHHhhhhcceEecc-eEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccHHHHHHHhc
Confidence 46688899999865 79998865221 22333332 469999999999999999999986
Q ss_pred CC-------CCCceeeeeeEEEEeCCCccccccceeecCCCCCCCCceeEEEEec-CCcEEEcccceecccccCcccccc
Q psy3952 60 CS-------LEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRM-DGSVWLGPNAVLAFKKEGYRWRDF 131 (252)
Q Consensus 60 ~~-------~~~~~~p~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~g~~~iG~~~~~~~~~~~~~~~~~ 131 (252)
+. .++|+.|.|-+.++...+..+... +|... .-.|+|++++. .|+++.|-+-.. +...++...++
T Consensus 329 IG~g~g~L~vplPiepRKRyvyvi~~~~~PGl~-----~Pl~i-DpsG~f~Rrdglg~nfl~grsp~e-d~~~d~~nldV 401 (509)
T KOG2853|consen 329 IGKGPGLLAVPLPIEPRKRYVYVIFAPDVPGLD-----TPLTI-DPSGVFFRRDGLGGNFLCGRSPSE-DEEPDHSNLDV 401 (509)
T ss_pred cCCCCceeeecccCCccceeEEEEeCCCCCCCC-----CceeE-CCCccEEEecCCCCceecccCCcc-ccCCCcccccc
Confidence 53 357888988887776543212111 11111 12488888874 567787733111 11123332233
Q ss_pred chhHHhhhhcCCCccccchhhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe
Q psy3952 132 SVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS 211 (252)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~ 211 (252)
|.+.+ -+.+.-.+...+|.++..++...|+|..... +-| ...+|++
T Consensus 402 D~d~F-----------------------------~qkiwP~L~nRVP~fetakVqsaWaGyyD~N-tfD----~ngViG~ 447 (509)
T KOG2853|consen 402 DHDYF-----------------------------YQKIWPHLANRVPAFETAKVQSAWAGYYDHN-TFD----DNGVIGE 447 (509)
T ss_pred ChHHH-----------------------------HhhhhHHHHhcccccceeeeeehhccccccc-ccc----cCCcccC
Confidence 33221 1233356777899999999999999977543 223 3456888
Q ss_pred cC---CeEEEeccCCccccchHHHHHHHHHHHHhh----ccccccc
Q psy3952 212 AG---RTLHCRNAPSPAATSSLAIAKHILNELRRE----FKLDELS 250 (252)
Q Consensus 212 ~~---~~~~~~G~~~~G~t~a~~~g~~va~~i~~~----~~~~~~~ 250 (252)
+| |++.++||+|||+..+|++|+.++|+|.+. ++|++|+
T Consensus 448 HP~y~Nly~atGFsghGvqqs~avgRAiaElIldG~f~tidLsrf~ 493 (509)
T KOG2853|consen 448 HPLYTNLYMATGFSGHGVQQSPAVGRAIAELILDGAFITIDLSRFD 493 (509)
T ss_pred CcceeeeeeeecccccchhcchHHHHHHHHHHhcCceeEEeccccc
Confidence 86 999999999999999999999999999864 6666654
No 28
>KOG0042|consensus
Probab=99.73 E-value=3.2e-17 Score=144.93 Aligned_cols=208 Identities=15% Similarity=0.144 Sum_probs=145.0
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCe-E---E---EEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEE
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPES-V---T---ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYL 74 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~-~---~---V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~ 74 (252)
+-.|.++||.+.++.+|.++.+++++ + . ..|++...|+|+.||||+|+.++.|.+|-....+.-+.|..|.|+
T Consensus 231 AlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~~~i~~pSsGvHI 310 (680)
T KOG0042|consen 231 ALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKMDDEDAKPICVPSSGVHI 310 (680)
T ss_pred HHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhhcccccCceeccCCceeE
Confidence 34578999999999999998876543 2 2 346666779999999999999999999876433444689999999
Q ss_pred EeCCCccccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhh
Q psy3952 75 LLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTR 154 (252)
Q Consensus 75 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (252)
+++.-..+.--+.+-|.-. .+.-+++.| +.|..+.|+|..+..-.....+ ++
T Consensus 311 VlP~yY~P~~mGlldP~Ts---DgRViFflP-Wqg~TIaGTTD~pt~v~~~P~P------------------------tE 362 (680)
T KOG0042|consen 311 VLPGYYCPENMGLLDPKTS---DGRVIFFLP-WQGKTIAGTTDIPTSVTHSPTP------------------------TE 362 (680)
T ss_pred EcccccCCcccccccCCCC---CCcEEEEec-cCCceeeccCCCCCCCCCCCCC------------------------CH
Confidence 9974221111111111111 133445555 6789999988765321111111 12
Q ss_pred hhhHHHHhhhChhHHHHHHHHhc---cCCCCCCceecCCcceeEeecCCC-----CcccceEEEe-cCCeEEEeccCCcc
Q psy3952 155 YGSKEMIMSWFPSMRVNELKQYI---EEIEAGDIQRGPSGVRAQALSSSG-----DLVDDFVFHS-AGRTLHCRNAPSPA 225 (252)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~~~~---P~l~~~~i~~~w~G~rp~~~~~d~-----~p~~~~~i~~-~~~~~~~~G~~~~G 225 (252)
++++ +++++++.++ +.++.+++...|+|+||+..+|+. ...+++++.. .+|++.++|..
T Consensus 363 ~dIq---------fIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~~gLiTIaGGK--- 430 (680)
T KOG0042|consen 363 DDIQ---------FILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSPSGLITIAGGK--- 430 (680)
T ss_pred HHHH---------HHHHHHHHhhCCCcccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecCCCeEEEecCc---
Confidence 4455 4458888887 248889999999999999988732 1234555554 46999999876
Q ss_pred ccchHHHHHHHHHHHHhhcccccc
Q psy3952 226 ATSSLAIAKHILNELRREFKLDEL 249 (252)
Q Consensus 226 ~t~a~~~g~~va~~i~~~~~~~~~ 249 (252)
||+.+.+||...+.+.+..++...
T Consensus 431 WTTyR~MAEeTVd~aI~~~~lk~~ 454 (680)
T KOG0042|consen 431 WTTYRHMAEETVDAAIKAGDLKPA 454 (680)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999988887763
No 29
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.71 E-value=3.9e-16 Score=137.18 Aligned_cols=234 Identities=22% Similarity=0.303 Sum_probs=157.6
Q ss_pred hhHHHhC-CcEEEeCceeEEEEEcCCe-EEEEe-----CCCcEEEcCEEEEcCCCChHHHHHHcCCC--CCCceeeeeeE
Q psy3952 2 GEEFCEL-GGEIRLNQQVESFKENPES-VTIST-----KQGDHLESSYALVCAGLQADEMALKSGCS--LEPAIVPFRGE 72 (252)
Q Consensus 2 ~~~a~~~-G~~i~~~~~V~~i~~~~~~-~~V~t-----~~g~~i~A~~VV~AaG~ws~~l~~~~g~~--~~~~~~p~~g~ 72 (252)
.+.+++. |++++.+++|++|++.+++ |.|.+ .+..++.|+.|++.||++|-.|+++.|++ ..+-..|+.|+
T Consensus 188 ~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gyggfPVsG~ 267 (488)
T PF06039_consen 188 VEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYGGFPVSGQ 267 (488)
T ss_pred HHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhcccCCCcccce
Confidence 4566666 9999999999999998765 98764 22247999999999999999999999974 35677899999
Q ss_pred EEEeCCCc-cccccceeecCCCC-CCCCceeEEEEe-cCC--cEEEcccceeccc--ccCccc---cccchhHHhhhhcC
Q psy3952 73 YLLLNPAK-QHLVRGNIYPVPDP-NFPFLGVHFTPR-MDG--SVWLGPNAVLAFK--KEGYRW---RDFSVRELFSTLRY 142 (252)
Q Consensus 73 ~~~~~~~~-~~~~~~~i~~~~~~-~~~~~~~~~~~~-~~g--~~~iG~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~ 142 (252)
+++++.+. ...-++.||....+ .-|+.-.|+.++ .+| .+++||++.+.+. +.+.-. .++.+.++..++.
T Consensus 268 fl~~~n~~vv~~H~aKVYgka~vGaPPmSvPHlDtRiidGk~~llFGP~Agfs~KfLK~GS~~Dl~~S~~~~N~~~ml~- 346 (488)
T PF06039_consen 268 FLRCKNPEVVAQHNAKVYGKASVGAPPMSVPHLDTRIIDGKKSLLFGPFAGFSPKFLKNGSYLDLFKSLRPDNLFPMLA- 346 (488)
T ss_pred EEecCCHHHHHHhcceeeeeCCCCCCCccCccCCchhcCCCcceeecCccccchHHhcCCcHHHHHhhcCcccHHHHHH-
Confidence 99997542 11125677876553 235666676665 355 5889999876532 333211 1233344444332
Q ss_pred CCccccchhhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCc--c---cceEEEecCCeEE
Q psy3952 143 PGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDL--V---DDFVFHSAGRTLH 217 (252)
Q Consensus 143 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p--~---~~~~i~~~~~~~~ 217 (252)
.+..++.+. ...+.+++ ++.+..++++++++|.++.+++.-..+|+|++.+.+|..- + .--+|....|.+.
T Consensus 347 ~~~~n~~L~--kYLi~q~~--~s~~~r~~~Lr~f~P~a~~~DW~l~~AGqRvQiIkk~~~kgG~L~fGTevI~s~dGsia 422 (488)
T PF06039_consen 347 VGLDNFDLT--KYLIGQVL--QSKEDRMEALRKFYPSAKPEDWELITAGQRVQIIKKDEKKGGVLQFGTEVITSADGSIA 422 (488)
T ss_pred HHhhhhhHH--HHHHHhhc--cCHHHHHHHHHHhCccCChhceEEEecCceeeEEecCCCCCcEEecCceEEecCCCceE
Confidence 122222221 12233333 4567778999999999999999999999999999766321 1 1113444578777
Q ss_pred EeccCCccccchHHHHHHHHHHH
Q psy3952 218 CRNAPSPAATSSLAIAKHILNEL 240 (252)
Q Consensus 218 ~~G~~~~G~t~a~~~g~~va~~i 240 (252)
+.=..|||.++|..+.-.+.+.+
T Consensus 423 aLLGASPGASTav~iMl~vl~~c 445 (488)
T PF06039_consen 423 ALLGASPGASTAVSIMLDVLERC 445 (488)
T ss_pred eeccCCCChhhhHHHHHHHHHHH
Confidence 65457899999998866555543
No 30
>KOG3923|consensus
Probab=99.65 E-value=7.1e-16 Score=127.64 Aligned_cols=177 Identities=21% Similarity=0.249 Sum_probs=124.6
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCcc
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ 81 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~ 81 (252)
.+...++|+++.+ .+|++++.-. + =.+|.||||+|.|+..|+ |.+ .++|+||+++.++.
T Consensus 158 ~k~l~e~Gvef~~-r~v~~l~E~~--------~---~~~DVivNCtGL~a~~L~---gDd---~~yPiRGqVl~V~A--- 216 (342)
T KOG3923|consen 158 KKRLTENGVEFVQ-RRVESLEEVA--------R---PEYDVIVNCTGLGAGKLA---GDD---DLYPIRGQVLKVDA--- 216 (342)
T ss_pred HHHHHhcCcEEEE-eeeccHHHhc--------c---CCCcEEEECCcccccccc---CCc---ceeeccceEEEeeC---
Confidence 3456778888765 4677665321 1 257999999999999885 642 38999999999975
Q ss_pred ccccceeecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHHHH
Q psy3952 82 HLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMI 161 (252)
Q Consensus 82 ~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (252)
+.+++.+|. + +.+.|++|. .+++.+|++..+ .+++. .+.. ++..
T Consensus 217 pWvkhf~~~--D----~~~ty~iP~-~~~V~lGg~~Q~----g~w~~-ei~~---------------------~D~~--- 260 (342)
T KOG3923|consen 217 PWVKHFIYR--D----FSRTYIIPG-TESVTLGGTKQE----GNWNL-EITD---------------------EDRR--- 260 (342)
T ss_pred CceeEEEEe--c----CCccEEecC-CceEEEcccccc----CcccC-cCCh---------------------hhHH---
Confidence 456676664 2 223466764 567899987553 23332 1111 2222
Q ss_pred hhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEe------c--CCeEEEeccCCccccchHHHH
Q psy3952 162 MSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHS------A--GRTLHCRNAPSPAATSSLAIA 233 (252)
Q Consensus 162 ~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~------~--~~~~~~~G~~~~G~t~a~~~g 233 (252)
.+++....+.|+|...+|++.|+|+||.- +. + -++. . .-+++..|++|.|+|+++++|
T Consensus 261 ------dIl~rc~aL~P~l~~a~ii~E~vGlRP~R--k~---v---RlE~e~~~~~~k~~~VVHnYGHgG~G~Tl~wGtA 326 (342)
T KOG3923|consen 261 ------DILERCCALEPSLRHAEIIREWVGLRPGR--KQ---V---RLEAELRTRGGKRLTVVHNYGHGGNGFTLGWGTA 326 (342)
T ss_pred ------HHHHHHHHhCcccccceehhhhhcccCCC--Cc---e---eeeeeeecCCCccceeEeeccCCCCceecccchH
Confidence 34588999999999999999999999864 11 1 1221 1 245899999999999999999
Q ss_pred HHHHHHHHhhcccccc
Q psy3952 234 KHILNELRREFKLDEL 249 (252)
Q Consensus 234 ~~va~~i~~~~~~~~~ 249 (252)
-..+.++...++.+.|
T Consensus 327 lea~~Lv~~~l~~~kl 342 (342)
T KOG3923|consen 327 LEAAKLVLDALGASKL 342 (342)
T ss_pred HHHHHHHHHHhhhccC
Confidence 9999999888776654
No 31
>KOG2820|consensus
Probab=99.64 E-value=1.1e-14 Score=122.64 Aligned_cols=200 Identities=13% Similarity=0.114 Sum_probs=116.0
Q ss_pred hHHHhCCcEEEeCceeEEEEE---cCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHH-cCCCCCCceeeeeeE--EEEe
Q psy3952 3 EEFCELGGEIRLNQQVESFKE---NPESVTISTKQGDHLESSYALVCAGLQADEMALK-SGCSLEPAIVPFRGE--YLLL 76 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~---~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~-~g~~~~~~~~p~~g~--~~~~ 76 (252)
..|++.|+.++.+.+|+.++. ++..+.|.|.+|..+.|+.+|+++|+|...+++. +++ ..|+.|.+=. ++..
T Consensus 161 ~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~--~~Pv~~i~ltvcywk~ 238 (399)
T KOG2820|consen 161 DKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAI--GFPVAPIQLTVCYWKT 238 (399)
T ss_pred HHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCccccc--CCccceeEeehhhhee
Confidence 457899999999999999885 3445779999996699999999999999999874 444 4666665422 1111
Q ss_pred CCCcc-c-cccceee---cCCCCCCCCceeEEEEec--CCcEEEcc----cceecccccCccccccchhHHhhhhcCCCc
Q psy3952 77 NPAKQ-H-LVRGNIY---PVPDPNFPFLGVHFTPRM--DGSVWLGP----NAVLAFKKEGYRWRDFSVRELFSTLRYPGF 145 (252)
Q Consensus 77 ~~~~~-~-~~~~~i~---~~~~~~~~~~~~~~~~~~--~g~~~iG~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (252)
-.... . ......+ |.|+..+ -.|..|.. .|...+.- .+.+ .+++.....+ .
T Consensus 239 ~~~~~~~l~~d~~f~~F~~~~~~~~---~~ya~p~~eYpg~~k~~yh~g~~v~~-~~~~~p~~~s-------------~- 300 (399)
T KOG2820|consen 239 KKNMPVYLFDDDCFYAFPPYPDTKL---IKYALPGYEYPGLMKVDYHEGSKVVP-IDPDGPPKRS-------------L- 300 (399)
T ss_pred ecCCceeecCCCCceeccCCCCcce---EEeccCCCCCcceEEEeecCCCcCCC-CCCCCCcccC-------------c-
Confidence 11000 0 0000001 1111100 01111111 11111110 0000 0011111000 0
Q ss_pred cccchhhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEecC---CeEEEeccC
Q psy3952 146 WRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAG---RTLHCRNAP 222 (252)
Q Consensus 146 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~~---~~~~~~G~~ 222 (252)
..+++. +.+..+.+.|.+++..... .+ .|-..++|+.+|+|+.+| |++++.|++
T Consensus 301 --------~~~idl---------~~~f~~~~~p~l~~~~p~~----t~--~C~YT~TpD~~FviD~~P~~~Nv~Vg~G~S 357 (399)
T KOG2820|consen 301 --------PKAIDL---------MRRFLRTFGPDLDDRSPIN----TK--MCMYTDTPDANFVIDKHPQYDNVFVGGGGS 357 (399)
T ss_pred --------chHHHH---------HHHHHHHhCccccCCCcce----ee--EEEeeCCCCcCeeeecCCCcccEEEecCCC
Confidence 012322 2356778889998554432 12 222456788899999865 999999999
Q ss_pred CccccchHHHHHHHHHHHHhhcc
Q psy3952 223 SPAATSSLAIAKHILNELRREFK 245 (252)
Q Consensus 223 ~~G~t~a~~~g~~va~~i~~~~~ 245 (252)
||||+++|++|+.+++++.+.+.
T Consensus 358 GHGFK~aP~iGk~lae~~~~~~~ 380 (399)
T KOG2820|consen 358 GHGFKFAPNIGKYLAEMAMGDLS 380 (399)
T ss_pred CcceeecchHHHHHHHHhhhccc
Confidence 99999999999999999987643
No 32
>KOG2852|consensus
Probab=99.08 E-value=4.8e-09 Score=87.21 Aligned_cols=198 Identities=10% Similarity=0.008 Sum_probs=107.1
Q ss_pred hhHHHhC-CcEEEeCceeEEEEEcCCeEE-E-Ee---CCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEE
Q psy3952 2 GEEFCEL-GGEIRLNQQVESFKENPESVT-I-ST---KQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLL 75 (252)
Q Consensus 2 ~~~a~~~-G~~i~~~~~V~~i~~~~~~~~-V-~t---~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~ 75 (252)
++.|++. ||+++.+ +|.++..+.++.. | .. .......++++|+++|+|+..|....++ .-.+-..+.
T Consensus 154 ~sea~k~~~V~lv~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~~rI------sglrihsI~ 226 (380)
T KOG2852|consen 154 LSEAEKRGGVKLVFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPFTRI------SGLRIHSIT 226 (380)
T ss_pred HHHHHhhcCeEEEEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchhhcccccc------ceeeeeeEE
Confidence 3455555 5998886 6888864444432 2 11 1133577889999999999998654432 333333444
Q ss_pred eCCCccccccceeecC--CCCCC--CCceeEEEEecCC-cEEEcccceecccccCccccccchhHHhhhhcCCCccccch
Q psy3952 76 LNPAKQHLVRGNIYPV--PDPNF--PFLGVHFTPRMDG-SVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGL 150 (252)
Q Consensus 76 ~~~~~~~~~~~~i~~~--~~~~~--~~~~~~~~~~~~g-~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (252)
+++...+.-...++.. +..++ -.+-+|.+ .++ .+++|.+.....-+++.+...+++.+
T Consensus 227 l~~~e~~v~~~avf~~l~~~~g~ei~~pe~y~r--kd~Evyicg~~~~e~~lPedsd~v~~npek--------------- 289 (380)
T KOG2852|consen 227 LSPGEKPVGPSAVFCELNTMDGLEICKPEEYAR--KDREVYICGETDKEHLLPEDSDDVFVNPEK--------------- 289 (380)
T ss_pred ecCCCCCCCCceEEEEEEeCCCccccCcceeec--CCceEEEecCCCccccCCcccccceeCHHH---------------
Confidence 5443211111112111 11110 01223433 343 45566554433223333322223322
Q ss_pred hhhhhhhHHHHhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEec-CCeEEEeccCCccccch
Q psy3952 151 KYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSA-GRTLHCRNAPSPAATSS 229 (252)
Q Consensus 151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~-~~~~~~~G~~~~G~t~a 229 (252)
+..+ .+.+..+.+.+....+...=+=.-|.+.. .|.| +|+.. .++|+++||+==|+|.+
T Consensus 290 ------i~~L---------k~~a~~v~s~l~ks~v~~~qacfLP~sn~-tg~P----vIget~sg~yVaagHscWGItna 349 (380)
T KOG2852|consen 290 ------IIEL---------KEMADLVSSELTKSNVLDAQACFLPTSNI-TGIP----VIGETKSGVYVAAGHSCWGITNA 349 (380)
T ss_pred ------HHHH---------HHHHHHhhhhhccchhhhhhhccccccCC-CCCc----eEeecCCceEEeecccccceecC
Confidence 2222 24455555666666554432223444321 2444 58764 49999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy3952 230 LAIAKHILNELRRE 243 (252)
Q Consensus 230 ~~~g~~va~~i~~~ 243 (252)
|++|+.||++|.+.
T Consensus 350 PaTG~~mAEllldg 363 (380)
T KOG2852|consen 350 PATGKCMAELLLDG 363 (380)
T ss_pred cchhHHHHHHHhcc
Confidence 99999999999864
No 33
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.46 E-value=3.6e-05 Score=65.36 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=46.9
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEe-CCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTIST-KQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t-~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
.+.+++.|++++.+++|+++..+++++++.. .++.+++||.||.|+|.++. +.++++..
T Consensus 98 ~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~-~~~~~~~~ 157 (295)
T TIGR02032 98 AERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSI-VAKKLGLR 157 (295)
T ss_pred HHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchH-HHHhcCCC
Confidence 4667888999999999999998887766543 23337999999999999984 77777753
No 34
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.45 E-value=4.8e-06 Score=75.27 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=48.0
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
|.+.|++.|++++.+++|++++.+++++. |.++.+ ++.|+.||.|+|.++ .+++.+|+.
T Consensus 114 L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~-~i~A~~VI~A~G~~s-~l~~~lgl~ 173 (428)
T PRK10157 114 LMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGD-VIEAKTVILADGVNS-ILAEKLGMA 173 (428)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCc-EEECCEEEEEeCCCH-HHHHHcCCC
Confidence 35678889999999999999988777764 555544 899999999999976 577788763
No 35
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.30 E-value=6.9e-05 Score=66.77 Aligned_cols=59 Identities=15% Similarity=0.304 Sum_probs=51.4
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
.+.+++.|++++.+++|++++.++++++|++++|.+++|+.||.|.|.|| .+.+.+|+.
T Consensus 120 ~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S-~vr~~~g~~ 178 (392)
T PRK08773 120 WAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS-TLRELAGLP 178 (392)
T ss_pred HHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc-hHHHhhcCC
Confidence 45677889999999999999998888888887776899999999999999 588888864
No 36
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.26 E-value=0.00011 Score=65.10 Aligned_cols=59 Identities=14% Similarity=0.208 Sum_probs=50.2
Q ss_pred hhHHHhCC-cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 2 GEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 2 ~~~a~~~G-~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
.+.+.+.| ++++.+++|++++.+++++.|++.+|.++.||.||.|.|.+|. +.+.++.+
T Consensus 113 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~-vr~~l~~~ 172 (385)
T TIGR01988 113 WERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK-VRQLAGIP 172 (385)
T ss_pred HHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH-HHHHcCCC
Confidence 45677777 9999999999999888888888888867999999999999985 76777753
No 37
>PLN02697 lycopene epsilon cyclase
Probab=98.25 E-value=7.6e-05 Score=69.02 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=53.6
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNP 78 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~ 78 (252)
.+.+.++|+++ .+++|+++..+++++. +.+.+|.++.|+.||.|+|.|+..+..........+.+...|..+.++.
T Consensus 199 l~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~~~~~Q~a~Gi~ve~~~ 275 (529)
T PLN02697 199 LRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGPRVCVQTAYGVEVEVEN 275 (529)
T ss_pred HHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCCCcccEEEEEEEEEecC
Confidence 45677889998 5689999988777765 4455565899999999999999655431110113446778888877753
No 38
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.22 E-value=0.00016 Score=64.31 Aligned_cols=73 Identities=11% Similarity=0.021 Sum_probs=51.4
Q ss_pred hhHHHhCCcEEEeCceeEEEEEc-CCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKEN-PESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLN 77 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~ 77 (252)
.+.+++.|++++ .++|++++.+ ++.+.|++++|.+++|+.||.|+|.++ .+ +..............|..+.++
T Consensus 92 ~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s-~~-~~~~~~~~~~~q~~~G~~~~~~ 165 (388)
T TIGR01790 92 LQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP-LV-QYVRFPLNVGFQVAYGVEARLS 165 (388)
T ss_pred HHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch-hc-ccccCCCCceEEEEEEEEEEEc
Confidence 456777899986 5689998877 566888888876899999999999998 22 2111111334455677777665
No 39
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.18 E-value=6e-06 Score=73.68 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=50.1
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCC--cEEEcCEEEEcCCCC-hHHHHHHcC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQG--DHLESSYALVCAGLQ-ADEMALKSG 59 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g--~~i~A~~VV~AaG~w-s~~l~~~~g 59 (252)
|.+.++++|++++.+++|+++..++++++ |.|.++ ..++||+||+|+|+| |..|.+.++
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l~ 331 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEFD 331 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhcC
Confidence 35678899999999999999998888765 776654 379999999999999 999977664
No 40
>PRK06185 hypothetical protein; Provisional
Probab=98.13 E-value=0.00022 Score=63.81 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=51.6
Q ss_pred hHHHh-CCcEEEeCceeEEEEEcCCeE---EEEeCCC-cEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEe
Q psy3952 3 EEFCE-LGGEIRLNQQVESFKENPESV---TISTKQG-DHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL 76 (252)
Q Consensus 3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~---~V~t~~g-~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~ 76 (252)
+.+++ .|++++.+++|++++.+++++ .+.+.+| .+++|+.||.|.|.||. +.+++|+. .+..+..+..+.+
T Consensus 116 ~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~-vr~~~gi~--~~~~~~~~~~~~~ 191 (407)
T PRK06185 116 EEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSR-VRALAGLE--VREFGAPMDVLWF 191 (407)
T ss_pred HHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchH-HHHHcCCC--ccccCCCceeEEE
Confidence 34544 489999999999999877765 3444455 36999999999999996 77888873 4445555555444
No 41
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.13 E-value=0.00022 Score=63.35 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=49.1
Q ss_pred hhHHHhCC-cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 2 GEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 2 ~~~a~~~G-~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
.+.+++.| ++++ +++|++++.+++++.|++.+|.+++||.||.|.|.||. +.+.+|..
T Consensus 118 ~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~-vr~~~~~~ 176 (388)
T PRK07608 118 WAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW-VRSQAGIK 176 (388)
T ss_pred HHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch-HHHhcCCC
Confidence 45677777 9988 89999999888888888877767999999999999996 77778763
No 42
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.08 E-value=0.00044 Score=61.56 Aligned_cols=58 Identities=7% Similarity=0.249 Sum_probs=49.2
Q ss_pred hHHHhC-CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 3 EEFCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 3 ~~a~~~-G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
+.+++. |++++.+++|++++.++++|.|.+.+|.+++|+.||.|.|.||. +.+.+|+.
T Consensus 120 ~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vR~~~~~~ 178 (391)
T PRK08020 120 QALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ-VRQMAGIG 178 (391)
T ss_pred HHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch-hHHHcCCC
Confidence 445555 99999999999999888888888877768999999999999995 77777764
No 43
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.06 E-value=0.00037 Score=61.73 Aligned_cols=59 Identities=8% Similarity=0.123 Sum_probs=49.6
Q ss_pred hhHHHh-CCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 2 GEEFCE-LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 2 ~~~a~~-~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
.+.+++ .|++++.+++|++++.++++|+|++.+|.++.||.||.|.|.||. +.++++++
T Consensus 112 ~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~-vr~~l~~~ 171 (382)
T TIGR01984 112 LSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSK-VRELLSIP 171 (382)
T ss_pred HHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChH-HHHHcCCC
Confidence 345666 499999999999999888888888877767999999999999985 77778763
No 44
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.99 E-value=0.00086 Score=59.76 Aligned_cols=59 Identities=17% Similarity=0.288 Sum_probs=45.7
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCC------C--cEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQ------G--DHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~------g--~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
|.+.|.+.|++++.. .|+++..+++++.|++.+ | .+++|+.||.|.|.+|. +.+.+|.+
T Consensus 98 L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~-v~r~lg~~ 164 (388)
T TIGR02023 98 LRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP-VAKELGLP 164 (388)
T ss_pred HHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH-HHHHcCCC
Confidence 356678889999765 699998888887765431 1 37999999999999984 77888764
No 45
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.98 E-value=0.0008 Score=59.82 Aligned_cols=52 Identities=15% Similarity=0.269 Sum_probs=46.0
Q ss_pred CCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 8 LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 8 ~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
.|++++++++|+++..++++|.|++.+|..+.||.||.|.|.|+. +.+.++.
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~~~ 177 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA-LREALGI 177 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh-hHHhhCC
Confidence 589999999999999888889888877767999999999999986 7777776
No 46
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.95 E-value=0.00017 Score=64.39 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=51.2
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
.+.+++.|++++.+++|++++.+++.+.|++.+|.++.||.||.|.|.+|. +.+.+|+.
T Consensus 118 ~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~g~~ 176 (403)
T PRK07333 118 RKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK-LRELAGIK 176 (403)
T ss_pred HHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHcCCC
Confidence 456778899999999999999888888888877768999999999999986 77778763
No 47
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.91 E-value=0.0014 Score=58.59 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=48.4
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeEEEE-eCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESVTIS-TKQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~-t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
|++.|++.|+++..+++|+++..+++++.+. ...+.+++|++||.|.|..+ .+++.+|..
T Consensus 101 La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s-~l~~~lg~~ 161 (396)
T COG0644 101 LAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS-ALARKLGLK 161 (396)
T ss_pred HHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch-HHHHHhCCC
Confidence 4678999999999999999999988776533 32225899999999999965 577888864
No 48
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.87 E-value=0.0016 Score=57.89 Aligned_cols=192 Identities=16% Similarity=0.107 Sum_probs=101.3
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCCccc
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQH 82 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~ 82 (252)
+.++ .+..++.+++|++|+..++.+.|.+.+|.+++|+.||.|.|..+. ... ....+...|..+.++.+..+
T Consensus 95 ~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~-~~~------~~~~Q~f~G~~v~~~~~~f~ 166 (374)
T PF05834_consen 95 ERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP-KAR------PLGLQHFYGWEVETDEPVFD 166 (374)
T ss_pred HHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc-ccc------ccccceeEEEEEeccCCCCC
Confidence 4455 345567789999999988888888888878999999999996554 111 12223455666666543111
Q ss_pred ccccee--ecCCCCCCCCceeEEEEecCCcEEEcccceecccccCccccccchhHHhhhhcCCCccccchhhhhhhhHHH
Q psy3952 83 LVRGNI--YPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEM 160 (252)
Q Consensus 83 ~~~~~i--~~~~~~~~~~~~~~~~~~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 160 (252)
.-...+ +.++.......-+|+.|...++.++..|.... .. ..+. +.++.
T Consensus 167 ~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~----~~---~~~~---------------------~~~~~- 217 (374)
T PF05834_consen 167 PDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSP----RP---ALPE---------------------EELKA- 217 (374)
T ss_pred CCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcC----CC---CCCH---------------------HHHHH-
Confidence 111111 12222101123355677777888887553211 00 0111 11211
Q ss_pred HhhhChhHHHHHHHHhccCCCCCCceecCCcceeEeecCCCCcc--cceEEEecCCeEEEeccCCccccchHHHHHHHHH
Q psy3952 161 IMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV--DDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILN 238 (252)
Q Consensus 161 ~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~--~~~~i~~~~~~~~~~G~~~~G~t~a~~~g~~va~ 238 (252)
.+.+.+.+ -+++..+|.+.=.|+.|++..++-... +-..+|..-|.++.+ .|.+|..+...++.+|+
T Consensus 218 -------~l~~~l~~--~g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~Ps--TGYs~~~~~~~a~~ia~ 286 (374)
T PF05834_consen 218 -------RLRRYLER--LGIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPS--TGYSFARIQRQADAIAD 286 (374)
T ss_pred -------HHHHHHHH--cCCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCc--ccHHHHHHHHHHHHHHH
Confidence 11234443 366777888888899998522111111 111223233333222 23345555666667777
Q ss_pred HHHh
Q psy3952 239 ELRR 242 (252)
Q Consensus 239 ~i~~ 242 (252)
.+.+
T Consensus 287 ~l~~ 290 (374)
T PF05834_consen 287 ALAK 290 (374)
T ss_pred HHhh
Confidence 6664
No 49
>PRK10015 oxidoreductase; Provisional
Probab=97.86 E-value=0.00077 Score=61.01 Aligned_cols=58 Identities=16% Similarity=0.274 Sum_probs=47.5
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
|.+.|++.|++++.+++|+++..+++++. |.++++ ++.|+.||.|.|.++ .+++.+|.
T Consensus 114 L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~-~i~A~~VI~AdG~~s-~v~~~lg~ 172 (429)
T PRK10015 114 LMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDD-ILEANVVILADGVNS-MLGRSLGM 172 (429)
T ss_pred HHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCe-EEECCEEEEccCcch-hhhcccCC
Confidence 35678889999999999999988777765 666655 899999999999976 47777775
No 50
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.79 E-value=7.1e-05 Score=65.58 Aligned_cols=59 Identities=20% Similarity=0.317 Sum_probs=51.2
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh----------HHHHHHcCC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA----------DEMALKSGC 60 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws----------~~l~~~~g~ 60 (252)
...+++.||+++++++|.++++++.++.|.|++|.+|+||.+|+|+|.-| -.+++.+|.
T Consensus 118 l~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~ 186 (408)
T COG2081 118 LKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGH 186 (408)
T ss_pred HHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCC
Confidence 45788999999999999999999988999999996799999999999544 347778885
No 51
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.78 E-value=3.3e-05 Score=62.13 Aligned_cols=50 Identities=26% Similarity=0.433 Sum_probs=39.2
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|.+++++++|+++.+.+++|.|++.++.++.|++||+|+|.++.
T Consensus 90 ~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 90 EYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSH 139 (203)
T ss_dssp HHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCS
T ss_pred HHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCC
Confidence 45778899999999999999999889999988878999999999998754
No 52
>PRK06834 hypothetical protein; Provisional
Probab=97.73 E-value=0.00013 Score=67.17 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=50.9
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
.+.+++.|++++.+++|++++.+++++.|++.+|.+++|++||.|.|.+| .+.+++|+.
T Consensus 107 ~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S-~vR~~lgi~ 165 (488)
T PRK06834 107 AEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS-LVRKAAGID 165 (488)
T ss_pred HHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC-CcHhhcCCC
Confidence 45677889999999999999998888888877776899999999999999 477788863
No 53
>PLN02463 lycopene beta cyclase
Probab=97.71 E-value=0.0019 Score=58.71 Aligned_cols=50 Identities=14% Similarity=0.186 Sum_probs=42.9
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
.+.+.+.|++++ .++|++|+..++++.|++++|.++.|+.||.|.|..+.
T Consensus 121 l~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 121 LERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred HHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 455677899997 47999999988888899888878999999999999875
No 54
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.71 E-value=8.1e-05 Score=66.75 Aligned_cols=67 Identities=27% Similarity=0.378 Sum_probs=44.0
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCCh----------HHHHHHcCCCCCCceeee
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA----------DEMALKSGCSLEPAIVPF 69 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws----------~~l~~~~g~~~~~~~~p~ 69 (252)
.+.++++|++++++++|++|+.++++ +.|+|+++..+.||.||+|+|.-| -.+++.+|.. -.+..|.
T Consensus 116 ~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~-i~~~~Pa 193 (409)
T PF03486_consen 116 LEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHT-ITPPYPA 193 (409)
T ss_dssp HHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT---EEEEEEE
T ss_pred HHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCc-EecCCCc
Confidence 45678999999999999999987777 889994444999999999999765 5677888853 2344443
No 55
>PRK07233 hypothetical protein; Provisional
Probab=97.70 E-value=0.0053 Score=55.17 Aligned_cols=50 Identities=26% Similarity=0.256 Sum_probs=40.1
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ 50 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w 50 (252)
|++.+++.|++|+.+++|++|+.+++++.+.+.++..++||+||+|+.+.
T Consensus 204 l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 204 LAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence 34567788999999999999998888776444444489999999999864
No 56
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.69 E-value=0.0002 Score=64.08 Aligned_cols=59 Identities=14% Similarity=0.298 Sum_probs=50.7
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
.+.+++.|++++++++|++++.++++|.|++.+|.+++||.||.|.|.|| .+.+.+|+.
T Consensus 119 ~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S-~vR~~lg~~ 177 (405)
T PRK05714 119 LERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANS-AVRRLAGCA 177 (405)
T ss_pred HHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCc-hhHHhcCCC
Confidence 34566789999999999999998888988888876799999999999999 577777763
No 57
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.68 E-value=0.00029 Score=63.14 Aligned_cols=69 Identities=28% Similarity=0.291 Sum_probs=54.4
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh----------HHHHHHcCCCCCCceeeeee
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA----------DEMALKSGCSLEPAIVPFRG 71 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws----------~~l~~~~g~~~~~~~~p~~g 71 (252)
.+.+++.|++++++++|++++.+++.|.|+++.+ ++.||.||+|+|.++ -.+++++|.. -.+..|...
T Consensus 112 ~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~~-~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~-i~~~~P~l~ 189 (400)
T TIGR00275 112 LNELKELGVEILTNSKVKSIKKDDNGFGVETSGG-EYEADKVILATGGLSYPQLGSTGDGYEIAESLGHT-IVPPVPALV 189 (400)
T ss_pred HHHHHHCCCEEEeCCEEEEEEecCCeEEEEECCc-EEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCCC-EecccceEe
Confidence 4567788999999999999988777888888655 899999999999966 5788888863 234555443
Q ss_pred E
Q psy3952 72 E 72 (252)
Q Consensus 72 ~ 72 (252)
.
T Consensus 190 ~ 190 (400)
T TIGR00275 190 P 190 (400)
T ss_pred E
Confidence 3
No 58
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.65 E-value=0.0034 Score=55.74 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=47.8
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
.+.+++.|...+.+++|++++.++++|.|++++|.+++||.||.|.|.+|. +.+.+|+.
T Consensus 118 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~g~~ 176 (388)
T PRK07494 118 EARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP-VREAAGIG 176 (388)
T ss_pred HHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch-hHHhcCCC
Confidence 345666654448899999999988889998888868999999999999985 66777763
No 59
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.50 E-value=0.00022 Score=65.61 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=44.7
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
|++.++++|++|+++++|++|..++++ +.|.+.+|.++.||+||+|+|+|..
T Consensus 235 L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 235 LVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDT 287 (493)
T ss_pred HHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHH
Confidence 467789999999999999999887665 4588888867999999999999863
No 60
>PRK09126 hypothetical protein; Provisional
Probab=97.49 E-value=0.0053 Score=54.58 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=46.5
Q ss_pred HhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 6 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
+..|++++.+++|++++.+++.+.|++++|.+++||.||.|.|.+|. +.+.+|+.
T Consensus 122 ~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~g~~ 176 (392)
T PRK09126 122 QQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA-TRRQLGIG 176 (392)
T ss_pred hCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch-hhHhcCCC
Confidence 34699999999999999888888888777778999999999999885 66777753
No 61
>PRK08244 hypothetical protein; Provisional
Probab=97.49 E-value=0.008 Score=55.35 Aligned_cols=58 Identities=24% Similarity=0.314 Sum_probs=46.8
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEE--eCCC-cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTIS--TKQG-DHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~--t~~g-~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
.+.+++.|++++.+++|++++.++++++|+ +.+| .+++||+||.|.|.+|. +.+++|+
T Consensus 107 ~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~-vR~~lgi 167 (493)
T PRK08244 107 EEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI-VRKQAGI 167 (493)
T ss_pred HHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH-HHHhcCC
Confidence 355777899999999999999888887654 3345 37999999999999984 7777775
No 62
>PRK07190 hypothetical protein; Provisional
Probab=97.42 E-value=0.00083 Score=61.77 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=49.7
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
.+.+++.|++++.+++|++++.+++++.+.+.+|.+++|++||.|.|.+| .+.+.+|++
T Consensus 116 ~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S-~vR~~lgi~ 174 (487)
T PRK07190 116 DDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS-FVRNHFNVP 174 (487)
T ss_pred HHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH-HHHHHcCCC
Confidence 35677889999999999999998888877766676899999999999987 466777763
No 63
>PRK06847 hypothetical protein; Provisional
Probab=97.37 E-value=0.00064 Score=60.07 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=48.8
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
.+.+++.|++++.+++|++++.+++++.|.+.+|.++.||.||.|.|.|+..-..+.+.
T Consensus 114 ~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r~~l~~~ 172 (375)
T PRK06847 114 ADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKVRSLVFPD 172 (375)
T ss_pred HHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcchhhHhcCC
Confidence 45567789999999999999988888888888887899999999999999654444443
No 64
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.36 E-value=0.0007 Score=59.98 Aligned_cols=66 Identities=14% Similarity=0.241 Sum_probs=49.5
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC-cEEEcCEEEEcCCCCh----------HHHHHHcCCCCCCceeeee
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQA----------DEMALKSGCSLEPAIVPFR 70 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g-~~i~A~~VV~AaG~ws----------~~l~~~~g~~~~~~~~p~~ 70 (252)
...++++|++|+++++|++| ++++|.|.+..+ ..++|++||+|+|.-| -.+++.+|.. -.+..|.-
T Consensus 93 ~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~-i~~~~PaL 169 (376)
T TIGR03862 93 LKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGVS-VAPFAPAN 169 (376)
T ss_pred HHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCCc-ccCCcCee
Confidence 45788999999999999999 334588876432 2699999999999865 4778888863 33445543
No 65
>PRK06184 hypothetical protein; Provisional
Probab=97.30 E-value=0.0011 Score=61.08 Aligned_cols=59 Identities=17% Similarity=0.317 Sum_probs=48.4
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEe---CCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTIST---KQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t---~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
.+.+++.|++++.+++|++++.++++++|.. +++.+++||+||.|.|.+|. +.+++|+.
T Consensus 116 ~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~-vR~~lgi~ 177 (502)
T PRK06184 116 RERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF-VRKALGIG 177 (502)
T ss_pred HHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH-HHHhCCCC
Confidence 4567778999999999999998888877654 44557999999999999995 67778763
No 66
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.10 E-value=0.0017 Score=57.90 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=47.4
Q ss_pred hhHHHhC-CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 2 GEEFCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 2 ~~~a~~~-G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
.+.+.+. +++++++++|++++.+++++.|.+.+|.++.||.||.|.|.||..-..+.|.
T Consensus 116 ~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g~ 175 (396)
T PRK08163 116 LEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVGD 175 (396)
T ss_pred HHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHHHhhccCC
Confidence 3455555 4999999999999988888888887886799999999999999765444453
No 67
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.10 E-value=0.0015 Score=55.00 Aligned_cols=55 Identities=15% Similarity=0.173 Sum_probs=40.9
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCC-eE-EEEeC-----------CCcEEEcCEEEEcCCCChHHHH
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPE-SV-TISTK-----------QGDHLESSYALVCAGLQADEMA 55 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~-~~-~V~t~-----------~g~~i~A~~VV~AaG~ws~~l~ 55 (252)
|.+.|+++|++++++++|+++..+++ ++ .|.++ +..+++|+.||+|+|.|+....
T Consensus 110 L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~ 177 (257)
T PRK04176 110 LAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVS 177 (257)
T ss_pred HHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHH
Confidence 35678899999999999999987554 43 23221 1237999999999999997443
No 68
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.07 E-value=0.0014 Score=60.46 Aligned_cols=51 Identities=25% Similarity=0.418 Sum_probs=43.5
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
|++.++++|++|+++++|++|..++++ +.|++.+|.++.||.||+|+++..
T Consensus 225 l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~ 276 (502)
T TIGR02734 225 MAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHH 276 (502)
T ss_pred HHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHH
Confidence 356788899999999999999987766 568888876799999999999854
No 69
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.04 E-value=0.0017 Score=61.12 Aligned_cols=57 Identities=16% Similarity=0.178 Sum_probs=44.0
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE---EEeCCC-cEEEc-CEEEEcCCCChHHHHHHc
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT---ISTKQG-DHLES-SYALVCAGLQADEMALKS 58 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~---V~t~~g-~~i~A-~~VV~AaG~ws~~l~~~~ 58 (252)
.+.|++.|++|+++++|+++..+++++. +.++++ ..+.| +.||+|+|.|+..+..+.
T Consensus 224 ~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~~~ 285 (581)
T PRK06134 224 LKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPARRA 285 (581)
T ss_pred HHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHHHH
Confidence 4678899999999999999987766643 344445 24789 999999999997665443
No 70
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=96.98 E-value=0.071 Score=47.78 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=41.4
Q ss_pred ChhHHHhCCcEEEeCceeEEEEE---cCCeEEEE--eC-------CCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKE---NPESVTIS--TK-------QGDHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~---~~~~~~V~--t~-------~g~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
|++.|+++|++++.++ +.+++. .++.+.|+ +. +..+++|+.||.|.|..| .+.+.+|.
T Consensus 99 L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S-~v~~~~g~ 168 (398)
T TIGR02028 99 LRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS-RVAKEIDA 168 (398)
T ss_pred HHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch-HHHHHhCC
Confidence 3566888999998875 777753 23445543 22 223799999999999988 57788875
No 71
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=96.90 E-value=0.097 Score=47.74 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=42.2
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEc---CCeEEEEe---------CCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKEN---PESVTIST---------KQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~---~~~~~V~t---------~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
|.+.|++.|++++++ .|++++.. ++.+.|+. +++.+++|+.||-|-|.+| .+++.+|..
T Consensus 138 L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S-~vrr~lg~~ 208 (450)
T PLN00093 138 LRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANS-RVAKDIDAG 208 (450)
T ss_pred HHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcch-HHHHHhCCC
Confidence 356788899999875 58888743 23455543 2224799999999999988 577777763
No 72
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.87 E-value=0.0034 Score=56.04 Aligned_cols=56 Identities=27% Similarity=0.478 Sum_probs=46.7
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeE-EEEeCCCcEEEcCEEEEcCCCChHHHHHH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADEMALK 57 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t~~g~~i~A~~VV~AaG~ws~~l~~~ 57 (252)
.+..+++|++|+++++|.+|+..++.+ .|.+.+|.++.||+||+|-|--+.....+
T Consensus 180 ~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~ 236 (486)
T COG2509 180 REYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEM 236 (486)
T ss_pred HHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHH
Confidence 356778999999999999999988754 47888887999999999999877655443
No 73
>PRK07588 hypothetical protein; Provisional
Probab=96.77 E-value=0.0046 Score=55.05 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=42.1
Q ss_pred hCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE 53 (252)
Q Consensus 7 ~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~ 53 (252)
..|++++++++|++++.++++|.|++.+|.+++||.||.|.|.+|..
T Consensus 114 ~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 114 DGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHV 160 (391)
T ss_pred hcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccc
Confidence 45899999999999999888899988888779999999999999853
No 74
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.74 E-value=0.0061 Score=54.10 Aligned_cols=58 Identities=19% Similarity=0.430 Sum_probs=48.7
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC 60 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~ 60 (252)
+.+++.|++++.+++|++++.+++.+.|.+.+|.++.||.||+|+|...+ .+++.+|+
T Consensus 191 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl 249 (377)
T PRK04965 191 HRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGL 249 (377)
T ss_pred HHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCC
Confidence 45678899999999999998877777888877878999999999999875 57677775
No 75
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.71 E-value=0.0049 Score=52.37 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=42.3
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|+++++ ++|++++..++.|.|++.+|.++.+|+||+|+|.+..
T Consensus 65 ~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 65 EQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred HHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence 457788999998 8999999888889888877768999999999999753
No 76
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.68 E-value=0.0043 Score=57.72 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=43.1
Q ss_pred HHH-hCCcEEEeCceeEEEEEcCCeEE-EEeC-CC---cEEEcCEEEEcCCC-ChHHHHHHcCC
Q psy3952 4 EFC-ELGGEIRLNQQVESFKENPESVT-ISTK-QG---DHLESSYALVCAGL-QADEMALKSGC 60 (252)
Q Consensus 4 ~a~-~~G~~i~~~~~V~~i~~~~~~~~-V~t~-~g---~~i~A~~VV~AaG~-ws~~l~~~~g~ 60 (252)
.|+ +.|++|+++|.|++|..++++++ |+.. .+ ..+.|+.||+|||+ ++..|+...|+
T Consensus 202 ~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGI 265 (532)
T TIGR01810 202 PAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGI 265 (532)
T ss_pred hhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCC
Confidence 344 55899999999999998876543 5432 22 12589999999999 89999887765
No 77
>PRK08013 oxidoreductase; Provisional
Probab=96.64 E-value=0.012 Score=52.77 Aligned_cols=59 Identities=8% Similarity=0.057 Sum_probs=48.7
Q ss_pred hhHHHhC-CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 2 GEEFCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 2 ~~~a~~~-G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
.+.+++. |++++.+++|++++.+++++.|+..+|.+++||.||-|-|.+| .+.+.+|++
T Consensus 118 ~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S-~vR~~~~~~ 177 (400)
T PRK08013 118 WQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS-WLRNKADIP 177 (400)
T ss_pred HHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc-HHHHHcCCC
Confidence 3455564 8999999999999988888888877777899999999999998 466777763
No 78
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.58 E-value=0.0057 Score=55.39 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=39.8
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcC-Ce---EEEEeCCCc--EEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENP-ES---VTISTKQGD--HLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~-~~---~~V~t~~g~--~i~A~~VV~AaG~ws~ 52 (252)
.+.+++.|++++++++|+++..++ ++ +.+.+.++. .+.|+.||+|+|.|+.
T Consensus 137 ~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 137 YKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 456888999999999999999854 43 334555552 3789999999999986
No 79
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.53 E-value=0.0058 Score=55.83 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=39.4
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEe--CCC--cEEEcCEEEEcCCCCh
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT-IST--KQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t--~~g--~~i~A~~VV~AaG~ws 51 (252)
.+.+++.|++++++++|+++..+++++. |.+ .+| ..+.|+.||+|+|.++
T Consensus 138 ~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 138 YRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred HHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 4567889999999999999998777653 443 222 3689999999999875
No 80
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=96.49 E-value=0.0035 Score=55.56 Aligned_cols=48 Identities=31% Similarity=0.485 Sum_probs=40.5
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
.+...|.+|+.+++|++|+.++++++|.+.+|.++.||+||+|+.+..
T Consensus 218 ~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~ 265 (450)
T PF01593_consen 218 AAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSV 265 (450)
T ss_dssp HHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHH
T ss_pred HHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchhh
Confidence 445568899999999999999999999988887899999999988765
No 81
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.48 E-value=0.014 Score=51.94 Aligned_cols=52 Identities=10% Similarity=0.225 Sum_probs=45.2
Q ss_pred CCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 8 LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 8 ~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
.|++++.+++|++++.++++++|++.+|.+++||.||.|-|.+|. +.+.+|+
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~-vR~~~gi 175 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ-VRQLAGI 175 (384)
T ss_pred CCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch-hHHhcCC
Confidence 479999999999999988888888888878999999999999984 5566665
No 82
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=96.46 E-value=0.32 Score=43.36 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=46.9
Q ss_pred hhHHHhCC-cEEEeCceeEEEEEcCCeEEEEeC-CCcEEEcCEEEEcCCCChHHHHHHcC
Q psy3952 2 GEEFCELG-GEIRLNQQVESFKENPESVTISTK-QGDHLESSYALVCAGLQADEMALKSG 59 (252)
Q Consensus 2 ~~~a~~~G-~~i~~~~~V~~i~~~~~~~~V~t~-~g~~i~A~~VV~AaG~ws~~l~~~~g 59 (252)
.+.+.+.+ ++++.+++|+.++.+++.+.|+.+ +|.+++||.||-|=|.+|. +-+.++
T Consensus 111 ~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~-vR~~~~ 169 (387)
T COG0654 111 LEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSA-VRRAAG 169 (387)
T ss_pred HHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchH-HHHhcC
Confidence 34566665 899999999999999988777666 8878999999999999884 556666
No 83
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.45 E-value=0.0082 Score=54.33 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=39.4
Q ss_pred hhHHHhCCcEEEeCceeEEEEEc--CCeEE-EEe-CCCcEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKEN--PESVT-IST-KQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~--~~~~~-V~t-~~g~~i~A~~VV~AaG~ws~ 52 (252)
.+.++++|++|+++++|++|..+ ++.+. |.+ .++..+.|+.||+|+|.++.
T Consensus 130 ~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 130 YSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCccc
Confidence 45688999999999999999876 34443 444 33347999999999998764
No 84
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=96.41 E-value=0.022 Score=50.98 Aligned_cols=57 Identities=9% Similarity=0.098 Sum_probs=47.1
Q ss_pred hHHHh-CCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 3 EEFCE-LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
+.+.+ .|++++.+++|++++.+++.+.|++.+|.+++||.||-|-|.+|. +.+.+|.
T Consensus 119 ~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~-vR~~~~~ 176 (405)
T PRK08850 119 EQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW-LRRQMDI 176 (405)
T ss_pred HHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh-hHHHcCC
Confidence 34444 489999999999999888888888888878999999999999874 6677775
No 85
>PRK09897 hypothetical protein; Provisional
Probab=96.38 E-value=0.0095 Score=55.33 Aligned_cols=49 Identities=14% Similarity=0.071 Sum_probs=40.0
Q ss_pred hHHHhCC--cEEEeCceeEEEEEcCCeEEEEeCC-CcEEEcCEEEEcCCCCh
Q psy3952 3 EEFCELG--GEIRLNQQVESFKENPESVTISTKQ-GDHLESSYALVCAGLQA 51 (252)
Q Consensus 3 ~~a~~~G--~~i~~~~~V~~i~~~~~~~~V~t~~-g~~i~A~~VV~AaG~ws 51 (252)
+.+++.| ++++.+++|++++..+++|.|.+.+ |..+.||+||+|+|...
T Consensus 115 ~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~ 166 (534)
T PRK09897 115 DQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVW 166 (534)
T ss_pred HHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCC
Confidence 4556777 7888899999999988889998754 34799999999999743
No 86
>PRK06996 hypothetical protein; Provisional
Probab=96.32 E-value=0.023 Score=50.82 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=46.7
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC---cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQG---DHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g---~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
|.+.+++.|+++..+++|++++..+++|+|+..+| .+++||.||.|-|.-+..+-+.++.
T Consensus 121 L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~ 183 (398)
T PRK06996 121 LARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAGD 183 (398)
T ss_pred HHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcCC
Confidence 34667888999999999999998888888875533 4799999999999743334466665
No 87
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=96.28 E-value=0.024 Score=52.97 Aligned_cols=58 Identities=22% Similarity=0.452 Sum_probs=45.4
Q ss_pred hHHHhC-CcEEEeCceeEEEEEcCCeEEEE--eCCCc-EEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 3 EEFCEL-GGEIRLNQQVESFKENPESVTIS--TKQGD-HLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 3 ~~a~~~-G~~i~~~~~V~~i~~~~~~~~V~--t~~g~-~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
+.+++. |++++.+++|++++.+++++.+. +.+|. +++||+||.|.|.+|. +.+.+|+.
T Consensus 133 ~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~-vR~~lg~~ 194 (547)
T PRK08132 133 ERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP-LREMLGLE 194 (547)
T ss_pred HHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH-HHHHcCCC
Confidence 445554 79999999999999888877643 34453 6999999999999986 76777763
No 88
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.25 E-value=0.02 Score=51.16 Aligned_cols=57 Identities=21% Similarity=0.392 Sum_probs=45.3
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH-HHHHcCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE-MALKSGC 60 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~-l~~~~g~ 60 (252)
+.++++|++++++++|++++. ++.+.|.+.+|.++.||.||+|+|...+. +++.+|+
T Consensus 194 ~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl 251 (396)
T PRK09754 194 QRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISANDQLAREANL 251 (396)
T ss_pred HHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCC
Confidence 346788999999999999976 45567777777689999999999998754 5555554
No 89
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=96.14 E-value=0.055 Score=50.46 Aligned_cols=57 Identities=16% Similarity=0.395 Sum_probs=45.1
Q ss_pred hHHHh-CCcEEEeCceeEEEEEcCCeEEEEeC--CC--cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 3 EEFCE-LGGEIRLNQQVESFKENPESVTISTK--QG--DHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~~V~t~--~g--~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
+.+.+ .|++++.+++|++++.++++++|+.. +| .+++||+||-|-|.+|. +-+.+|+
T Consensus 121 ~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~-vR~~lg~ 182 (538)
T PRK06183 121 AGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF-VRRTLGV 182 (538)
T ss_pred HHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh-HHHHcCC
Confidence 33444 49999999999999998888876543 45 46999999999999885 6666675
No 90
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.14 E-value=0.017 Score=51.85 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=37.9
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE-E--E-eCCC--cEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT-I--S-TKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V--~-t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+.++++|++|+.+++|+++..++++++ | . ..+| ..|.|+.||+|+|.++.
T Consensus 148 ~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 148 AKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 5678899999999999999999888754 3 3 2345 35889999999999996
No 91
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.12 E-value=0.03 Score=50.17 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=44.2
Q ss_pred hHHHhC-CcEEEeCceeEEEEEcCCeEEEEeC--CC-cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 3 EEFCEL-GGEIRLNQQVESFKENPESVTISTK--QG-DHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 3 ~~a~~~-G~~i~~~~~V~~i~~~~~~~~V~t~--~g-~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
+.+++. |++++.+++|++++.+++++.|+.. ++ .+++||.||-|.|.+| .+.+.++.
T Consensus 129 ~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S-~vR~~~~~ 189 (415)
T PRK07364 129 EFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARS-PIRQAAGI 189 (415)
T ss_pred HHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCc-hhHHHhCC
Confidence 344454 8999999999999988887776643 33 3599999999999999 46677765
No 92
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.09 E-value=0.3 Score=43.39 Aligned_cols=60 Identities=15% Similarity=0.355 Sum_probs=39.9
Q ss_pred CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCCCCCceeeeeeEEEEeCCC
Q psy3952 9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA 79 (252)
Q Consensus 9 G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~~~p~~g~~~~~~~~ 79 (252)
+..+..+++|+++ +.+++++ + +|.+++|+.||.|.|..+..... .+ .+...|..+.+..+
T Consensus 100 ~~~i~~~~~V~~v--~~~~v~l-~-dg~~~~A~~VI~A~G~~s~~~~~-~~------~Q~f~G~~~r~~~p 159 (370)
T TIGR01789 100 PEGVILGRKAVGL--DADGVDL-A-PGTRINARSVIDCRGFKPSAHLK-GG------FQVFLGREMRLQEP 159 (370)
T ss_pred cccEEecCEEEEE--eCCEEEE-C-CCCEEEeeEEEECCCCCCCcccc-ce------eeEEEEEEEEEcCC
Confidence 4447778999988 3445666 4 45589999999999988643321 12 34466777776543
No 93
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.08 E-value=0.01 Score=54.65 Aligned_cols=49 Identities=27% Similarity=0.349 Sum_probs=43.1
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGL 49 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ 49 (252)
|++.++++|++|+++++|++|..++++ +++.+.+|..++||.||.++..
T Consensus 230 L~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 230 LAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 467889999999999999999998875 6788888767999999999988
No 94
>PLN02612 phytoene desaturase
Probab=96.08 E-value=0.014 Score=54.82 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=39.1
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCe--EEEEeCCCcEEEcCEEEEcCCCC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPES--VTISTKQGDHLESSYALVCAGLQ 50 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~--~~V~t~~g~~i~A~~VV~AaG~w 50 (252)
++..++.|++|+++++|++|+.++++ +.|.+.+|..+.||+||+|+.++
T Consensus 315 ~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~ 365 (567)
T PLN02612 315 VDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVD 365 (567)
T ss_pred HHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHH
Confidence 45566789999999999999986554 34777677679999999998763
No 95
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.012 Score=50.84 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=43.2
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEM 54 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l 54 (252)
.++++..|+++.. ..|..++..++.++|.|++| +++|+.||+|+|.....+
T Consensus 68 ~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~-~~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 68 KEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKG-TYEAKAVIIATGAGARKL 118 (305)
T ss_pred HHHHhhcCeEEEE-EEEEEEeecCceEEEEECCC-eEEEeEEEECcCCcccCC
Confidence 4567788999987 78888887766788999999 799999999999987654
No 96
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.07 E-value=0.015 Score=53.22 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=40.0
Q ss_pred hHHHhCCcE--EEeCceeEEEEEcCCeEEEEeCCC----cEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGE--IRLNQQVESFKENPESVTISTKQG----DHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~--i~~~~~V~~i~~~~~~~~V~t~~g----~~i~A~~VV~AaG~ws~ 52 (252)
..|+..|.. |+++++|++++..+++|.|++.++ .+..+|.||+|+|.++.
T Consensus 119 ~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 119 DFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred HHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 456777888 899999999999888899887532 13578999999998753
No 97
>PRK06126 hypothetical protein; Provisional
Probab=96.06 E-value=0.018 Score=53.67 Aligned_cols=57 Identities=19% Similarity=0.416 Sum_probs=44.7
Q ss_pred hHHHh-CCcEEEeCceeEEEEEcCCeEEEEe---CCC--cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 3 EEFCE-LGGEIRLNQQVESFKENPESVTIST---KQG--DHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~~V~t---~~g--~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
+.+++ .|++++++++|++++.+++++++.. .+| .++.||+||.|.|++|. +.+.+|+
T Consensus 134 ~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~-VR~~lgi 196 (545)
T PRK06126 134 EHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA-VRRSLGI 196 (545)
T ss_pred HHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH-HHHhcCC
Confidence 44554 4899999999999998888766542 234 36999999999999995 7777775
No 98
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.02 E-value=0.014 Score=53.29 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=37.7
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCe-E-EEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPES-V-TISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~-~-~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
|.+.|+++||++++++ |+++..++++ + .|++.+|.+++||.||-|+|.-+.
T Consensus 160 L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 160 LRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 4577899999999985 7777776554 3 488888878999999999999764
No 99
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=96.00 E-value=0.0098 Score=53.06 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=38.1
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEE-eCCCcEEEcCEEEEcCCCCh
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTIS-TKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~-t~~g~~i~A~~VV~AaG~ws 51 (252)
+.+++.|++|+++++|++|+.+++++++. +.+|.++.||+||+|+-++.
T Consensus 205 ~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 205 RWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRH 254 (419)
T ss_pred HHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHH
Confidence 34557799999999999999988876532 23454799999999977664
No 100
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=95.95 E-value=0.02 Score=52.94 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=40.0
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeE---EEEeCCC--cEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESV---TISTKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~---~V~t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+.+++.|++++++++|++|..+++++ .+.+.++ .++.|+.||+|+|.|+.
T Consensus 197 ~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 197 LKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred HHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCccc
Confidence 456788999999999999998776654 3444443 26999999999998874
No 101
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.92 E-value=0.021 Score=51.83 Aligned_cols=50 Identities=22% Similarity=0.350 Sum_probs=43.5
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE 53 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~ 53 (252)
+.++++|++++++++|++++.+++.+.|.++++ ++.+|.|++|+|.+.+.
T Consensus 207 ~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 207 TILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 457788999999999999998777778888778 79999999999998764
No 102
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.90 E-value=0.029 Score=50.89 Aligned_cols=57 Identities=28% Similarity=0.433 Sum_probs=45.0
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC 60 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~ 60 (252)
+.+++.|++++.+++|++++.+++.+.+.++++ ++.||.||+|+|...+ .+++..|+
T Consensus 199 ~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~d~vi~a~G~~p~~~~l~~~gl 256 (444)
T PRK09564 199 EELRENGVELHLNEFVKSLIGEDKVEGVVTDKG-EYEADVVIVATGVKPNTEFLEDTGL 256 (444)
T ss_pred HHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCC-EEEcCEEEECcCCCcCHHHHHhcCc
Confidence 456789999999999999976544455777777 8999999999998854 56666664
No 103
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.86 E-value=0.026 Score=52.40 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=42.9
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
+.+++.|++++.+++|+++...++.+.|.+.+|..+.|+.||+|+|...
T Consensus 274 ~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 274 EHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW 322 (517)
T ss_pred HHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence 4577889999999999999988778888887776899999999999854
No 104
>PRK08401 L-aspartate oxidase; Provisional
Probab=95.84 E-value=0.021 Score=52.24 Aligned_cols=50 Identities=12% Similarity=0.005 Sum_probs=39.4
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChHH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADE 53 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~~ 53 (252)
.+.+++.|++++++ .|+.+..+++++. |.++.. .+.|+.||+|+|.|+..
T Consensus 127 ~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~~g~-~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 127 YKHARELGVNFIRG-FAEELAIKNGKAYGVFLDGE-LLKFDATVIATGGFSGL 177 (466)
T ss_pred HHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEECCE-EEEeCeEEECCCcCcCC
Confidence 45677889999875 7888877666654 666444 79999999999999864
No 105
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.82 E-value=0.026 Score=50.97 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=39.9
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCC--cEEEcCEEEEcCCCCh
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT-ISTKQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g--~~i~A~~VV~AaG~ws 51 (252)
.+.++++|++++.+++|++++.+++++. |.+.+| ..++||.||+|+|...
T Consensus 266 ~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 266 RRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 4567789999999999999998777665 445444 3599999999999864
No 106
>PRK05868 hypothetical protein; Validated
Probab=95.81 E-value=0.026 Score=50.01 Aligned_cols=52 Identities=12% Similarity=0.232 Sum_probs=44.0
Q ss_pred HhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHc
Q psy3952 6 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKS 58 (252)
Q Consensus 6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~ 58 (252)
...|++++++++|++++.++++++|+..+|.+++||.||-|-|.+|. +.+++
T Consensus 115 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~-vR~~~ 166 (372)
T PRK05868 115 TQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN-VRRLV 166 (372)
T ss_pred ccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch-HHHHh
Confidence 35699999999999999888888888888778999999999999984 44444
No 107
>PRK14727 putative mercuric reductase; Provisional
Probab=95.81 E-value=0.025 Score=52.01 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=43.6
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE 53 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~ 53 (252)
+.+++.|++++++++|++++.+++.+.|.++++ ++.||.||+|+|.+.+.
T Consensus 236 ~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 236 ACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred HHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 456788999999999999987777788888888 89999999999999764
No 108
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=95.77 E-value=0.029 Score=50.98 Aligned_cols=52 Identities=13% Similarity=0.210 Sum_probs=43.0
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCC-e-EEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPE-S-VTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~-~-~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
|++.++..|++++.+++|++|..+++ + +.|.+.+|+++.|+.||.....|..
T Consensus 238 l~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 238 FSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 35667889999999999999988753 3 5688888878999999998887754
No 109
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.73 E-value=0.031 Score=51.83 Aligned_cols=49 Identities=14% Similarity=0.260 Sum_probs=42.5
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
+.+++.|++++.+++|+++..+++.+.|.+.+|..+.+|++|+|+|...
T Consensus 275 ~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 275 EHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 4567789999999999999887777888887776799999999999864
No 110
>PRK07121 hypothetical protein; Validated
Probab=95.72 E-value=0.024 Score=52.19 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=38.2
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcC-CeE-EEEe--CCC-cEEEc-CEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENP-ESV-TIST--KQG-DHLES-SYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~-~~~-~V~t--~~g-~~i~A-~~VV~AaG~ws~ 52 (252)
.+.+++.|++|+++++|+++..++ +++ .|.. ..+ ..+.| +.||+|+|.|+.
T Consensus 184 ~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 184 AKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred HHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 456788999999999999998764 443 2432 222 35889 999999998873
No 111
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=95.71 E-value=0.034 Score=46.75 Aligned_cols=51 Identities=16% Similarity=0.179 Sum_probs=39.0
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCC--eEE-EEeC-----------CCcEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPE--SVT-ISTK-----------QGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~--~~~-V~t~-----------~g~~i~A~~VV~AaG~ws~ 52 (252)
.+.|+++|++++++++|+++..+++ ++. |.++ +..++.|+.||.|+|..+.
T Consensus 107 ~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~ 171 (254)
T TIGR00292 107 ASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAE 171 (254)
T ss_pred HHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCch
Confidence 4678889999999999999987665 332 4332 1237999999999998874
No 112
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=95.68 E-value=0.037 Score=52.09 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=40.5
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE-EE--eCCC-cEEEcC-EEEEcCCCChHHHH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT-IS--TKQG-DHLESS-YALVCAGLQADEMA 55 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~--t~~g-~~i~A~-~VV~AaG~ws~~l~ 55 (252)
.+.++++|++|+.+++|+++..+++++. |. ..++ ..+.|+ .||+|+|.|+....
T Consensus 221 ~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~ 279 (574)
T PRK12842 221 AKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSHDLA 279 (574)
T ss_pred HHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHH
Confidence 3457789999999999999998777643 43 3334 247885 69999999985553
No 113
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=95.66 E-value=0.033 Score=50.82 Aligned_cols=51 Identities=22% Similarity=0.362 Sum_probs=42.9
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE 53 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~ 53 (252)
+.++++|++++.+++|++++.+++++.|++.+|.++.+|.||+|+|...+.
T Consensus 224 ~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 224 YHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred HHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 456788999999999999987777777777666689999999999987653
No 114
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.65 E-value=0.029 Score=52.87 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=39.1
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEe-CCC--cEEEc-CEEEEcCCCChHH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT-IST-KQG--DHLES-SYALVCAGLQADE 53 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t-~~g--~~i~A-~~VV~AaG~ws~~ 53 (252)
.+.++++|++++++++|+++..+++++. |.+ .+| ..+.| +.||+|+|.++..
T Consensus 228 ~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n 284 (578)
T PRK12843 228 LYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRH 284 (578)
T ss_pred HHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccC
Confidence 4567889999999999999987666543 443 233 24776 6899999999853
No 115
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.60 E-value=0.021 Score=49.38 Aligned_cols=59 Identities=24% Similarity=0.405 Sum_probs=44.3
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeEEEE--eC-CC--cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESVTIS--TK-QG--DHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~--t~-~g--~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
|.+.+++.|+++..+++|++++.+++++++. .. +| .+++||.||-|-|.+|. +.+.++.
T Consensus 117 L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~-vR~~l~~ 180 (356)
T PF01494_consen 117 LREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK-VRKQLGI 180 (356)
T ss_dssp HHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H-HHHHTTG
T ss_pred hhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc-hhhhccc
Confidence 3466788899999999999999888876533 22 23 36999999999999984 6667765
No 116
>PLN02268 probable polyamine oxidase
Probab=95.59 E-value=0.029 Score=50.74 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=38.8
Q ss_pred hCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 7 ~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
..|++|+.+++|++|...+++|+|++.+|.++.||+||+|.-+..
T Consensus 208 ~~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~ 252 (435)
T PLN02268 208 AKGLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGV 252 (435)
T ss_pred hccCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHH
Confidence 457789999999999998888999988876799999999985543
No 117
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=95.56 E-value=0.019 Score=49.05 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=40.9
Q ss_pred HHHhC-CcEEEeCceeEEEEEc--CCeE---EEEeCCC----cEEEcCEEEEcCCC-ChHHHHHHcCC
Q psy3952 4 EFCEL-GGEIRLNQQVESFKEN--PESV---TISTKQG----DHLESSYALVCAGL-QADEMALKSGC 60 (252)
Q Consensus 4 ~a~~~-G~~i~~~~~V~~i~~~--~~~~---~V~t~~g----~~i~A~~VV~AaG~-ws~~l~~~~g~ 60 (252)
.|.++ |++|+++|.|++|..+ ++++ .+...++ ..+.|+.||+|||+ .+..|+...|+
T Consensus 201 ~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 201 PALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 44555 9999999999999654 4443 3344444 35789999999997 47788887775
No 118
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=95.55 E-value=0.038 Score=49.00 Aligned_cols=57 Identities=9% Similarity=0.081 Sum_probs=46.8
Q ss_pred hhHHHhC-CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 2 GEEFCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 2 ~~~a~~~-G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
.+.+++. +++++++++|+++..+++++.|..+++ +++||.||-|-|.+|. +.+.++.
T Consensus 111 ~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~-vR~~l~~ 168 (374)
T PRK06617 111 LSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK-VRSHYFA 168 (374)
T ss_pred HHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch-hHHhcCC
Confidence 3455565 489999999999998888888888888 9999999999999984 5566664
No 119
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=95.53 E-value=0.027 Score=51.81 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=38.2
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeE--EEEeCC----CcEEEcCEEEEcCCCCh
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESV--TISTKQ----GDHLESSYALVCAGLQA 51 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~--~V~t~~----g~~i~A~~VV~AaG~ws 51 (252)
|++.++++|++|+++++|++|..++++. .+.++. +.++.||.||.++.++.
T Consensus 238 L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~ 294 (492)
T TIGR02733 238 LVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQS 294 (492)
T ss_pred HHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHH
Confidence 3566778899999999999999887642 222222 13799999999998853
No 120
>PRK11445 putative oxidoreductase; Provisional
Probab=95.52 E-value=0.048 Score=47.93 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=43.9
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEe-CCCc--EEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTIST-KQGD--HLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t-~~g~--~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
+.+.|++++.++.|++++.++++|.|.+ .+|. +++|+.||.|.|..|. +.++++.
T Consensus 108 ~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~-vr~~l~~ 165 (351)
T PRK11445 108 LIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM-VRRHLYP 165 (351)
T ss_pred HHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH-HhHHhcC
Confidence 3467899999999999998888888764 4552 6999999999999984 5565553
No 121
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=95.51 E-value=0.039 Score=52.31 Aligned_cols=50 Identities=10% Similarity=0.083 Sum_probs=37.8
Q ss_pred hHHHhCC-cEEEeCceeEEEEEcCCeEE-E---EeCCC--cEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELG-GEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G-~~i~~~~~V~~i~~~~~~~~-V---~t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
+.++++| ++++++++|+++..+++++. | .+.+| ..+.|+.||+|+|.|+.
T Consensus 140 ~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 140 EAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred HHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence 4566665 99999999999987666542 3 33344 25899999999999885
No 122
>KOG0404|consensus
Probab=95.50 E-value=0.011 Score=48.16 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=45.3
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHH
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEM 54 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l 54 (252)
|.+++.+.|.+|++. .|.+++.+..-++|.|+.+ .+.||.||+|+|+-+..|
T Consensus 76 mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~td~~-~v~~~avI~atGAsAkRl 127 (322)
T KOG0404|consen 76 MRKQSERFGTEIITE-TVSKVDLSSKPFKLWTDAR-PVTADAVILATGASAKRL 127 (322)
T ss_pred HHHHHHhhcceeeee-ehhhccccCCCeEEEecCC-ceeeeeEEEecccceeee
Confidence 456788899999875 6999998888899999998 999999999999988765
No 123
>PLN02676 polyamine oxidase
Probab=95.50 E-value=0.027 Score=51.88 Aligned_cols=42 Identities=24% Similarity=0.432 Sum_probs=38.0
Q ss_pred cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 10 GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 10 ~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
.+|+.+++|++|..++++++|+|.+|.++.||+||+|.....
T Consensus 245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~v 286 (487)
T PLN02676 245 PRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGV 286 (487)
T ss_pred CceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHH
Confidence 679999999999999889999999987799999999997654
No 124
>PRK06116 glutathione reductase; Validated
Probab=95.47 E-value=0.038 Score=50.30 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=41.4
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.++++|++++.+++|++++.++++ +.|.+.+|.++.+|.||+|+|.-.+
T Consensus 216 ~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 216 EEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred HHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence 4567889999999999999876554 7777777768999999999997643
No 125
>PRK12839 hypothetical protein; Provisional
Probab=95.46 E-value=0.039 Score=51.87 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=39.6
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEc-CCeEE-E--EeCCCc-EE-EcCEEEEcCCCChHHH
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKEN-PESVT-I--STKQGD-HL-ESSYALVCAGLQADEM 54 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V--~t~~g~-~i-~A~~VV~AaG~ws~~l 54 (252)
|++.|++.|++|+.+|+|+++..+ ++++. | .+.+|. .+ .++.||+|+|.|+...
T Consensus 220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~ 279 (572)
T PRK12839 220 LLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDV 279 (572)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCH
Confidence 356788899999999999999765 45432 3 444552 24 4589999999999744
No 126
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=95.44 E-value=0.057 Score=51.48 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=44.1
Q ss_pred hCCcE-EEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 7 ELGGE-IRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 7 ~~G~~-i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
..|.. ++.+++|++++.++++++|.+.+|.++.||.||.|.|.||..-..+++.
T Consensus 203 alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR~~l~g~ 257 (668)
T PLN02927 203 AVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGR 257 (668)
T ss_pred hCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHHHHHhcCC
Confidence 34444 5678899999988888998888886899999999999999766656664
No 127
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=95.44 E-value=0.028 Score=51.76 Aligned_cols=52 Identities=6% Similarity=-0.004 Sum_probs=39.2
Q ss_pred hhHHHh-CCcEEEeCceeEEEEEcCCeEE-EEe--CCC-cEEEcCEEEEcCCCChHH
Q psy3952 2 GEEFCE-LGGEIRLNQQVESFKENPESVT-IST--KQG-DHLESSYALVCAGLQADE 53 (252)
Q Consensus 2 ~~~a~~-~G~~i~~~~~V~~i~~~~~~~~-V~t--~~g-~~i~A~~VV~AaG~ws~~ 53 (252)
.+.+++ .|++++++++|+++..+++.+. |.+ .++ ..+.|+.||+|+|.|+..
T Consensus 135 ~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 135 VKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred HHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence 345666 6999999999999987766543 433 222 368999999999999863
No 128
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=95.39 E-value=0.096 Score=47.50 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=46.1
Q ss_pred hHHHhCC---cEEEeCceeEEEEEc-------CCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 3 EEFCELG---GEIRLNQQVESFKEN-------PESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 3 ~~a~~~G---~~i~~~~~V~~i~~~-------~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
+.+++.+ ++++.+++|++++.. +++++|++.+|++++|+.||-|-|.+|. +-+.+|+.
T Consensus 125 ~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~-vR~~~gi~ 192 (437)
T TIGR01989 125 NRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN-VRKAANID 192 (437)
T ss_pred HHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh-hHHHcCCC
Confidence 4455554 899999999999752 3567888888878999999999999984 66677763
No 129
>PRK14694 putative mercuric reductase; Provisional
Probab=95.37 E-value=0.048 Score=49.91 Aligned_cols=50 Identities=22% Similarity=0.278 Sum_probs=42.8
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE 53 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~ 53 (252)
+.+++.|++++.+++|++++.+++.+.+.++++ ++.+|.||+|+|...+.
T Consensus 226 ~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 226 AAFRREGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNT 275 (468)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCCCc
Confidence 456788999999999999988777677777777 89999999999998754
No 130
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=95.35 E-value=0.041 Score=52.57 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=39.6
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeE---EEEe-CCC--cEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESV---TIST-KQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~---~V~t-~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+.+++.|++|++++.|+++..+++++ .+.+ .+| ..|.|+.||+|+|.++.
T Consensus 165 ~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 165 DNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred HHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence 456778899999999999998877653 3443 456 24679999999999874
No 131
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=95.34 E-value=0.033 Score=50.75 Aligned_cols=40 Identities=10% Similarity=0.207 Sum_probs=35.2
Q ss_pred cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCC
Q psy3952 10 GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL 49 (252)
Q Consensus 10 ~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ 49 (252)
++|+++++|++|+..+++|.|.+.+|..+.||.||+|+-+
T Consensus 239 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~ 278 (463)
T PRK12416 239 TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPH 278 (463)
T ss_pred ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCH
Confidence 5799999999999998889998877757999999999843
No 132
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=95.34 E-value=0.05 Score=51.05 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=39.3
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE-E---EeCCC--cEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V---~t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+.+++.|+++++++.|+++..+++++. | ...+| ..+.|+.||+|+|.++.
T Consensus 136 ~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 136 YEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 3457778999999999999988777653 3 22355 25899999999999863
No 133
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=95.31 E-value=0.039 Score=50.15 Aligned_cols=50 Identities=18% Similarity=0.316 Sum_probs=37.7
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCe-E-EEEeCCCc-----EEEcCEEEEcCCCCh
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPES-V-TISTKQGD-----HLESSYALVCAGLQA 51 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~-~-~V~t~~g~-----~i~A~~VV~AaG~ws 51 (252)
++.+++.|++|+++++|++|...+++ + .|++.+|. ++.||.||.|+.+..
T Consensus 220 ~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 220 VDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI 276 (453)
T ss_pred HHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence 45566789999999999999865443 4 36664443 689999999997753
No 134
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=95.22 E-value=0.048 Score=49.60 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=36.6
Q ss_pred cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952 10 GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ 50 (252)
Q Consensus 10 ~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w 50 (252)
++|+.+++|++|+..+++|+|++++|.++.||+||+|+-+.
T Consensus 238 ~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 238 TKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred CeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 78999999999999888899988887689999999998764
No 135
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.21 E-value=0.036 Score=52.19 Aligned_cols=51 Identities=10% Similarity=0.084 Sum_probs=39.2
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE-E---EeCCC--cEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V---~t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+.+++.|+++++++.|+++..+++++. | .+.+| ..+.|+.||+|+|.++.
T Consensus 142 ~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 142 VNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred HHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 4557788999999999999987666542 2 33444 35899999999999874
No 136
>PRK06175 L-aspartate oxidase; Provisional
Probab=95.19 E-value=0.056 Score=49.05 Aligned_cols=50 Identities=14% Similarity=0.048 Sum_probs=36.2
Q ss_pred hHHHh-CCcEEEeCceeEEEEEcCCeE-EEE-eCCC--cEEEcCEEEEcCCCChH
Q psy3952 3 EEFCE-LGGEIRLNQQVESFKENPESV-TIS-TKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~-~V~-t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
+.+++ .|++|+++++|++|..+++++ .|. +.++ ..+.|+.||+|+|.++.
T Consensus 136 ~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 136 KKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred HHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 34544 599999999999998766653 232 2233 25899999999998653
No 137
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=95.18 E-value=0.049 Score=48.90 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=38.6
Q ss_pred CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 9 G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
...++.+++|++|+..+++|+|.+.+|.+++||.||.|.|.||.
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 45678899999999888889988777768999999999999985
No 138
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.16 E-value=0.055 Score=51.57 Aligned_cols=50 Identities=6% Similarity=0.057 Sum_probs=38.4
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEE-EE--e-CCC--cEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVT-IS--T-KQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~--t-~~g--~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|++|++++.|+++..+++++. |. . .+| ..|.|+.||+|+|.++.
T Consensus 178 ~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 178 RQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 356788999999999999987666543 43 2 244 25899999999999874
No 139
>KOG4254|consensus
Probab=95.13 E-value=0.022 Score=51.04 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=46.1
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeE-EEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~-~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+++.|++.|++|++...|.+|.-++++. .|...+|+++.++.||--|++|-.
T Consensus 270 ia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~T 322 (561)
T KOG4254|consen 270 IAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDT 322 (561)
T ss_pred HHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHH
Confidence 3678999999999999999999888775 499999988999999999999964
No 140
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=95.07 E-value=0.065 Score=48.75 Aligned_cols=50 Identities=12% Similarity=0.280 Sum_probs=41.6
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.++++|++++.+++|++++..++++.|.+.+|.++.+|.||+|+|.-.+
T Consensus 215 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 215 RNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred HHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence 34667899999999999998776667777766767999999999998654
No 141
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.99 E-value=0.067 Score=48.74 Aligned_cols=50 Identities=24% Similarity=0.376 Sum_probs=41.8
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|++++.+++|++++.+++++.|.+.+| .++.+|.||+|+|...+
T Consensus 219 ~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 219 KALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence 456788999999999999988777777776555 47999999999998764
No 142
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.98 E-value=0.055 Score=50.71 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=38.9
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEe-CCC--cEEEcC-EEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT-IST-KQG--DHLESS-YALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t-~~g--~~i~A~-~VV~AaG~ws~ 52 (252)
.+.+++.|++++++++|+++..+++++. |.. .+| ..+.|+ .||+|+|.++.
T Consensus 215 ~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 215 LEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 4568889999999999999998777653 332 233 348885 69999999875
No 143
>PRK07804 L-aspartate oxidase; Provisional
Probab=94.92 E-value=0.067 Score=49.99 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=38.2
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcC-CeE---EEE-----eCCC-cEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENP-ESV---TIS-----TKQG-DHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~-~~~---~V~-----t~~g-~~i~A~~VV~AaG~ws~ 52 (252)
.+.+++.|++++.++.|+++..++ +++ .+. +.++ ..+.|+.||+|+|.++.
T Consensus 151 ~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 151 DAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred HHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 356778899999999999998765 343 333 2333 36899999999999874
No 144
>PRK06753 hypothetical protein; Provisional
Probab=94.90 E-value=0.081 Score=46.64 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=43.0
Q ss_pred CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 9 G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
+.+++++++|++++.+++++.|++.+|.++.||.||-|-|.+|. +.+.++.
T Consensus 110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~-vR~~~~~ 160 (373)
T PRK06753 110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK-VRQSVNA 160 (373)
T ss_pred CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH-HHHHhCC
Confidence 46899999999999888889998888878999999999999884 5555553
No 145
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.84 E-value=0.069 Score=48.73 Aligned_cols=50 Identities=22% Similarity=0.468 Sum_probs=40.9
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC---cEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQG---DHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g---~~i~A~~VV~AaG~ws~ 52 (252)
+.++++|++++.+++|++++.+++++.|.+.+| .++.+|.||+|+|...+
T Consensus 221 ~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 221 RALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred HHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence 446788999999999999998777777765443 47999999999998754
No 146
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.84 E-value=0.073 Score=49.91 Aligned_cols=48 Identities=17% Similarity=0.252 Sum_probs=40.3
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|++++ +++|++++.+++.+.|.+.+| .+.+++||+|+|.+..
T Consensus 68 ~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~ 115 (555)
T TIGR03143 68 QQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPR 115 (555)
T ss_pred HHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccC
Confidence 45677899986 678999988777778888888 8999999999999864
No 147
>PRK07236 hypothetical protein; Provisional
Probab=94.78 E-value=0.09 Score=46.75 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=41.5
Q ss_pred CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHc
Q psy3952 9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKS 58 (252)
Q Consensus 9 G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~ 58 (252)
+.+++.+++|++++.++++++|+..+|.+++||.||.|-|.+|. +.+.+
T Consensus 112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~-vR~~l 160 (386)
T PRK07236 112 AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST-VRAQL 160 (386)
T ss_pred CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch-HHHHh
Confidence 46799999999999988888888888878999999999999995 44443
No 148
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=94.75 E-value=0.075 Score=48.81 Aligned_cols=50 Identities=12% Similarity=0.184 Sum_probs=37.6
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcC--CeE----EEEeCCC---cEEEcCEEEEcCCCCh
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENP--ESV----TISTKQG---DHLESSYALVCAGLQA 51 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~--~~~----~V~t~~g---~~i~A~~VV~AaG~ws 51 (252)
++..++.|++|+.+++|++|+.++ +++ .|.+.+| .++.||+||+|+.+|.
T Consensus 226 ~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~ 284 (474)
T TIGR02732 226 LEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPG 284 (474)
T ss_pred HHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHH
Confidence 456778999999999999998754 222 2344322 3589999999999884
No 149
>PLN02507 glutathione reductase
Probab=94.75 E-value=0.09 Score=48.63 Aligned_cols=50 Identities=10% Similarity=0.256 Sum_probs=42.3
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|++++.+++|++++.+++++.|.+.+|.++.+|.|++|.|.-.+
T Consensus 252 ~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 252 RNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPN 301 (499)
T ss_pred HHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCC
Confidence 35678899999999999998776777788777767999999999997654
No 150
>PRK07045 putative monooxygenase; Reviewed
Probab=94.75 E-value=0.09 Score=46.71 Aligned_cols=53 Identities=8% Similarity=0.209 Sum_probs=41.7
Q ss_pred hCCcEEEeCceeEEEEEcCCe--EEEEeCCCcEEEcCEEEEcCCCChHHHHHH-cCC
Q psy3952 7 ELGGEIRLNQQVESFKENPES--VTISTKQGDHLESSYALVCAGLQADEMALK-SGC 60 (252)
Q Consensus 7 ~~G~~i~~~~~V~~i~~~~~~--~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~-~g~ 60 (252)
..|++++.+++|++++..+++ +.|++++|.++.||.||-|-|.+|. +.+. ++.
T Consensus 119 ~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~-vR~~~~~~ 174 (388)
T PRK07045 119 LPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM-IRDDVLRM 174 (388)
T ss_pred CCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH-HHHHhhCC
Confidence 458999999999999986554 3577777878999999999999884 4442 443
No 151
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=94.65 E-value=0.077 Score=49.92 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=35.6
Q ss_pred HHHhC-CcEEEeCceeEEEEEc-CCe-EEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 4 EFCEL-GGEIRLNQQVESFKEN-PES-VTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 4 ~a~~~-G~~i~~~~~V~~i~~~-~~~-~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
.+++. |++++++ .|+++..+ ++. +.|.|.+|..+.|+.||+|+|.|.
T Consensus 105 ~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 105 ALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 34555 7888764 68887665 444 458888887899999999999993
No 152
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=94.65 E-value=0.093 Score=49.32 Aligned_cols=51 Identities=4% Similarity=-0.010 Sum_probs=39.3
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE-E---EeCCC--cEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V---~t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+.+++.|++|++++.|+++..+++++. | .+.+| ..|.|+.||+|+|.++.
T Consensus 126 ~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~ 182 (565)
T TIGR01816 126 YQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGR 182 (565)
T ss_pred HHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCccc
Confidence 3557788999999999999987666543 3 23345 35899999999999874
No 153
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=94.63 E-value=0.11 Score=47.02 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=35.7
Q ss_pred EEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952 11 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ 50 (252)
Q Consensus 11 ~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w 50 (252)
+|+++++|++|+.++++|+|.+.+|.++.||+||+|+-+.
T Consensus 235 ~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~ 274 (451)
T PRK11883 235 TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHP 274 (451)
T ss_pred eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHH
Confidence 7999999999999888898888777689999999998764
No 154
>PRK08275 putative oxidoreductase; Provisional
Probab=94.61 E-value=0.093 Score=49.16 Aligned_cols=51 Identities=10% Similarity=0.167 Sum_probs=38.8
Q ss_pred hhHHHhCCcEEEeCceeEEEEEc-CCeEE-E---EeCCCc--EEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKEN-PESVT-I---STKQGD--HLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V---~t~~g~--~i~A~~VV~AaG~ws~ 52 (252)
.+.+++.|+++++++.|+++..+ ++++. | .+.+|. .+.|+.||+|+|..+.
T Consensus 144 ~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 144 YRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred HHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 45677889999999999999876 55442 3 234552 4899999999999764
No 155
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.60 E-value=0.077 Score=50.05 Aligned_cols=50 Identities=8% Similarity=0.112 Sum_probs=37.2
Q ss_pred hHHHhCCcEEEeCceeEEEEEc-CCeEE-E--EeCCC-cEEEcCE-EEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKEN-PESVT-I--STKQG-DHLESSY-ALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V--~t~~g-~~i~A~~-VV~AaG~ws~ 52 (252)
+.+++.|++|+++++|++|..+ ++++. | ..+.+ ..|.|++ ||+|+|.++.
T Consensus 221 ~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 221 LALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred HHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence 4567889999999999999986 45543 3 33222 3488984 9999999973
No 156
>PRK13748 putative mercuric reductase; Provisional
Probab=94.56 E-value=0.097 Score=49.02 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=42.8
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE 53 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~ 53 (252)
+.+++.|++++++++|++++.+++.+.+.++++ ++.+|.|++|+|...+.
T Consensus 318 ~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 318 AAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred HHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 456788999999999999988777777888778 89999999999987654
No 157
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=94.56 E-value=0.09 Score=49.52 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=37.6
Q ss_pred HHhC-CcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCCChH
Q psy3952 5 FCEL-GGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 5 a~~~-G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+. |++++. +.|+++..+++++. |.|.+|..+.|+.||+|+|.|++
T Consensus 110 L~~~~nV~I~q-~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 110 LENQPNLDLFQ-GEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFLR 158 (618)
T ss_pred HHcCCCcEEEE-eEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcchh
Confidence 4434 888864 67999988777764 88888878999999999998864
No 158
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=94.46 E-value=0.11 Score=49.43 Aligned_cols=51 Identities=8% Similarity=0.119 Sum_probs=38.8
Q ss_pred hhHHHhCCcEEEeCceeEEEEE-cCCeEE-E---EeCCC--cEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKE-NPESVT-I---STKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~-~~~~~~-V---~t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+.+++.|+++++++.++++.. +++++. | ...+| ..+.|+.||+|+|.++.
T Consensus 173 ~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 173 YGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCcc
Confidence 4557788999999999999887 455543 3 23445 35899999999999864
No 159
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.42 E-value=0.11 Score=48.97 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=38.3
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcC----CeEE-E---EeCCC--cEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENP----ESVT-I---STKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~----~~~~-V---~t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+.+++.|+++++++.|+++..++ +++. | ...+| ..|.|+.||+|+|.++.
T Consensus 147 ~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 207 (583)
T PRK08205 147 YQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR 207 (583)
T ss_pred HHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence 455778899999999999998654 4432 3 22345 25899999999999874
No 160
>PRK02106 choline dehydrogenase; Validated
Probab=94.39 E-value=0.1 Score=48.93 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=40.0
Q ss_pred hCCcEEEeCceeEEEEEcCCeEE-EEe--CCC--cEEEcCEEEEcCCCC-hHHHHHHcCC
Q psy3952 7 ELGGEIRLNQQVESFKENPESVT-IST--KQG--DHLESSYALVCAGLQ-ADEMALKSGC 60 (252)
Q Consensus 7 ~~G~~i~~~~~V~~i~~~~~~~~-V~t--~~g--~~i~A~~VV~AaG~w-s~~l~~~~g~ 60 (252)
+.+++|+.++.|++|..++++++ |+. ..+ ..+.|+.||+|||++ +..|+...|+
T Consensus 213 ~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGI 272 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGI 272 (560)
T ss_pred CCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCC
Confidence 45799999999999998866543 443 322 246899999999987 6677766565
No 161
>PRK07512 L-aspartate oxidase; Provisional
Probab=94.36 E-value=0.072 Score=49.42 Aligned_cols=49 Identities=10% Similarity=0.057 Sum_probs=36.3
Q ss_pred hHHHhC-CcEEEeCceeEEEEEcCCeEE-EE--eCCC-cEEEcCEEEEcCCCCh
Q psy3952 3 EEFCEL-GGEIRLNQQVESFKENPESVT-IS--TKQG-DHLESSYALVCAGLQA 51 (252)
Q Consensus 3 ~~a~~~-G~~i~~~~~V~~i~~~~~~~~-V~--t~~g-~~i~A~~VV~AaG~ws 51 (252)
+.+++. |+++++++.|+++..+++++. |. +..+ ..+.|+.||+|+|.++
T Consensus 144 ~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 144 AAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 455554 999999999999887666543 43 3333 2589999999999975
No 162
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.34 E-value=0.11 Score=48.68 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=37.6
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE-E--EeCCC-cEEEc-CEEEEcCCCChHH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT-I--STKQG-DHLES-SYALVCAGLQADE 53 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V--~t~~g-~~i~A-~~VV~AaG~ws~~ 53 (252)
.+.+++.|++|+++++|+++..+++++. | ..+.+ ..+.| +.||+|+|.++..
T Consensus 224 ~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 224 FAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred HHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCcccc
Confidence 3457789999999999999987666543 3 33333 23666 5799999999853
No 163
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.29 E-value=0.12 Score=48.94 Aligned_cols=51 Identities=6% Similarity=0.066 Sum_probs=39.2
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcC-CeEE-EE---eCCC--cEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENP-ESVT-IS---TKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~-~~~~-V~---t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+.+++.|+++++++.|+++..++ +++. |. +.+| ..+.|+.||+|+|.++.
T Consensus 156 ~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 156 YQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 345778899999999999998765 5443 32 3455 36899999999999875
No 164
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.25 E-value=0.12 Score=48.56 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=37.4
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEE-EEe-CCC--cEEEcC-EEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVT-IST-KQG--DHLESS-YALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t-~~g--~~i~A~-~VV~AaG~ws~ 52 (252)
+.+++.|++++++++|++|..+++++. |.. .+| ..|.|+ .||+|+|.+..
T Consensus 216 ~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 216 IGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 456788999999999999988766653 332 233 348897 59999998864
No 165
>PRK08071 L-aspartate oxidase; Provisional
Probab=94.22 E-value=0.078 Score=49.15 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=35.1
Q ss_pred CCcEEEeCceeEEEEEcCCeEE-EEe--CCC--cEEEcCEEEEcCCCChH
Q psy3952 8 LGGEIRLNQQVESFKENPESVT-IST--KQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 8 ~G~~i~~~~~V~~i~~~~~~~~-V~t--~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.|+++++++.|+++..+++.+. |.+ .+| ..+.|+.||+|+|.++.
T Consensus 142 ~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 142 PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 5999999999999987666543 433 233 25899999999999875
No 166
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.22 E-value=0.13 Score=46.59 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=40.1
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.++++|++++.+++|++++.+++.+.+.++.+ ++.+|.||+|+|.-.+
T Consensus 206 ~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~-~i~~D~viva~G~~p~ 254 (438)
T PRK07251 206 QYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDE-TYRFDALLYATGRKPN 254 (438)
T ss_pred HHHHHcCCEEEcCCEEEEEEecCCEEEEEECCe-EEEcCEEEEeeCCCCC
Confidence 346788999999999999988766676666544 8999999999998754
No 167
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.21 E-value=0.12 Score=48.62 Aligned_cols=50 Identities=12% Similarity=0.007 Sum_probs=38.5
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE-EE--e-CCC--cEEEcCEEEEcCCCCh
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT-IS--T-KQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~--t-~~g--~~i~A~~VV~AaG~ws 51 (252)
.+.+++.|+++++++.++++..+++++. |. . .+| ..+.|+.||+|+|.++
T Consensus 143 ~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 143 FERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 3456678999999999999998777653 43 2 233 3589999999999976
No 168
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=94.19 E-value=0.13 Score=47.00 Aligned_cols=51 Identities=24% Similarity=0.356 Sum_probs=42.2
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE 53 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~ 53 (252)
+..+++|++++++++|++++.+++++.|.+.+|.++.+|.|++|+|.-.+.
T Consensus 226 ~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 226 EVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred HHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 346688999999999999987777777776667689999999999987653
No 169
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=94.18 E-value=0.11 Score=46.76 Aligned_cols=43 Identities=28% Similarity=0.470 Sum_probs=38.7
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEeCC-CcEEEcCEEEEcCC
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTISTKQ-GDHLESSYALVCAG 48 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~-g~~i~A~~VV~AaG 48 (252)
+++.|-.|..+++|.+|.+.+++|+|++.+ + ++.||++|++-=
T Consensus 216 a~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~-~~~ad~~i~tiP 259 (450)
T COG1231 216 AKQLGTRILLNEPVRRIDQDGDGVTVTADDVG-QYVADYVLVTIP 259 (450)
T ss_pred HHHhhceEEecCceeeEEEcCCeEEEEeCCcc-eEEecEEEEecC
Confidence 567799999999999999999999999998 7 999999998843
No 170
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.13 E-value=0.11 Score=46.44 Aligned_cols=51 Identities=20% Similarity=0.338 Sum_probs=42.7
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCc-EEEcCEEEEcCCCChHHHHHHc
Q psy3952 4 EFCELGGEIRLNQQVESFKENPESVTISTKQGD-HLESSYALVCAGLQADEMALKS 58 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~-~i~A~~VV~AaG~ws~~l~~~~ 58 (252)
..+++|+++++++.|++++.++ |++.+|. +|.|+.+|=|||.-++.+.+.+
T Consensus 218 ~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 218 ALEKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred HHHHCCCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcCChhhhhc
Confidence 5678999999999999997554 5555564 4999999999999999998764
No 171
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.00 E-value=0.16 Score=47.77 Aligned_cols=51 Identities=12% Similarity=0.069 Sum_probs=38.7
Q ss_pred hhHHHhCCcEEEeCceeEEEEEc-CCeEE-EE---eCCC--cEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKEN-PESVT-IS---TKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V~---t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+.+++.|+++++++.++++..+ ++++. |. ..+| ..|.|+.||+|+|.++.
T Consensus 133 ~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 190 (570)
T PRK05675 133 YQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGR 190 (570)
T ss_pred HHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence 34567789999999999999875 55542 32 3445 35899999999999885
No 172
>PRK06475 salicylate hydroxylase; Provisional
Probab=93.86 E-value=0.18 Score=45.02 Aligned_cols=57 Identities=21% Similarity=0.409 Sum_probs=42.6
Q ss_pred hHHHh-CCcEEEeCceeEEEEEcCCeEEEEe---CCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 3 EEFCE-LGGEIRLNQQVESFKENPESVTIST---KQGDHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~~V~t---~~g~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
+.+.+ .|++++.+++|++++.++++++|+. ++++++.||.||-|-|.+|. +-+.++.
T Consensus 115 ~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~-vR~~~~~ 175 (400)
T PRK06475 115 DACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM-LRAKAGF 175 (400)
T ss_pred HHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh-HHhhcCC
Confidence 34444 4899999999999998888777653 33447999999999999984 4444543
No 173
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.86 E-value=0.13 Score=47.98 Aligned_cols=50 Identities=10% Similarity=0.004 Sum_probs=37.7
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCe-EE-EE--e-CCC--cEEEcCEEEEcCCCCh
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPES-VT-IS--T-KQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~-~~-V~--t-~~g--~~i~A~~VV~AaG~ws 51 (252)
.+.+++.|+++++++.|+++..++++ +. |. . .+| ..+.|+.||+|+|.++
T Consensus 141 ~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 141 MEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 34566789999999999999876554 42 32 2 455 3589999999999976
No 174
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=93.83 E-value=0.18 Score=45.01 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=35.7
Q ss_pred HHHh-CCcEEEeCceeEEEEEcCCeEE-EEeCCCcEEEcCEEEEcCCC
Q psy3952 4 EFCE-LGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGL 49 (252)
Q Consensus 4 ~a~~-~G~~i~~~~~V~~i~~~~~~~~-V~t~~g~~i~A~~VV~AaG~ 49 (252)
.+++ .+.+|++ .+|++|..+++++. |.|.+|..+.|+.||+|+|.
T Consensus 104 ~l~~~~nl~i~~-~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 104 KLESHPNLTIIQ-GEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHTSTTEEEEE-S-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHhcCCCeEEEE-cccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 3444 4788865 68999999888865 99999988999999999999
No 175
>PLN02487 zeta-carotene desaturase
Probab=93.79 E-value=0.15 Score=47.94 Aligned_cols=50 Identities=6% Similarity=0.173 Sum_probs=38.6
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcC--Ce----EEEEe---CCCcEEEcCEEEEcCCCCh
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENP--ES----VTIST---KQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~--~~----~~V~t---~~g~~i~A~~VV~AaG~ws 51 (252)
++..+++|++|+.+++|.+|+.++ ++ +.|++ .++..+.||.||.|+++|.
T Consensus 302 ~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~ 360 (569)
T PLN02487 302 AKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPG 360 (569)
T ss_pred HHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHH
Confidence 456789999999999999999863 22 23555 3344689999999999984
No 176
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=93.74 E-value=0.18 Score=44.95 Aligned_cols=58 Identities=16% Similarity=0.306 Sum_probs=42.9
Q ss_pred hhHHHhCCcEEEeCceeEEEEE-cCCeEEEEe-CCC--cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKE-NPESVTIST-KQG--DHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~-~~~~~~V~t-~~g--~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
.+.+.+.|++++.+++|++++. +++...|+. .+| .+++||.||-|-|.+| .+.++++.
T Consensus 110 l~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S-~vR~~~~~ 171 (392)
T PRK08243 110 MAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHG-VSRASIPA 171 (392)
T ss_pred HHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCC-chhhhcCc
Confidence 3456778999999999999986 455555543 345 3699999999999998 45566654
No 177
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.66 E-value=0.22 Score=43.88 Aligned_cols=54 Identities=19% Similarity=0.179 Sum_probs=42.0
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
+.++++|++++.+++|++++. + .|.+.+|.++.+|.||+|+|...+......|+
T Consensus 199 ~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl 252 (364)
T TIGR03169 199 RLLARRGIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGARAPPWLAESGL 252 (364)
T ss_pred HHHHHCCCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCCChhhHHHHcCC
Confidence 456788999999999998853 2 45666676899999999999887766555553
No 178
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.60 E-value=0.12 Score=34.98 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=28.0
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQG 35 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g 35 (252)
+.++++|+++++++.|++++.++++++|++.+|
T Consensus 48 ~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 48 EYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred HHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 457788999999999999999887776877765
No 179
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=93.60 E-value=0.17 Score=47.01 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=33.5
Q ss_pred CCcEEEeCceeEEEEEcCCeEE-EE-eCCC--cEEEcC-EEEEcCCCCh
Q psy3952 8 LGGEIRLNQQVESFKENPESVT-IS-TKQG--DHLESS-YALVCAGLQA 51 (252)
Q Consensus 8 ~G~~i~~~~~V~~i~~~~~~~~-V~-t~~g--~~i~A~-~VV~AaG~ws 51 (252)
.|++|+++++|+++..+++.+. |. ..+| ..|.|+ .||+|||.+.
T Consensus 187 ~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~ 235 (513)
T PRK12837 187 PNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFE 235 (513)
T ss_pred CCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCcc
Confidence 5999999999999988776653 32 2233 358896 6999999985
No 180
>PRK10262 thioredoxin reductase; Provisional
Probab=93.51 E-value=0.26 Score=42.64 Aligned_cols=48 Identities=13% Similarity=0.267 Sum_probs=38.0
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+...+.++..+ +|++++..++.|++.++.+ .+.+|+||+|+|.+..
T Consensus 71 ~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~~~~ 118 (321)
T PRK10262 71 EHATKFETEIIFD-HINKVDLQNRPFRLTGDSG-EYTCDALIIATGASAR 118 (321)
T ss_pred HHHHHCCCEEEee-EEEEEEecCCeEEEEecCC-EEEECEEEECCCCCCC
Confidence 3455677777664 6888888888888887767 8999999999999853
No 181
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=93.31 E-value=0.25 Score=47.17 Aligned_cols=51 Identities=4% Similarity=0.052 Sum_probs=38.4
Q ss_pred hhHHHhCCcEEEeCceeEEEEEc-CCeEE-EE--e-CCC--cEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKEN-PESVT-IS--T-KQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V~--t-~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+.+.+.|++|+.++.++++..+ ++++. |. . .+| ..+.|+.||+|+|.++.
T Consensus 194 ~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 194 YGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR 251 (635)
T ss_pred HHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc
Confidence 34577789999999999998776 45542 32 2 345 35899999999999874
No 182
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.24 E-value=0.26 Score=46.57 Aligned_cols=51 Identities=10% Similarity=0.026 Sum_probs=38.4
Q ss_pred hhHHHhCCcEEEeCceeEEEEEc-CCeEE-EE---eCCC--cEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKEN-PESVT-IS---TKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V~---t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+.+++.|+++++++.|+++..+ ++++. |. ..+| ..+.|+.||+|+|.++.
T Consensus 150 ~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 150 YQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred HHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 34567789999999999999875 55542 32 3345 35889999999999875
No 183
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.15 E-value=0.3 Score=44.08 Aligned_cols=46 Identities=15% Similarity=0.374 Sum_probs=37.4
Q ss_pred HhCCcEEEeCceeEEEEEcCCeEEEEeCC-CcEEE--cCEEEEcCCCCh
Q psy3952 6 CELGGEIRLNQQVESFKENPESVTISTKQ-GDHLE--SSYALVCAGLQA 51 (252)
Q Consensus 6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~-g~~i~--A~~VV~AaG~ws 51 (252)
++.|++++.+++|++++.+++.+.+.+.. +.++. +|+||+|+|...
T Consensus 55 ~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASP 103 (427)
T ss_pred HhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCC
Confidence 67899999899999999877777776542 33678 999999999854
No 184
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=93.12 E-value=0.35 Score=43.82 Aligned_cols=49 Identities=16% Similarity=0.373 Sum_probs=38.7
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeC-CCcEEE--cCEEEEcCCCCh
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTK-QGDHLE--SSYALVCAGLQA 51 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~-~g~~i~--A~~VV~AaG~ws 51 (252)
+.+++.|++++.+++|++|+.++..+.+... +|.+++ +|++|+|+|...
T Consensus 64 ~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 64 EEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred HHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence 3466789999999999999988877777652 243566 999999999854
No 185
>PLN02568 polyamine oxidase
Probab=93.10 E-value=0.25 Score=46.13 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=37.2
Q ss_pred CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 9 G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
+..|+++++|++|+..+++|+|.+.+|.++.||+||+|.-++.
T Consensus 254 ~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~v 296 (539)
T PLN02568 254 PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGV 296 (539)
T ss_pred CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHH
Confidence 3469999999999999889999988886899999999987643
No 186
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=93.07 E-value=0.26 Score=46.56 Aligned_cols=49 Identities=8% Similarity=0.019 Sum_probs=37.0
Q ss_pred HHHhC-CcEEEeCceeEEEEEcCCeEE----EEeCCC--cEEEcCEEEEcCCCChH
Q psy3952 4 EFCEL-GGEIRLNQQVESFKENPESVT----ISTKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 4 ~a~~~-G~~i~~~~~V~~i~~~~~~~~----V~t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+.+. |+++++++.|+++..+++++. +...+| ..+.|+.||+|+|.++.
T Consensus 142 ~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 197 (582)
T PRK09231 142 TSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR 197 (582)
T ss_pred HhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence 34443 899999999999988766643 233455 36899999999999874
No 187
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=93.07 E-value=0.26 Score=44.53 Aligned_cols=54 Identities=15% Similarity=0.303 Sum_probs=42.8
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
+..++.|++++.+++|+++.. + .|.+.+|.++.||.||.|+|.-.+.+.+.+|+
T Consensus 236 ~~L~~~gV~v~~~~~v~~v~~--~--~v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l 289 (424)
T PTZ00318 236 RRLRRLGVDIRTKTAVKEVLD--K--EVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKV 289 (424)
T ss_pred HHHHHCCCEEEeCCeEEEEeC--C--EEEECCCCEEEccEEEEccCCCCcchhhhcCC
Confidence 456789999999999999863 2 35566776899999999999877777666654
No 188
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.04 E-value=0.27 Score=44.93 Aligned_cols=50 Identities=30% Similarity=0.491 Sum_probs=38.7
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEe--CCC--cEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTIST--KQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t--~~g--~~i~A~~VV~AaG~ws~ 52 (252)
+..+++|++++.+++|++++.+++.+.|.. .+| .++.+|.||+|+|.-.+
T Consensus 221 ~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 221 KQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred HHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 456788999999999999987766665443 244 36999999999997654
No 189
>PRK07846 mycothione reductase; Reviewed
Probab=93.04 E-value=0.27 Score=44.83 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=39.6
Q ss_pred HhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 6 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
.+.|++++.+++|++++.+++++.|.+.+|.++.+|.|++|+|.-.+
T Consensus 217 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 217 ASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred HhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccC
Confidence 35689999999999998777677777777768999999999998764
No 190
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.96 E-value=0.3 Score=43.33 Aligned_cols=44 Identities=7% Similarity=0.113 Sum_probs=35.8
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
++++|++++.+++|++++.+.. .|.++.+ .+.+|+||+|+|...
T Consensus 68 ~~~~gv~~~~~~~V~~id~~~~--~v~~~~~-~~~yd~LVlATG~~~ 111 (377)
T PRK04965 68 AEQFNLRLFPHTWVTDIDAEAQ--VVKSQGN-QWQYDKLVLATGASA 111 (377)
T ss_pred HHhCCCEEECCCEEEEEECCCC--EEEECCe-EEeCCEEEECCCCCC
Confidence 5678999999999999987654 4556555 899999999999864
No 191
>PRK07538 hypothetical protein; Provisional
Probab=92.92 E-value=0.23 Score=44.52 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=39.7
Q ss_pred hHHHh-CCc-EEEeCceeEEEEEcCCeEEEEeCC-----CcEEEcCEEEEcCCCChHHHHHHcC
Q psy3952 3 EEFCE-LGG-EIRLNQQVESFKENPESVTISTKQ-----GDHLESSYALVCAGLQADEMALKSG 59 (252)
Q Consensus 3 ~~a~~-~G~-~i~~~~~V~~i~~~~~~~~V~t~~-----g~~i~A~~VV~AaG~ws~~l~~~~g 59 (252)
+.+.+ .|. +++.+++|++++.+++++.+...+ +.+++||.||-|-|.+|. +.+.++
T Consensus 110 ~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~-vR~~l~ 172 (413)
T PRK07538 110 DAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSA-VRAQLY 172 (413)
T ss_pred HHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHH-Hhhhhc
Confidence 34444 475 699999999999877665544322 247999999999999985 444443
No 192
>PRK06370 mercuric reductase; Validated
Probab=92.84 E-value=0.33 Score=44.32 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=38.3
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEE--e-CCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTIS--T-KQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~--t-~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.++++|++++++++|.+++..++++.|. . +++.++.+|.||+|+|.-.+
T Consensus 220 ~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 220 EILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPN 272 (463)
T ss_pred HHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcC
Confidence 44678899999999999998876655443 2 33347999999999997654
No 193
>PLN02529 lysine-specific histone demethylase 1
Probab=92.76 E-value=0.24 Score=47.88 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=36.0
Q ss_pred CCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952 8 LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ 50 (252)
Q Consensus 8 ~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w 50 (252)
.+..|+++++|++|+..+++|+|+++++ ++.||+||+|.=+.
T Consensus 365 ~~L~IrLnt~V~~I~~~~dGVtV~t~~~-~~~AD~VIVTVPlg 406 (738)
T PLN02529 365 EGVPIFYGKTVDTIKYGNDGVEVIAGSQ-VFQADMVLCTVPLG 406 (738)
T ss_pred hcCCEEcCCceeEEEEcCCeEEEEECCE-EEEcCEEEECCCHH
Confidence 3667999999999999999999988766 89999999997554
No 194
>PRK07208 hypothetical protein; Provisional
Probab=92.76 E-value=0.21 Score=45.67 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=37.5
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE--EEe--CCC--cEEEcCEEEEcCCCCh
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT--IST--KQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~--V~t--~~g--~~i~A~~VV~AaG~ws 51 (252)
++.+++.|++|+++++|++|..+++++. +.. .+| ..+.||+||.|+-++.
T Consensus 225 ~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~ 280 (479)
T PRK07208 225 AEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRE 280 (479)
T ss_pred HHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHH
Confidence 4556678999999999999999877642 322 234 2589999999988763
No 195
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.65 E-value=0.22 Score=43.81 Aligned_cols=46 Identities=7% Similarity=0.044 Sum_probs=36.3
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
.+++.|++++.+ +|++|+.++. +|.+.+|.++..|++|+|+|.-..
T Consensus 63 ~~~~~gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~~ 108 (364)
T TIGR03169 63 LARQAGARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTTP 108 (364)
T ss_pred HHHhcCCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCCC
Confidence 456789999874 8999987765 466667767999999999998653
No 196
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=92.64 E-value=0.33 Score=44.78 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=39.8
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|+++++++.|++++..+++ ..|.+.+|.++.+|.|++|+|.-.+
T Consensus 239 ~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 239 KQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 4577899999999999999876443 5566655658999999999997654
No 197
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.59 E-value=0.31 Score=45.90 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=36.6
Q ss_pred hHHHh-CCcEEEeCceeEEEEEcCCeEE-E---EeCCCc--EEEcCEEEEcCCCCh
Q psy3952 3 EEFCE-LGGEIRLNQQVESFKENPESVT-I---STKQGD--HLESSYALVCAGLQA 51 (252)
Q Consensus 3 ~~a~~-~G~~i~~~~~V~~i~~~~~~~~-V---~t~~g~--~i~A~~VV~AaG~ws 51 (252)
+.+++ .|+++++++.|+++..+++.+. | .+.+|. .+.|+.||+|+|.++
T Consensus 145 ~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 145 SRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred HHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 34444 5999999999999987666542 2 334552 489999999999985
No 198
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=92.56 E-value=0.035 Score=50.27 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=0.0
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEE-EE--eCCC-cEEEcCEEEEcCCCChHHHHHHcCCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVT-IS--TKQG-DHLESSYALVCAGLQADEMALKSGCS 61 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~--t~~g-~~i~A~~VV~AaG~ws~~l~~~~g~~ 61 (252)
+.+++.|++++.++.|.++.+++++++ |. +.+| .+|.|+.||-|+|- ..|+.+.|.+
T Consensus 98 ~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~--g~l~~~aG~~ 158 (428)
T PF12831_consen 98 EMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD--GDLAALAGAP 158 (428)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence 345678999999999999999887643 44 3323 47999999999994 3577777753
No 199
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=92.47 E-value=0.46 Score=42.86 Aligned_cols=56 Identities=25% Similarity=0.420 Sum_probs=42.0
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC 60 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~ 60 (252)
+.+++.|++++.+++|++++.++. + +.+.+|.++.+|.||.|+|...+ .+++.+|+
T Consensus 187 ~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl 243 (427)
T TIGR03385 187 EELKKHEINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPNSELAKDSGL 243 (427)
T ss_pred HHHHHcCCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCCHHHHHhcCc
Confidence 456788999999999999976543 3 33444558999999999998854 45665664
No 200
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=92.39 E-value=0.33 Score=46.11 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=36.2
Q ss_pred HHHhCCcEEEeCceeEEEEEcC---CeE-EEE---eCCC--cEEEcCEEEEcCCCChH
Q psy3952 4 EFCELGGEIRLNQQVESFKENP---ESV-TIS---TKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~---~~~-~V~---t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+++.++++++++.|+++..++ +++ .|. ..+| ..+.|+.||+|+|.|+.
T Consensus 135 ~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 135 AAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred HHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 3556678999999999998754 443 232 2344 35899999999999974
No 201
>PTZ00052 thioredoxin reductase; Provisional
Probab=92.38 E-value=0.38 Score=44.48 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=40.9
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.++++|++++.++.|++++..++.+.|...+|.++.+|.|++|.|.-.+
T Consensus 230 ~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 230 EYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence 45678899999999999998766666666666657999999999998764
No 202
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=92.33 E-value=0.5 Score=43.10 Aligned_cols=47 Identities=21% Similarity=0.396 Sum_probs=39.1
Q ss_pred HhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 6 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
.+.|++++++++|++++.+++++.|.+.+|.++.+|.|++|+|.-.+
T Consensus 220 ~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred HhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence 35689999999999998877777777766767999999999997654
No 203
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.31 E-value=0.36 Score=47.29 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=38.3
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
.++++|++++.+++|+.|+.+. ..|.|.+|.++.+|++|+|+|...
T Consensus 63 ~~~~~gv~~~~g~~V~~Id~~~--k~V~~~~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 63 WYEKHGITLYTGETVIQIDTDQ--KQVITDAGRTLSYDKLILATGSYP 108 (785)
T ss_pred HHHHCCCEEEcCCeEEEEECCC--CEEEECCCcEeeCCEEEECCCCCc
Confidence 4567899999999999998765 356777776799999999999864
No 204
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=92.26 E-value=0.37 Score=43.93 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=40.1
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCC-cEEEcCEEEEcCCCChHH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPES-VTISTKQG-DHLESSYALVCAGLQADE 53 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g-~~i~A~~VV~AaG~ws~~ 53 (252)
+..++.|++++.++.|++++.++++ +.|...+| ..+.+|.|++|+|.-.+.
T Consensus 215 ~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 215 EEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred HHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence 4467889999999999999875443 56666556 469999999999987653
No 205
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=92.24 E-value=0.43 Score=44.67 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=34.8
Q ss_pred hCCcEEEeCceeEEEEEcCCeEE-EEe----C-------------CC-cEEEcCEEEEcCCCChH
Q psy3952 7 ELGGEIRLNQQVESFKENPESVT-IST----K-------------QG-DHLESSYALVCAGLQAD 52 (252)
Q Consensus 7 ~~G~~i~~~~~V~~i~~~~~~~~-V~t----~-------------~g-~~i~A~~VV~AaG~ws~ 52 (252)
+.|++|+++++++++..+++++. |.. . ++ ..|.|+.||+|+|.++.
T Consensus 164 ~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~ 228 (549)
T PRK12834 164 RGLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGG 228 (549)
T ss_pred hCCceEEecCEeeEEEEeCCEEEEEEEEecccccccccccccccccceEEEecCEEEEeCCCccc
Confidence 33699999999999988776653 432 1 12 36899999999999974
No 206
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=92.24 E-value=0.36 Score=44.07 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=38.4
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeC---CCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTK---QGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~---~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|++++.+++|++++.+++.+.|++. ++.++.+|.||+|+|.-.+
T Consensus 215 ~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 215 EALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPN 267 (463)
T ss_pred HHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcC
Confidence 4466889999999999999887666555432 2347999999999997543
No 207
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.10 E-value=0.39 Score=45.73 Aligned_cols=42 Identities=7% Similarity=0.089 Sum_probs=32.5
Q ss_pred cEEEeCceeEEEEEcCCeEE-E---EeCCC--cEEEcCEEEEcCCCCh
Q psy3952 10 GEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 10 ~~i~~~~~V~~i~~~~~~~~-V---~t~~g--~~i~A~~VV~AaG~ws 51 (252)
+++++++.|+++..+++.+. | ...+| ..+.|+.||+|+|.++
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 213 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIG 213 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence 99999999999987666542 2 22344 2589999999999865
No 208
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=92.06 E-value=0.49 Score=43.19 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=39.0
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC-cEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g-~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|++++++++|++++.+++.+.+.++.+ .++.+|.||+|+|.-.+
T Consensus 219 ~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 219 EKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence 456788999999999999987766666654332 36999999999997654
No 209
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=92.06 E-value=0.4 Score=43.97 Aligned_cols=50 Identities=22% Similarity=0.390 Sum_probs=38.9
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeC--CC--cEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTK--QG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~--~g--~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|++++.+++|++++.+++++.|... +| ..+.+|.|++|+|.-.+
T Consensus 232 ~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 232 KAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred HHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccC
Confidence 4566789999999999999887666665432 23 36999999999998654
No 210
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=92.03 E-value=0.29 Score=45.74 Aligned_cols=53 Identities=17% Similarity=0.260 Sum_probs=38.3
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEc--C--CeEE-EEeC-CC-----cEEEcCEEEEcCCCChHH
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKEN--P--ESVT-ISTK-QG-----DHLESSYALVCAGLQADE 53 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~--~--~~~~-V~t~-~g-----~~i~A~~VV~AaG~ws~~ 53 (252)
|.+.++++||+|+++|+|++|..+ + +.++ |... +| ....+|.||+|+|..+..
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 457789999999999999999875 3 2233 4332 12 236789999999988743
No 211
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.89 E-value=0.49 Score=44.75 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=37.9
Q ss_pred hhHHHhCCcEEEeCceeEEEEEc-CCeE-EEE---eCCC--cEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKEN-PESV-TIS---TKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~V~---t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+.+.+.|++++.++.++++..+ ++++ .|. ..+| ..+.|+.||+|+|.++.
T Consensus 155 ~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 212 (591)
T PRK07057 155 YQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGR 212 (591)
T ss_pred HHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCccc
Confidence 34567789999999999999875 4443 232 3345 35889999999999874
No 212
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=91.88 E-value=0.45 Score=46.58 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=45.0
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC 60 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~ 60 (252)
+..+++|+++++++.|++|..++....|.+.+|.++.+|.||.|+|.-.+ .+++..|+
T Consensus 190 ~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 190 RELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCC
Confidence 34678899999999999997655445577777878999999999998753 35555654
No 213
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=91.73 E-value=0.51 Score=44.55 Aligned_cols=49 Identities=8% Similarity=-0.053 Sum_probs=37.1
Q ss_pred HHHh-CCcEEEeCceeEEEEEcCCeEE-E---EeCCC--cEEEcCEEEEcCCCChH
Q psy3952 4 EFCE-LGGEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 4 ~a~~-~G~~i~~~~~V~~i~~~~~~~~-V---~t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+.+ .|++++.++.|+++..+++++. | ...+| ..+.|+.||+|+|.++.
T Consensus 141 ~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 196 (580)
T TIGR01176 141 TSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR 196 (580)
T ss_pred HHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence 4444 4899999999999988776643 2 33455 35899999999999885
No 214
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=91.63 E-value=0.48 Score=43.28 Aligned_cols=48 Identities=23% Similarity=0.416 Sum_probs=39.2
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCc--EEEcCEEEEcCCCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGD--HLESSYALVCAGLQ 50 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~--~i~A~~VV~AaG~w 50 (252)
+..++.|++++++++|+.++..++++.|+..+|. +++||+|++|+|--
T Consensus 222 ~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~ 271 (454)
T COG1249 222 KQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRK 271 (454)
T ss_pred HHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence 4556679999999999999988776777765553 68999999999964
No 215
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=91.54 E-value=0.53 Score=42.04 Aligned_cols=46 Identities=9% Similarity=0.198 Sum_probs=36.9
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
.+++|++++.+++|+.++.+.. .|.+.+|.++.+|++|+|+|....
T Consensus 68 ~~~~~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred HHHCCCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCCC
Confidence 4568999999999999987654 355556658999999999998753
No 216
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=91.50 E-value=0.5 Score=44.82 Aligned_cols=44 Identities=9% Similarity=-0.053 Sum_probs=32.9
Q ss_pred CCcEEEeCceeEEEEEcC-CeEE-EE--e-CCC--cEEEcCEEEEcCCCCh
Q psy3952 8 LGGEIRLNQQVESFKENP-ESVT-IS--T-KQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 8 ~G~~i~~~~~V~~i~~~~-~~~~-V~--t-~~g--~~i~A~~VV~AaG~ws 51 (252)
.|++++++++|+++..++ +++. |. . .+| ..+.|+.||+|+|.++
T Consensus 146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g 196 (603)
T TIGR01811 146 GLVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGYG 196 (603)
T ss_pred CCcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 489999999999998754 4432 43 2 234 3589999999999975
No 217
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=91.50 E-value=0.63 Score=45.95 Aligned_cols=58 Identities=14% Similarity=0.322 Sum_probs=45.2
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCC--eEEEEeCCCcEEEcCEEEEcCCCChHH-HHHHcCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPE--SVTISTKQGDHLESSYALVCAGLQADE-MALKSGC 60 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~--~~~V~t~~g~~i~A~~VV~AaG~ws~~-l~~~~g~ 60 (252)
+..+++|+++++++.|++|..++. ...|.+.+|.++.+|.||+|+|.-.+. |++..|+
T Consensus 195 ~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 195 RKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCc
Confidence 456789999999999999976532 345777778789999999999987644 6666665
No 218
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=91.39 E-value=0.59 Score=42.44 Aligned_cols=46 Identities=11% Similarity=0.137 Sum_probs=37.2
Q ss_pred HhCCcEEEeCceeEEEEEcCCeEEEEeCC-C--cEEEcCEEEEcCCCCh
Q psy3952 6 CELGGEIRLNQQVESFKENPESVTISTKQ-G--DHLESSYALVCAGLQA 51 (252)
Q Consensus 6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~-g--~~i~A~~VV~AaG~ws 51 (252)
++.|++++.+++|++|+.++..+.+.+.+ + .++.+|++|+|+|...
T Consensus 69 ~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 69 DRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASA 117 (438)
T ss_pred HhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCC
Confidence 45799999999999999888878777643 2 2368899999999865
No 219
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=91.12 E-value=0.35 Score=44.05 Aligned_cols=42 Identities=26% Similarity=0.454 Sum_probs=29.8
Q ss_pred EEeCceeEEEEE--cCCeEEEEeCCCcE--EEcCEEEEcCCCChHH
Q psy3952 12 IRLNQQVESFKE--NPESVTISTKQGDH--LESSYALVCAGLQADE 53 (252)
Q Consensus 12 i~~~~~V~~i~~--~~~~~~V~t~~g~~--i~A~~VV~AaG~ws~~ 53 (252)
|..++.|+.+.. +++.|.|++++|.+ +.|++||+|+|.++..
T Consensus 101 i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P 146 (443)
T COG2072 101 IRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEP 146 (443)
T ss_pred EEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCC
Confidence 344555555554 44579999988734 5699999999997744
No 220
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=91.08 E-value=0.19 Score=44.19 Aligned_cols=46 Identities=15% Similarity=0.312 Sum_probs=31.6
Q ss_pred HHHhCCcEEEeCceeEEEEEcCC----eEEEEe----CCCcEEEcCEEEEcCCC
Q psy3952 4 EFCELGGEIRLNQQVESFKENPE----SVTIST----KQGDHLESSYALVCAGL 49 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~----~~~V~t----~~g~~i~A~~VV~AaG~ 49 (252)
.|++....+..+++|++|+...+ .|.|+| +++.++.|+.||+|+|.
T Consensus 104 va~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 104 VAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp HHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred HHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 35556665888999999987553 488887 23458999999999994
No 221
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.02 E-value=0.68 Score=42.39 Aligned_cols=50 Identities=18% Similarity=0.390 Sum_probs=37.8
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEE--e---CCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTIS--T---KQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~--t---~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|++++++++|++++.+++++.+. + .++..+.+|.|++|+|.-.+
T Consensus 223 ~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 223 KALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY 277 (466)
T ss_pred HHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence 45668899999999999998766665543 2 22346999999999997643
No 222
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=90.97 E-value=0.62 Score=46.00 Aligned_cols=46 Identities=9% Similarity=0.145 Sum_probs=37.8
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
..+++|++++.+++|++|+.+. ..|.|.+|.++.+|++|+|+|.+.
T Consensus 68 ~~~~~gI~~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 68 FYEKHGIKVLVGERAITINRQE--KVIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred HHHhCCCEEEcCCEEEEEeCCC--cEEEECCCcEEECCEEEECCCCCc
Confidence 3567899999999999998754 346777776799999999999864
No 223
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=90.78 E-value=0.66 Score=42.75 Aligned_cols=50 Identities=16% Similarity=0.094 Sum_probs=38.5
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC---cEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQG---DHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g---~~i~A~~VV~AaG~ws~ 52 (252)
+.++++|+++++++.+++++..++.+.|+..++ .++.+|.|++|.|.-.+
T Consensus 228 ~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 228 EHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred HHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence 456788999999999999987666655543332 36999999999997654
No 224
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=90.68 E-value=0.52 Score=42.80 Aligned_cols=52 Identities=23% Similarity=0.288 Sum_probs=40.2
Q ss_pred HhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcC
Q psy3952 6 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSG 59 (252)
Q Consensus 6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g 59 (252)
++..++|+.+++|+.|.++..++.+.+.+|..+.||.||+++=++ .+..+++
T Consensus 223 ~~l~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~--~l~~ll~ 274 (444)
T COG1232 223 EKLEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLP--ELARLLG 274 (444)
T ss_pred HHhhhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHH--HHHHHcC
Confidence 344666999999999999977777766666689999999997655 3555554
No 225
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=90.66 E-value=0.47 Score=44.26 Aligned_cols=48 Identities=25% Similarity=0.363 Sum_probs=34.6
Q ss_pred HHhCCc--EEEeCceeEEEEEcC-----CeEEEEeCC-C--cEEEcCEEEEcCCCChH
Q psy3952 5 FCELGG--EIRLNQQVESFKENP-----ESVTISTKQ-G--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 5 a~~~G~--~i~~~~~V~~i~~~~-----~~~~V~t~~-g--~~i~A~~VV~AaG~ws~ 52 (252)
|+..|. .|+++|+|+++++.+ ++|.|+|.+ | .+-..|.||+|+|.++.
T Consensus 94 a~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 94 AEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp HHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSC
T ss_pred HhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCC
Confidence 444444 688999999999854 469988754 3 23457999999999874
No 226
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=90.56 E-value=0.93 Score=37.20 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=39.6
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCC-eEE-EE---e---CCC-----cEEEcCEEEEcCCCChHHHH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPE-SVT-IS---T---KQG-----DHLESSYALVCAGLQADEMA 55 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~-~~~-V~---t---~~g-----~~i~A~~VV~AaG~ws~~l~ 55 (252)
+..|-+.|++|++.+.|+++...++ ++. |. | ..+ ..++|+.||-|+|.-+.-..
T Consensus 116 ~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~ 182 (262)
T COG1635 116 AARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVS 182 (262)
T ss_pred HHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHH
Confidence 4567789999999999999876665 432 21 1 112 36999999999999886543
No 227
>PLN03000 amine oxidase
Probab=90.50 E-value=0.49 Score=46.46 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=35.2
Q ss_pred cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 10 GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 10 ~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
..|+.+++|++|+..+++|+|+++++ +++||+||+|.=+..
T Consensus 391 L~I~Ln~~Vt~I~~~~dgV~V~~~~~-~~~AD~VIvTVPlgV 431 (881)
T PLN03000 391 VPILYEKTVQTIRYGSNGVKVIAGNQ-VYEGDMVLCTVPLGV 431 (881)
T ss_pred CCcccCCcEEEEEECCCeEEEEECCc-EEEeceEEEcCCHHH
Confidence 35889999999999999999988766 899999999975543
No 228
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=90.48 E-value=0.76 Score=42.09 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=37.3
Q ss_pred hHHHhCCcEEEeCceeEEEEE-cCCeEE-EEeCCC--cEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKE-NPESVT-ISTKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~-~~~~~~-V~t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|++++.+++|++++. .++++. +.+.+| .++.+|.||+|+|.-.+
T Consensus 229 ~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 229 RLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred HHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 446788999999999999985 233443 444455 36999999999998654
No 229
>PRK07395 L-aspartate oxidase; Provisional
Probab=90.42 E-value=0.45 Score=44.61 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=34.7
Q ss_pred hHHHh-CCcEEEeCceeEEEEEcC--CeEE-EE-eCCCc--EEEcCEEEEcCCCCh
Q psy3952 3 EEFCE-LGGEIRLNQQVESFKENP--ESVT-IS-TKQGD--HLESSYALVCAGLQA 51 (252)
Q Consensus 3 ~~a~~-~G~~i~~~~~V~~i~~~~--~~~~-V~-t~~g~--~i~A~~VV~AaG~ws 51 (252)
+.+++ .|++|++++.|+++..++ +.+. |. ..+|. .+.|+.||+|+|.++
T Consensus 142 ~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~ 197 (553)
T PRK07395 142 EQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG 197 (553)
T ss_pred HHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence 34444 499999999999998763 4432 32 23442 389999999999964
No 230
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=90.36 E-value=0.69 Score=41.24 Aligned_cols=57 Identities=11% Similarity=0.140 Sum_probs=40.8
Q ss_pred hhHHHhCCcEEEeCceeEEEEE-cCCeEEEEeC-CC--cEEEcCEEEEcCCCChHHHHHHcC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKE-NPESVTISTK-QG--DHLESSYALVCAGLQADEMALKSG 59 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~-~~~~~~V~t~-~g--~~i~A~~VV~AaG~ws~~l~~~~g 59 (252)
.+.+.+.|++++.+++++.+.. +++.+.|+.. +| .+++||.||-|-|.+|. +.++++
T Consensus 110 ~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~-VR~~l~ 170 (390)
T TIGR02360 110 MEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGV-SRASIP 170 (390)
T ss_pred HHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchh-hHHhcC
Confidence 4556778999999998888765 4444455442 45 26999999999999985 555554
No 231
>PLN02576 protoporphyrinogen oxidase
Probab=90.31 E-value=0.71 Score=42.44 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=33.5
Q ss_pred HhCC-cEEEeCceeEEEEEcCCe-EEEE--eCCC-cEEEcCEEEEcCCC
Q psy3952 6 CELG-GEIRLNQQVESFKENPES-VTIS--TKQG-DHLESSYALVCAGL 49 (252)
Q Consensus 6 ~~~G-~~i~~~~~V~~i~~~~~~-~~V~--t~~g-~~i~A~~VV~AaG~ 49 (252)
+..+ .+|+.+++|++|+..+++ |.|. +.+| .++.||+||+|.-+
T Consensus 247 ~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~ 295 (496)
T PLN02576 247 KRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPL 295 (496)
T ss_pred HhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCH
Confidence 3445 689999999999998776 7654 3344 26999999999743
No 232
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=90.21 E-value=0.32 Score=38.60 Aligned_cols=48 Identities=31% Similarity=0.500 Sum_probs=37.3
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCe-----EEE---EeCCCcEEEcCEEEEcCCCCh
Q psy3952 4 EFCELGGEIRLNQQVESFKENPES-----VTI---STKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~-----~~V---~t~~g~~i~A~~VV~AaG~ws 51 (252)
.++..+++++.+++|.++....+. +.+ .+.++.++.+|+||+|+|...
T Consensus 67 ~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~ 122 (201)
T PF07992_consen 67 QLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP 122 (201)
T ss_dssp HHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE
T ss_pred ccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcccc
Confidence 456789999888999999988773 222 445555899999999999654
No 233
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=89.91 E-value=6 Score=35.15 Aligned_cols=71 Identities=11% Similarity=-0.008 Sum_probs=42.3
Q ss_pred HHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEecCCeEEEeccCCc--cccchHHHHHHHHHHHHhhcccc
Q psy3952 171 NELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSP--AATSSLAIAKHILNELRREFKLD 247 (252)
Q Consensus 171 ~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~~~~~~~~G~~~~--G~t~a~~~g~~va~~i~~~~~~~ 247 (252)
+.+.++|..... -....|- ..|....+... .+|++ ++|+|+..|+.+. -|-++...||-+|.++.++|..+
T Consensus 279 ~~L~~lF~~~~~-~~~~~W~-AYP~~~p~~~~--~~~~L--~~glyY~n~iE~~aStME~sai~akNvA~L~~~~~~~~ 351 (368)
T PF07156_consen 279 EFLSQLFSSYSE-VKRKEWL-AYPHYSPPEKF--PPFKL--HDGLYYTNAIESAASTMETSAIAAKNVALLIYDRWNGD 351 (368)
T ss_pred HHHHHHhhccCc-eeeeeEe-CCCCCCCCCCC--CCeEe--eCCeeEchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345556655432 2234673 35543222221 24455 5799999998542 24567888999999998886553
No 234
>PLN02661 Putative thiazole synthesis
Probab=88.88 E-value=1.3 Score=38.97 Aligned_cols=46 Identities=11% Similarity=0.118 Sum_probs=34.2
Q ss_pred hCCcEEEeCceeEEEEEcCCeE-EEEe-------C-CC------cEEEcCEEEEcCCCChH
Q psy3952 7 ELGGEIRLNQQVESFKENPESV-TIST-------K-QG------DHLESSYALVCAGLQAD 52 (252)
Q Consensus 7 ~~G~~i~~~~~V~~i~~~~~~~-~V~t-------~-~g------~~i~A~~VV~AaG~ws~ 52 (252)
+.|+++++++.|+++..+++++ .|.+ + ++ ..|+|+.||+|+|....
T Consensus 185 ~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~ 245 (357)
T PLN02661 185 RPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGP 245 (357)
T ss_pred cCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCc
Confidence 4699999999999998877653 2331 1 11 26899999999997653
No 235
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=88.88 E-value=1.2 Score=40.80 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=35.2
Q ss_pred hHHHhCCcEEEeCceeEEEE--EcCCeEEEEeCCCc--EEEcCEEEEcCCCCh
Q psy3952 3 EEFCELGGEIRLNQQVESFK--ENPESVTISTKQGD--HLESSYALVCAGLQA 51 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~--~~~~~~~V~t~~g~--~i~A~~VV~AaG~ws 51 (252)
+.+++.|++++.++ ++.++ .+.+.+.|.+.+|. ++.+|+||+|+|.-.
T Consensus 100 ~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p 151 (466)
T PRK07845 100 ARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASP 151 (466)
T ss_pred HHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCC
Confidence 34567799998864 44443 44566788877774 699999999999864
No 236
>PLN02815 L-aspartate oxidase
Probab=88.67 E-value=0.82 Score=43.30 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=35.4
Q ss_pred hHHHhC-CcEEEeCceeEEEEEc-CCe---E-EEE---eCCC--cEEEcCEEEEcCCCChH
Q psy3952 3 EEFCEL-GGEIRLNQQVESFKEN-PES---V-TIS---TKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~-G~~i~~~~~V~~i~~~-~~~---~-~V~---t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
+.+++. |++|++++.++++..+ +++ + .|. ..+| ..+.|+.||+|+|.++.
T Consensus 163 ~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 223 (594)
T PLN02815 163 EAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH 223 (594)
T ss_pred HHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence 344444 9999999999998874 331 3 232 3345 35789999999998874
No 237
>PRK09077 L-aspartate oxidase; Provisional
Probab=88.53 E-value=1.2 Score=41.61 Aligned_cols=50 Identities=6% Similarity=0.107 Sum_probs=35.5
Q ss_pred hHHHhC-CcEEEeCceeEEEEEcC------CeEE-EE--e-CCC--cEEEcCEEEEcCCCChH
Q psy3952 3 EEFCEL-GGEIRLNQQVESFKENP------ESVT-IS--T-KQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~-G~~i~~~~~V~~i~~~~------~~~~-V~--t-~~g--~~i~A~~VV~AaG~ws~ 52 (252)
+.+++. |+++++++.|+++..++ +++. |. . .+| ..|.|+.||+|+|.++.
T Consensus 146 ~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~ 208 (536)
T PRK09077 146 ERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASK 208 (536)
T ss_pred HHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCC
Confidence 344444 89999999999987643 4432 32 2 334 35899999999999873
No 238
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=88.08 E-value=1.3 Score=45.44 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=34.4
Q ss_pred CCcEEEeCceeEEEEEcC-----C----eEE-E--EeC---CC--cEEEcCEEEEcCCCChH
Q psy3952 8 LGGEIRLNQQVESFKENP-----E----SVT-I--STK---QG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 8 ~G~~i~~~~~V~~i~~~~-----~----~~~-V--~t~---~g--~~i~A~~VV~AaG~ws~ 52 (252)
.|++|+++++|+++..++ + ++. | +.. +| ..|.|+.||+|+|.++.
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~ 621 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN 621 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence 599999999999998753 2 332 3 333 45 35899999999999885
No 239
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=87.90 E-value=0.73 Score=40.03 Aligned_cols=50 Identities=22% Similarity=0.251 Sum_probs=42.9
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE-EEeCCC--cEEEcCEEEEcCCCCh
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT-ISTKQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t~~g--~~i~A~~VV~AaG~ws 51 (252)
-++.++.|+.+..+-+|.+.+..+++++ |.|.++ ..+.|+..|+|+|..-
T Consensus 265 ~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 265 QRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFF 317 (421)
T ss_pred HHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccc
Confidence 3567899999999999999999999986 888765 3589999999999863
No 240
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=87.88 E-value=1.3 Score=40.20 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=40.2
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGC 60 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~ 60 (252)
+.+++.|++++.+++|++++. . .|.+.+|..+.+|.|+.|+|.-.+ .+++..|+
T Consensus 197 ~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl 251 (438)
T PRK13512 197 DELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNI 251 (438)
T ss_pred HHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcChHHHHhcCc
Confidence 456788999999999999963 2 355555657999999999997653 34555554
No 241
>KOG1346|consensus
Probab=87.85 E-value=0.45 Score=42.58 Aligned_cols=58 Identities=26% Similarity=0.408 Sum_probs=47.3
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh-HHHHHHcCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGC 60 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws-~~l~~~~g~ 60 (252)
+..++.|+.++-+..|.++.+.-+...+..++|.++.+|.||+|.|--- .+|+...|+
T Consensus 401 ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgL 459 (659)
T KOG1346|consen 401 EKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGL 459 (659)
T ss_pred HHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccc
Confidence 4567889999999999999887777888999998999999999999763 345554444
No 242
>PTZ00058 glutathione reductase; Provisional
Probab=87.59 E-value=1.9 Score=40.59 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=37.8
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCC-eEEEE-eCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPE-SVTIS-TKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~-~~~V~-t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|++++.++.|.+++.+++ ++.+. ++++.++.+|.|++|+|.-.+
T Consensus 286 ~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 286 NDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred HHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence 456788999999999999987543 45544 333446999999999997643
No 243
>PLN02976 amine oxidase
Probab=87.45 E-value=1.2 Score=46.16 Aligned_cols=42 Identities=26% Similarity=0.357 Sum_probs=35.0
Q ss_pred CcEEEeCceeEEEEEc----------CCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952 9 GGEIRLNQQVESFKEN----------PESVTISTKQGDHLESSYALVCAGLQ 50 (252)
Q Consensus 9 G~~i~~~~~V~~i~~~----------~~~~~V~t~~g~~i~A~~VV~AaG~w 50 (252)
+..|+++++|++|... +++|.|.|.+|.+|.||+||++.=+.
T Consensus 945 ~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLG 996 (1713)
T PLN02976 945 GLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLG 996 (1713)
T ss_pred hCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHH
Confidence 4569999999999884 35688999888789999999997554
No 244
>PLN02546 glutathione reductase
Probab=87.33 E-value=1.8 Score=40.74 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=39.0
Q ss_pred hHHHhCCcEEEeCceeEEEEEcC-CeEEEEeCCCcEEE-cCEEEEcCCCChHH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENP-ESVTISTKQGDHLE-SSYALVCAGLQADE 53 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~-~~~~V~t~~g~~i~-A~~VV~AaG~ws~~ 53 (252)
+..+++|++++.+++|++++..+ +.+.|.++++ ++. +|.||+|.|.-.+.
T Consensus 301 ~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g-~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 301 EQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKG-TVEGFSHVMFATGRKPNT 352 (558)
T ss_pred HHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCe-EEEecCEEEEeeccccCC
Confidence 45678899999999999998643 4456777777 555 89999999987654
No 245
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=87.03 E-value=2.2 Score=40.00 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=40.6
Q ss_pred HhCCcEEEeCceeEEEEEcCCeEE---EEeCCC----cEEEcCEEEEcCCCC-hHHHHHHcCC
Q psy3952 6 CELGGEIRLNQQVESFKENPESVT---ISTKQG----DHLESSYALVCAGLQ-ADEMALKSGC 60 (252)
Q Consensus 6 ~~~G~~i~~~~~V~~i~~~~~~~~---V~t~~g----~~i~A~~VV~AaG~w-s~~l~~~~g~ 60 (252)
+..+.+|.+++.|++|..++++++ +...++ ..+.++.||+|||++ +..|+...|+
T Consensus 214 ~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgi 276 (542)
T COG2303 214 KRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGI 276 (542)
T ss_pred cCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCC
Confidence 444699999999999999988754 333322 136788999999988 5666666664
No 246
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=86.81 E-value=1.8 Score=36.43 Aligned_cols=50 Identities=10% Similarity=0.165 Sum_probs=35.7
Q ss_pred hHHHhC-CcEEEeCceeEEEEEcCCeEEEEe-----CCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCEL-GGEIRLNQQVESFKENPESVTIST-----KQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~-G~~i~~~~~V~~i~~~~~~~~V~t-----~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+++. |++++.++.+++++.++....|+. +++.++.+|.||.|+|.-.+
T Consensus 184 ~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~ 239 (300)
T TIGR01292 184 DRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPN 239 (300)
T ss_pred HHHHhCCCeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCC
Confidence 445666 999999999999986553222321 23346999999999996553
No 247
>PLN02785 Protein HOTHEAD
Probab=86.71 E-value=2.5 Score=40.04 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=37.9
Q ss_pred HHHhCCcEEEeCceeEEEEEcCC----eE-EEE--eCCCcEE-------EcCEEEEcCCC-ChHHHHHHcCC
Q psy3952 4 EFCELGGEIRLNQQVESFKENPE----SV-TIS--TKQGDHL-------ESSYALVCAGL-QADEMALKSGC 60 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~----~~-~V~--t~~g~~i-------~A~~VV~AaG~-ws~~l~~~~g~ 60 (252)
.+...+++++.++.|++|..+++ +. .|+ ..+|... .++-||+|||+ .+..|+...|+
T Consensus 229 ~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGI 300 (587)
T PLN02785 229 AGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGI 300 (587)
T ss_pred hcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCC
Confidence 34467899999999999987642 33 243 3345222 24679999987 46677666554
No 248
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=86.52 E-value=1.4 Score=43.14 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=33.0
Q ss_pred EEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 11 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 11 ~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
.|+++++|+.|...+++|.|.+ +|.+++||+||+|.=+..
T Consensus 448 ~I~ln~~V~~I~~~~dgV~V~~-~G~~~~AD~VIvTvPl~v 487 (808)
T PLN02328 448 PIFYERTVESIRYGVDGVIVYA-GGQEFHGDMVLCTVPLGV 487 (808)
T ss_pred CcccCCeeEEEEEcCCeEEEEe-CCeEEEcCEEEECCCHHH
Confidence 4889999999999888888854 454899999999976554
No 249
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=86.29 E-value=2 Score=39.17 Aligned_cols=50 Identities=14% Similarity=0.065 Sum_probs=37.4
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCe---EEEE-----------------eCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPES---VTIS-----------------TKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~---~~V~-----------------t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|+++++++.++++..++++ +.+. ++++.++.||.||.|.|.-.+
T Consensus 319 ~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~ 388 (457)
T PRK11749 319 EHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPN 388 (457)
T ss_pred HHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCC
Confidence 4577899999999999999876543 3332 123346999999999998665
No 250
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=86.03 E-value=1.8 Score=39.15 Aligned_cols=46 Identities=11% Similarity=0.032 Sum_probs=35.3
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEe--------CCCcEEEcCEEEEcCCCCh
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTIST--------KQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t--------~~g~~i~A~~VV~AaG~ws 51 (252)
++..|+++.. .+|++|+.++..+.+.+ ++|.++.+|++|+|+|.-.
T Consensus 72 ~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 72 LAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred hccCCeEEEE-EEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCccc
Confidence 4556888765 68999998887776632 3455799999999999964
No 251
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=85.99 E-value=2.3 Score=39.06 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=40.3
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEE-EE-----eCC-------C--cEEEcCEEEEcCCCChH--HHHHHcCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVT-IS-----TKQ-------G--DHLESSYALVCAGLQAD--EMALKSGC 60 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~-V~-----t~~-------g--~~i~A~~VV~AaG~ws~--~l~~~~g~ 60 (252)
+.+++.|+++++++.+++|..++++++ |+ ..+ | .++.+|.||+|.|.-.+ .+++.+|+
T Consensus 337 ~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl 411 (471)
T PRK12810 337 SNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGV 411 (471)
T ss_pred HHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCc
Confidence 456788999999999999976555543 32 111 1 46999999999996653 35544443
No 252
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=85.96 E-value=1.9 Score=40.36 Aligned_cols=54 Identities=11% Similarity=0.209 Sum_probs=37.3
Q ss_pred hCCcEEEeCceeEEEEEcC---CeEE---EEeC-CC--cEEEcCEEEEcCCC-ChHHHHHHcCC
Q psy3952 7 ELGGEIRLNQQVESFKENP---ESVT---ISTK-QG--DHLESSYALVCAGL-QADEMALKSGC 60 (252)
Q Consensus 7 ~~G~~i~~~~~V~~i~~~~---~~~~---V~t~-~g--~~i~A~~VV~AaG~-ws~~l~~~~g~ 60 (252)
.-.++++.++.|++|..++ ++++ +.+. +| .++.|+.||+|||+ .+..|+...+.
T Consensus 226 ~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S~~ 289 (544)
T TIGR02462 226 SERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNSGF 289 (544)
T ss_pred CCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhCCC
Confidence 3359999999999998754 2332 3332 23 45999999999974 56677665543
No 253
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=85.55 E-value=0.68 Score=39.17 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=37.5
Q ss_pred hCCcEEEeCceeEEEEEcCCeEEEEeCCC-cEEEcCEEEEcC-CCChHHH
Q psy3952 7 ELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCA-GLQADEM 54 (252)
Q Consensus 7 ~~G~~i~~~~~V~~i~~~~~~~~V~t~~g-~~i~A~~VV~Aa-G~ws~~l 54 (252)
....+|+++|+|+.+-..++.|++++++| .+..+|.||+|. -+.+..|
T Consensus 115 AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~L 164 (331)
T COG3380 115 ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATL 164 (331)
T ss_pred hccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhh
Confidence 34677889999999999999999999655 468999999996 3334333
No 254
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=85.26 E-value=4.6 Score=38.66 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=41.5
Q ss_pred hhHHHhCCc--EEEeCceeEEEEEcCC---eEEEEe--C----CC--cEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 2 GEEFCELGG--EIRLNQQVESFKENPE---SVTIST--K----QG--DHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 2 ~~~a~~~G~--~i~~~~~V~~i~~~~~---~~~V~t--~----~g--~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
.+.+++.|+ ++..+++|++++.++. .++|+. . +| .+++|++||=|=|+.|. +-+.+|+
T Consensus 148 ~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~-VR~~lgi 218 (634)
T PRK08294 148 LDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSR-VRKAIGR 218 (634)
T ss_pred HHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchH-HHHhcCC
Confidence 345666664 7788999999987642 355443 2 34 47999999999999884 6667776
No 255
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=85.20 E-value=2.5 Score=34.64 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=34.9
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcC-CeEE-EEe------CCC-----cEEEcCEEEEcCCCChH
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENP-ESVT-IST------KQG-----DHLESSYALVCAGLQAD 52 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~-~~~~-V~t------~~g-----~~i~A~~VV~AaG~ws~ 52 (252)
+..|.+.|++|++.+.|+++...+ +++. |.+ ..| ..++|+.||-|+|.-+.
T Consensus 103 ~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~ 166 (230)
T PF01946_consen 103 ASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAE 166 (230)
T ss_dssp HHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSS
T ss_pred HHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchH
Confidence 456667999999999999987655 5653 322 122 37999999999999873
No 256
>KOG1399|consensus
Probab=84.88 E-value=1.9 Score=39.30 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=36.8
Q ss_pred HHhCCc--EEEeCceeEEEEEcC-CeEEEEeCCC----cEEEcCEEEEcCCCCh
Q psy3952 5 FCELGG--EIRLNQQVESFKENP-ESVTISTKQG----DHLESSYALVCAGLQA 51 (252)
Q Consensus 5 a~~~G~--~i~~~~~V~~i~~~~-~~~~V~t~~g----~~i~A~~VV~AaG~ws 51 (252)
|+..+. .|.++++|..++... +.|+|.+.++ ...-+|.||+|+|-+.
T Consensus 100 A~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~ 153 (448)
T KOG1399|consen 100 AKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYV 153 (448)
T ss_pred HHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcC
Confidence 444443 688899999999888 7899876432 3688999999999996
No 257
>PLN02985 squalene monooxygenase
Probab=84.70 E-value=3.5 Score=38.39 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=37.6
Q ss_pred hHHHhC-CcEEEeCceeEEEEEcCCe---EEEEeCCCc--EEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 3 EEFCEL-GGEIRLNQQVESFKENPES---VTISTKQGD--HLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 3 ~~a~~~-G~~i~~~~~V~~i~~~~~~---~~V~t~~g~--~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
+.+++. |+++..+ +|+++..+++. +++.+.+|. ++.||.||.|.|.+|. +.+.++.
T Consensus 155 ~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~-vR~~l~~ 216 (514)
T PLN02985 155 QKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSN-LRRSLND 216 (514)
T ss_pred HHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchH-HHHHhcc
Confidence 445554 7888765 67777666554 334444553 3679999999999985 5566654
No 258
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=83.39 E-value=2.6 Score=36.91 Aligned_cols=51 Identities=12% Similarity=-0.018 Sum_probs=36.7
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEE--------------------eCCCcEEEcCEEEEcCCCChHH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTIS--------------------TKQGDHLESSYALVCAGLQADE 53 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~--------------------t~~g~~i~A~~VV~AaG~ws~~ 53 (252)
+.++++|+++++++.+++++.+++...|+ ++++.++.+|.||.|+|.-.+.
T Consensus 218 ~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~ 288 (352)
T PRK12770 218 ERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP 288 (352)
T ss_pred HHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc
Confidence 45678899999999999987554322222 2233479999999999987654
No 259
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.69 E-value=2 Score=38.34 Aligned_cols=44 Identities=11% Similarity=0.199 Sum_probs=35.7
Q ss_pred hCCcEEEeCceeEEEEEcCCe-EEEE-----eCCCcEEEcCEEEEcCCCC
Q psy3952 7 ELGGEIRLNQQVESFKENPES-VTIS-----TKQGDHLESSYALVCAGLQ 50 (252)
Q Consensus 7 ~~G~~i~~~~~V~~i~~~~~~-~~V~-----t~~g~~i~A~~VV~AaG~w 50 (252)
+..+.++..|+|..++.++++ +.+. |++..++++|.||+|+|..
T Consensus 290 ~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 290 KPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYR 339 (436)
T ss_pred CCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence 457889999999999998866 6653 3444679999999999986
No 260
>PRK10262 thioredoxin reductase; Provisional
Probab=82.60 E-value=2.4 Score=36.54 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=36.4
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCeE---EEEeC----CCcEEEcCEEEEcCCCChHHH
Q psy3952 4 EFCELGGEIRLNQQVESFKENPESV---TISTK----QGDHLESSYALVCAGLQADEM 54 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~~---~V~t~----~g~~i~A~~VV~AaG~ws~~l 54 (252)
..++.|++++.++.|+++..++++. ++... +..++.+|.||.|.|.-.+.-
T Consensus 194 ~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~ 251 (321)
T PRK10262 194 KVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred hccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh
Confidence 3457899999999999998665433 33322 123699999999999876543
No 261
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=82.36 E-value=2.8 Score=38.34 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=33.6
Q ss_pred HHhCCcEEEeCceeEEEEEc-----CCeEEEEeCCC--cEEEcCEEEEcCCCCh
Q psy3952 5 FCELGGEIRLNQQVESFKEN-----PESVTISTKQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~-----~~~~~V~t~~g--~~i~A~~VV~AaG~ws 51 (252)
+++.|++++.+ .++.+... ++.+.|.+.+| .++.+|+||+|+|...
T Consensus 102 ~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p 154 (472)
T PRK05976 102 LKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRP 154 (472)
T ss_pred HHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCC
Confidence 45679999886 45555443 33677887666 4699999999999854
No 262
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=81.92 E-value=3.6 Score=38.99 Aligned_cols=43 Identities=5% Similarity=-0.123 Sum_probs=31.7
Q ss_pred cEEEeCceeEEEEEc-CCeEE-EE--e-CCC--cEEEcCEEEEcCCCChH
Q psy3952 10 GEIRLNQQVESFKEN-PESVT-IS--T-KQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 10 ~~i~~~~~V~~i~~~-~~~~~-V~--t-~~g--~~i~A~~VV~AaG~ws~ 52 (252)
+++++++.++++..+ ++.+. |. . ..| ..+.|+.||+|+|.++.
T Consensus 152 i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 201 (589)
T PRK08641 152 VTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI 201 (589)
T ss_pred cEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence 789999999998874 45442 33 2 234 24889999999999874
No 263
>KOG2404|consensus
Probab=81.37 E-value=1.9 Score=37.50 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=33.4
Q ss_pred CcEEEeCceeEEEEEcCCeEE-EE--eCCC--cEEEcCEEEEcCCCCh
Q psy3952 9 GGEIRLNQQVESFKENPESVT-IS--TKQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 9 G~~i~~~~~V~~i~~~~~~~~-V~--t~~g--~~i~A~~VV~AaG~ws 51 (252)
-++|..+++|++|.++.+++. |+ ...| ..+.++.||+|+|.++
T Consensus 159 ~~ki~~nskvv~il~n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNNGKVSGVEYMDASGEKSKIIGDAVVLATGGFG 206 (477)
T ss_pred HHhhhhcceeeeeecCCCeEEEEEEEcCCCCccceecCceEEecCCcC
Confidence 467889999999998887754 43 3333 4689999999999886
No 264
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=81.17 E-value=2.2 Score=38.89 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=29.0
Q ss_pred hCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 7 ~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
++|++++.++.+.. +..+|++.+|.++++|+||+|+|...
T Consensus 104 ~~gv~~~~g~~~~~-----~~~~V~~~~g~~~~~d~lIiATGs~p 143 (452)
T TIGR03452 104 TPNIDVYDGHARFV-----GPRTLRTGDGEEITGDQIVIAAGSRP 143 (452)
T ss_pred cCCeEEEEEEEEEe-----cCCEEEECCCcEEEeCEEEEEECCCC
Confidence 37899888775443 22456666665799999999999754
No 265
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=80.76 E-value=3.7 Score=37.68 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=36.5
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCeEEEEeC--CC--cEEEcCEEEEcCCCChH
Q psy3952 4 EFCELGGEIRLNQQVESFKENPESVTISTK--QG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~--~g--~~i~A~~VV~AaG~ws~ 52 (252)
.+++. ++++.++.|++++..++++.|+.. +| .++.+|.||+|+|.-.+
T Consensus 224 ~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 224 RIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred HHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence 34566 999999999999877766665432 22 36999999999998654
No 266
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=80.15 E-value=3.7 Score=37.70 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=31.5
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCCh
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~ws 51 (252)
+++.|++++.+. +.- .+...+.|.+.+| .++.+|+||+|+|...
T Consensus 103 ~~~~gV~~~~g~-a~~--~~~~~v~v~~~~g~~~~~~~d~lViATGs~p 148 (471)
T PRK06467 103 AKGRKVTVVNGL-GKF--TGGNTLEVTGEDGKTTVIEFDNAIIAAGSRP 148 (471)
T ss_pred HHhCCCEEEEEE-EEE--ccCCEEEEecCCCceEEEEcCEEEEeCCCCC
Confidence 456799998765 332 2445577877665 3699999999999753
No 267
>KOG1336|consensus
Probab=79.62 E-value=3.6 Score=37.43 Aligned_cols=49 Identities=24% Similarity=0.409 Sum_probs=40.9
Q ss_pred hHHHhCCcEEEeCceeEEEEEcC-CeEE-EEeCCCcEEEcCEEEEcCCCCh
Q psy3952 3 EEFCELGGEIRLNQQVESFKENP-ESVT-ISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~-~~~~-V~t~~g~~i~A~~VV~AaG~ws 51 (252)
...+++|+++..++.+.+++... +.+. |.+.+|.++.||-||++.|+-.
T Consensus 263 ~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p 313 (478)
T KOG1336|consen 263 DYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP 313 (478)
T ss_pred HHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence 34678999999999999998765 4454 8888888899999999999853
No 268
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=77.91 E-value=5.7 Score=39.65 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=32.0
Q ss_pred CcEEEeCceeEEEEEcCCeEE-E---EeCCC--cEEEcCEEEEcCCCChH
Q psy3952 9 GGEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 9 G~~i~~~~~V~~i~~~~~~~~-V---~t~~g--~~i~A~~VV~AaG~ws~ 52 (252)
++++.+++.++++..+++++. | .+.+| ..|.|+.||+|+|+++.
T Consensus 157 ~i~~~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 206 (897)
T PRK13800 157 RIRIENRLMPVRVLTEGGRAVGAAALNTRTGEFVTVGAKAVILATGPCGR 206 (897)
T ss_pred CcEEEeceeeEEEEeeCCEEEEEEEEecCCCcEEEEECCEEEECCCcccc
Confidence 678888888888876666542 3 34456 24899999999999764
No 269
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=77.71 E-value=5.8 Score=36.10 Aligned_cols=44 Identities=11% Similarity=0.303 Sum_probs=31.6
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCc--EEEcCEEEEcCCCC
Q psy3952 4 EFCELGGEIRLNQQVESFKENPESVTISTKQGD--HLESSYALVCAGLQ 50 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~--~i~A~~VV~AaG~w 50 (252)
.+++.|++++.++ +..+ +.+.+.|.+.+|. ++.+|+||+|+|.-
T Consensus 103 ~~~~~~v~~~~g~-~~~~--~~~~~~v~~~~g~~~~~~~d~lviATGs~ 148 (461)
T PRK05249 103 QYERNRVDLIQGR-ARFV--DPHTVEVECPDGEVETLTADKIVIATGSR 148 (461)
T ss_pred HHHHCCCEEEEEE-EEEe--cCCEEEEEeCCCceEEEEcCEEEEcCCCC
Confidence 3567799998764 3333 3456778776663 69999999999964
No 270
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=77.36 E-value=8.1 Score=35.22 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=36.5
Q ss_pred hHHHhCCcEEEeCceeEEEEEc-CCeEE-EEeC---------CC-----------cEEEcCEEEEcCCCChHH
Q psy3952 3 EEFCELGGEIRLNQQVESFKEN-PESVT-ISTK---------QG-----------DHLESSYALVCAGLQADE 53 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V~t~---------~g-----------~~i~A~~VV~AaG~ws~~ 53 (252)
+.+++.|+++++++.++++..+ +++++ |+.. +| .++.+|.||.|.|.-.+.
T Consensus 317 ~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~ 389 (449)
T TIGR01316 317 AHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNP 389 (449)
T ss_pred HHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCc
Confidence 4578899999999999999764 34442 3211 12 269999999999986543
No 271
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=77.35 E-value=5.4 Score=37.07 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=35.7
Q ss_pred HHHh-CCcEEEeCceeEEEEEcCCeEE-EEeC-----CCcEEEcCEEEEcCCCChH
Q psy3952 4 EFCE-LGGEIRLNQQVESFKENPESVT-ISTK-----QGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 4 ~a~~-~G~~i~~~~~V~~i~~~~~~~~-V~t~-----~g~~i~A~~VV~AaG~ws~ 52 (252)
.+++ .|++++.++.|++++.+++++. |+.. ++.++.||.|++|.|.-.+
T Consensus 396 ~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn 451 (515)
T TIGR03140 396 KLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPN 451 (515)
T ss_pred HHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCC
Confidence 3444 5999999999999987655543 4422 2236999999999998653
No 272
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=77.09 E-value=7.1 Score=35.51 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=35.0
Q ss_pred HHHhCCcEEEeCceeEEEEEcCC-eEEEEe--CCCcEEEcCEEEEcCCCCh
Q psy3952 4 EFCELGGEIRLNQQVESFKENPE-SVTIST--KQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~-~~~V~t--~~g~~i~A~~VV~AaG~ws 51 (252)
..+++ ++++.+++|++++..++ .++++. .++.++.+|.|++|.|.-.
T Consensus 219 ~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p 268 (460)
T PRK06292 219 ILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRP 268 (460)
T ss_pred HHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCcc
Confidence 45667 99999999999987654 455533 2333699999999999754
No 273
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=76.77 E-value=5.2 Score=38.50 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=39.9
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
++++|++++.+.+|+.|.+... .|.|+.|.++.-|.+|+|+|-+..
T Consensus 69 y~~~~i~L~~~~~v~~idr~~k--~V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 69 YEENGITLYTGEKVIQIDRANK--VVTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred HHHcCcEEEcCCeeEEeccCcc--eEEccCCcEeecceeEEecCcccc
Confidence 5789999999999999987664 478888878999999999998764
No 274
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=76.62 E-value=5.2 Score=36.36 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=30.8
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
.+++.|++++.+ ++..+. ...+.|.+ +|..+.+|+||+|+|...
T Consensus 99 ~l~~~gV~~~~g-~~~~v~--~~~v~v~~-~g~~~~~d~lIiATGs~p 142 (446)
T TIGR01424 99 LLANAGVELLEG-RARLVG--PNTVEVLQ-DGTTYTAKKILIAVGGRP 142 (446)
T ss_pred HHHhCCcEEEEE-EEEEec--CCEEEEec-CCeEEEcCEEEEecCCcC
Confidence 356779999876 565553 33455654 344799999999999753
No 275
>KOG1335|consensus
Probab=76.34 E-value=7 Score=34.91 Aligned_cols=46 Identities=28% Similarity=0.348 Sum_probs=36.5
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCe-EEEE-----eCCCcEEEcCEEEEcCCC
Q psy3952 4 EFCELGGEIRLNQQVESFKENPES-VTIS-----TKQGDHLESSYALVCAGL 49 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~-~~V~-----t~~g~~i~A~~VV~AaG~ 49 (252)
-.+.+|..++.+++|+.+++++++ +.|+ +.+.++++||.+.+|.|-
T Consensus 261 ~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR 312 (506)
T KOG1335|consen 261 VLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGR 312 (506)
T ss_pred HHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccC
Confidence 456789999999999999998874 5443 333367999999999985
No 276
>PRK14694 putative mercuric reductase; Provisional
Probab=74.87 E-value=8.3 Score=35.29 Aligned_cols=40 Identities=10% Similarity=0.198 Sum_probs=30.2
Q ss_pred CcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCCh
Q psy3952 9 GGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 9 G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~ws 51 (252)
|++++.+ +|+.++ .+.++|++.+| .++++|+||+|+|...
T Consensus 111 ~v~~~~g-~v~~id--~~~~~V~~~~g~~~~~~~d~lViATGs~p 152 (468)
T PRK14694 111 AITVLNG-EARFVD--ERTLTVTLNDGGEQTVHFDRAFIGTGARP 152 (468)
T ss_pred CeEEEEE-EEEEec--CCEEEEEecCCCeEEEECCEEEEeCCCCC
Confidence 7888776 566664 45688887666 3699999999999853
No 277
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=74.73 E-value=7.6 Score=37.37 Aligned_cols=47 Identities=19% Similarity=0.247 Sum_probs=35.0
Q ss_pred HhCCcEEEeCceeEEEEEcCCe--EEEEeC-------CC--------cEEEcCEEEEcCCCChH
Q psy3952 6 CELGGEIRLNQQVESFKENPES--VTISTK-------QG--------DHLESSYALVCAGLQAD 52 (252)
Q Consensus 6 ~~~G~~i~~~~~V~~i~~~~~~--~~V~t~-------~g--------~~i~A~~VV~AaG~ws~ 52 (252)
+++|++++.++.|++++..++. +.|... ++ .++.+|.|++|+|.-.+
T Consensus 365 ~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 365 KSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPN 428 (659)
T ss_pred hcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccC
Confidence 4689999999999999876543 555421 11 26999999999998654
No 278
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=74.25 E-value=6.6 Score=36.04 Aligned_cols=46 Identities=7% Similarity=0.070 Sum_probs=30.7
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEe--CCCcEEEcCEEEEcCCCCh
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTIST--KQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t--~~g~~i~A~~VV~AaG~ws 51 (252)
.+..|++++.+. +..+.+.++.++|.+ +++.++++|+||+|+|...
T Consensus 110 ~~~~~v~~~~g~-~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p 157 (475)
T PRK06327 110 FKKNKITVLKGR-GSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEP 157 (475)
T ss_pred HHhCCCEEEEEE-EEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCC
Confidence 445688888654 454554444455543 3344799999999999854
No 279
>PLN02507 glutathione reductase
Probab=74.12 E-value=9.1 Score=35.46 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=31.5
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCc--EEEcCEEEEcCCCCh
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTISTKQGD--HLESSYALVCAGLQA 51 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~--~i~A~~VV~AaG~ws 51 (252)
.+..|++++.+ ++..+ +...+.|++.+|. ++.+|+||+|+|...
T Consensus 134 l~~~gV~~i~g-~a~~v--d~~~v~V~~~~g~~~~~~~d~LIIATGs~p 179 (499)
T PLN02507 134 LANAGVKLYEG-EGKIV--GPNEVEVTQLDGTKLRYTAKHILIATGSRA 179 (499)
T ss_pred HHhCCcEEEEE-EEEEe--cCCEEEEEeCCCcEEEEEcCEEEEecCCCC
Confidence 44578888775 44444 3456788877773 489999999999754
No 280
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=73.72 E-value=11 Score=34.50 Aligned_cols=50 Identities=22% Similarity=0.179 Sum_probs=35.2
Q ss_pred hHHHhCCcEEEeCceeEEEEEcC-CeEE-EE---e-----------------CCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENP-ESVT-IS---T-----------------KQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~-~~~~-V~---t-----------------~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|++++.++.+++|..++ ++++ |+ + ++..++.+|.||+|.|.-.+
T Consensus 328 ~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 399 (467)
T TIGR01318 328 ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPH 399 (467)
T ss_pred HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCC
Confidence 45778899999999999997543 3332 21 1 11236999999999997653
No 281
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=72.52 E-value=12 Score=37.80 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=42.1
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCC--eEEEE--eCCCcEEEcCEEEEcCCCCh-HHHHHHcCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPE--SVTIS--TKQGDHLESSYALVCAGLQA-DEMALKSGC 60 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~--~~~V~--t~~g~~i~A~~VV~AaG~ws-~~l~~~~g~ 60 (252)
+.++++|++++.++.|+.+..++. ++++. +.++.++.||.|+++.|.-. ..|+..+|.
T Consensus 359 ~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~ 421 (985)
T TIGR01372 359 AEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGG 421 (985)
T ss_pred HHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCC
Confidence 457788999999999999976543 23444 23445799999999999874 456666664
No 282
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=71.94 E-value=4.8 Score=36.92 Aligned_cols=51 Identities=6% Similarity=0.049 Sum_probs=37.6
Q ss_pred hHHHh-CCcEEEeCceeEEEEEcCC-eE-EEEe--CCC--cEEEcCEEEEcCCCChHH
Q psy3952 3 EEFCE-LGGEIRLNQQVESFKENPE-SV-TIST--KQG--DHLESSYALVCAGLQADE 53 (252)
Q Consensus 3 ~~a~~-~G~~i~~~~~V~~i~~~~~-~~-~V~t--~~g--~~i~A~~VV~AaG~ws~~ 53 (252)
+.+++ -+.++++++.+.++..+++ .+ .|.+ .++ ..+.|+.||+|+|..+..
T Consensus 141 ~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~l 198 (518)
T COG0029 141 KKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGL 198 (518)
T ss_pred HHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCccc
Confidence 34444 5999999999999988887 44 4544 221 379999999999987643
No 283
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=71.80 E-value=12 Score=32.81 Aligned_cols=57 Identities=14% Similarity=0.293 Sum_probs=43.1
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEE---EEeCCCcEEEcCEEEEcCCCChH-HHHHHc
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVT---ISTKQGDHLESSYALVCAGLQAD-EMALKS 58 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~---V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~ 58 (252)
.+..+++|++++.++++.+|+...+... +.+..+..+.+|.++++.|...+ .+++..
T Consensus 185 ~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~ 245 (415)
T COG0446 185 AELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDA 245 (415)
T ss_pred HHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhC
Confidence 3457788999999999999997765532 45556658999999999999884 444433
No 284
>PRK07846 mycothione reductase; Reviewed
Probab=71.58 E-value=7.5 Score=35.47 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=28.0
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
.+++|++++.+.... + +.. +|++.+|.++.+|++|+|+|...
T Consensus 99 ~~~~~v~~~~g~a~~-~--~~~--~V~v~~g~~~~~d~lViATGs~p 140 (451)
T PRK07846 99 RDTPNIDVYRGHARF-I--GPK--TLRTGDGEEITADQVVIAAGSRP 140 (451)
T ss_pred hhhCCcEEEEEEEEE-e--cCC--EEEECCCCEEEeCEEEEcCCCCC
Confidence 456788888765332 2 233 34555565799999999999643
No 285
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=71.20 E-value=11 Score=36.28 Aligned_cols=50 Identities=20% Similarity=0.227 Sum_probs=35.2
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEE-----e-------------CCC--cEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTIS-----T-------------KQG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~-----t-------------~~g--~~i~A~~VV~AaG~ws~ 52 (252)
+.+.+.|++|+.++.+.+|..++++..++ . .+| .++.+|.||.|.|.-.+
T Consensus 369 ~~a~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~ 438 (652)
T PRK12814 369 EEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVD 438 (652)
T ss_pred HHHHHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCC
Confidence 34567899999999999987665543221 1 012 25999999999997543
No 286
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=70.47 E-value=9.1 Score=34.86 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=31.1
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCeEEEEeCC-CcEEEcCEEEEcCCCCh
Q psy3952 4 EFCELGGEIRLNQQVESFKENPESVTISTKQ-GDHLESSYALVCAGLQA 51 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~-g~~i~A~~VV~AaG~ws 51 (252)
.+++.|++++.++ ++.+ +...+.|.+.+ +.++.+|+||+|+|...
T Consensus 101 ~~~~~gv~~~~g~-~~~~--~~~~~~v~~~~~~~~~~~d~lViAtGs~p 146 (462)
T PRK06416 101 LLKKNKVDIIRGE-AKLV--DPNTVRVMTEDGEQTYTAKNIILATGSRP 146 (462)
T ss_pred HHHhCCCEEEEEE-EEEc--cCCEEEEecCCCcEEEEeCEEEEeCCCCC
Confidence 3567899998874 4433 34456676432 34799999999999865
No 287
>PRK13984 putative oxidoreductase; Provisional
Probab=70.09 E-value=11 Score=35.83 Aligned_cols=48 Identities=15% Similarity=0.007 Sum_probs=34.0
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCeEE-EEe-------------------CCCcEEEcCEEEEcCCCCh
Q psy3952 4 EFCELGGEIRLNQQVESFKENPESVT-IST-------------------KQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~~~-V~t-------------------~~g~~i~A~~VV~AaG~ws 51 (252)
.+.+.|++++.++.++.+..++++++ |+. +++.++.||.||+|.|.-.
T Consensus 471 ~~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p 538 (604)
T PRK13984 471 EGLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAP 538 (604)
T ss_pred HHHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCC
Confidence 45578999999988888865555432 221 1223699999999999864
No 288
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=66.86 E-value=2.7 Score=38.07 Aligned_cols=79 Identities=23% Similarity=0.298 Sum_probs=56.5
Q ss_pred HHHHHHHhccCCCCCCceecCCcceeEeecCCCCcccceEEEecCCeEEEeccCCccccchHHHHHHHHHHHHhhcccc
Q psy3952 169 RVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILNELRREFKLD 247 (252)
Q Consensus 169 ~~~~~~~~~P~l~~~~i~~~w~G~rp~~~~~d~~p~~~~~i~~~~~~~~~~G~~~~G~t~a~~~g~~va~~i~~~~~~~ 247 (252)
..+....++|.....+..-..+|+|++..+.|.....+++.-..+..+.+.-..++|++.+..++..+++++.+.....
T Consensus 330 ~~~~~~~~ip~~~~~~~~~~~aGiRsq~lt~~~a~~~~~~~~~t~~~i~~~~~~sp~a~~~~~i~~~~~~~~~~~~~~~ 408 (429)
T COG0579 330 RLPALDFIIPEAKDEDWFINVAGIRSQGLTADPAIAGGVLELLTERSIAVLLGPSPGASSAVPIMLRLLEKVFEERARS 408 (429)
T ss_pred cccccceecccccCCCCceeeeeEEccccccChhHhhhHhhhcccceeeeecCCCCCccccchhhHHHHHhChhhhhhh
Confidence 4567888999888888888899999998876643332322111244556666688999999999999999887665443
No 289
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.83 E-value=8.1 Score=35.31 Aligned_cols=41 Identities=12% Similarity=0.232 Sum_probs=31.5
Q ss_pred EEEeCceeEEEEEc--CCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 11 EIRLNQQVESFKEN--PESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 11 ~i~~~~~V~~i~~~--~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
..+.+++++++.+. ++++.|.+.+|....||.+|+|+|.-.
T Consensus 122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~ 164 (474)
T COG4529 122 VRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSA 164 (474)
T ss_pred eeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCC
Confidence 34455677887776 566889999997789999999997654
No 290
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=66.28 E-value=17 Score=32.86 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=29.7
Q ss_pred CCcEEEeCceeEEEEEcCCeEEEEeCCCc-EEEcCEEEEcCCCCh
Q psy3952 8 LGGEIRLNQQVESFKENPESVTISTKQGD-HLESSYALVCAGLQA 51 (252)
Q Consensus 8 ~G~~i~~~~~V~~i~~~~~~~~V~t~~g~-~i~A~~VV~AaG~ws 51 (252)
.|++++.+ ++..+ +.+.+.|.+.+|. ++.+|+||+|+|...
T Consensus 90 ~gv~~~~g-~~~~i--~~~~~~v~~~~g~~~~~~d~lviATGs~p 131 (441)
T PRK08010 90 PNIDVIDG-QAEFI--NNHSLRVHRPEGNLEIHGEKIFINTGAQT 131 (441)
T ss_pred CCcEEEEE-EEEEe--cCCEEEEEeCCCeEEEEeCEEEEcCCCcC
Confidence 48888765 45444 3456778877763 599999999999864
No 291
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=65.64 E-value=15 Score=37.06 Aligned_cols=58 Identities=28% Similarity=0.280 Sum_probs=38.3
Q ss_pred hHHHhCCcEEEeCceeEEEEEcC---------------CeE-EEEeCCCcEEEcCEEEEcCCCChH-HHHHHcCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENP---------------ESV-TISTKQGDHLESSYALVCAGLQAD-EMALKSGC 60 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~---------------~~~-~V~t~~g~~i~A~~VV~AaG~ws~-~l~~~~g~ 60 (252)
+.|.+.|++++..+.++++..++ ++. .+.++++.++.||.||.|.|.-.+ .+++..|+
T Consensus 715 e~AleeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL 789 (1019)
T PRK09853 715 EEALEDGVEFKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGI 789 (1019)
T ss_pred HHHHHcCCEEEeCCceEEEEcCCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCc
Confidence 34567899999998888885322 111 133445557999999999998743 34444454
No 292
>PRK12831 putative oxidoreductase; Provisional
Probab=65.44 E-value=19 Score=33.04 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=35.6
Q ss_pred hHHHhCCcEEEeCceeEEEEEc-CCeEE-EEe-----C-------------CC--cEEEcCEEEEcCCCChHH
Q psy3952 3 EEFCELGGEIRLNQQVESFKEN-PESVT-IST-----K-------------QG--DHLESSYALVCAGLQADE 53 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V~t-----~-------------~g--~~i~A~~VV~AaG~ws~~ 53 (252)
+.|++.|+++++++.++++..+ ++.++ |+. . .| .++.||.||.|.|.-.+.
T Consensus 326 ~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~ 398 (464)
T PRK12831 326 HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNP 398 (464)
T ss_pred HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCCh
Confidence 3577889999999999998754 33332 221 0 12 259999999999986543
No 293
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=65.44 E-value=11 Score=33.32 Aligned_cols=52 Identities=12% Similarity=0.226 Sum_probs=39.8
Q ss_pred HhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcC
Q psy3952 6 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSG 59 (252)
Q Consensus 6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g 59 (252)
+.-+.+|.++++|..|.+-.+++.|.-.+|.+-..|.||+|+-+. +-+.++.
T Consensus 228 a~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~d--qAl~mL~ 279 (447)
T COG2907 228 ADIRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPD--QALALLD 279 (447)
T ss_pred ccccceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChH--HHHHhcC
Confidence 344566889999999999988888777778677899999998654 4444454
No 294
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=64.94 E-value=23 Score=34.07 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=35.5
Q ss_pred hHHHhCCcEEEeCceeEEEEEc-CCeEE-EEe---------CCC-----------cEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKEN-PESVT-IST---------KQG-----------DHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V~t---------~~g-----------~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|+++++++.+++|..+ ++.++ |++ .+| .++.+|.||+|.|.-.+
T Consensus 514 ~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~ 585 (654)
T PRK12769 514 KNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPH 585 (654)
T ss_pred HHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCC
Confidence 4578899999999999998753 34432 321 112 25999999999997654
No 295
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=64.77 E-value=3.7 Score=38.18 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=33.7
Q ss_pred CCcEEEeCceeEEEEEcCC-e-EEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 8 LGGEIRLNQQVESFKENPE-S-VTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 8 ~G~~i~~~~~V~~i~~~~~-~-~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
.+..++++ .|.++..+++ . +.|.|..|..+.|+.||+++|...
T Consensus 114 ~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL 158 (621)
T COG0445 114 PNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFL 158 (621)
T ss_pred CCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccc
Confidence 36677664 5788877655 3 459999998899999999999875
No 296
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=64.63 E-value=18 Score=34.07 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=35.1
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCe-E-----EEEe----C-------CC--cEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPES-V-----TIST----K-------QG--DHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~-~-----~V~t----~-------~g--~~i~A~~VV~AaG~ws~ 52 (252)
+.+.+.|+++++++.+.+|..++++ + +++. . .| .++.+|.||.|.|.-.+
T Consensus 313 ~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~ 381 (564)
T PRK12771 313 EEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDID 381 (564)
T ss_pred HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCc
Confidence 4567789999999999999765433 2 1221 1 12 36999999999997653
No 297
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=63.54 E-value=16 Score=33.23 Aligned_cols=44 Identities=11% Similarity=0.282 Sum_probs=30.0
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEeCCC-cEEEcCEEEEcCCCCh
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQA 51 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g-~~i~A~~VV~AaG~ws 51 (252)
.++.|++++.+.. ..+ +...+.|.+.+| .++++|+||+|+|...
T Consensus 99 ~~~~~v~~~~g~~-~~~--~~~~~~v~~~~g~~~~~~d~lVlAtG~~p 143 (461)
T TIGR01350 99 LKKNKVTVIKGEA-KFL--DPGTVLVTGENGEETLTAKNIIIATGSRP 143 (461)
T ss_pred HHhCCCEEEEEEE-EEc--cCCEEEEecCCCcEEEEeCEEEEcCCCCC
Confidence 3456888877543 222 345577777654 3799999999999754
No 298
>PRK06116 glutathione reductase; Validated
Probab=62.91 E-value=17 Score=33.03 Aligned_cols=41 Identities=12% Similarity=0.200 Sum_probs=28.3
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
+++.|++++.++ ++.+. .. +|++ +|..+++|+||+|+|...
T Consensus 103 l~~~gv~~~~g~-~~~v~--~~--~v~~-~g~~~~~d~lViATGs~p 143 (450)
T PRK06116 103 LENNGVDLIEGF-ARFVD--AH--TVEV-NGERYTADHILIATGGRP 143 (450)
T ss_pred HHhCCCEEEEEE-EEEcc--CC--EEEE-CCEEEEeCEEEEecCCCC
Confidence 456799998764 54442 23 3444 454799999999999753
No 299
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=62.28 E-value=15 Score=33.53 Aligned_cols=42 Identities=7% Similarity=0.136 Sum_probs=28.3
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
.++++|++++.++.+. . +++. |..+ |..+.+|+||+|+|...
T Consensus 100 ~l~~~gv~~~~g~~~~--~-~~~~--v~v~-~~~~~~d~vIiAtGs~p 141 (450)
T TIGR01421 100 NLEKNKVDVIFGHARF--T-KDGT--VEVN-GRDYTAPHILIATGGKP 141 (450)
T ss_pred HHHhCCCEEEEEEEEE--c-cCCE--EEEC-CEEEEeCEEEEecCCCC
Confidence 3556799999887542 1 2333 3333 33799999999999753
No 300
>PTZ00367 squalene epoxidase; Provisional
Probab=61.77 E-value=18 Score=34.16 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=35.6
Q ss_pred hCCcEEEeCceeEEEEEcCC-------eEEEEeCC-----------------------CcEEEcCEEEEcCCCChHHHHH
Q psy3952 7 ELGGEIRLNQQVESFKENPE-------SVTISTKQ-----------------------GDHLESSYALVCAGLQADEMAL 56 (252)
Q Consensus 7 ~~G~~i~~~~~V~~i~~~~~-------~~~V~t~~-----------------------g~~i~A~~VV~AaG~ws~~l~~ 56 (252)
..|+++++ .+|+++..+++ ++++++++ |.+++||.||.|=|.+|. +.+
T Consensus 146 ~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~-vR~ 223 (567)
T PTZ00367 146 QDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSK-FKS 223 (567)
T ss_pred CCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcchH-HHH
Confidence 45899875 47888765443 24444333 557999999999999884 556
Q ss_pred HcCC
Q psy3952 57 KSGC 60 (252)
Q Consensus 57 ~~g~ 60 (252)
.++.
T Consensus 224 ~l~~ 227 (567)
T PTZ00367 224 RYQH 227 (567)
T ss_pred HccC
Confidence 6653
No 301
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=60.96 E-value=26 Score=33.63 Aligned_cols=49 Identities=24% Similarity=0.276 Sum_probs=34.5
Q ss_pred hHHHhCCcEEEeCceeEEEEEcC-CeEE-EE---eC------C---------C--cEEEcCEEEEcCCCCh
Q psy3952 3 EEFCELGGEIRLNQQVESFKENP-ESVT-IS---TK------Q---------G--DHLESSYALVCAGLQA 51 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~-~~~~-V~---t~------~---------g--~~i~A~~VV~AaG~ws 51 (252)
+.+++.|+++++++.+++|..++ ++++ |+ +. + | ..+.||.||+|.|.-.
T Consensus 497 ~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p 567 (639)
T PRK12809 497 VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQA 567 (639)
T ss_pred HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCC
Confidence 34678899999999999997543 4342 21 11 1 2 3689999999999654
No 302
>KOG1336|consensus
Probab=60.94 E-value=19 Score=32.99 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=36.5
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCC
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL 49 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ 49 (252)
-++.|.+++++++|++++..... |.+++|+++.-+++++|+|.
T Consensus 137 Yke~gIe~~~~t~v~~~D~~~K~--l~~~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 137 YKEKGIELILGTSVVKADLASKT--LVLGNGETLKYSKLIIATGS 179 (478)
T ss_pred HhhcCceEEEcceeEEeeccccE--EEeCCCceeecceEEEeecC
Confidence 46789999999999999876653 56667778999999999999
No 303
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=60.90 E-value=22 Score=32.52 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=28.6
Q ss_pred HhCCcEEEeCceeEEEEEcCCeEEEEeCCCc--EEEcCEEEEcCCCCh
Q psy3952 6 CELGGEIRLNQQVESFKENPESVTISTKQGD--HLESSYALVCAGLQA 51 (252)
Q Consensus 6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~--~i~A~~VV~AaG~ws 51 (252)
++.|++++.+.. .+. ..+++.|.+.+|. ++++|+||+|+|...
T Consensus 104 ~~~~v~~~~g~a--~~~-~~~~v~v~~~~g~~~~~~~d~lVIATGs~p 148 (466)
T PRK06115 104 RKNKVDWIKGWG--RLD-GVGKVVVKAEDGSETQLEAKDIVIATGSEP 148 (466)
T ss_pred HhCCCEEEEEEE--EEc-cCCEEEEEcCCCceEEEEeCEEEEeCCCCC
Confidence 345777776542 332 2345677766652 599999999999864
No 304
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=59.08 E-value=23 Score=32.96 Aligned_cols=44 Identities=27% Similarity=0.297 Sum_probs=33.6
Q ss_pred CCcEEEeCceeEEEEEcCCeEE-EEe---CCC--cEEEcCEEEEcCCCCh
Q psy3952 8 LGGEIRLNQQVESFKENPESVT-IST---KQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 8 ~G~~i~~~~~V~~i~~~~~~~~-V~t---~~g--~~i~A~~VV~AaG~ws 51 (252)
.|++++.++.|++++.+++++. |+. .+| .++.+|.|++|.|.-.
T Consensus 400 ~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred CCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCcc
Confidence 5999999999999987755543 332 223 3599999999999865
No 305
>KOG0029|consensus
Probab=58.50 E-value=18 Score=33.58 Aligned_cols=42 Identities=29% Similarity=0.453 Sum_probs=32.4
Q ss_pred CcEEEeCceeEEEEEcCCe-EEEEeCCCcEEEcCEEEEcCCCC
Q psy3952 9 GGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQ 50 (252)
Q Consensus 9 G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~A~~VV~AaG~w 50 (252)
|..|+.++.|..|+..++. +.|++.+++.+.||+||+++=..
T Consensus 228 ~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~ 270 (501)
T KOG0029|consen 228 GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLG 270 (501)
T ss_pred CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHH
Confidence 8999999999999987665 34444444459999999997554
No 306
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=58.45 E-value=26 Score=31.94 Aligned_cols=44 Identities=7% Similarity=0.065 Sum_probs=29.4
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEeCCC-cEEEcCEEEEcCCCCh
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQA 51 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g-~~i~A~~VV~AaG~ws 51 (252)
+++.|+++..+. +..+ +...+.|.+++| .++++|+||+|+|...
T Consensus 100 ~~~~~v~~~~g~-a~~~--~~~~v~v~~~~~~~~~~~d~lviATGs~p 144 (458)
T PRK06912 100 MKKNKIKVIQGK-ASFE--TDHRVRVEYGDKEEVVDAEQFIIAAGSEP 144 (458)
T ss_pred HhhCCcEEEEEE-EEEc--cCCEEEEeeCCCcEEEECCEEEEeCCCCC
Confidence 345678877654 3222 345567776555 3699999999999864
No 307
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=58.40 E-value=6.8 Score=38.38 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=31.4
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
|.+.+++.|++|+++++|+++.. - .+.||.||.|.|.+|.
T Consensus 103 L~e~a~~~GV~i~~g~~v~~i~~-----------~-~~~~D~VVgADG~~S~ 142 (765)
T PRK08255 103 LQARCEELGVKLVFETEVPDDQA-----------L-AADADLVIASDGLNSR 142 (765)
T ss_pred HHHHHHHcCCEEEeCCccCchhh-----------h-hcCCCEEEEcCCCCHH
Confidence 34667888999999998887631 1 2578999999999985
No 308
>PRK09897 hypothetical protein; Provisional
Probab=58.39 E-value=22 Score=33.31 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=26.1
Q ss_pred EEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 20 SFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 20 ~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+++..++++.+.+.++ .+..+.||||+|--.-
T Consensus 417 ~~~~~~~~~~~~~~~~-~~~~~~~i~a~G~~~~ 448 (534)
T PRK09897 417 EMEINESRTVIKTEDN-SYSFDVFIDARGQRPL 448 (534)
T ss_pred eeEecCCeEEEEeCCC-ceEeCEEEECCCCCCC
Confidence 3477778888888876 8999999999998653
No 309
>PTZ00058 glutathione reductase; Provisional
Probab=58.34 E-value=18 Score=34.11 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=29.9
Q ss_pred HHHhCCcEEEeCcee-EE---EE-------------EcCCeEEE------EeCCCcEEEcCEEEEcCCCCh
Q psy3952 4 EFCELGGEIRLNQQV-ES---FK-------------ENPESVTI------STKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V-~~---i~-------------~~~~~~~V------~t~~g~~i~A~~VV~AaG~ws 51 (252)
..+++|++++.++.. .+ +. .++++++| .+++|.++++|+||+|+|...
T Consensus 144 ~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad~lVIATGS~P 214 (561)
T PTZ00058 144 NLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNKP 214 (561)
T ss_pred HHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEECCEEEEecCCCC
Confidence 356679999887741 11 11 11233445 234565799999999999743
No 310
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=57.62 E-value=7 Score=34.24 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=31.6
Q ss_pred hHHHhCCcEEEeCceeEEEEE----cCCeEEEE---eCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKE----NPESVTIS---TKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~----~~~~~~V~---t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+.+.|++++.++.|..+.. +++.+... .... .+.+|+||+|+|.|..
T Consensus 76 ~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~lviAtGs~~~ 131 (352)
T PRK12770 76 KELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEEL-VKKYDAVLIATGTWKS 131 (352)
T ss_pred HHHHhCCeEEecCcEEeeccccccccccccccccCCHHHH-HhhCCEEEEEeCCCCC
Confidence 345667999999988876532 22223222 2222 4799999999998743
No 311
>KOG2415|consensus
Probab=57.57 E-value=15 Score=33.32 Aligned_cols=60 Identities=23% Similarity=0.306 Sum_probs=44.4
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEcCC-eEE-EEeCC---------------CcEEEcCEEEEcCCCC---hHHHHHHcCC
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKENPE-SVT-ISTKQ---------------GDHLESSYALVCAGLQ---ADEMALKSGC 60 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~~~-~~~-V~t~~---------------g~~i~A~~VV~AaG~w---s~~l~~~~g~ 60 (252)
|.+.|++.|++|.-++.+.++..+.+ .++ |.|++ |.+++|+.-|.|-|-. +.++.++.++
T Consensus 189 Lg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~L 268 (621)
T KOG2415|consen 189 LGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDL 268 (621)
T ss_pred HHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCc
Confidence 45789999999999999888877544 454 65543 4679999999987665 5666666654
No 312
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.60 E-value=17 Score=32.63 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=32.6
Q ss_pred HHhCCcEEEeCceeEEEEEcCC--eEE--EEeCCCcEEEcCEEEEcCCC
Q psy3952 5 FCELGGEIRLNQQVESFKENPE--SVT--ISTKQGDHLESSYALVCAGL 49 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~--~~~--V~t~~g~~i~A~~VV~AaG~ 49 (252)
|.+. -.++++++|++|...++ ... |.|.++..++|+.+|+..|.
T Consensus 108 a~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~ 155 (436)
T COG3486 108 ASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGT 155 (436)
T ss_pred HhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCC
Confidence 4444 67788999998855432 233 67777768999999999985
No 313
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=56.38 E-value=29 Score=31.71 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=30.9
Q ss_pred hhHHHhCCcEEEeCceeEEEEEc-CCeE-EEEeCCCcEEEcCEEEEc
Q psy3952 2 GEEFCELGGEIRLNQQVESFKEN-PESV-TISTKQGDHLESSYALVC 46 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~~-~V~t~~g~~i~A~~VV~A 46 (252)
.+.+.=.|+++..++.|.+|..+ ++.+ .|.+ +|+++.|++||..
T Consensus 239 cRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~vI~d 284 (438)
T PF00996_consen 239 CRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKKVIGD 284 (438)
T ss_dssp HHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESEEEEE
T ss_pred HHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCEEEEC
Confidence 45667789999999999999874 4444 3766 5558999999943
No 314
>PRK06370 mercuric reductase; Validated
Probab=56.28 E-value=20 Score=32.63 Aligned_cols=41 Identities=22% Similarity=0.359 Sum_probs=27.2
Q ss_pred HHhC-CcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 5 FCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 5 a~~~-G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
.++. |++++.++.+. .+...+ +.+ +.++.+|+||+|+|...
T Consensus 104 ~~~~~gv~v~~g~~~~---~~~~~v--~v~-~~~~~~d~lViATGs~p 145 (463)
T PRK06370 104 LRGLEGVDVFRGHARF---ESPNTV--RVG-GETLRAKRIFINTGARA 145 (463)
T ss_pred HhcCCCcEEEEEEEEE---ccCCEE--EEC-cEEEEeCEEEEcCCCCC
Confidence 3455 89998877552 223333 333 33799999999999854
No 315
>PRK14727 putative mercuric reductase; Provisional
Probab=56.17 E-value=28 Score=31.98 Aligned_cols=40 Identities=13% Similarity=0.256 Sum_probs=26.8
Q ss_pred CcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCCh
Q psy3952 9 GGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 9 G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~ws 51 (252)
|++++.+.. .+ .+++.+.|.+.+| .++.+|+||+|+|...
T Consensus 121 ~v~~i~G~a--~f-~~~~~v~v~~~~g~~~~~~~d~lViATGs~p 162 (479)
T PRK14727 121 ALTLLKGYA--RF-KDGNTLVVRLHDGGERVLAADRCLIATGSTP 162 (479)
T ss_pred CeEEEEEEE--EE-ecCCEEEEEeCCCceEEEEeCEEEEecCCCC
Confidence 677666541 12 2345677877665 2599999999999743
No 316
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=55.84 E-value=19 Score=32.47 Aligned_cols=47 Identities=13% Similarity=0.231 Sum_probs=34.5
Q ss_pred HHhCC-cEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHH
Q psy3952 5 FCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEM 54 (252)
Q Consensus 5 a~~~G-~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l 54 (252)
++..+ +++.+ .+|++|+.++.++ .++++..+.-|++|+|.|.-....
T Consensus 67 ~~~~~~v~~~~-~~V~~ID~~~k~V--~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 67 LRKSGNVQFVQ-GEVTDIDRDAKKV--TLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred hcccCceEEEE-EEEEEEcccCCEE--EeCCCccccccEEEEecCCcCCcC
Confidence 44344 77776 5899999888764 455533899999999999976543
No 317
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=55.62 E-value=36 Score=33.33 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=35.8
Q ss_pred hHHHhCCcEEEeCceeEEEEEcC-CeEE-EEeC---------C---------C--cEEEcCEEEEcCCCChHH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENP-ESVT-ISTK---------Q---------G--DHLESSYALVCAGLQADE 53 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~-~~~~-V~t~---------~---------g--~~i~A~~VV~AaG~ws~~ 53 (252)
+.+++.|+++++++.+.++..++ +.++ |+.. + | .++.||.||.|.|.-.+.
T Consensus 616 ~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~ 688 (752)
T PRK12778 616 KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNP 688 (752)
T ss_pred HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCc
Confidence 35778899999999999987643 3332 3210 1 2 259999999999986553
No 318
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=55.45 E-value=31 Score=34.96 Aligned_cols=56 Identities=25% Similarity=0.278 Sum_probs=36.6
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEE-----------------EeCCCcEEEcCEEEEcCCCCh-HHHHHHcCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTI-----------------STKQGDHLESSYALVCAGLQA-DEMALKSGC 60 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V-----------------~t~~g~~i~A~~VV~AaG~ws-~~l~~~~g~ 60 (252)
+.+.+.|+++++++.+..++ ++++.+ .+++..++.||.||.|.|.-. ..+++.+|+
T Consensus 713 ~~aleeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL 786 (1012)
T TIGR03315 713 EEALEDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGI 786 (1012)
T ss_pred HHHHHcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCc
Confidence 34567899999988888776 232221 122223689999999999764 334555554
No 319
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.14 E-value=12 Score=33.18 Aligned_cols=51 Identities=8% Similarity=0.135 Sum_probs=40.2
Q ss_pred hHHHhCCcEEEeCceeEEEEEc---CCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952 3 EEFCELGGEIRLNQQVESFKEN---PESVTISTKQGDHLESSYALVCAGLQADE 53 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~---~~~~~V~t~~g~~i~A~~VV~AaG~ws~~ 53 (252)
++.++.-+.+.+-.++++++.. ++-..|++.+|-.++++.||+++|+--+.
T Consensus 274 ~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn 327 (520)
T COG3634 274 AHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRN 327 (520)
T ss_pred HHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhc
Confidence 3456778888888888888874 34467999988789999999999986544
No 320
>KOG0685|consensus
Probab=55.08 E-value=14 Score=33.79 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=32.5
Q ss_pred cEEEeCceeEEEEEcC-CeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952 10 GEIRLNQQVESFKENP-ESVTISTKQGDHLESSYALVCAGLQ 50 (252)
Q Consensus 10 ~~i~~~~~V~~i~~~~-~~~~V~t~~g~~i~A~~VV~AaG~w 50 (252)
.+++.+++|.+|...+ +.++|+-.+|..++||+||+..-..
T Consensus 244 ~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLG 285 (498)
T KOG0685|consen 244 KRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLG 285 (498)
T ss_pred hhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeech
Confidence 3456679999998765 5588888889789999999987444
No 321
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=53.22 E-value=27 Score=30.67 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=37.4
Q ss_pred HhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHH
Q psy3952 6 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE 53 (252)
Q Consensus 6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~ 53 (252)
.+.++.++.+++|+++..+... |.+.+| .+..|++|+|+|++...
T Consensus 64 ~~~~i~~~~~~~v~~id~~~~~--v~~~~g-~~~yd~LvlatGa~~~~ 108 (415)
T COG0446 64 RATGIDVRTGTEVTSIDPENKV--VLLDDG-EIEYDYLVLATGARPRP 108 (415)
T ss_pred HhhCCEEeeCCEEEEecCCCCE--EEECCC-cccccEEEEcCCCcccC
Confidence 4668999999999999876653 667777 89999999999998754
No 322
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=53.02 E-value=11 Score=36.33 Aligned_cols=60 Identities=17% Similarity=0.357 Sum_probs=46.0
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC-hHHHHHHcCCC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ-ADEMALKSGCS 61 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w-s~~l~~~~g~~ 61 (252)
.+...+.|.+++++..++.|-.++.-..|.-++|..+.|+.||.|+|.- ...++...|+.
T Consensus 194 ~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGla 254 (793)
T COG1251 194 RRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLA 254 (793)
T ss_pred HHHHHhhcceeecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHHhcCcC
Confidence 3456688999999887777766333345888899889999999999987 45677777764
No 323
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=52.65 E-value=37 Score=30.68 Aligned_cols=44 Identities=7% Similarity=0.102 Sum_probs=28.8
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEeCC-CcEEEcCEEEEcCCCCh
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTISTKQ-GDHLESSYALVCAGLQA 51 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~-g~~i~A~~VV~AaG~ws 51 (252)
..+.|++++.++. .. .++..+.|+..+ ..++.+|+||+|+|...
T Consensus 86 ~~~~gV~~~~g~~-~~--~~~~~v~v~~~~~~~~~~~d~vViATGs~~ 130 (438)
T PRK07251 86 LAGSGVDLYDAEA-HF--VSNKVIEVQAGDEKIELTAETIVINTGAVS 130 (438)
T ss_pred HHhCCCEEEEEEE-EE--ccCCEEEEeeCCCcEEEEcCEEEEeCCCCC
Confidence 4566888877653 21 234456665533 23699999999999864
No 324
>KOG0405|consensus
Probab=52.19 E-value=27 Score=31.00 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=38.5
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCe-EEEEeCCCcEEE-cCEEEEcCCCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLE-SSYALVCAGLQ 50 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~-~~V~t~~g~~i~-A~~VV~AaG~w 50 (252)
++.+..|++++.++.++.+.+.+.+ ..+.|.+| ++. .|.++-|.|--
T Consensus 238 ~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~-~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 238 EHLEGRGINVHKNSSVTKVIKTDDGLELVITSHG-TIEDVDTLLWAIGRK 286 (478)
T ss_pred HHhhhcceeecccccceeeeecCCCceEEEEecc-ccccccEEEEEecCC
Confidence 5667889999999999999887655 66777778 555 99999999875
No 325
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=49.54 E-value=38 Score=31.27 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=28.8
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCC
Q psy3952 4 EFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQ 50 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~w 50 (252)
..+.+|++++.+... +. +.+.+.|...+| .++.+|+||+|+|.-
T Consensus 109 ~~~~~~v~~i~G~a~--f~-~~~~v~v~~~~g~~~~~~~d~lVIATGs~ 154 (484)
T TIGR01438 109 ALREKKVNYENAYAE--FV-DKHRIKATNKKGKEKIYSAERFLIATGER 154 (484)
T ss_pred HHhhCCcEEEEEEEE--Ec-CCCEEEEeccCCCceEEEeCEEEEecCCC
Confidence 356678888876532 21 334466654333 369999999999974
No 326
>PRK13748 putative mercuric reductase; Provisional
Probab=49.35 E-value=51 Score=30.85 Aligned_cols=40 Identities=8% Similarity=0.145 Sum_probs=27.8
Q ss_pred CcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCCh
Q psy3952 9 GGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 9 G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~ws 51 (252)
|++++.+ +++.+ +...+.|.+.+| .++++|+||+|+|...
T Consensus 203 ~v~~~~g-~~~~~--~~~~~~v~~~~g~~~~~~~d~lviAtGs~p 244 (561)
T PRK13748 203 AITVLHG-EARFK--DDQTLIVRLNDGGERVVAFDRCLIATGASP 244 (561)
T ss_pred CeEEEEE-EEEEe--cCCEEEEEeCCCceEEEEcCEEEEcCCCCC
Confidence 7787765 34433 345577776655 2599999999999853
No 327
>KOG1346|consensus
Probab=49.33 E-value=26 Score=31.77 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=38.9
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHH
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEM 54 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l 54 (252)
+...|+.++++-+|.+|..++.. |..++|.+|.-|...+|+|.--..+
T Consensus 267 ~~nGGvAvl~G~kvvkid~~d~~--V~LnDG~~I~YdkcLIATG~~Pk~l 314 (659)
T KOG1346|consen 267 AVNGGVAVLRGRKVVKIDEEDKK--VILNDGTTIGYDKCLIATGVRPKKL 314 (659)
T ss_pred cccCceEEEeccceEEeecccCe--EEecCCcEeehhheeeecCcCcccc
Confidence 34568899999999999988765 5668888899999999999865443
No 328
>PLN02546 glutathione reductase
Probab=48.81 E-value=30 Score=32.61 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=27.7
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
.+++.|++++.+ +++.+. ... |.++ |..+.+|+||+|+|.-.
T Consensus 187 ~l~~~gV~~i~G-~a~~vd--~~~--V~v~-G~~~~~D~LVIATGs~p 228 (558)
T PLN02546 187 ILKNAGVTLIEG-RGKIVD--PHT--VDVD-GKLYTARNILIAVGGRP 228 (558)
T ss_pred HHHhCCcEEEEe-EEEEcc--CCE--EEEC-CEEEECCEEEEeCCCCC
Confidence 356778998875 344332 222 4443 54799999999999754
No 329
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=46.66 E-value=34 Score=31.16 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=26.8
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEEEEeCCC-cEEEcCEEEEcCCCCh
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQA 51 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g-~~i~A~~VV~AaG~ws 51 (252)
+++.|++++.++.+ .+ +.. +|.+.+| ..+.+|+||+|+|...
T Consensus 98 l~~~gv~~~~g~~~-~~--~~~--~v~v~~g~~~~~~~~lIiATGs~p 140 (463)
T TIGR02053 98 LSSYGVDYLRGRAR-FK--DPK--TVKVDLGREVRGAKRFLIATGARP 140 (463)
T ss_pred HHhCCcEEEEEEEE-Ec--cCC--EEEEcCCeEEEEeCEEEEcCCCCC
Confidence 56678988876532 21 223 3444443 2589999999999754
No 330
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=46.04 E-value=52 Score=33.25 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=35.9
Q ss_pred hHHHhCCcEEEeCceeEEEEEcC-C-eEE-EEe---------C--------CC--cEEEcCEEEEcCCCChHHH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENP-E-SVT-IST---------K--------QG--DHLESSYALVCAGLQADEM 54 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~-~-~~~-V~t---------~--------~g--~~i~A~~VV~AaG~ws~~l 54 (252)
+.|.+.|+++++++.+++|..++ + .++ |+. . .| .++.||.||+|.|--.+..
T Consensus 492 ~~a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~ 565 (944)
T PRK12779 492 HHALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPI 565 (944)
T ss_pred HHHHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChh
Confidence 34678899999999999987653 2 232 211 1 12 3599999999999876554
No 331
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=41.86 E-value=49 Score=30.36 Aligned_cols=46 Identities=11% Similarity=0.301 Sum_probs=30.7
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 4 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
..+++|++++.++.. |. +++.+.|......+++|+++|+|+|....
T Consensus 103 l~~~~~V~vi~G~a~--f~-~~~~v~V~~~~~~~~~a~~iiIATGS~p~ 148 (454)
T COG1249 103 LLKKNGVDVIRGEAR--FV-DPHTVEVTGEDKETITADNIIIATGSRPR 148 (454)
T ss_pred HHhhCCCEEEEEEEE--EC-CCCEEEEcCCCceEEEeCEEEEcCCCCCc
Confidence 356678888876522 21 24556665542348999999999998653
No 332
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=41.03 E-value=24 Score=35.54 Aligned_cols=42 Identities=21% Similarity=0.082 Sum_probs=28.9
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+..++.|++|++++.|- ..|+.++......|.||+|+|+|..
T Consensus 364 ~~l~~~Gv~f~~n~~vG--------~dit~~~l~~~~yDAV~LAtGA~~p 405 (944)
T PRK12779 364 EKIKLLGGRFVKNFVVG--------KTATLEDLKAAGFWKIFVGTGAGLP 405 (944)
T ss_pred HHHHhhcCeEEEeEEec--------cEEeHHHhccccCCEEEEeCCCCCC
Confidence 45677899998887552 1244444423568999999999853
No 333
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=40.47 E-value=61 Score=32.90 Aligned_cols=47 Identities=6% Similarity=0.201 Sum_probs=29.8
Q ss_pred HHHhC-CcEEEeCceeEEEEEcCCeE-EEE-------------eCCC-cEEEcCEEEEcCCCCh
Q psy3952 4 EFCEL-GGEIRLNQQVESFKENPESV-TIS-------------TKQG-DHLESSYALVCAGLQA 51 (252)
Q Consensus 4 ~a~~~-G~~i~~~~~V~~i~~~~~~~-~V~-------------t~~g-~~i~A~~VV~AaG~ws 51 (252)
++++. +++++.++.|.++... +.+ .+. +.++ ..+.+++||+|+|..-
T Consensus 224 ~l~~~~~v~v~~~t~V~~i~~~-~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~ 286 (985)
T TIGR01372 224 ELTAMPEVTLLPRTTAFGYYDH-NTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHE 286 (985)
T ss_pred HHhcCCCcEEEcCCEEEEEecC-CeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCC
Confidence 34444 5999999999887532 211 111 1111 1589999999999864
No 334
>KOG3851|consensus
Probab=40.39 E-value=13 Score=32.40 Aligned_cols=34 Identities=26% Similarity=0.619 Sum_probs=25.8
Q ss_pred eeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 17 QVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 17 ~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+|+++..+.+ +|.|..|++|.-|++|+|+|...+
T Consensus 113 kv~~f~P~~N--~v~t~gg~eIsYdylviA~Giql~ 146 (446)
T KOG3851|consen 113 KVKEFNPDKN--TVVTRGGEEISYDYLVIAMGIQLD 146 (446)
T ss_pred HHHhcCCCcC--eEEccCCcEEeeeeEeeeeeceec
Confidence 4555554444 467888889999999999999874
No 335
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=40.26 E-value=15 Score=33.46 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=27.8
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
+.+++.|++++.++.|.. .+...+. .+.+|+||+|+|.+.
T Consensus 198 ~~l~~~gv~~~~~~~v~~--------~v~~~~~-~~~~d~vvlAtGa~~ 237 (457)
T PRK11749 198 ERLLKLGVEIRTNTEVGR--------DITLDEL-RAGYDAVFIGTGAGL 237 (457)
T ss_pred HHHHHcCCEEEeCCEECC--------ccCHHHH-HhhCCEEEEccCCCC
Confidence 346678999988887621 1233334 478999999999974
No 336
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=40.07 E-value=13 Score=33.92 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=27.8
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|++++.++.|. ..|.+.+. ...+|+||+|+|++..
T Consensus 191 ~~l~~~gv~~~~~~~v~--------~~v~~~~~-~~~yd~viiAtGa~~p 231 (449)
T TIGR01316 191 KTLKKLGVTFRMNFLVG--------KTATLEEL-FSQYDAVFIGTGAGLP 231 (449)
T ss_pred HHHHhCCcEEEeCCccC--------CcCCHHHH-HhhCCEEEEeCCCCCC
Confidence 34667899998887541 12444444 4568999999998643
No 337
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=39.32 E-value=62 Score=29.90 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=27.0
Q ss_pred CCcEEEeCceeEEEEEcCCeEEEEeC---C---CcEEEcCEEEEcCCCCh
Q psy3952 8 LGGEIRLNQQVESFKENPESVTISTK---Q---GDHLESSYALVCAGLQA 51 (252)
Q Consensus 8 ~G~~i~~~~~V~~i~~~~~~~~V~t~---~---g~~i~A~~VV~AaG~ws 51 (252)
.|++++.+.. .+ .+...+.|... + ..++.+|+||+|+|...
T Consensus 117 ~gv~~i~G~a--~f-~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs~p 163 (486)
T TIGR01423 117 EGLTFFLGWG--AL-EDKNVVLVRESADPKSAVKERLQAEHILLATGSWP 163 (486)
T ss_pred CCeEEEEEEE--EE-ccCCEEEEeeccCCCCCcceEEECCEEEEecCCCC
Confidence 4888887752 12 23445666531 1 23699999999999864
No 338
>PRK12831 putative oxidoreductase; Provisional
Probab=38.74 E-value=16 Score=33.41 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=26.9
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC-cEEEcCEEEEcCCCCh
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQA 51 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g-~~i~A~~VV~AaG~ws 51 (252)
+.++++|++++.++.|.. .|...+. ..+.+|.||+|+|.|.
T Consensus 199 ~~~~~~gv~i~~~~~v~~--------~v~~~~~~~~~~~d~viiAtGa~~ 240 (464)
T PRK12831 199 ENIKKLGVKIETNVVVGK--------TVTIDELLEEEGFDAVFIGSGAGL 240 (464)
T ss_pred HHHHHcCCEEEcCCEECC--------cCCHHHHHhccCCCEEEEeCCCCC
Confidence 346778999999886621 1222221 1456899999999963
No 339
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=38.52 E-value=53 Score=29.94 Aligned_cols=28 Identities=11% Similarity=0.386 Sum_probs=20.5
Q ss_pred cCCeEEEEeCCC--cEEEcCEEEEcCCCCh
Q psy3952 24 NPESVTISTKQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 24 ~~~~~~V~t~~g--~~i~A~~VV~AaG~ws 51 (252)
+...+.|.+.+| .++.+|+||+|+|...
T Consensus 118 ~~~~v~v~~~~g~~~~~~~d~lViATGs~p 147 (466)
T PRK07818 118 DANTLEVDLNDGGTETVTFDNAIIATGSST 147 (466)
T ss_pred CCCEEEEEecCCCeeEEEcCEEEEeCCCCC
Confidence 344566766554 3699999999999864
No 340
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=37.52 E-value=33 Score=31.81 Aligned_cols=54 Identities=22% Similarity=0.398 Sum_probs=37.7
Q ss_pred hCCcEEEeCceeEEEEEcCC-eEEEE---eCCC--cEEEcCEEEEcCCCC----hHHHHHHcCCC
Q psy3952 7 ELGGEIRLNQQVESFKENPE-SVTIS---TKQG--DHLESSYALVCAGLQ----ADEMALKSGCS 61 (252)
Q Consensus 7 ~~G~~i~~~~~V~~i~~~~~-~~~V~---t~~g--~~i~A~~VV~AaG~w----s~~l~~~~g~~ 61 (252)
+.|+++..+ ++-.|...++ +..|. |-.| .++.+|-||+++|.- +..+++.+|+.
T Consensus 427 ~~gV~fIRG-rvaei~e~p~~~l~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~ 490 (622)
T COG1148 427 DYGVRFIRG-RVAEIAEFPKKKLIVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLS 490 (622)
T ss_pred hhchhhhcC-ChHHheeCCCCeeEEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcc
Confidence 678888765 6777766544 43443 3334 468999999999975 46888888863
No 341
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=37.39 E-value=27 Score=32.94 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=34.3
Q ss_pred hHHHh-CCcEEEeCceeEEEEEcCCe-E-E---EEeCCC--cEEEcCEEEEcCCCCh
Q psy3952 3 EEFCE-LGGEIRLNQQVESFKENPES-V-T---ISTKQG--DHLESSYALVCAGLQA 51 (252)
Q Consensus 3 ~~a~~-~G~~i~~~~~V~~i~~~~~~-~-~---V~t~~g--~~i~A~~VV~AaG~ws 51 (252)
+++.+ .+.+++.+..|+++..++++ + . +...+| ..+.|+.||+|+|+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 146 EQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred HHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 44555 56788999999999866443 2 1 233334 4588999999999887
No 342
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=35.81 E-value=98 Score=31.57 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=35.9
Q ss_pred hHHHhCCcEEEeCceeEEEEEc-CCeEE-EEe---------C--------CC--cEEEcCEEEEcCCCChHH
Q psy3952 3 EEFCELGGEIRLNQQVESFKEN-PESVT-IST---------K--------QG--DHLESSYALVCAGLQADE 53 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~-~~~~~-V~t---------~--------~g--~~i~A~~VV~AaG~ws~~ 53 (252)
+.+++.|+++++++.+++|..+ +++++ |+. . .| .++.||.||.|.|.-.+.
T Consensus 617 ~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~ 688 (1006)
T PRK12775 617 RHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANP 688 (1006)
T ss_pred HHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCCh
Confidence 4577889999999999998754 34432 211 0 12 259999999999987553
No 343
>PTZ00052 thioredoxin reductase; Provisional
Probab=34.52 E-value=86 Score=29.02 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=17.4
Q ss_pred eEEEEeC-CCcEEEcCEEEEcCCCCh
Q psy3952 27 SVTISTK-QGDHLESSYALVCAGLQA 51 (252)
Q Consensus 27 ~~~V~t~-~g~~i~A~~VV~AaG~ws 51 (252)
.+.|... ++..+++|+||+|+|...
T Consensus 131 ~v~v~~~~~~~~i~~d~lIIATGs~p 156 (499)
T PTZ00052 131 TVSYGDNSQEETITAKYILIATGGRP 156 (499)
T ss_pred EEEEeeCCCceEEECCEEEEecCCCC
Confidence 3445432 234699999999999854
No 344
>KOG1335|consensus
Probab=34.50 E-value=88 Score=28.27 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=27.8
Q ss_pred HHHhCCcEEEeCceeEEEEEcCCeEEEEeCCC--cEEEcCEEEEcCCCC
Q psy3952 4 EFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQ 50 (252)
Q Consensus 4 ~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g--~~i~A~~VV~AaG~w 50 (252)
..+++++++..+.- .| .+...++|...+| +.++|+.+|+|+|--
T Consensus 139 lfkknkV~~~kG~g--sf-~~p~~V~v~k~dg~~~ii~aKnIiiATGSe 184 (506)
T KOG1335|consen 139 LFKKNKVTYVKGFG--SF-LDPNKVSVKKIDGEDQIIKAKNIIIATGSE 184 (506)
T ss_pred HhhhcCeEEEeeeE--ee-cCCceEEEeccCCCceEEeeeeEEEEeCCc
Confidence 35667777665541 11 2344566666655 468899999998874
No 345
>KOG2614|consensus
Probab=33.84 E-value=35 Score=30.70 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=32.6
Q ss_pred eeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChHHHHHHcCC
Q psy3952 17 QVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 60 (252)
Q Consensus 17 ~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g~ 60 (252)
.+..++..+....|++.+|+++++|.+|=|=|+||. +.+.++.
T Consensus 129 ~~~~~~~~~~~~~v~l~~g~~~~~dlligCDGa~S~-Vr~~l~~ 171 (420)
T KOG2614|consen 129 KDVEIETLGKKLVVHLSDGTTVKGDLLIGCDGAYSK-VRKWLGF 171 (420)
T ss_pred ccceeeecccccceecCCCcEEEeeEEEEcCchHHH-HHHHhcc
Confidence 444455555555689999989999999999999985 6666664
No 346
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=32.39 E-value=81 Score=27.97 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=33.2
Q ss_pred HHhCCcEEEeCceeEEEEEcCCeEE-EE-----e---CC---------C-cEEEcCEEEEcCCCC
Q psy3952 5 FCELGGEIRLNQQVESFKENPESVT-IS-----T---KQ---------G-DHLESSYALVCAGLQ 50 (252)
Q Consensus 5 a~~~G~~i~~~~~V~~i~~~~~~~~-V~-----t---~~---------g-~~i~A~~VV~AaG~w 50 (252)
.++.-+++.+.++|.++..+++.++ |. . .. | .++.|..||+++|.-
T Consensus 163 ~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGI 227 (552)
T COG3573 163 QRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGI 227 (552)
T ss_pred HhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCCc
Confidence 3445688999999999999888754 32 0 01 2 468899999998764
No 347
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=32.30 E-value=66 Score=32.73 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=27.2
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|++++.++.| ++.. .+......|+||+|+|++..
T Consensus 597 e~l~~~GVe~~~gt~V-di~l---------e~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 597 EFVKAHGVKFEFGCSP-DLTV---------EQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred HHHHHcCCEEEeCcee-EEEh---------hhheeccCCEEEECcCCCCC
Confidence 3466789999999877 2221 12213457999999999854
No 348
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=31.96 E-value=97 Score=28.76 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=20.7
Q ss_pred ChhHHHhCCcEEEeCceeEEEEEc
Q psy3952 1 MGEEFCELGGEIRLNQQVESFKEN 24 (252)
Q Consensus 1 l~~~a~~~G~~i~~~~~V~~i~~~ 24 (252)
|.+-++++||.++.+|+|++|+.+
T Consensus 213 l~~~L~~~GV~F~~~t~V~di~~~ 236 (500)
T PF06100_consen 213 LIRYLKSQGVDFRFNTKVTDIDFD 236 (500)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEE
Confidence 356688999999999999999874
No 349
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=30.58 E-value=1.2e+02 Score=30.99 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=34.3
Q ss_pred hHHHhCCcEEEeCceeEEEEEcC-CeEE-E--E--------------e-C-------------CCcEEEcCEEEEcCCCC
Q psy3952 3 EEFCELGGEIRLNQQVESFKENP-ESVT-I--S--------------T-K-------------QGDHLESSYALVCAGLQ 50 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~-~~~~-V--~--------------t-~-------------~g~~i~A~~VV~AaG~w 50 (252)
+.|.+.|+++.+++...+|..+. ++++ | . + + ...++.||.||+|+|--
T Consensus 648 ~~A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~ 727 (1028)
T PRK06567 648 IYALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIE 727 (1028)
T ss_pred HHHHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccC
Confidence 56889999999999888887643 3332 1 1 0 1 11469999999999965
Q ss_pred h
Q psy3952 51 A 51 (252)
Q Consensus 51 s 51 (252)
-
T Consensus 728 ~ 728 (1028)
T PRK06567 728 N 728 (1028)
T ss_pred C
Confidence 4
No 350
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=30.57 E-value=25 Score=34.35 Aligned_cols=41 Identities=17% Similarity=0.196 Sum_probs=27.4
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
+.+++.|++|+.++.|. . .|+..+.....+|.||+|+|+|.
T Consensus 489 ~~l~~~gv~~~~~~~v~------~--~v~~~~l~~~~ydavvlAtGa~~ 529 (752)
T PRK12778 489 ENLKKLGVKFETDVIVG------K--TITIEELEEEGFKGIFIASGAGL 529 (752)
T ss_pred HHHHHCCCEEECCCEEC------C--cCCHHHHhhcCCCEEEEeCCCCC
Confidence 45678899999887552 1 12222222456899999999974
No 351
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=27.16 E-value=1.3e+02 Score=27.20 Aligned_cols=39 Identities=10% Similarity=0.244 Sum_probs=23.4
Q ss_pred HhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952 6 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ 50 (252)
Q Consensus 6 ~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w 50 (252)
+..|+++..+. +..+ +... |.+ ++.++.+|+||+|+|..
T Consensus 103 ~~~~v~~~~g~-~~~~--~~~~--v~v-~~~~~~~d~lIiATGs~ 141 (460)
T PRK06292 103 KKPKIDKIKGT-ARFV--DPNT--VEV-NGERIEAKNIVIATGSR 141 (460)
T ss_pred hhCCCEEEEEE-EEEc--cCCE--EEE-CcEEEEeCEEEEeCCCC
Confidence 34566665432 2211 2223 334 34479999999999987
No 352
>KOG1238|consensus
Probab=27.06 E-value=1.7e+02 Score=28.05 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=31.6
Q ss_pred CcEEEeCceeEEEEEcC--CeE-EEE-eCC-CcEEEcCE---EEEcCCCC-hHHHHHHcCC
Q psy3952 9 GGEIRLNQQVESFKENP--ESV-TIS-TKQ-GDHLESSY---ALVCAGLQ-ADEMALKSGC 60 (252)
Q Consensus 9 G~~i~~~~~V~~i~~~~--~~~-~V~-t~~-g~~i~A~~---VV~AaG~w-s~~l~~~~g~ 60 (252)
...+..++.|+.|..+. ... .|+ +.+ |..++.+. ||++||+- |.+|+-+.|+
T Consensus 268 NL~~~~~~~vtrvl~D~~~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGI 328 (623)
T KOG1238|consen 268 NLHISRNAAVTRVLIDPAGKRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGI 328 (623)
T ss_pred cccccccceEEEEEEcCCCceEEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCC
Confidence 45566778888888763 222 232 334 43344444 99999987 5677655454
No 353
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=25.65 E-value=73 Score=29.22 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=23.3
Q ss_pred EeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 13 RLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 13 ~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
..+..|..+.. ++. |...+|..+.+|.||.|+|.-.
T Consensus 253 ~~~~~I~~~~~-~g~--V~f~DG~~~~~D~Ii~~TGy~~ 288 (461)
T PLN02172 253 WMHSEIDTAHE-DGS--IVFKNGKVVYADTIVHCTGYKY 288 (461)
T ss_pred EECCcccceec-CCe--EEECCCCCccCCEEEECCcCCc
Confidence 34445554432 232 5556676799999999999854
No 354
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=24.96 E-value=39 Score=34.40 Aligned_cols=43 Identities=14% Similarity=0.238 Sum_probs=27.2
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|+++++++.+. ..+++.+-.. ....|.||+|+|+|..
T Consensus 488 ~~l~~~Gv~~~~~~~vg------~~~~~~~l~~-~~~yDaViIATGa~~p 530 (1006)
T PRK12775 488 QRLVDIGVKIETNKVIG------KTFTVPQLMN-DKGFDAVFLGVGAGAP 530 (1006)
T ss_pred HHHHHCCCEEEeCCccC------CccCHHHHhh-ccCCCEEEEecCCCCC
Confidence 45778899999886541 1122222111 2357999999999853
No 355
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=23.38 E-value=40 Score=30.89 Aligned_cols=41 Identities=24% Similarity=0.199 Sum_probs=27.7
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCChH
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD 52 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws~ 52 (252)
+.+++.|++++.+++|..- +...+. ...+|.||+|+|.+..
T Consensus 199 ~~~~~~Gv~~~~~~~v~~~--------~~~~~~-~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 199 EIFTAMGIEFHLNCEVGRD--------ISLDDL-LEDYDAVFLGVGTYRS 239 (467)
T ss_pred HHHHHCCCEEECCCEeCCc--------cCHHHH-HhcCCEEEEEeCCCCC
Confidence 4567889999988877321 111111 3468999999999864
No 356
>KOG1439|consensus
Probab=22.43 E-value=1.9e+02 Score=26.19 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=39.4
Q ss_pred hhHHHhCCcEEEeCceeEEEEEc-CCe-EEEEeCCCcEEEcCEEEEcCCCChHHHHHHcC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKEN-PES-VTISTKQGDHLESSYALVCAGLQADEMALKSG 59 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~-~~~-~~V~t~~g~~i~A~~VV~AaG~ws~~l~~~~g 59 (252)
++.+.-.|+++..+.++..|... ++. +.|.++.+ ...++ -|+|-.-+...-.++.|
T Consensus 239 aRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~-v~~~k-~vi~dpSY~~~~~k~vg 296 (440)
T KOG1439|consen 239 ARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGE-VAKCK-KVICDPSYFPQKVKKVG 296 (440)
T ss_pred HHHhhccCceeecCCceeeeeccCCccEEEEecCCc-eeecc-eEEecCccchHHHHhhh
Confidence 45556679999999999999884 433 34666655 66666 55677777766666665
No 357
>PRK13984 putative oxidoreductase; Provisional
Probab=22.31 E-value=40 Score=32.01 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=27.3
Q ss_pred hHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCCh
Q psy3952 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA 51 (252)
Q Consensus 3 ~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~ws 51 (252)
+.+++.|++++.++.|.. . +..++. ...+|+||+|+|.+.
T Consensus 341 ~~~~~~gv~~~~~~~v~~-~-------~~~~~~-~~~yD~vilAtGa~~ 380 (604)
T PRK13984 341 AFIEALGVKIHLNTRVGK-D-------IPLEEL-REKHDAVFLSTGFTL 380 (604)
T ss_pred HHHHHCCcEEECCCEeCC-c-------CCHHHH-HhcCCEEEEEcCcCC
Confidence 456788999998887732 0 111222 357899999999874
No 358
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=22.12 E-value=1.3e+02 Score=25.41 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=20.2
Q ss_pred cCCeEEEeccCCccccchHHHHHHHHHHHHhhcc
Q psy3952 212 AGRTLHCRNAPSPAATSSLAIAKHILNELRREFK 245 (252)
Q Consensus 212 ~~~~~~~~G~~~~G~t~a~~~g~~va~~i~~~~~ 245 (252)
..|+++++||+++|+- .+++++.+.++
T Consensus 165 ~~GlvvItGCsH~GI~-------niv~~~~~~~g 191 (259)
T COG1237 165 EKGLVVITGCSHPGIV-------NIVEWAKERSG 191 (259)
T ss_pred CCceEEEEcCCcccHH-------HHHHHHHHhcc
Confidence 4799999999999986 45555555554
No 359
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=21.57 E-value=47 Score=30.67 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred hhHHHhCCcEEEeCceeEEEEEcCCeEEEEeCCCcEEEcCEEEEcCCCC
Q psy3952 2 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ 50 (252)
Q Consensus 2 ~~~a~~~G~~i~~~~~V~~i~~~~~~~~V~t~~g~~i~A~~VV~AaG~w 50 (252)
.+.+++.|++++.++.|. ..+....- ...+|.||+|+|.+
T Consensus 200 ~~~~~~~Gv~~~~~~~v~--------~~~~~~~~-~~~~d~VilAtGa~ 239 (485)
T TIGR01317 200 IDLLSAEGIDFVTNTEIG--------VDISADEL-KEQFDAVVLAGGAT 239 (485)
T ss_pred HHHHHhCCCEEECCCEeC--------CccCHHHH-HhhCCEEEEccCCC
No 360
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=20.62 E-value=2.9e+02 Score=25.98 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=30.5
Q ss_pred hCCcEEEeCceeEEEEEcCCeE--EE-EeCCCcE--E--EcCE----EEEcCCCChHH
Q psy3952 7 ELGGEIRLNQQVESFKENPESV--TI-STKQGDH--L--ESSY----ALVCAGLQADE 53 (252)
Q Consensus 7 ~~G~~i~~~~~V~~i~~~~~~~--~V-~t~~g~~--i--~A~~----VV~AaG~ws~~ 53 (252)
..|++++.++.|+++..++... .+ .+.+|.. + .+|. |++|+|.-.+.
T Consensus 191 ~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~ 248 (555)
T TIGR03143 191 HPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSS 248 (555)
T ss_pred CCCcEEEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCCh
Confidence 3599999999999997543321 12 2234522 2 3666 99999987543
Done!