RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3952
(252 letters)
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 350 bits (901), Expect = e-121
Identities = 122/240 (50%), Positives = 155/240 (64%), Gaps = 1/240 (0%)
Query: 1 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 60
M E GGEIRL +V + E+ V + T QG+ E+ + CAGL +D +A +G
Sbjct: 155 MAELIQARGGEIRLGAEVTALDEHANGVVVRTTQGE-YEARTLINCAGLMSDRLAKMAGL 213
Query: 61 SLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLA 120
+ IVPFRGEY L P K LV IYPVPDP FPFLGVH T +DGSV +GPNAVLA
Sbjct: 214 EPDFRIVPFRGEYYRLAPEKNQLVNHLIYPVPDPAFPFLGVHLTRMIDGSVTVGPNAVLA 273
Query: 121 FKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEI 180
FK+EGYR RDFS+R+L L YPGFW+L K+ R G EM S S + +++Y +
Sbjct: 274 FKREGYRKRDFSLRDLLEILTYPGFWKLAQKHWRSGLGEMKNSLSKSGYLRLVQKYCPSL 333
Query: 181 EAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHILNEL 240
D+Q P+GVRAQA+S G LVDDF+F R+LH NAPSPAATSSL I +HI++++
Sbjct: 334 TLSDLQPYPAGVRAQAVSRDGKLVDDFLFVETPRSLHVCNAPSPAATSSLPIGEHIVSKV 393
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 185 bits (473), Expect = 2e-56
Identities = 80/262 (30%), Positives = 125/262 (47%), Gaps = 10/262 (3%)
Query: 1 MGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGD-HLESSYALVCAGLQADEMALKS 58
+ EE G E+RLN +V ++ + V ++T G+ LE+ + + AGL AD +A +
Sbjct: 159 LAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMA 218
Query: 59 GCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAV 118
G + I P RGEYL+L+ + L+R IYPVP+P P LGVH TP +DGS+ GPNA+
Sbjct: 219 GIPEDFKIFPVRGEYLVLDNEVKALLRHKIYPVPNPGLPGLGVHHTPTIDGSLLFGPNAL 278
Query: 119 LA-FKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYI 177
+ +G R DF + + G LG+K + I R+ L I
Sbjct: 279 DSPKFLKGDRGVDFDLLDSVRKANSRGMPDLGIKNNVLANYAGIRPILKEPRLPALDFII 338
Query: 178 EEIEAGDIQRGPSGVRAQALSSSGDLVDDFVFHSAGRTLHCRNAPSPAATSSLAIAKHIL 237
E + D +G+R+Q L++ + + R++ PSP A+S++ I +L
Sbjct: 339 PEAKDEDWFINVAGIRSQGLTADPAIAGGVLELLTERSIAVLLGPSPGASSAVPIMLRLL 398
Query: 238 -------NELRREFKLDELSSR 252
E KL E+
Sbjct: 399 EKVFEERARSEWEPKLKEIVPS 420
>gnl|CDD|240393 PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional.
Length = 497
Score = 42.4 bits (100), Expect = 1e-04
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 11 EIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPF 69
I LN +V + + + +S+ I T +G+ + + + +V A + A K G LE + +P
Sbjct: 233 SINLNTEVLNIERSNDSLYKIHTNRGE-IRARFVVVSACGYSLLFAQKMGYGLEYSCLPV 291
Query: 70 RGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR--MDGSVWLGPNA 117
G + +++ G +Y V +P PF VH P G GP A
Sbjct: 292 AGSFYF----SGNILNGKVYTVQNPALPFAAVHGDPDIIAKGKTRFGPTA 337
>gnl|CDD|218866 pfam06039, Mqo, Malate:quinone oxidoreductase (Mqo). This family
consists of several bacterial Malate:quinone
oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes
part in the citric acid cycle. It oxidises L-malate to
oxaloacetate and donates electrons to ubiquinone-1 and
other artificial acceptors or, via the electron transfer
chain, to oxygen. NAD is not an acceptor and the natural
direct acceptor for the enzyme is most likely a quinone.
The enzyme is therefore called malate:quinone
oxidoreductase, abbreviated to Mqo. Mqo is a peripheral
membrane protein and can be released from the membrane
by addition of chelators.
Length = 489
Score = 36.1 bits (84), Expect = 0.015
Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 33/208 (15%)
Query: 11 EIRLNQQVESFKENPE---SVTIS---TKQGDHLESSYALVCAGLQADEMALKSGC--SL 62
E++ N +V K N + +VT+ T +++ + + AG A + KSG S
Sbjct: 199 ELQYNHEVRDIKRNSDGTWTVTVKDLNTGDKRTIKAKFVFIGAGGGALPLLQKSGIPESK 258
Query: 63 EPAIVPFRGEYLLL-NPA--KQHLVRGNIYPVPDPNFPFLGV-HFTPRM-DGSVWL--GP 115
P G++L NP KQH + +Y P + V H R+ DG L GP
Sbjct: 259 GYGGFPVSGQFLRCTNPEVIKQHHAK--VYGKASVGAPPMSVPHLDTRVIDGKKSLLFGP 316
Query: 116 NAVLA--FKKEGYRWRDFSVRELFSTLR---YPGFWRLGLK---YTRYGSKEMIMSWFPS 167
A + F K G S +LFS+++ +G+K T+Y ++++S
Sbjct: 317 FAGFSPKFLKNG------SYLDLFSSVKPDNITPMLSVGVKNFPLTKYLISQLMLS--KE 368
Query: 168 MRVNELKQYIEEIEAGDIQRGPSGVRAQ 195
R+N L+++ E + D + +G R Q
Sbjct: 369 DRMNALREFYPEAKDEDWELITAGQRVQ 396
>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 34.0 bits (79), Expect = 0.073
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 5 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA--DEMAL 56
+ G IR N++VE + + V + K G +++ L G D + L
Sbjct: 226 LRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNL 279
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 33.0 bits (76), Expect = 0.083
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 3 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD------EMAL 56
LG EI +V + VT+ T+ G + + + D E L
Sbjct: 155 RAAEALGVEILEGTEVTGLEREGGGVTVETEDG-EIRADKVVNADSSGEDIDYLLLEELL 213
Query: 57 KSGCSLEPAIVPFRGEYL 74
++ L PA+ L
Sbjct: 214 EAARRLFPALADADILLL 231
>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional.
Length = 396
Score = 32.3 bits (74), Expect = 0.20
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 11 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL 49
E R + V +++ + VT+ +QG+ + C G+
Sbjct: 126 EFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGV 164
>gnl|CDD|225307 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
[General function prediction only].
Length = 486
Score = 31.5 bits (72), Expect = 0.39
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 1 MGEEFCELGGEIRLNQQVESF-KENPESVTISTKQGDHLESSYALVCAGLQA----DEMA 55
+ E LGGEIR N +VE E+ E + + +G+ +E+ Y ++ G + +
Sbjct: 179 IREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLH 238
Query: 56 LKSGCSLEP 64
K G +
Sbjct: 239 KKLGVKMRA 247
>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 403
Score = 31.1 bits (71), Expect = 0.47
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAG 48
LG ++R V F+ E VT++ G LE+ + G
Sbjct: 123 ALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADG 164
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 30.6 bits (70), Expect = 0.70
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAG 48
LG IR +V S +++ + T G+ ++ ++ G
Sbjct: 123 ALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164
>gnl|CDD|220868 pfam10748, DUF2531, Protein of unknown function (DUF2531). This
family of proteins with unknown function appears to be
restricted to Enterobacteriaceae.
Length = 133
Score = 28.6 bits (64), Expect = 1.4
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 9 GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEP 64
G + ++V ++ + +Q D L + + ++ L ADE+ L++G EP
Sbjct: 40 QGMVSKGERVTGILKDGQKKWRRVEQDDVLPNGWTIL--RLTADELTLETGDGCEP 93
>gnl|CDD|233831 TIGR02352, thiamin_ThiO, glycine oxidase ThiO. This family
consists of the homotetrameric, FAD-dependent glycine
oxidase ThiO, from species such as Bacillus subtilis
that use glycine in thiamine biosynthesis. In general,
members of this family will not be found in species such
as E. coli that instead use tyrosine and the ThiH
protein [Biosynthesis of cofactors, prosthetic groups,
and carriers, Thiamine].
Length = 337
Score = 29.6 bits (67), Expect = 1.4
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 25/114 (21%)
Query: 8 LGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAI 66
LG EI + +V+ + E VT I T GD ++ ++ AG A E+ L +
Sbjct: 150 LGVEIIEHTEVQHIEIRGEKVTAIVTPSGDV-QADQVVLAAGAWAGEL-------LPLPL 201
Query: 67 VPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFT------PRMDGSVWLG 114
P RG+ +R VP N P V + PR DG + +G
Sbjct: 202 RPVRGQ----------PLRLEAPAVPLLNRPLRAVVYGRRVYIVPRRDGRLVVG 245
>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and
metabolism].
Length = 450
Score = 29.7 bits (67), Expect = 1.6
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALV 45
+LG I LN+ V ++ + VT++ + Y LV
Sbjct: 218 QLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLV 256
>gnl|CDD|140294 PTZ00268, PTZ00268, glycosylphosphatidylinositol-specific
phospholipase C; Provisional.
Length = 380
Score = 29.5 bits (66), Expect = 1.7
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 15/72 (20%)
Query: 128 WRDFSVRELF-------STLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEI 180
WR R +F + + YP R SK M+ W M + +L Q +E +
Sbjct: 192 WRVSRRRRIFLVVASGRNYVPYP--------AARIRSKCMVSRWVNQMSLRKLLQALENL 243
Query: 181 EAGDIQRGPSGV 192
D++ +GV
Sbjct: 244 LLDDLKYPQTGV 255
>gnl|CDD|216700 pfam01787, Ilar_coat, Ilarvirus coat protein. This family consists
of various coat proteins from the ilarviruses part of
the Bromoviridae, members include apple mosaic virus and
prune dwarf virus. The ilarvirus coat protein is
required to initiate replication of the viral genome in
host plants. Members of the Bromoviridae have a positive
stand ssRNA genome with no DNA stage in there
replication.
Length = 204
Score = 28.9 bits (65), Expect = 2.3
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 108 DGSVWLGPNAV--LAFKKEGYRWRDF 131
DG GPNA+ L FKK YR R F
Sbjct: 122 DGDNPPGPNALGRLRFKKGTYRGRQF 147
>gnl|CDD|145800 pfam02831, gpW, gpW. gpW is a 68 residue protein known to be
present in phage particles. Extracts of phage-infected
cells lacking gpW contain DNA-filled heads, and active
tails, but no infectious virions. gpW is required for
the addition of gpFII to the head, which is, in turn,
required for the attachment of tails. Since gpFII and
tails are known to be attached at the connector, gpW is
also likely to assemble at this site. The addition of
gpW to filled heads increases the DNase resistance of
the packaged DNA, suggesting that gpW either forms a
plug at the connector to prevent ejection of the DNA, or
binds directly to the DNA. The large number of
positively charged residues in gpW (its calculated pI is
10.8) is consistent with a role in DNA interaction.
Length = 68
Score = 26.8 bits (59), Expect = 2.5
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 165 FPSMRVNELKQYIEEIEA----GDIQRGPSGVR 193
+ + +++LK YI E+EA +RGP+GVR
Sbjct: 35 YTATSLSDLKAYIAELEAQLGMTQRRRGPAGVR 67
>gnl|CDD|119396 cd06462, Peptidase_S24_S26, The S24, S26 LexA/signal peptidase
superfamily contains LexA-related and type I signal
peptidase families. The S24 LexA protein domains
include: the lambda repressor CI/C2 family and related
bacterial prophage repressor proteins; LexA (EC
3.4.21.88), the repressor of genes in the cellular SOS
response to DNA damage; MucA and the related UmuD
proteins, which are lesion-bypass DNA polymerases,
induced in response to mitogenic DNA damage; RulA, a
component of the rulAB locus that confers resistance to
UV, and RuvA, which is a component of the RuvABC
resolvasome that catalyzes the resolution of Holliday
junctions that arise during genetic recombination and
DNA repair. The S26 type I signal peptidase (SPase)
family also includes mitochondrial inner membrane
protease (IMP)-like members. SPases are essential
membrane-bound proteases which function to cleave away
the amino-terminal signal peptide from the translocated
pre-protein, thus playing a crucial role in the
transport of proteins across membranes in all living
organisms. All members in this superfamily are unique
serine proteases that carry out catalysis using a
serine/lysine dyad instead of the prototypical
serine/histidine/aspartic acid triad found in most
serine proteases.
Length = 84
Score = 27.2 bits (61), Expect = 2.6
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 58 SGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIY 89
G S+EP I G+ +L++ + RG+I
Sbjct: 6 EGDSMEPTI--PDGDLVLVDKSSYEPKRGDIV 35
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace amines.
In lower eukaryotes such as aspergillus and in bacteria
the main role of amine oxidases is to provide a source
of ammonium. PAOs in plants, bacteria and protozoa
oxidase spermidine and spermine to an aminobutyral,
diaminopropane and hydrogen peroxide and are involved in
the catabolism of polyamines. Other members of this
family include tryptophan 2-monooxygenase, putrescine
oxidase, corticosteroid binding proteins and
antibacterial glycoproteins.
Length = 444
Score = 29.1 bits (65), Expect = 2.8
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL 49
LGG +RLN +V S ++ + VT++T G +E+ +V L
Sbjct: 216 LLGGRVRLNTRVRSITKSGDGVTVTTVDGRTIEADAVIVTVPL 258
>gnl|CDD|184994 PRK15034, PRK15034, nitrate/nitrite transport protein NarU;
Provisional.
Length = 462
Score = 28.7 bits (64), Expect = 3.0
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 30/86 (34%)
Query: 94 PNFPFLGVHFTPRMDGSV---------------------WLGPNAVLAFKKEGYRWRDFS 132
P F FLGV+ P+ DGSV W G N + + + S
Sbjct: 190 PVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA--------S 241
Query: 133 VRELFSTLRYPGFWRLGLKY-TRYGS 157
+ + L+ W L L Y +GS
Sbjct: 242 IADQLPVLQRLHLWLLSLLYLATFGS 267
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when
searched with a partial length search brings in proteins
with a dinucleotide-binding motif (Rossman fold) over
the initial 40 residues of the model, including
oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 28.3 bits (64), Expect = 3.8
Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 49/192 (25%)
Query: 7 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAG------LQAD----EMAL 56
ELG EI N +V+S K++ + T G+ E+ ++ G L + E+A
Sbjct: 117 ELGVEILTNSKVKSIKKDDGGFGVETSGGE-YEADKVIIATGGLSYPQLGSTGDGYEIAE 175
Query: 57 KSG---CSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFL-GVHFTPRMDGSVW 112
G PA+VP + + L G+ +DG V
Sbjct: 176 SLGHTIVPPVPALVPLT--------------------LDESFLKELSGI----SLDGVVL 211
Query: 113 LGPNAVLAFKKEGYRWRD--FSVREL--FSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSM 168
N ++ G D F+ L + L F L G + I P +
Sbjct: 212 SLVNGKKVLEEFG----DLLFTHFGLSGPAILDLSAFAARALL-KHKGVELEI-DLLPDL 265
Query: 169 RVNELKQYIEEI 180
EL+Q ++ +
Sbjct: 266 SEEELEQRLKRL 277
>gnl|CDD|233798 TIGR02244, HAD-IG-Ncltidse, HAD superfamily (subfamily IG)
hydrolase, 5'-nucleotidase. This model includes a
5'-nucleotidase specific for purines (IMP and GMP).
These enzymes are members of the Haloacid Dehalogenase
(HAD) superfamily. HAD members are recognized by three
short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either
{hhhh(D/E)(D/E)x(3-4)(G/N)} or
{hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a
hydrophobic residue). Crystal structures of many HAD
enzymes has verified PSI-PRED predictions of secondary
structural elements which show each of the "hhhh"
sequences of the motifs as part of beta sheets. This
subfamily of enzymes is part of "Subfamily I" of the HAD
superfamily by virtue of a "cap" domain in between
motifs 1 and 2. This subfamily's cap domain has a
different predicted secondary structure than all other
known HAD enzymes and thus has been designated
"subfamily IG". This domain appears to consist of a
mixed alpha/beta fold. A Pfam model (pfam05761) detects
an identical range of sequences above the trusted
cutoff, but does not model the N-terminal motif 1
region. A TIGRFAMs model (TIGR01993) represents a
(putative) family of _pyrimidine_ 5'-nucleotidases which
are also subfamily I HAD's, which should not be confused
with the current model.
Length = 343
Score = 28.1 bits (63), Expect = 4.9
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 72 EYLLLNPAKQHLVRGNIYP------VPDPNFPFLGVHF 103
E L+ + AK+ LV+ YP DP F G+ F
Sbjct: 32 EALIYDLAKERLVKRFGYPEELLSFAYDPTFAIRGLVF 69
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 27.9 bits (63), Expect = 5.4
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 7 ELGGEIRLNQQVESF-KENPESVTISTKQGDHLESSYALVCAG 48
ELG +IR +V S K++ + T G+ LE+ ++ G
Sbjct: 120 ELGVKIRTRTRVLSVEKDDDGRFRVDTDGGEELEADSLVLATG 162
>gnl|CDD|217144 pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family
consists of bacterial and archaeal Malate/L-lactate
dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27,
catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate
+ NADH. Malate dehydrogenase, EC:1.1.1.37 and
EC:1.1.1.82, catalyzes the reactions: (S)-malate +
NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+)
<=> oxaloacetate + NADPH respectively.
Length = 334
Score = 27.7 bits (62), Expect = 5.5
Identities = 5/39 (12%), Positives = 13/39 (33%)
Query: 165 FPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDL 203
S + +Y++ + G I + ++ L
Sbjct: 40 VHSHGIGRFPRYVQRLSQGGINPNAQPKIVEEGPATAQL 78
>gnl|CDD|234144 TIGR03197, MnmC_Cterm, tRNA U-34 5-methylaminomethyl-2-thiouridine
biosynthesis protein MnmC, C-terminal domain. In
Escherichia coli, the protein previously designated YfcK
is now identified as the bifunctional enzyme MnmC. It
acts, following the action of the heterotetramer of GidA
and MnmE, in the modification of U-34 of certain tRNA to
5-methylaminomethyl-2-thiouridine (mnm5s2U). In other
bacterial, the corresponding proteins are usually but
always found as a single polypeptide chain, but
occasionally as the product of tandem genes. This model
represents the C-terminal region of the multifunctional
protein [Protein synthesis, tRNA and rRNA base
modification].
Length = 381
Score = 27.6 bits (62), Expect = 7.1
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 11 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 70
+ N ++ S + + E + G+ + +S ++ G QA ++A + + P R
Sbjct: 150 TLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQLAQ----TAHLPLRPVR 205
Query: 71 G 71
G
Sbjct: 206 G 206
>gnl|CDD|234555 TIGR04344, ovoA_Nterm, 5-histidylcysteine sulfoxide synthase.
Ovothiol A is N1-methyl-4-mercaptohistidine. In the
absence of S-adenosylmethione, a methyl donor, the
intermediate produced is 4-mercaptohistidine. In both
Erwinia tasmaniensis and Trypanosoma cruzi, a protein
occurs with 5-histidylcysteine sulfoxide synthase
activity, but these two enzymes and most homologs share
an additional C-terminal methyltransferase domain. Thus
OvoA may be a bifunctional enzyme with
5-histidylcysteine sulfoxide synthase and
4-mercaptohistidine N1-methyltranferase activity. This
model describes the 5-histidylcysteine sulfoxide
synthase domain, a homolog of the ergothioneine
biosynthesis protein EgtB [Biosynthesis of cofactors,
prosthetic groups, and carriers, Glutathione and
analogs].
Length = 442
Score = 27.2 bits (61), Expect = 8.1
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 10/45 (22%)
Query: 123 KEGYRWRDFSVRELFSTLRYPGFWRL---GLKYTRYGSKEMIMSW 164
+EG+ W+ F ++P FW G + R +E+ M W
Sbjct: 254 EEGWEWKQ------FRNAKHPTFWVPDSHGYRL-RTMFEEIPMPW 291
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.415
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,251,096
Number of extensions: 1268751
Number of successful extensions: 1158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1151
Number of HSP's successfully gapped: 34
Length of query: 252
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 157
Effective length of database: 6,723,972
Effective search space: 1055663604
Effective search space used: 1055663604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)